####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS457_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS457_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 12 - 31 4.38 10.21 LONGEST_CONTINUOUS_SEGMENT: 20 13 - 32 4.88 9.88 LONGEST_CONTINUOUS_SEGMENT: 20 18 - 37 4.88 10.18 LONGEST_CONTINUOUS_SEGMENT: 20 23 - 42 4.94 12.51 LONGEST_CONTINUOUS_SEGMENT: 20 24 - 43 4.88 12.64 LCS_AVERAGE: 56.65 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 14 - 27 1.63 11.17 LCS_AVERAGE: 27.27 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 16 - 27 0.94 12.05 LCS_AVERAGE: 20.98 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 3 20 0 3 3 4 4 4 5 5 7 9 10 12 16 17 21 23 23 25 26 26 LCS_GDT F 13 F 13 3 10 20 0 3 5 6 7 8 11 13 16 18 20 21 21 22 24 24 24 25 27 29 LCS_GDT H 14 H 14 6 14 20 4 5 6 9 13 14 15 16 17 18 20 21 21 22 24 24 24 25 27 27 LCS_GDT Y 15 Y 15 7 14 20 4 5 8 13 13 14 15 16 17 18 20 21 21 22 24 24 24 25 27 29 LCS_GDT T 16 T 16 12 14 20 4 6 10 13 13 14 15 16 17 18 20 21 21 22 24 24 24 25 27 29 LCS_GDT V 17 V 17 12 14 20 8 10 11 13 13 14 15 16 17 18 20 21 21 22 24 24 24 26 27 29 LCS_GDT T 18 T 18 12 14 20 8 10 11 13 13 14 15 16 17 18 20 21 21 22 24 24 24 26 27 29 LCS_GDT D 19 D 19 12 14 20 8 10 11 13 13 14 15 16 17 18 20 21 21 22 24 24 24 26 27 29 LCS_GDT I 20 I 20 12 14 20 8 10 11 13 13 14 15 16 17 18 20 21 21 22 24 24 24 26 27 29 LCS_GDT K 21 K 21 12 14 20 8 10 11 13 13 14 15 16 17 18 20 21 21 22 24 24 24 26 27 29 LCS_GDT D 22 D 22 12 14 20 8 10 11 13 13 14 15 16 17 18 20 21 21 22 24 24 24 26 27 29 LCS_GDT L 23 L 23 12 14 20 8 10 11 13 13 14 15 16 17 18 20 21 21 22 24 24 24 26 27 29 LCS_GDT T 24 T 24 12 14 20 8 10 11 13 13 14 15 16 17 18 20 21 21 22 24 24 24 26 27 29 LCS_GDT K 25 K 25 12 14 20 7 10 11 13 13 14 15 16 17 18 20 21 21 22 24 24 24 26 27 29 LCS_GDT L 26 L 26 12 14 20 5 9 11 13 13 14 15 16 17 18 20 20 20 22 24 24 24 26 27 29 LCS_GDT G 27 G 27 12 14 20 5 10 11 13 13 14 15 16 17 18 18 19 20 21 23 23 24 26 27 29 LCS_GDT A 28 A 28 3 4 20 3 3 3 4 10 12 15 16 17 18 20 21 21 22 24 24 24 26 27 29 LCS_GDT I 29 I 29 3 4 20 2 4 5 6 7 9 11 13 16 17 20 21 21 22 24 24 24 26 27 29 LCS_GDT Y 30 Y 30 3 3 20 3 3 5 5 7 9 9 11 12 16 20 21 21 22 24 24 24 26 27 29 LCS_GDT D 31 D 31 4 4 20 4 4 5 6 7 9 9 11 13 17 20 21 21 22 24 24 24 26 27 29 LCS_GDT K 32 K 32 4 6 20 4 4 4 4 6 8 9 11 12 14 16 17 19 21 24 24 24 26 27 29 LCS_GDT T 33 T 33 4 6 20 4 4 4 5 7 8 9 11 12 14 16 17 19 21 24 24 24 26 26 29 LCS_GDT K 34 K 34 4 6 20 4 4 5 5 7 9 9 11 12 14 17 21 21 22 24 24 24 26 27 29 LCS_GDT K 35 K 35 7 8 20 3 6 8 9 9 9 9 11 12 14 17 21 21 22 24 24 24 26 27 29 LCS_GDT Y 36 Y 36 7 8 20 3 6 8 9 9 9 9 11 13 17 20 21 21 22 24 24 24 26 27 29 LCS_GDT W 37 W 37 7 8 20 3 6 8 9 9 12 15 16 17 18 20 21 21 22 24 24 24 26 27 29 LCS_GDT V 38 V 38 7 8 20 4 6 8 9 9 14 15 16 17 18 18 19 20 21 23 23 24 26 27 29 LCS_GDT Y 39 Y 39 7 8 20 4 6 8 9 9 9 9 11 12 14 16 17 19 21 23 23 23 26 26 29 LCS_GDT Q 40 Q 40 7 8 20 4 6 8 9 9 9 9 11 12 14 16 17 19 21 23 23 23 25 26 26 LCS_GDT G 41 G 41 7 8 20 4 6 8 9 9 9 9 10 10 13 16 17 19 21 23 23 23 25 26 26 LCS_GDT K 42 K 42 4 8 20 3 4 5 7 8 8 9 11 12 14 16 17 19 21 23 23 23 26 26 29 LCS_GDT P 43 P 43 4 7 20 3 4 5 6 6 7 7 13 15 17 18 18 20 21 23 23 24 26 27 29 LCS_GDT V 44 V 44 4 7 18 3 4 4 6 6 6 7 10 12 13 15 16 17 17 20 21 23 26 27 29 LCS_GDT M 45 M 45 4 7 18 2 4 5 6 6 6 8 10 12 13 15 16 16 17 17 19 20 21 23 27 LCS_GDT P 46 P 46 4 7 18 1 4 5 6 6 6 7 7 7 11 14 16 16 16 17 17 17 19 19 20 LCS_AVERAGE LCS_A: 34.97 ( 20.98 27.27 56.65 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 10 11 13 13 14 15 16 17 18 20 21 21 22 24 24 24 26 27 29 GDT PERCENT_AT 22.86 28.57 31.43 37.14 37.14 40.00 42.86 45.71 48.57 51.43 57.14 60.00 60.00 62.86 68.57 68.57 68.57 74.29 77.14 82.86 GDT RMS_LOCAL 0.39 0.63 0.68 1.15 1.15 1.63 2.00 2.37 2.54 2.80 3.95 4.40 4.40 4.54 5.06 5.06 5.06 6.19 6.20 6.81 GDT RMS_ALL_AT 12.80 12.60 12.57 11.85 11.85 11.17 10.75 10.31 10.24 10.13 9.69 10.13 10.13 10.00 10.28 10.28 10.28 9.21 8.98 8.73 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 11.015 0 0.529 1.532 17.709 0.476 0.190 LGA F 13 F 13 6.257 0 0.655 1.329 7.457 21.190 35.455 LGA H 14 H 14 3.292 0 0.601 1.029 9.651 56.190 30.095 LGA Y 15 Y 15 2.171 0 0.174 0.725 6.883 67.262 43.849 LGA T 16 T 16 0.990 0 0.283 0.438 1.925 83.810 79.116 LGA V 17 V 17 1.063 0 0.194 0.285 2.136 83.690 79.116 LGA T 18 T 18 2.195 0 0.013 0.131 3.443 70.833 62.925 LGA D 19 D 19 2.171 0 0.061 0.247 4.065 70.833 58.036 LGA I 20 I 20 1.275 0 0.010 0.084 1.896 83.690 79.345 LGA K 21 K 21 0.936 0 0.049 1.113 6.135 92.857 64.974 LGA D 22 D 22 0.567 0 0.126 0.134 1.809 92.857 86.071 LGA L 23 L 23 1.863 0 0.038 0.850 2.313 72.976 73.095 LGA T 24 T 24 2.253 0 0.013 1.133 3.830 64.881 64.150 LGA K 25 K 25 1.875 0 0.114 0.564 3.628 68.929 60.212 LGA L 26 L 26 1.661 0 0.042 1.403 3.493 72.857 68.988 LGA G 27 G 27 2.699 0 0.301 0.301 2.699 75.714 75.714 LGA A 28 A 28 4.755 0 0.616 0.598 7.008 30.833 27.333 LGA I 29 I 29 9.780 0 0.626 1.509 14.196 1.905 0.952 LGA Y 30 Y 30 12.121 0 0.604 1.397 16.824 0.000 0.000 LGA D 31 D 31 13.856 0 0.584 1.262 18.088 0.000 0.000 LGA K 32 K 32 20.818 0 0.201 0.901 24.309 0.000 0.000 LGA T 33 T 33 22.725 0 0.123 0.529 25.046 0.000 0.000 LGA K 34 K 34 18.973 0 0.174 0.512 19.765 0.000 0.000 LGA K 35 K 35 17.791 0 0.582 0.895 24.922 0.000 0.000 LGA Y 36 Y 36 11.770 0 0.126 1.360 15.397 1.905 0.635 LGA W 37 W 37 5.208 0 0.045 1.256 9.170 24.524 26.633 LGA V 38 V 38 3.365 0 0.012 0.154 6.855 50.000 42.857 LGA Y 39 Y 39 8.571 0 0.028 1.222 15.275 4.048 1.786 LGA Q 40 Q 40 15.725 0 0.087 0.519 20.651 0.000 0.000 LGA G 41 G 41 13.738 0 0.443 0.443 13.859 0.000 0.000 LGA K 42 K 42 8.983 0 0.074 0.673 14.816 3.690 1.958 LGA P 43 P 43 7.746 0 0.036 0.313 8.874 5.476 4.354 LGA V 44 V 44 10.865 0 0.413 0.502 13.863 0.357 0.204 LGA M 45 M 45 15.172 0 0.250 0.799 18.492 0.000 0.000 LGA P 46 P 46 18.745 0 0.054 0.167 21.994 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 8.687 8.757 9.335 34.337 30.515 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 16 2.32 45.000 40.826 0.661 LGA_LOCAL RMSD: 2.319 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.451 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 8.687 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.267451 * X + -0.003171 * Y + 0.963566 * Z + -48.835514 Y_new = -0.402094 * X + 0.908399 * Y + 0.114597 * Z + -25.170137 Z_new = -0.875666 * X + -0.418093 * Y + 0.241677 * Z + 18.006144 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.983847 1.066813 -1.046676 [DEG: -56.3703 61.1239 -59.9701 ] ZXZ: 1.689170 1.326702 -2.016248 [DEG: 96.7823 76.0145 -115.5225 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS457_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS457_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 16 2.32 40.826 8.69 REMARK ---------------------------------------------------------- MOLECULE T0548TS457_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3l2q_A ATOM 165 N HIS 12 -37.588 -22.026 28.265 1.00 0.50 N ATOM 166 CA HIS 12 -38.124 -20.704 27.966 1.00 0.50 C ATOM 167 C HIS 12 -39.340 -20.394 28.830 1.00 0.50 C ATOM 168 O HIS 12 -39.332 -19.443 29.611 1.00 0.50 O ATOM 169 CB HIS 12 -38.504 -20.603 26.482 1.00 0.50 C ATOM 170 CG HIS 12 -37.320 -20.662 25.565 1.00 0.50 C ATOM 171 ND1 HIS 12 -37.441 -20.761 24.196 1.00 0.50 N ATOM 172 CD2 HIS 12 -35.991 -20.632 25.836 1.00 0.50 C ATOM 173 CE1 HIS 12 -36.229 -20.791 23.661 1.00 0.50 C ATOM 174 NE2 HIS 12 -35.333 -20.713 24.633 1.00 0.50 N ATOM 182 N PHE 13 -40.385 -21.202 28.683 1.00 0.50 N ATOM 183 CA PHE 13 -41.611 -21.014 29.449 1.00 0.50 C ATOM 184 C PHE 13 -41.373 -21.247 30.935 1.00 0.50 C ATOM 185 O PHE 13 -42.239 -20.965 31.764 1.00 0.50 O ATOM 186 CB PHE 13 -42.709 -21.961 28.946 1.00 0.50 C ATOM 187 CG PHE 13 -42.375 -23.422 29.119 1.00 0.50 C ATOM 188 CD1 PHE 13 -42.619 -24.066 30.327 1.00 0.50 C ATOM 189 CD2 PHE 13 -41.817 -24.146 28.071 1.00 0.50 C ATOM 190 CE1 PHE 13 -42.311 -25.415 30.490 1.00 0.50 C ATOM 191 CE2 PHE 13 -41.505 -25.495 28.225 1.00 0.50 C ATOM 192 CZ PHE 13 -41.753 -26.127 29.436 1.00 0.50 C ATOM 202 N HIS 14 -40.195 -21.763 31.267 1.00 0.50 N ATOM 203 CA HIS 14 -39.841 -22.035 32.654 1.00 0.50 C ATOM 204 C HIS 14 -39.221 -20.811 33.315 1.00 0.50 C ATOM 205 O HIS 14 -39.004 -20.790 34.526 1.00 0.50 O ATOM 206 CB HIS 14 -38.866 -23.217 32.736 1.00 0.50 C ATOM 207 CG HIS 14 -39.474 -24.515 32.296 1.00 0.50 C ATOM 208 ND1 HIS 14 -38.727 -25.649 32.064 1.00 0.50 N ATOM 209 CD2 HIS 14 -40.767 -24.846 32.052 1.00 0.50 C ATOM 210 CE1 HIS 14 -39.540 -26.629 31.694 1.00 0.50 C ATOM 211 NE2 HIS 14 -40.780 -26.168 31.679 1.00 0.50 N ATOM 219 N TYR 15 -38.936 -19.791 32.512 1.00 0.50 N ATOM 220 CA TYR 15 -38.340 -18.561 33.016 1.00 0.50 C ATOM 221 C TYR 15 -38.573 -18.410 34.514 1.00 0.50 C ATOM 222 O TYR 15 -38.876 -19.382 35.206 1.00 0.50 O ATOM 223 CB TYR 15 -38.917 -17.345 32.277 1.00 0.50 C ATOM 224 CG TYR 15 -38.708 -17.390 30.779 1.00 0.50 C ATOM 225 CD1 TYR 15 -37.590 -16.800 30.195 1.00 0.50 C ATOM 226 CD2 TYR 15 -39.632 -18.024 29.951 1.00 0.50 C ATOM 227 CE1 TYR 15 -37.395 -16.837 28.817 1.00 0.50 C ATOM 228 CE2 TYR 15 -39.447 -18.067 28.573 1.00 0.50 C ATOM 229 CZ TYR 15 -38.328 -17.472 28.015 1.00 0.50 C ATOM 230 OH TYR 15 -38.143 -17.514 26.652 1.00 0.50 H ATOM 240 N THR 16 -38.429 -17.186 35.010 1.00 0.50 N ATOM 241 CA THR 16 -38.624 -16.905 36.427 1.00 0.50 C ATOM 242 C THR 16 -39.305 -15.559 36.633 1.00 0.50 C ATOM 243 O THR 16 -40.460 -15.371 36.251 1.00 0.50 O ATOM 244 CB THR 16 -37.278 -16.917 37.188 1.00 0.50 C ATOM 245 OG1 THR 16 -36.426 -15.907 36.632 1.00 0.50 O ATOM 246 CG2 THR 16 -36.592 -18.271 37.070 1.00 0.50 C ATOM 254 N VAL 17 -38.584 -14.623 37.244 1.00 0.50 N ATOM 255 CA VAL 17 -39.119 -13.292 37.503 1.00 0.50 C ATOM 256 C VAL 17 -38.824 -12.346 36.346 1.00 0.50 C ATOM 257 O VAL 17 -39.637 -12.191 35.436 1.00 0.50 O ATOM 258 CB VAL 17 -38.543 -12.700 38.808 1.00 0.50 C ATOM 259 CG1 VAL 17 -39.111 -11.309 39.069 1.00 0.50 C ATOM 260 CG2 VAL 17 -38.842 -13.621 39.987 1.00 0.50 C ATOM 270 N THR 18 -37.656 -11.713 36.389 1.00 0.50 N ATOM 271 CA THR 18 -37.251 -10.780 35.344 1.00 0.50 C ATOM 272 C THR 18 -37.254 -11.450 33.976 1.00 0.50 C ATOM 273 O THR 18 -37.780 -10.901 33.008 1.00 0.50 O ATOM 274 CB THR 18 -35.844 -10.207 35.626 1.00 0.50 C ATOM 275 OG1 THR 18 -35.880 -9.483 36.863 1.00 0.50 O ATOM 276 CG2 THR 18 -35.400 -9.269 34.511 1.00 0.50 C ATOM 284 N ASP 19 -36.664 -12.638 33.903 1.00 0.50 N ATOM 285 CA ASP 19 -36.621 -13.396 32.658 1.00 0.50 C ATOM 286 C ASP 19 -38.019 -13.608 32.093 1.00 0.50 C ATOM 287 O ASP 19 -38.228 -13.530 30.883 1.00 0.50 O ATOM 288 CB ASP 19 -35.936 -14.748 32.880 1.00 0.50 C ATOM 289 CG ASP 19 -34.554 -14.622 33.493 1.00 0.50 C ATOM 290 OD1 ASP 19 -33.666 -13.992 32.880 1.00 0.50 O ATOM 291 OD2 ASP 19 -34.352 -15.165 34.602 1.00 0.50 O ATOM 296 N ILE 20 -38.974 -13.879 32.976 1.00 0.50 N ATOM 297 CA ILE 20 -40.353 -14.116 32.565 1.00 0.50 C ATOM 298 C ILE 20 -40.907 -12.929 31.788 1.00 0.50 C ATOM 299 O ILE 20 -41.626 -13.100 30.804 1.00 0.50 O ATOM 300 CB ILE 20 -41.259 -14.399 33.787 1.00 0.50 C ATOM 301 CG1 ILE 20 -40.882 -15.739 34.429 1.00 0.50 C ATOM 302 CG2 ILE 20 -42.733 -14.390 33.380 1.00 0.50 C ATOM 303 CD1 ILE 20 -41.353 -15.884 35.868 1.00 0.50 C ATOM 315 N LYS 21 -40.569 -11.724 32.236 1.00 0.50 N ATOM 316 CA LYS 21 -41.021 -10.506 31.575 1.00 0.50 C ATOM 317 C LYS 21 -40.453 -10.402 30.165 1.00 0.50 C ATOM 318 O LYS 21 -41.128 -9.937 29.247 1.00 0.50 O ATOM 319 CB LYS 21 -40.617 -9.274 32.389 1.00 0.50 C ATOM 320 CG LYS 21 -41.383 -9.122 33.694 1.00 0.50 C ATOM 321 CD LYS 21 -40.942 -7.879 34.456 1.00 0.50 C ATOM 322 CE LYS 21 -41.682 -7.737 35.781 1.00 0.50 C ATOM 323 NZ LYS 21 -41.235 -6.535 36.539 1.00 0.50 N ATOM 337 N ASP 22 -39.209 -10.839 29.999 1.00 0.50 N ATOM 338 CA ASP 22 -38.582 -10.885 28.684 1.00 0.50 C ATOM 339 C ASP 22 -39.315 -11.847 27.757 1.00 0.50 C ATOM 340 O ASP 22 -39.776 -11.458 26.684 1.00 0.50 O ATOM 341 CB ASP 22 -37.111 -11.296 28.808 1.00 0.50 C ATOM 342 CG ASP 22 -36.247 -10.230 29.455 1.00 0.50 C ATOM 343 OD1 ASP 22 -36.713 -9.084 29.626 1.00 0.50 O ATOM 344 OD2 ASP 22 -35.084 -10.545 29.795 1.00 0.50 O ATOM 349 N LEU 23 -39.418 -13.102 28.178 1.00 0.50 N ATOM 350 CA LEU 23 -40.107 -14.119 27.392 1.00 0.50 C ATOM 351 C LEU 23 -41.537 -13.699 27.080 1.00 0.50 C ATOM 352 O LEU 23 -42.021 -13.891 25.965 1.00 0.50 O ATOM 353 CB LEU 23 -40.114 -15.456 28.142 1.00 0.50 C ATOM 354 CG LEU 23 -40.515 -16.688 27.327 1.00 0.50 C ATOM 355 CD1 LEU 23 -40.185 -17.958 28.099 1.00 0.50 C ATOM 356 CD2 LEU 23 -42.001 -16.636 26.996 1.00 0.50 C ATOM 368 N THR 24 -42.209 -13.124 28.071 1.00 0.50 N ATOM 369 CA THR 24 -43.585 -12.672 27.902 1.00 0.50 C ATOM 370 C THR 24 -43.714 -11.728 26.715 1.00 0.50 C ATOM 371 O THR 24 -44.682 -11.797 25.956 1.00 0.50 O ATOM 372 CB THR 24 -44.098 -11.962 29.175 1.00 0.50 C ATOM 373 OG1 THR 24 -44.077 -12.893 30.263 1.00 0.50 O ATOM 374 CG2 THR 24 -45.518 -11.446 28.983 1.00 0.50 C ATOM 382 N LYS 25 -42.733 -10.845 26.557 1.00 0.50 N ATOM 383 CA LYS 25 -42.719 -9.907 25.442 1.00 0.50 C ATOM 384 C LYS 25 -42.718 -10.638 24.106 1.00 0.50 C ATOM 385 O LYS 25 -43.449 -10.271 23.186 1.00 0.50 O ATOM 386 CB LYS 25 -41.497 -8.988 25.532 1.00 0.50 C ATOM 387 CG LYS 25 -41.428 -7.949 24.424 1.00 0.50 C ATOM 388 CD LYS 25 -40.233 -7.021 24.605 1.00 0.50 C ATOM 389 CE LYS 25 -40.130 -6.008 23.472 1.00 0.50 C ATOM 390 NZ LYS 25 -38.947 -5.115 23.635 1.00 0.50 N ATOM 404 N LEU 26 -41.893 -11.674 24.005 1.00 0.50 N ATOM 405 CA LEU 26 -41.815 -12.477 22.791 1.00 0.50 C ATOM 406 C LEU 26 -43.163 -13.104 22.458 1.00 0.50 C ATOM 407 O LEU 26 -43.474 -13.346 21.292 1.00 0.50 O ATOM 408 CB LEU 26 -40.758 -13.576 22.948 1.00 0.50 C ATOM 409 CG LEU 26 -39.302 -13.110 23.019 1.00 0.50 C ATOM 410 CD1 LEU 26 -38.389 -14.286 23.342 1.00 0.50 C ATOM 411 CD2 LEU 26 -38.893 -12.466 21.701 1.00 0.50 C ATOM 423 N GLY 27 -43.958 -13.367 23.490 1.00 0.50 N ATOM 424 CA GLY 27 -45.280 -13.954 23.307 1.00 0.50 C ATOM 425 C GLY 27 -46.220 -12.986 22.600 1.00 0.50 C ATOM 426 O GLY 27 -46.990 -13.383 21.725 1.00 0.50 O ATOM 430 N ALA 28 -46.153 -11.717 22.985 1.00 0.50 N ATOM 431 CA ALA 28 -46.974 -10.683 22.366 1.00 0.50 C ATOM 432 C ALA 28 -46.664 -10.549 20.880 1.00 0.50 C ATOM 433 O ALA 28 -47.563 -10.348 20.064 1.00 0.50 O ATOM 434 CB ALA 28 -46.756 -9.346 23.068 1.00 0.50 C ATOM 440 N ILE 29 -45.385 -10.660 20.536 1.00 0.50 N ATOM 441 CA ILE 29 -44.958 -10.598 19.144 1.00 0.50 C ATOM 442 C ILE 29 -45.556 -11.741 18.333 1.00 0.50 C ATOM 443 O ILE 29 -45.910 -11.568 17.167 1.00 0.50 O ATOM 444 CB ILE 29 -43.416 -10.639 19.031 1.00 0.50 C ATOM 445 CG1 ILE 29 -42.806 -9.359 19.614 1.00 0.50 C ATOM 446 CG2 ILE 29 -42.986 -10.829 17.576 1.00 0.50 C ATOM 447 CD1 ILE 29 -41.296 -9.423 19.787 1.00 0.50 C ATOM 459 N TYR 30 -45.664 -12.909 18.956 1.00 0.50 N ATOM 460 CA TYR 30 -46.218 -14.083 18.294 1.00 0.50 C ATOM 461 C TYR 30 -47.658 -13.842 17.860 1.00 0.50 C ATOM 462 O TYR 30 -48.050 -14.199 16.749 1.00 0.50 O ATOM 463 CB TYR 30 -46.155 -15.302 19.225 1.00 0.50 C ATOM 464 CG TYR 30 -44.747 -15.771 19.516 1.00 0.50 C ATOM 465 CD1 TYR 30 -44.133 -16.732 18.716 1.00 0.50 C ATOM 466 CD2 TYR 30 -44.032 -15.251 20.593 1.00 0.50 C ATOM 467 CE1 TYR 30 -42.838 -17.168 18.982 1.00 0.50 C ATOM 468 CE2 TYR 30 -42.738 -15.679 20.868 1.00 0.50 C ATOM 469 CZ TYR 30 -42.150 -16.636 20.058 1.00 0.50 C ATOM 470 OH TYR 30 -40.868 -17.061 20.328 1.00 0.50 H ATOM 480 N ASP 31 -48.443 -13.234 18.743 1.00 0.50 N ATOM 481 CA ASP 31 -49.842 -12.944 18.452 1.00 0.50 C ATOM 482 C ASP 31 -49.999 -12.310 17.077 1.00 0.50 C ATOM 483 O ASP 31 -51.009 -12.510 16.402 1.00 0.50 O ATOM 484 CB ASP 31 -50.429 -12.020 19.524 1.00 0.50 C ATOM 485 CG ASP 31 -50.657 -12.717 20.852 1.00 0.50 C ATOM 486 OD1 ASP 31 -50.581 -13.962 20.912 1.00 0.50 O ATOM 487 OD2 ASP 31 -50.921 -12.008 21.849 1.00 0.50 O ATOM 492 N LYS 32 -48.995 -11.543 16.666 1.00 0.50 N ATOM 493 CA LYS 32 -49.020 -10.877 15.370 1.00 0.50 C ATOM 494 C LYS 32 -48.736 -11.860 14.241 1.00 0.50 C ATOM 495 O LYS 32 -48.991 -11.569 13.072 1.00 0.50 O ATOM 496 CB LYS 32 -47.999 -9.737 15.334 1.00 0.50 C ATOM 497 CG LYS 32 -48.419 -8.564 14.462 1.00 0.50 C ATOM 498 CD LYS 32 -47.397 -7.435 14.517 1.00 0.50 C ATOM 499 CE LYS 32 -47.932 -6.159 13.880 1.00 0.50 C ATOM 500 NZ LYS 32 -47.019 -5.002 14.109 1.00 0.50 N ATOM 514 N THR 33 -48.205 -13.024 14.596 1.00 0.50 N ATOM 515 CA THR 33 -47.885 -14.053 13.614 1.00 0.50 C ATOM 516 C THR 33 -48.898 -15.190 13.656 1.00 0.50 C ATOM 517 O THR 33 -48.824 -16.132 12.867 1.00 0.50 O ATOM 518 CB THR 33 -46.469 -14.625 13.848 1.00 0.50 C ATOM 519 OG1 THR 33 -46.410 -15.187 15.164 1.00 0.50 O ATOM 520 CG2 THR 33 -45.410 -13.538 13.719 1.00 0.50 C ATOM 528 N LYS 34 -49.845 -15.097 14.585 1.00 0.50 N ATOM 529 CA LYS 34 -50.876 -16.118 14.733 1.00 0.50 C ATOM 530 C LYS 34 -50.475 -17.160 15.770 1.00 0.50 C ATOM 531 O LYS 34 -51.273 -17.533 16.628 1.00 0.50 O ATOM 532 CB LYS 34 -51.149 -16.801 13.390 1.00 0.50 C ATOM 533 CG LYS 34 -52.252 -17.848 13.446 1.00 0.50 C ATOM 534 CD LYS 34 -52.536 -18.432 12.069 1.00 0.50 C ATOM 535 CE LYS 34 -53.646 -19.474 12.116 1.00 0.50 C ATOM 536 NZ LYS 34 -53.949 -20.021 10.762 1.00 0.50 N ATOM 550 N LYS 35 -49.233 -17.625 15.683 1.00 0.50 N ATOM 551 CA LYS 35 -48.724 -18.625 16.615 1.00 0.50 C ATOM 552 C LYS 35 -49.404 -18.508 17.973 1.00 0.50 C ATOM 553 O LYS 35 -50.631 -18.460 18.063 1.00 0.50 O ATOM 554 CB LYS 35 -47.209 -18.480 16.779 1.00 0.50 C ATOM 555 CG LYS 35 -46.428 -18.710 15.494 1.00 0.50 C ATOM 556 CD LYS 35 -46.543 -20.153 15.022 1.00 0.50 C ATOM 557 CE LYS 35 -45.709 -20.405 13.772 1.00 0.50 C ATOM 558 NZ LYS 35 -45.862 -21.805 13.280 1.00 0.50 N ATOM 572 N TYR 36 -48.599 -18.466 19.030 1.00 0.50 N ATOM 573 CA TYR 36 -49.120 -18.355 20.386 1.00 0.50 C ATOM 574 C TYR 36 -48.186 -19.017 21.392 1.00 0.50 C ATOM 575 O TYR 36 -47.855 -20.194 21.264 1.00 0.50 O ATOM 576 CB TYR 36 -50.514 -18.991 20.478 1.00 0.50 C ATOM 577 CG TYR 36 -51.524 -18.377 19.533 1.00 0.50 C ATOM 578 CD1 TYR 36 -52.340 -17.325 19.942 1.00 0.50 C ATOM 579 CD2 TYR 36 -51.661 -18.855 18.231 1.00 0.50 C ATOM 580 CE1 TYR 36 -53.271 -16.760 19.076 1.00 0.50 C ATOM 581 CE2 TYR 36 -52.588 -18.297 17.357 1.00 0.50 C ATOM 582 CZ TYR 36 -53.389 -17.252 17.788 1.00 0.50 C ATOM 583 OH TYR 36 -54.307 -16.698 16.924 1.00 0.50 H ATOM 593 N TRP 37 -47.765 -18.251 22.393 1.00 0.50 N ATOM 594 CA TRP 37 -46.868 -18.762 23.423 1.00 0.50 C ATOM 595 C TRP 37 -47.449 -18.545 24.815 1.00 0.50 C ATOM 596 O TRP 37 -48.369 -17.748 24.997 1.00 0.50 O ATOM 597 CB TRP 37 -45.495 -18.087 23.320 1.00 0.50 C ATOM 598 CG TRP 37 -45.533 -16.599 23.507 1.00 0.50 C ATOM 599 CD1 TRP 37 -45.768 -15.656 22.544 1.00 0.50 C ATOM 600 CD2 TRP 37 -45.327 -15.886 24.731 1.00 0.50 C ATOM 601 NE1 TRP 37 -45.721 -14.398 23.098 1.00 0.50 N ATOM 602 CE2 TRP 37 -45.454 -14.511 24.436 1.00 0.50 C ATOM 603 CE3 TRP 37 -45.051 -16.277 26.047 1.00 0.50 C ATOM 604 CZ2 TRP 37 -45.311 -13.521 25.413 1.00 0.50 C ATOM 605 CZ3 TRP 37 -44.909 -15.293 27.018 1.00 0.50 C ATOM 606 CH2 TRP 37 -45.039 -13.932 26.696 1.00 0.50 H ATOM 617 N VAL 38 -46.906 -19.260 25.794 1.00 0.50 N ATOM 618 CA VAL 38 -47.303 -19.080 27.185 1.00 0.50 C ATOM 619 C VAL 38 -46.087 -18.982 28.098 1.00 0.50 C ATOM 620 O VAL 38 -45.087 -19.670 27.891 1.00 0.50 O ATOM 621 CB VAL 38 -48.212 -20.234 27.664 1.00 0.50 C ATOM 622 CG1 VAL 38 -48.588 -20.054 29.130 1.00 0.50 C ATOM 623 CG2 VAL 38 -49.468 -20.313 26.804 1.00 0.50 C ATOM 633 N TYR 39 -46.178 -18.121 29.106 1.00 0.50 N ATOM 634 CA TYR 39 -45.103 -17.964 30.078 1.00 0.50 C ATOM 635 C TYR 39 -45.592 -18.250 31.492 1.00 0.50 C ATOM 636 O TYR 39 -46.608 -17.709 31.929 1.00 0.50 O ATOM 637 CB TYR 39 -44.521 -16.545 30.008 1.00 0.50 C ATOM 638 CG TYR 39 -43.358 -16.319 30.949 1.00 0.50 C ATOM 639 CD1 TYR 39 -42.544 -17.377 31.347 1.00 0.50 C ATOM 640 CD2 TYR 39 -43.079 -15.046 31.441 1.00 0.50 C ATOM 641 CE1 TYR 39 -41.476 -17.173 32.214 1.00 0.50 C ATOM 642 CE2 TYR 39 -42.013 -14.831 32.309 1.00 0.50 C ATOM 643 CZ TYR 39 -41.218 -15.899 32.689 1.00 0.50 C ATOM 644 OH TYR 39 -40.162 -15.688 33.548 1.00 0.50 H ATOM 654 N GLN 40 -44.865 -19.104 32.203 1.00 0.50 N ATOM 655 CA GLN 40 -45.226 -19.467 33.568 1.00 0.50 C ATOM 656 C GLN 40 -46.323 -20.524 33.585 1.00 0.50 C ATOM 657 O GLN 40 -47.055 -20.656 34.566 1.00 0.50 O ATOM 658 CB GLN 40 -45.684 -18.230 34.348 1.00 0.50 C ATOM 659 CG GLN 40 -44.578 -17.204 34.565 1.00 0.50 C ATOM 660 CD GLN 40 -45.033 -16.021 35.401 1.00 0.50 C ATOM 661 OE1 GLN 40 -45.811 -15.179 34.939 1.00 0.50 O ATOM 662 NE2 GLN 40 -44.552 -15.942 36.638 1.00 0.50 N ATOM 671 N GLY 41 -46.434 -21.272 32.493 1.00 0.50 N ATOM 672 CA GLY 41 -47.429 -22.333 32.388 1.00 0.50 C ATOM 673 C GLY 41 -47.998 -22.416 30.977 1.00 0.50 C ATOM 674 O GLY 41 -48.882 -21.643 30.607 1.00 0.50 O ATOM 678 N LYS 42 -47.485 -23.358 30.193 1.00 0.50 N ATOM 679 CA LYS 42 -47.933 -23.537 28.817 1.00 0.50 C ATOM 680 C LYS 42 -48.582 -24.900 28.622 1.00 0.50 C ATOM 681 O LYS 42 -48.059 -25.918 29.075 1.00 0.50 O ATOM 682 CB LYS 42 -46.758 -23.378 27.848 1.00 0.50 C ATOM 683 CG LYS 42 -46.000 -22.069 28.010 1.00 0.50 C ATOM 684 CD LYS 42 -46.912 -20.868 27.797 1.00 0.50 C ATOM 685 CE LYS 42 -46.131 -19.640 27.349 1.00 0.50 C ATOM 686 NZ LYS 42 -45.100 -19.244 28.350 1.00 0.50 N ATOM 700 N PRO 43 -49.727 -24.914 27.947 1.00 0.50 N ATOM 701 CA PRO 43 -50.400 -26.161 27.606 1.00 0.50 C ATOM 702 C PRO 43 -49.908 -26.706 26.272 1.00 0.50 C ATOM 703 O PRO 43 -49.609 -25.946 25.351 1.00 0.50 O ATOM 704 CB PRO 43 -51.879 -25.772 27.556 1.00 0.50 C ATOM 705 CG PRO 43 -51.861 -24.351 27.074 1.00 0.50 C ATOM 706 CD PRO 43 -50.615 -23.757 27.692 1.00 0.50 C ATOM 714 N VAL 44 -49.825 -28.030 26.173 1.00 0.50 N ATOM 715 CA VAL 44 -49.406 -28.680 24.938 1.00 0.50 C ATOM 716 C VAL 44 -50.606 -29.048 24.075 1.00 0.50 C ATOM 717 O VAL 44 -51.190 -28.193 23.409 1.00 0.50 O ATOM 718 CB VAL 44 -48.575 -29.950 25.227 1.00 0.50 C ATOM 719 CG1 VAL 44 -48.172 -30.641 23.927 1.00 0.50 C ATOM 720 CG2 VAL 44 -47.335 -29.600 26.042 1.00 0.50 C ATOM 730 N MET 45 -50.971 -30.326 24.090 1.00 0.50 N ATOM 731 CA MET 45 -49.989 -31.402 24.158 1.00 0.50 C ATOM 732 C MET 45 -49.987 -32.228 22.878 1.00 0.50 C ATOM 733 O MET 45 -50.623 -31.860 21.890 1.00 0.50 O ATOM 734 CB MET 45 -50.270 -32.308 25.361 1.00 0.50 C ATOM 735 CG MET 45 -50.096 -31.608 26.702 1.00 0.50 C ATOM 736 SD MET 45 -50.381 -32.722 28.098 1.00 0.50 S ATOM 737 CE MET 45 -50.274 -31.575 29.464 1.00 0.50 C ATOM 747 N PRO 46 -49.267 -33.345 22.901 1.00 0.50 N ATOM 748 CA PRO 46 -48.684 -33.854 24.137 1.00 0.50 C ATOM 749 C PRO 46 -49.336 -35.166 24.554 1.00 0.50 C ATOM 750 O PRO 46 -50.496 -35.423 24.233 1.00 0.50 O ATOM 751 CB PRO 46 -48.948 -32.736 25.149 1.00 0.50 C ATOM 752 CG PRO 46 -49.380 -31.577 24.300 1.00 0.50 C ATOM 753 CD PRO 46 -49.993 -32.213 23.071 1.00 0.50 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 72.55 51.5 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 53.10 67.6 34 100.0 34 ARMSMC SURFACE . . . . . . . . 73.53 50.0 56 100.0 56 ARMSMC BURIED . . . . . . . . 67.79 58.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.35 43.8 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 82.17 37.9 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 85.17 41.2 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 79.46 40.7 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 72.05 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 59.98 52.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 55.94 52.4 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 58.70 61.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 50.78 54.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 105.21 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.34 50.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 62.10 57.1 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 80.45 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 61.34 50.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.67 66.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 72.67 66.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 89.39 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 72.67 66.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.69 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.69 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2482 CRMSCA SECONDARY STRUCTURE . . 5.19 17 100.0 17 CRMSCA SURFACE . . . . . . . . 9.07 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.54 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.75 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 5.56 85 100.0 85 CRMSMC SURFACE . . . . . . . . 9.11 143 100.0 143 CRMSMC BURIED . . . . . . . . 6.81 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.97 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 9.17 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 7.29 84 100.0 84 CRMSSC SURFACE . . . . . . . . 10.57 127 100.0 127 CRMSSC BURIED . . . . . . . . 6.80 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.42 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 6.56 152 100.0 152 CRMSALL SURFACE . . . . . . . . 9.91 243 100.0 243 CRMSALL BURIED . . . . . . . . 6.74 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.186 0.832 0.416 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 4.182 0.757 0.378 17 100.0 17 ERRCA SURFACE . . . . . . . . 7.598 0.853 0.427 29 100.0 29 ERRCA BURIED . . . . . . . . 5.197 0.727 0.363 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.254 0.838 0.419 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 4.464 0.773 0.387 85 100.0 85 ERRMC SURFACE . . . . . . . . 7.601 0.849 0.425 143 100.0 143 ERRMC BURIED . . . . . . . . 5.602 0.783 0.391 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.361 0.859 0.429 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 7.798 0.855 0.428 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 6.102 0.819 0.410 84 100.0 84 ERRSC SURFACE . . . . . . . . 9.050 0.881 0.441 127 100.0 127 ERRSC BURIED . . . . . . . . 5.341 0.760 0.380 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.832 0.848 0.424 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 5.337 0.797 0.398 152 100.0 152 ERRALL SURFACE . . . . . . . . 8.359 0.865 0.432 243 100.0 243 ERRALL BURIED . . . . . . . . 5.414 0.771 0.386 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 2 3 10 26 35 35 DISTCA CA (P) 2.86 5.71 8.57 28.57 74.29 35 DISTCA CA (RMS) 0.97 1.32 1.68 3.50 6.31 DISTCA ALL (N) 2 10 27 69 216 296 296 DISTALL ALL (P) 0.68 3.38 9.12 23.31 72.97 296 DISTALL ALL (RMS) 0.93 1.42 2.24 3.48 6.59 DISTALL END of the results output