####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 33 ( 275), selected 33 , name T0548TS476_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 33 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS476_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 14 - 46 4.92 4.92 LCS_AVERAGE: 94.29 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 33 - 46 1.96 7.56 LCS_AVERAGE: 28.83 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 27 - 33 0.93 7.95 LONGEST_CONTINUOUS_SEGMENT: 7 34 - 40 0.59 8.26 LCS_AVERAGE: 15.41 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 33 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 14 H 14 3 3 33 0 3 3 3 3 4 6 7 10 19 22 26 28 30 31 33 33 33 33 33 LCS_GDT Y 15 Y 15 3 5 33 0 3 3 3 5 5 8 15 19 23 24 26 28 30 31 33 33 33 33 33 LCS_GDT T 16 T 16 3 5 33 3 3 3 3 5 5 6 10 12 20 21 23 26 30 31 33 33 33 33 33 LCS_GDT V 17 V 17 3 5 33 3 3 3 3 5 7 9 11 12 20 22 26 28 30 31 33 33 33 33 33 LCS_GDT T 18 T 18 3 5 33 3 3 3 3 5 5 6 8 10 12 15 19 21 29 31 33 33 33 33 33 LCS_GDT D 19 D 19 3 5 33 3 4 4 5 5 6 6 9 15 22 24 26 28 30 31 33 33 33 33 33 LCS_GDT I 20 I 20 3 4 33 3 4 4 5 6 6 15 17 22 23 26 27 28 30 31 33 33 33 33 33 LCS_GDT K 21 K 21 4 5 33 3 5 7 9 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT D 22 D 22 4 5 33 3 4 4 5 10 13 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT L 23 L 23 4 5 33 3 4 4 5 5 5 6 8 10 20 26 27 28 30 31 33 33 33 33 33 LCS_GDT T 24 T 24 4 10 33 3 4 4 5 5 9 17 21 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT K 25 K 25 3 10 33 3 3 6 8 8 14 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT L 26 L 26 4 10 33 3 4 6 10 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT G 27 G 27 7 10 33 5 5 6 10 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT A 28 A 28 7 10 33 5 5 6 10 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT I 29 I 29 7 10 33 5 5 6 10 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT Y 30 Y 30 7 10 33 5 5 7 10 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT D 31 D 31 7 10 33 5 5 7 10 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT K 32 K 32 7 10 33 3 5 6 10 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT T 33 T 33 7 14 33 3 5 6 10 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT K 34 K 34 7 14 33 5 7 9 11 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT K 35 K 35 7 14 33 5 7 9 11 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT Y 36 Y 36 7 14 33 5 7 9 11 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT W 37 W 37 7 14 33 5 7 9 11 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT V 38 V 38 7 14 33 5 7 9 11 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT Y 39 Y 39 7 14 33 4 7 9 11 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT Q 40 Q 40 7 14 33 3 7 7 10 11 13 14 22 24 25 26 27 28 29 31 33 33 33 33 33 LCS_GDT G 41 G 41 6 14 33 4 6 7 11 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT K 42 K 42 6 14 33 4 7 9 11 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT P 43 P 43 6 14 33 4 7 9 11 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT V 44 V 44 6 14 33 4 7 9 11 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT M 45 M 45 6 14 33 3 6 9 11 12 16 21 22 24 25 26 27 28 30 31 33 33 33 33 33 LCS_GDT P 46 P 46 6 14 33 3 6 9 11 12 13 17 22 23 25 26 27 28 30 31 33 33 33 33 33 LCS_AVERAGE LCS_A: 46.18 ( 15.41 28.83 94.29 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 7 9 11 12 17 21 22 24 25 26 27 28 30 31 33 33 33 33 33 GDT PERCENT_AT 14.29 20.00 25.71 31.43 34.29 48.57 60.00 62.86 68.57 71.43 74.29 77.14 80.00 85.71 88.57 94.29 94.29 94.29 94.29 94.29 GDT RMS_LOCAL 0.31 0.59 0.91 1.26 1.40 2.44 2.67 2.75 3.02 3.10 3.36 3.45 3.74 4.54 4.62 4.92 4.92 4.92 4.92 4.92 GDT RMS_ALL_AT 7.98 8.26 7.23 7.62 7.66 5.59 5.68 5.70 5.94 5.93 5.74 5.81 5.55 4.93 4.93 4.92 4.92 4.92 4.92 4.92 # Checking swapping # possible swapping detected: D 31 D 31 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 14 H 14 11.703 0 0.325 1.118 13.726 0.000 2.714 LGA Y 15 Y 15 8.594 0 0.592 0.725 10.940 1.548 10.278 LGA T 16 T 16 11.505 0 0.538 1.415 15.501 0.119 0.068 LGA V 17 V 17 11.557 0 0.642 1.515 12.569 0.714 0.408 LGA T 18 T 18 12.777 0 0.556 1.112 16.649 0.000 0.000 LGA D 19 D 19 10.071 0 0.614 0.646 14.937 6.071 3.036 LGA I 20 I 20 6.291 0 0.614 0.894 12.511 23.214 12.857 LGA K 21 K 21 1.171 0 0.603 0.932 9.477 69.048 47.778 LGA D 22 D 22 3.574 0 0.634 0.911 4.979 42.262 42.143 LGA L 23 L 23 6.512 0 0.331 0.511 10.835 17.500 9.524 LGA T 24 T 24 5.617 0 0.603 0.561 6.851 29.286 27.007 LGA K 25 K 25 3.796 0 0.642 1.112 11.253 47.143 24.074 LGA L 26 L 26 3.026 0 0.684 0.656 10.668 63.095 35.476 LGA G 27 G 27 2.874 0 0.189 0.189 3.175 53.571 53.571 LGA A 28 A 28 3.252 0 0.072 0.115 3.607 55.476 53.048 LGA I 29 I 29 2.726 0 0.061 1.141 5.807 53.571 47.976 LGA Y 30 Y 30 2.741 0 0.057 1.260 13.420 60.952 28.095 LGA D 31 D 31 2.438 0 0.315 1.090 3.957 59.167 52.917 LGA K 32 K 32 2.961 0 0.582 1.166 6.495 59.286 48.360 LGA T 33 T 33 3.220 0 0.683 0.983 5.920 52.024 41.156 LGA K 34 K 34 2.823 0 0.683 0.950 8.903 60.952 40.212 LGA K 35 K 35 2.692 0 0.340 0.657 4.368 53.571 52.646 LGA Y 36 Y 36 2.841 0 0.094 1.358 8.500 57.143 38.849 LGA W 37 W 37 2.975 0 0.078 1.201 6.558 59.048 53.605 LGA V 38 V 38 2.695 0 0.080 0.216 3.369 55.357 56.122 LGA Y 39 Y 39 3.037 0 0.061 0.279 3.747 48.452 53.690 LGA Q 40 Q 40 5.124 0 0.390 0.561 11.986 33.214 16.667 LGA G 41 G 41 2.583 0 0.551 0.551 2.583 62.857 62.857 LGA K 42 K 42 1.162 0 0.079 1.101 6.170 83.810 69.101 LGA P 43 P 43 0.465 0 0.045 0.175 1.336 97.619 91.973 LGA V 44 V 44 1.438 0 0.080 0.995 3.748 75.357 65.850 LGA M 45 M 45 3.292 0 0.163 1.237 7.065 46.905 37.440 LGA P 46 P 46 4.864 0 0.058 0.068 5.355 30.238 30.816 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 33 132 132 100.00 275 275 100.00 35 SUMMARY(RMSD_GDC): 4.923 4.821 6.003 41.673 34.580 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 33 35 4.0 22 2.75 52.143 47.747 0.772 LGA_LOCAL RMSD: 2.750 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.698 Number of assigned atoms: 33 Std_ASGN_ATOMS RMSD: 4.923 Standard rmsd on all 33 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.075918 * X + -0.622334 * Y + 0.779061 * Z + 36.588348 Y_new = -0.894549 * X + 0.302637 * Y + 0.328926 * Z + -74.487930 Z_new = -0.440475 * X + -0.721880 * Y + -0.533733 * Z + -16.054642 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.486132 0.456127 -2.207457 [DEG: -85.1491 26.1342 -126.4779 ] ZXZ: 1.970300 2.133806 -2.593724 [DEG: 112.8899 122.2580 -148.6094 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS476_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS476_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 33 35 4.0 22 2.75 47.747 4.92 REMARK ---------------------------------------------------------- MOLECULE T0548TS476_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3l2q_A ATOM 1 N HIS 14 -45.758 -12.443 36.990 1.00 0.00 N ATOM 2 CA HIS 14 -44.701 -12.855 36.043 1.00 0.00 C ATOM 3 ND1 HIS 14 -42.246 -14.386 37.681 1.00 0.00 N ATOM 4 CG HIS 14 -43.607 -14.547 37.543 1.00 0.00 C ATOM 5 CB HIS 14 -44.346 -14.334 36.256 1.00 0.00 C ATOM 6 NE2 HIS 14 -43.024 -14.945 39.687 1.00 0.00 N ATOM 7 CD2 HIS 14 -44.067 -14.890 38.778 1.00 0.00 C ATOM 8 CE1 HIS 14 -41.951 -14.635 38.982 1.00 0.00 C ATOM 9 C HIS 14 -45.103 -12.646 34.622 1.00 0.00 C ATOM 10 O HIS 14 -45.736 -11.652 34.283 1.00 0.00 O ATOM 11 N TYR 15 -44.706 -13.594 33.753 1.00 0.00 N ATOM 12 CA TYR 15 -44.986 -13.519 32.349 1.00 0.00 C ATOM 13 CB TYR 15 -44.338 -14.651 31.534 1.00 0.00 C ATOM 14 CG TYR 15 -42.857 -14.611 31.676 1.00 0.00 C ATOM 15 CD1 TYR 15 -42.256 -15.071 32.825 1.00 0.00 C ATOM 16 CD2 TYR 15 -42.065 -14.147 30.651 1.00 0.00 C ATOM 17 CE1 TYR 15 -40.889 -15.048 32.962 1.00 0.00 C ATOM 18 CE2 TYR 15 -40.697 -14.123 30.783 1.00 0.00 C ATOM 19 CZ TYR 15 -40.106 -14.572 31.938 1.00 0.00 C ATOM 20 OH TYR 15 -38.700 -14.543 32.065 1.00 0.00 O ATOM 21 C TYR 15 -46.463 -13.648 32.135 1.00 0.00 C ATOM 22 O TYR 15 -47.031 -12.955 31.291 1.00 0.00 O ATOM 23 N THR 16 -47.126 -14.528 32.917 1.00 0.00 N ATOM 24 CA THR 16 -48.511 -14.848 32.687 1.00 0.00 C ATOM 25 CB THR 16 -49.099 -15.734 33.745 1.00 0.00 C ATOM 26 OG1 THR 16 -48.410 -16.974 33.789 1.00 0.00 O ATOM 27 CG2 THR 16 -50.586 -15.958 33.416 1.00 0.00 C ATOM 28 C THR 16 -49.319 -13.595 32.662 1.00 0.00 C ATOM 29 O THR 16 -50.062 -13.364 31.711 1.00 0.00 O ATOM 30 N VAL 17 -49.202 -12.734 33.687 1.00 0.00 N ATOM 31 CA VAL 17 -49.895 -11.489 33.547 1.00 0.00 C ATOM 32 CB VAL 17 -50.142 -10.766 34.836 1.00 0.00 C ATOM 33 CG1 VAL 17 -51.077 -11.633 35.696 1.00 0.00 C ATOM 34 CG2 VAL 17 -48.793 -10.444 35.500 1.00 0.00 C ATOM 35 C VAL 17 -48.933 -10.704 32.737 1.00 0.00 C ATOM 36 O VAL 17 -47.740 -10.794 32.989 1.00 0.00 O ATOM 37 N THR 18 -49.414 -9.952 31.728 1.00 0.00 N ATOM 38 CA THR 18 -48.512 -9.313 30.812 1.00 0.00 C ATOM 39 CB THR 18 -49.209 -8.587 29.693 1.00 0.00 C ATOM 40 OG1 THR 18 -48.248 -8.008 28.822 1.00 0.00 O ATOM 41 CG2 THR 18 -50.158 -7.512 30.254 1.00 0.00 C ATOM 42 C THR 18 -47.574 -8.368 31.499 1.00 0.00 C ATOM 43 O THR 18 -47.863 -7.191 31.697 1.00 0.00 O ATOM 44 N ASP 19 -46.385 -8.878 31.863 1.00 0.00 N ATOM 45 CA ASP 19 -45.347 -8.084 32.440 1.00 0.00 C ATOM 46 CB ASP 19 -45.021 -8.452 33.893 1.00 0.00 C ATOM 47 CG ASP 19 -46.166 -7.944 34.756 1.00 0.00 C ATOM 48 OD1 ASP 19 -47.026 -7.198 34.218 1.00 0.00 O ATOM 49 OD2 ASP 19 -46.195 -8.295 35.966 1.00 0.00 O ATOM 50 C ASP 19 -44.153 -8.405 31.614 1.00 0.00 C ATOM 51 O ASP 19 -43.799 -9.573 31.470 1.00 0.00 O ATOM 52 N ILE 20 -43.499 -7.377 31.045 1.00 0.00 N ATOM 53 CA ILE 20 -42.415 -7.654 30.150 1.00 0.00 C ATOM 54 CB ILE 20 -42.049 -6.506 29.253 1.00 0.00 C ATOM 55 CG2 ILE 20 -41.488 -5.369 30.123 1.00 0.00 C ATOM 56 CG1 ILE 20 -41.097 -6.982 28.144 1.00 0.00 C ATOM 57 CD1 ILE 20 -40.912 -5.971 27.013 1.00 0.00 C ATOM 58 C ILE 20 -41.196 -8.026 30.921 1.00 0.00 C ATOM 59 O ILE 20 -40.867 -7.409 31.933 1.00 0.00 O ATOM 60 N LYS 21 -40.515 -9.097 30.468 1.00 0.00 N ATOM 61 CA LYS 21 -39.285 -9.486 31.084 1.00 0.00 C ATOM 62 CB LYS 21 -39.312 -10.853 31.785 1.00 0.00 C ATOM 63 CG LYS 21 -38.044 -11.106 32.603 1.00 0.00 C ATOM 64 CD LYS 21 -38.176 -12.222 33.641 1.00 0.00 C ATOM 65 CE LYS 21 -36.895 -12.437 34.452 1.00 0.00 C ATOM 66 NZ LYS 21 -37.145 -13.403 35.544 1.00 0.00 N ATOM 67 C LYS 21 -38.253 -9.522 30.010 1.00 0.00 C ATOM 68 O LYS 21 -38.564 -9.641 28.824 1.00 0.00 O ATOM 69 N ASP 22 -36.978 -9.425 30.419 1.00 0.00 N ATOM 70 CA ASP 22 -35.901 -9.348 29.484 1.00 0.00 C ATOM 71 CB ASP 22 -34.526 -9.299 30.169 1.00 0.00 C ATOM 72 CG ASP 22 -33.461 -9.216 29.087 1.00 0.00 C ATOM 73 OD1 ASP 22 -33.727 -8.564 28.041 1.00 0.00 O ATOM 74 OD2 ASP 22 -32.370 -9.814 29.285 1.00 0.00 O ATOM 75 C ASP 22 -35.920 -10.546 28.589 1.00 0.00 C ATOM 76 O ASP 22 -36.048 -11.685 29.040 1.00 0.00 O ATOM 77 N LEU 23 -35.774 -10.278 27.276 1.00 0.00 N ATOM 78 CA LEU 23 -35.677 -11.242 26.217 1.00 0.00 C ATOM 79 CB LEU 23 -34.504 -12.221 26.390 1.00 0.00 C ATOM 80 CG LEU 23 -33.131 -11.523 26.332 1.00 0.00 C ATOM 81 CD1 LEU 23 -31.984 -12.545 26.296 1.00 0.00 C ATOM 82 CD2 LEU 23 -33.067 -10.505 25.181 1.00 0.00 C ATOM 83 C LEU 23 -36.943 -12.015 26.007 1.00 0.00 C ATOM 84 O LEU 23 -36.919 -13.069 25.374 1.00 0.00 O ATOM 85 N THR 24 -38.090 -11.520 26.506 1.00 0.00 N ATOM 86 CA THR 24 -39.319 -12.190 26.188 1.00 0.00 C ATOM 87 CB THR 24 -40.124 -12.570 27.396 1.00 0.00 C ATOM 88 OG1 THR 24 -40.418 -11.422 28.178 1.00 0.00 O ATOM 89 CG2 THR 24 -39.308 -13.580 28.220 1.00 0.00 C ATOM 90 C THR 24 -40.118 -11.221 25.370 1.00 0.00 C ATOM 91 O THR 24 -40.660 -10.250 25.893 1.00 0.00 O ATOM 92 N LYS 25 -40.226 -11.472 24.049 1.00 0.00 N ATOM 93 CA LYS 25 -40.894 -10.510 23.224 1.00 0.00 C ATOM 94 CB LYS 25 -40.701 -10.694 21.705 1.00 0.00 C ATOM 95 CG LYS 25 -41.421 -11.908 21.112 1.00 0.00 C ATOM 96 CD LYS 25 -41.535 -11.848 19.586 1.00 0.00 C ATOM 97 CE LYS 25 -40.203 -11.551 18.893 1.00 0.00 C ATOM 98 NZ LYS 25 -40.419 -11.301 17.451 1.00 0.00 N ATOM 99 C LYS 25 -42.357 -10.557 23.486 1.00 0.00 C ATOM 100 O LYS 25 -42.977 -11.620 23.514 1.00 0.00 O ATOM 101 N LEU 26 -42.946 -9.367 23.677 1.00 0.00 N ATOM 102 CA LEU 26 -44.353 -9.245 23.885 1.00 0.00 C ATOM 103 CB LEU 26 -44.755 -7.903 24.527 1.00 0.00 C ATOM 104 CG LEU 26 -46.270 -7.740 24.764 1.00 0.00 C ATOM 105 CD1 LEU 26 -46.802 -8.766 25.779 1.00 0.00 C ATOM 106 CD2 LEU 26 -46.638 -6.291 25.109 1.00 0.00 C ATOM 107 C LEU 26 -44.972 -9.343 22.530 1.00 0.00 C ATOM 108 O LEU 26 -44.272 -9.415 21.520 1.00 0.00 O ATOM 109 N GLY 27 -46.315 -9.383 22.482 1.00 0.00 N ATOM 110 CA GLY 27 -47.006 -9.494 21.236 1.00 0.00 C ATOM 111 C GLY 27 -47.519 -10.883 21.182 1.00 0.00 C ATOM 112 O GLY 27 -48.400 -11.207 20.386 1.00 0.00 O ATOM 113 N ALA 28 -46.968 -11.742 22.051 1.00 0.00 N ATOM 114 CA ALA 28 -47.451 -13.081 22.109 1.00 0.00 C ATOM 115 CB ALA 28 -46.348 -14.130 21.994 1.00 0.00 C ATOM 116 C ALA 28 -48.050 -13.244 23.464 1.00 0.00 C ATOM 117 O ALA 28 -47.526 -12.723 24.447 1.00 0.00 O ATOM 118 N ILE 29 -49.182 -13.963 23.546 1.00 0.00 N ATOM 119 CA ILE 29 -49.816 -14.163 24.815 1.00 0.00 C ATOM 120 CB ILE 29 -51.306 -14.337 24.730 1.00 0.00 C ATOM 121 CG2 ILE 29 -51.821 -14.778 26.111 1.00 0.00 C ATOM 122 CG1 ILE 29 -51.953 -13.040 24.219 1.00 0.00 C ATOM 123 CD1 ILE 29 -53.397 -13.219 23.756 1.00 0.00 C ATOM 124 C ILE 29 -49.232 -15.404 25.399 1.00 0.00 C ATOM 125 O ILE 29 -49.058 -16.404 24.703 1.00 0.00 O ATOM 126 N TYR 30 -48.892 -15.360 26.705 1.00 0.00 N ATOM 127 CA TYR 30 -48.272 -16.488 27.344 1.00 0.00 C ATOM 128 CB TYR 30 -47.190 -16.085 28.358 1.00 0.00 C ATOM 129 CG TYR 30 -46.198 -15.217 27.676 1.00 0.00 C ATOM 130 CD1 TYR 30 -45.092 -15.744 27.053 1.00 0.00 C ATOM 131 CD2 TYR 30 -46.388 -13.855 27.675 1.00 0.00 C ATOM 132 CE1 TYR 30 -44.189 -14.915 26.432 1.00 0.00 C ATOM 133 CE2 TYR 30 -45.490 -13.022 27.058 1.00 0.00 C ATOM 134 CZ TYR 30 -44.389 -13.555 26.434 1.00 0.00 C ATOM 135 OH TYR 30 -43.464 -12.704 25.798 1.00 0.00 O ATOM 136 C TYR 30 -49.323 -17.157 28.174 1.00 0.00 C ATOM 137 O TYR 30 -49.775 -16.603 29.175 1.00 0.00 O ATOM 138 N ASP 31 -49.750 -18.367 27.758 1.00 0.00 N ATOM 139 CA ASP 31 -50.733 -19.113 28.491 1.00 0.00 C ATOM 140 CB ASP 31 -51.783 -19.784 27.583 1.00 0.00 C ATOM 141 CG ASP 31 -51.075 -20.736 26.622 1.00 0.00 C ATOM 142 OD1 ASP 31 -49.816 -20.712 26.581 1.00 0.00 O ATOM 143 OD2 ASP 31 -51.790 -21.491 25.909 1.00 0.00 O ATOM 144 C ASP 31 -50.047 -20.178 29.289 1.00 0.00 C ATOM 145 O ASP 31 -48.826 -20.320 29.254 1.00 0.00 O ATOM 146 N LYS 32 -50.834 -20.958 30.061 1.00 0.00 N ATOM 147 CA LYS 32 -50.253 -22.023 30.827 1.00 0.00 C ATOM 148 CB LYS 32 -50.054 -21.656 32.310 1.00 0.00 C ATOM 149 CG LYS 32 -51.338 -21.230 33.028 1.00 0.00 C ATOM 150 CD LYS 32 -51.168 -21.042 34.539 1.00 0.00 C ATOM 151 CE LYS 32 -50.352 -19.802 34.916 1.00 0.00 C ATOM 152 NZ LYS 32 -48.917 -20.019 34.621 1.00 0.00 N ATOM 153 C LYS 32 -51.159 -23.211 30.745 1.00 0.00 C ATOM 154 O LYS 32 -52.363 -23.099 30.970 1.00 0.00 O ATOM 155 N THR 33 -50.594 -24.382 30.384 1.00 0.00 N ATOM 156 CA THR 33 -51.352 -25.597 30.319 1.00 0.00 C ATOM 157 CB THR 33 -51.615 -26.065 28.919 1.00 0.00 C ATOM 158 OG1 THR 33 -50.392 -26.381 28.271 1.00 0.00 O ATOM 159 CG2 THR 33 -52.336 -24.938 28.161 1.00 0.00 C ATOM 160 C THR 33 -50.513 -26.634 30.983 1.00 0.00 C ATOM 161 O THR 33 -49.295 -26.652 30.795 1.00 0.00 O ATOM 162 N LYS 34 -51.147 -27.540 31.760 1.00 0.00 N ATOM 163 CA LYS 34 -50.364 -28.490 32.490 1.00 0.00 C ATOM 164 CB LYS 34 -49.488 -29.391 31.595 1.00 0.00 C ATOM 165 CG LYS 34 -50.293 -30.286 30.646 1.00 0.00 C ATOM 166 CD LYS 34 -51.190 -31.312 31.342 1.00 0.00 C ATOM 167 CE LYS 34 -50.485 -32.635 31.646 1.00 0.00 C ATOM 168 NZ LYS 34 -51.454 -33.617 32.180 1.00 0.00 N ATOM 169 C LYS 34 -49.488 -27.635 33.336 1.00 0.00 C ATOM 170 O LYS 34 -49.856 -26.508 33.660 1.00 0.00 O ATOM 171 N LYS 35 -48.328 -28.146 33.772 1.00 0.00 N ATOM 172 CA LYS 35 -47.467 -27.228 34.449 1.00 0.00 C ATOM 173 CB LYS 35 -46.779 -27.809 35.698 1.00 0.00 C ATOM 174 CG LYS 35 -47.709 -27.990 36.899 1.00 0.00 C ATOM 175 CD LYS 35 -47.100 -28.832 38.024 1.00 0.00 C ATOM 176 CE LYS 35 -46.091 -28.074 38.893 1.00 0.00 C ATOM 177 NZ LYS 35 -45.578 -28.962 39.962 1.00 0.00 N ATOM 178 C LYS 35 -46.385 -26.882 33.481 1.00 0.00 C ATOM 179 O LYS 35 -45.202 -27.039 33.774 1.00 0.00 O ATOM 180 N TYR 36 -46.776 -26.391 32.288 1.00 0.00 N ATOM 181 CA TYR 36 -45.816 -25.985 31.306 1.00 0.00 C ATOM 182 CB TYR 36 -45.735 -26.898 30.068 1.00 0.00 C ATOM 183 CG TYR 36 -45.039 -28.158 30.462 1.00 0.00 C ATOM 184 CD1 TYR 36 -45.701 -29.156 31.136 1.00 0.00 C ATOM 185 CD2 TYR 36 -43.712 -28.338 30.143 1.00 0.00 C ATOM 186 CE1 TYR 36 -45.046 -30.313 31.489 1.00 0.00 C ATOM 187 CE2 TYR 36 -43.053 -29.492 30.492 1.00 0.00 C ATOM 188 CZ TYR 36 -43.721 -30.483 31.167 1.00 0.00 C ATOM 189 OH TYR 36 -43.046 -31.670 31.526 1.00 0.00 O ATOM 190 C TYR 36 -46.209 -24.626 30.847 1.00 0.00 C ATOM 191 O TYR 36 -47.392 -24.326 30.700 1.00 0.00 O ATOM 192 N TRP 37 -45.210 -23.753 30.630 1.00 0.00 N ATOM 193 CA TRP 37 -45.543 -22.431 30.220 1.00 0.00 C ATOM 194 CB TRP 37 -44.513 -21.399 30.701 1.00 0.00 C ATOM 195 CG TRP 37 -45.058 -19.997 30.770 1.00 0.00 C ATOM 196 CD2 TRP 37 -44.901 -19.181 31.938 1.00 0.00 C ATOM 197 CD1 TRP 37 -45.820 -19.284 29.894 1.00 0.00 C ATOM 198 NE1 TRP 37 -46.159 -18.071 30.452 1.00 0.00 N ATOM 199 CE2 TRP 37 -45.598 -17.996 31.710 1.00 0.00 C ATOM 200 CE3 TRP 37 -44.247 -19.412 33.114 1.00 0.00 C ATOM 201 CZ2 TRP 37 -45.651 -17.023 32.665 1.00 0.00 C ATOM 202 CZ3 TRP 37 -44.279 -18.416 34.064 1.00 0.00 C ATOM 203 CH2 TRP 37 -44.969 -17.244 33.842 1.00 0.00 C ATOM 204 C TRP 37 -45.563 -22.483 28.730 1.00 0.00 C ATOM 205 O TRP 37 -44.677 -23.068 28.107 1.00 0.00 O ATOM 206 N VAL 38 -46.588 -21.879 28.106 1.00 0.00 N ATOM 207 CA VAL 38 -46.645 -21.975 26.683 1.00 0.00 C ATOM 208 CB VAL 38 -47.890 -22.656 26.192 1.00 0.00 C ATOM 209 CG1 VAL 38 -47.870 -22.689 24.654 1.00 0.00 C ATOM 210 CG2 VAL 38 -47.960 -24.049 26.838 1.00 0.00 C ATOM 211 C VAL 38 -46.607 -20.593 26.126 1.00 0.00 C ATOM 212 O VAL 38 -46.981 -19.621 26.780 1.00 0.00 O ATOM 213 N TYR 39 -46.105 -20.495 24.885 1.00 0.00 N ATOM 214 CA TYR 39 -45.968 -19.266 24.173 1.00 0.00 C ATOM 215 CB TYR 39 -44.510 -19.100 23.693 1.00 0.00 C ATOM 216 CG TYR 39 -44.277 -17.841 22.929 1.00 0.00 C ATOM 217 CD1 TYR 39 -43.903 -16.688 23.578 1.00 0.00 C ATOM 218 CD2 TYR 39 -44.412 -17.821 21.560 1.00 0.00 C ATOM 219 CE1 TYR 39 -43.674 -15.532 22.873 1.00 0.00 C ATOM 220 CE2 TYR 39 -44.184 -16.665 20.847 1.00 0.00 C ATOM 221 CZ TYR 39 -43.811 -15.520 21.506 1.00 0.00 C ATOM 222 OH TYR 39 -43.575 -14.331 20.782 1.00 0.00 O ATOM 223 C TYR 39 -46.828 -19.430 22.970 1.00 0.00 C ATOM 224 O TYR 39 -46.731 -20.453 22.292 1.00 0.00 O ATOM 225 N GLN 40 -47.710 -18.445 22.695 1.00 0.00 N ATOM 226 CA GLN 40 -48.506 -18.549 21.510 1.00 0.00 C ATOM 227 CB GLN 40 -49.450 -17.352 21.296 1.00 0.00 C ATOM 228 CG GLN 40 -50.400 -17.519 20.110 1.00 0.00 C ATOM 229 CD GLN 40 -51.354 -16.331 20.103 1.00 0.00 C ATOM 230 OE1 GLN 40 -50.936 -15.181 19.991 1.00 0.00 O ATOM 231 NE2 GLN 40 -52.677 -16.616 20.243 1.00 0.00 N ATOM 232 C GLN 40 -47.472 -18.561 20.456 1.00 0.00 C ATOM 233 O GLN 40 -46.816 -17.554 20.186 1.00 0.00 O ATOM 234 N GLY 41 -47.314 -19.743 19.846 1.00 0.00 N ATOM 235 CA GLY 41 -46.207 -20.002 18.994 1.00 0.00 C ATOM 236 C GLY 41 -45.788 -21.394 19.379 1.00 0.00 C ATOM 237 O GLY 41 -46.374 -22.366 18.904 1.00 0.00 O ATOM 238 N LYS 42 -44.757 -21.515 20.256 1.00 0.00 N ATOM 239 CA LYS 42 -44.241 -22.790 20.692 1.00 0.00 C ATOM 240 CB LYS 42 -42.818 -23.061 20.185 1.00 0.00 C ATOM 241 CG LYS 42 -42.752 -23.115 18.660 1.00 0.00 C ATOM 242 CD LYS 42 -41.337 -22.984 18.114 1.00 0.00 C ATOM 243 CE LYS 42 -40.688 -21.649 18.466 1.00 0.00 C ATOM 244 NZ LYS 42 -39.297 -21.625 17.971 1.00 0.00 N ATOM 245 C LYS 42 -44.181 -22.808 22.192 1.00 0.00 C ATOM 246 O LYS 42 -44.387 -21.795 22.858 1.00 0.00 O ATOM 247 N PRO 43 -43.944 -23.976 22.733 1.00 0.00 N ATOM 248 CA PRO 43 -43.849 -24.101 24.164 1.00 0.00 C ATOM 249 CD PRO 43 -44.531 -25.164 22.133 1.00 0.00 C ATOM 250 CB PRO 43 -44.103 -25.572 24.481 1.00 0.00 C ATOM 251 CG PRO 43 -44.970 -26.053 23.307 1.00 0.00 C ATOM 252 C PRO 43 -42.542 -23.597 24.688 1.00 0.00 C ATOM 253 O PRO 43 -41.548 -23.639 23.965 1.00 0.00 O ATOM 254 N VAL 44 -42.526 -23.128 25.952 1.00 0.00 N ATOM 255 CA VAL 44 -41.321 -22.645 26.562 1.00 0.00 C ATOM 256 CB VAL 44 -41.473 -21.301 27.215 1.00 0.00 C ATOM 257 CG1 VAL 44 -42.473 -21.439 28.375 1.00 0.00 C ATOM 258 CG2 VAL 44 -40.085 -20.797 27.651 1.00 0.00 C ATOM 259 C VAL 44 -40.972 -23.624 27.636 1.00 0.00 C ATOM 260 O VAL 44 -41.841 -24.119 28.348 1.00 0.00 O ATOM 261 N MET 45 -39.673 -23.934 27.784 1.00 0.00 N ATOM 262 CA MET 45 -39.298 -24.930 28.742 1.00 0.00 C ATOM 263 CB MET 45 -38.354 -25.986 28.147 1.00 0.00 C ATOM 264 CG MET 45 -38.991 -26.701 26.955 1.00 0.00 C ATOM 265 SD MET 45 -40.524 -27.587 27.360 1.00 0.00 S ATOM 266 CE MET 45 -39.693 -29.104 27.911 1.00 0.00 C ATOM 267 C MET 45 -38.605 -24.264 29.884 1.00 0.00 C ATOM 268 O MET 45 -38.122 -23.134 29.794 1.00 0.00 O ATOM 269 N PRO 46 -38.596 -24.971 30.976 1.00 0.00 N ATOM 270 CA PRO 46 -37.954 -24.483 32.164 1.00 0.00 C ATOM 271 CD PRO 46 -39.726 -25.834 31.287 1.00 0.00 C ATOM 272 CB PRO 46 -38.469 -25.350 33.308 1.00 0.00 C ATOM 273 CG PRO 46 -39.854 -25.814 32.819 1.00 0.00 C ATOM 274 C PRO 46 -36.475 -24.542 31.972 1.00 0.00 C ATOM 275 O PRO 46 -36.010 -25.270 31.097 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 275 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 91.30 45.3 64 94.1 68 ARMSMC SECONDARY STRUCTURE . . 91.17 55.9 34 100.0 34 ARMSMC SURFACE . . . . . . . . 95.77 42.3 52 92.9 56 ARMSMC BURIED . . . . . . . . 68.60 58.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.74 40.0 30 93.8 32 ARMSSC1 RELIABLE SIDE CHAINS . 93.99 40.7 27 93.1 29 ARMSSC1 SECONDARY STRUCTURE . . 99.90 41.2 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 99.89 36.0 25 92.6 27 ARMSSC1 BURIED . . . . . . . . 62.97 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 59.69 65.2 23 92.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 63.66 60.0 20 95.2 21 ARMSSC2 SECONDARY STRUCTURE . . 39.73 76.9 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 55.50 70.0 20 90.9 22 ARMSSC2 BURIED . . . . . . . . 82.32 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.98 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 81.60 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 13.36 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 80.98 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.34 66.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 65.34 66.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 85.32 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 65.34 66.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.92 (Number of atoms: 33) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.92 33 94.3 35 CRMSCA CRN = ALL/NP . . . . . 0.1492 CRMSCA SECONDARY STRUCTURE . . 5.11 17 100.0 17 CRMSCA SURFACE . . . . . . . . 5.02 27 93.1 29 CRMSCA BURIED . . . . . . . . 4.45 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.02 163 94.2 173 CRMSMC SECONDARY STRUCTURE . . 5.15 85 100.0 85 CRMSMC SURFACE . . . . . . . . 5.11 133 93.0 143 CRMSMC BURIED . . . . . . . . 4.61 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.00 143 91.7 156 CRMSSC RELIABLE SIDE CHAINS . 6.88 127 93.4 136 CRMSSC SECONDARY STRUCTURE . . 7.32 84 100.0 84 CRMSSC SURFACE . . . . . . . . 7.23 114 89.8 127 CRMSSC BURIED . . . . . . . . 6.03 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.06 275 92.9 296 CRMSALL SECONDARY STRUCTURE . . 6.35 152 100.0 152 CRMSALL SURFACE . . . . . . . . 6.20 222 91.4 243 CRMSALL BURIED . . . . . . . . 5.40 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.544 1.000 0.500 33 94.3 35 ERRCA SECONDARY STRUCTURE . . 4.730 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 4.670 1.000 0.500 27 93.1 29 ERRCA BURIED . . . . . . . . 3.976 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.586 1.000 0.500 163 94.2 173 ERRMC SECONDARY STRUCTURE . . 4.740 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 4.703 1.000 0.500 133 93.0 143 ERRMC BURIED . . . . . . . . 4.064 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.381 1.000 0.500 143 91.7 156 ERRSC RELIABLE SIDE CHAINS . 6.326 1.000 0.500 127 93.4 136 ERRSC SECONDARY STRUCTURE . . 6.689 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 6.651 1.000 0.500 114 89.8 127 ERRSC BURIED . . . . . . . . 5.321 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.440 1.000 0.500 275 92.9 296 ERRALL SECONDARY STRUCTURE . . 5.728 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 5.606 1.000 0.500 222 91.4 243 ERRALL BURIED . . . . . . . . 4.744 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 10 23 33 33 35 DISTCA CA (P) 0.00 5.71 28.57 65.71 94.29 35 DISTCA CA (RMS) 0.00 1.85 2.51 3.58 4.92 DISTCA ALL (N) 1 11 56 140 256 275 296 DISTALL ALL (P) 0.34 3.72 18.92 47.30 86.49 296 DISTALL ALL (RMS) 0.71 1.71 2.45 3.48 5.42 DISTALL END of the results output