####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS453_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS453_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 4.80 4.80 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 32 - 46 1.98 7.00 LCS_AVERAGE: 32.49 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 27 - 33 0.98 8.60 LONGEST_CONTINUOUS_SEGMENT: 7 34 - 40 0.49 7.75 LCS_AVERAGE: 14.78 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 5 9 35 4 5 5 7 8 9 10 15 21 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT F 13 F 13 5 9 35 4 5 5 7 8 9 10 12 18 24 29 31 32 34 34 35 35 35 35 35 LCS_GDT H 14 H 14 5 9 35 4 5 5 7 8 9 10 15 21 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT Y 15 Y 15 5 9 35 4 5 5 7 8 9 10 15 21 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT T 16 T 16 5 9 35 0 5 5 7 8 9 10 13 19 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT V 17 V 17 3 9 35 3 3 4 6 6 6 9 12 19 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT T 18 T 18 3 9 35 3 3 4 7 7 8 9 12 15 21 28 31 32 34 34 35 35 35 35 35 LCS_GDT D 19 D 19 3 9 35 3 3 4 4 5 8 9 10 13 17 17 23 27 32 34 35 35 35 35 35 LCS_GDT I 20 I 20 3 9 35 3 3 4 7 7 8 9 12 15 17 23 28 30 34 34 35 35 35 35 35 LCS_GDT K 21 K 21 3 4 35 3 3 3 4 4 5 6 9 20 24 25 30 32 34 34 35 35 35 35 35 LCS_GDT D 22 D 22 3 4 35 3 3 3 4 5 11 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT L 23 L 23 3 4 35 3 3 3 4 4 5 6 12 19 24 29 31 32 34 34 35 35 35 35 35 LCS_GDT T 24 T 24 3 10 35 3 5 8 9 11 14 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT K 25 K 25 3 10 35 3 3 3 8 11 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT L 26 L 26 5 10 35 3 5 6 8 9 15 20 21 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT G 27 G 27 7 10 35 4 6 6 8 9 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT A 28 A 28 7 10 35 4 6 6 8 10 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT I 29 I 29 7 10 35 4 6 6 9 11 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT Y 30 Y 30 7 10 35 4 6 8 9 11 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT D 31 D 31 7 10 35 3 5 8 9 11 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT K 32 K 32 7 15 35 2 6 6 8 9 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT T 33 T 33 7 15 35 3 6 6 8 9 15 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT K 34 K 34 7 15 35 7 9 12 13 13 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT K 35 K 35 7 15 35 3 9 12 13 13 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT Y 36 Y 36 7 15 35 7 9 12 13 13 16 20 23 24 25 29 31 32 34 34 35 35 35 35 35 LCS_GDT W 37 W 37 7 15 35 7 9 12 13 13 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT V 38 V 38 7 15 35 7 9 12 13 13 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT Y 39 Y 39 7 15 35 7 9 12 13 13 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT Q 40 Q 40 7 15 35 7 9 12 13 13 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT G 41 G 41 6 15 35 3 4 8 13 13 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT K 42 K 42 4 15 35 7 8 12 13 13 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT P 43 P 43 4 15 35 4 9 12 13 13 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT V 44 V 44 4 15 35 4 9 12 13 13 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT M 45 M 45 4 15 35 4 5 12 13 13 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 LCS_GDT P 46 P 46 4 15 35 4 5 12 13 13 14 19 23 24 24 28 31 32 34 34 35 35 35 35 35 LCS_AVERAGE LCS_A: 49.09 ( 14.78 32.49 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 9 12 13 13 16 20 23 24 26 29 31 32 34 34 35 35 35 35 35 GDT PERCENT_AT 20.00 25.71 34.29 37.14 37.14 45.71 57.14 65.71 68.57 74.29 82.86 88.57 91.43 97.14 97.14 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.34 0.70 1.02 1.20 1.20 2.33 2.67 2.85 2.98 3.85 4.08 4.25 4.35 4.61 4.61 4.80 4.80 4.80 4.80 4.80 GDT RMS_ALL_AT 8.12 7.17 7.42 7.30 7.30 6.25 5.97 6.05 5.95 4.95 4.89 4.87 4.86 4.81 4.81 4.80 4.80 4.80 4.80 4.80 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 9.963 0 0.075 1.362 11.355 0.119 2.714 LGA F 13 F 13 11.104 0 0.041 0.323 16.855 0.833 0.303 LGA H 14 H 14 9.979 0 0.073 0.191 11.848 0.119 0.048 LGA Y 15 Y 15 9.530 0 0.254 0.813 13.753 1.190 0.675 LGA T 16 T 16 10.632 0 0.608 0.958 14.246 0.000 0.000 LGA V 17 V 17 8.475 0 0.579 1.485 8.844 4.405 9.116 LGA T 18 T 18 11.423 0 0.063 1.019 15.352 0.000 0.000 LGA D 19 D 19 12.885 0 0.597 0.809 15.124 0.000 0.000 LGA I 20 I 20 9.349 0 0.622 0.646 11.398 1.071 1.310 LGA K 21 K 21 5.873 0 0.304 1.135 7.998 22.738 20.529 LGA D 22 D 22 3.729 0 0.617 0.627 4.892 35.833 52.619 LGA L 23 L 23 7.006 0 0.611 1.457 12.936 19.762 10.060 LGA T 24 T 24 3.381 0 0.637 0.604 4.450 52.262 54.422 LGA K 25 K 25 3.000 0 0.676 1.087 9.408 57.381 30.000 LGA L 26 L 26 5.443 0 0.679 1.413 12.392 34.524 18.274 LGA G 27 G 27 4.274 0 0.206 0.206 4.737 40.476 40.476 LGA A 28 A 28 3.682 0 0.135 0.196 4.122 52.143 49.143 LGA I 29 I 29 2.764 0 0.093 0.105 3.297 53.571 53.571 LGA Y 30 Y 30 3.090 0 0.066 1.230 14.342 53.571 23.690 LGA D 31 D 31 2.762 0 0.332 0.798 6.849 53.690 39.286 LGA K 32 K 32 3.110 0 0.571 1.130 8.801 52.024 37.354 LGA T 33 T 33 3.749 0 0.660 0.971 6.298 43.452 34.218 LGA K 34 K 34 2.798 0 0.232 0.843 5.768 59.048 45.185 LGA K 35 K 35 2.419 0 0.131 1.169 3.103 57.262 57.302 LGA Y 36 Y 36 2.744 0 0.078 1.356 8.544 59.048 40.040 LGA W 37 W 37 2.675 0 0.098 0.184 6.105 62.976 39.830 LGA V 38 V 38 2.235 0 0.075 0.180 2.952 60.952 62.585 LGA Y 39 Y 39 2.654 0 0.197 0.348 3.611 55.595 63.770 LGA Q 40 Q 40 2.621 0 0.496 0.539 6.125 62.976 45.397 LGA G 41 G 41 1.078 0 0.595 0.595 2.610 77.619 77.619 LGA K 42 K 42 1.734 0 0.173 0.864 10.559 86.190 46.772 LGA P 43 P 43 0.581 0 0.338 0.585 1.910 92.857 88.027 LGA V 44 V 44 1.208 0 0.142 1.195 3.565 79.405 71.361 LGA M 45 M 45 2.524 0 0.108 0.937 6.237 57.262 46.012 LGA P 46 P 46 3.450 0 0.112 0.353 4.019 45.119 47.279 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 4.801 4.712 6.060 41.014 34.542 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 23 2.85 57.143 52.107 0.781 LGA_LOCAL RMSD: 2.845 Number of atoms: 23 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.050 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 4.801 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.380861 * X + -0.118281 * Y + 0.917036 * Z + 45.885345 Y_new = -0.868828 * X + 0.293553 * Y + 0.398703 * Z + -60.735275 Z_new = -0.316358 * X + -0.948597 * Y + 0.009038 * Z + 30.638199 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.157663 0.321888 -1.561269 [DEG: -66.3292 18.4428 -89.4541 ] ZXZ: 1.980916 1.561759 -2.819691 [DEG: 113.4981 89.4822 -161.5564 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS453_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS453_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 23 2.85 52.107 4.80 REMARK ---------------------------------------------------------- MOLECULE T0548TS453_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3l2t_A ATOM 87 N HIS 12 -42.497 -22.179 40.953 1.00250.54 N ATOM 88 CA HIS 12 -41.833 -21.386 39.971 1.00250.54 C ATOM 89 ND1 HIS 12 -41.379 -19.732 37.032 1.00250.54 N ATOM 90 CG HIS 12 -41.801 -20.962 37.485 1.00250.54 C ATOM 91 CB HIS 12 -42.661 -21.203 38.688 1.00250.54 C ATOM 92 NE2 HIS 12 -40.516 -21.250 35.654 1.00250.54 N ATOM 93 CD2 HIS 12 -41.264 -21.876 36.632 1.00250.54 C ATOM 94 CE1 HIS 12 -40.615 -19.962 35.935 1.00250.54 C ATOM 95 C HIS 12 -41.615 -20.056 40.610 1.00250.54 C ATOM 96 O HIS 12 -42.458 -19.581 41.368 1.00250.54 O ATOM 97 N PHE 13 -40.457 -19.424 40.349 1.00225.80 N ATOM 98 CA PHE 13 -40.245 -18.162 40.984 1.00225.80 C ATOM 99 CB PHE 13 -38.781 -17.680 40.966 1.00225.80 C ATOM 100 CG PHE 13 -37.992 -18.637 41.794 1.00225.80 C ATOM 101 CD1 PHE 13 -37.446 -19.763 41.219 1.00225.80 C ATOM 102 CD2 PHE 13 -37.801 -18.414 43.139 1.00225.80 C ATOM 103 CE1 PHE 13 -36.717 -20.652 41.972 1.00225.80 C ATOM 104 CE2 PHE 13 -37.072 -19.302 43.896 1.00225.80 C ATOM 105 CZ PHE 13 -36.529 -20.421 43.313 1.00225.80 C ATOM 106 C PHE 13 -41.110 -17.159 40.293 1.00225.80 C ATOM 107 O PHE 13 -41.247 -17.169 39.072 1.00225.80 O ATOM 108 N HIS 14 -41.734 -16.279 41.098 1.00240.07 N ATOM 109 CA HIS 14 -42.647 -15.263 40.661 1.00240.07 C ATOM 110 ND1 HIS 14 -44.880 -12.922 41.728 1.00240.07 N ATOM 111 CG HIS 14 -44.953 -14.223 41.282 1.00240.07 C ATOM 112 CB HIS 14 -43.899 -15.255 41.559 1.00240.07 C ATOM 113 NE2 HIS 14 -46.845 -13.135 40.709 1.00240.07 N ATOM 114 CD2 HIS 14 -46.157 -14.335 40.658 1.00240.07 C ATOM 115 CE1 HIS 14 -46.038 -12.317 41.360 1.00240.07 C ATOM 116 C HIS 14 -41.954 -13.951 40.827 1.00240.07 C ATOM 117 O HIS 14 -41.415 -13.665 41.896 1.00240.07 O ATOM 118 N TYR 15 -41.929 -13.113 39.770 1.00229.60 N ATOM 119 CA TYR 15 -41.262 -11.853 39.936 1.00229.60 C ATOM 120 CB TYR 15 -40.286 -11.505 38.798 1.00229.60 C ATOM 121 CG TYR 15 -39.105 -12.408 38.911 1.00229.60 C ATOM 122 CD1 TYR 15 -38.042 -12.064 39.715 1.00229.60 C ATOM 123 CD2 TYR 15 -39.057 -13.597 38.220 1.00229.60 C ATOM 124 CE1 TYR 15 -36.949 -12.890 39.829 1.00229.60 C ATOM 125 CE2 TYR 15 -37.965 -14.427 38.328 1.00229.60 C ATOM 126 CZ TYR 15 -36.908 -14.074 39.134 1.00229.60 C ATOM 127 OH TYR 15 -35.786 -14.922 39.251 1.00229.60 O ATOM 128 C TYR 15 -42.288 -10.768 39.969 1.00229.60 C ATOM 129 O TYR 15 -42.626 -10.180 38.943 1.00229.60 O ATOM 130 N THR 16 -42.819 -10.492 41.175 1.00138.35 N ATOM 131 CA THR 16 -43.760 -9.432 41.384 1.00138.35 C ATOM 132 CB THR 16 -44.468 -9.512 42.707 1.00138.35 C ATOM 133 OG1 THR 16 -45.421 -8.465 42.811 1.00138.35 O ATOM 134 CG2 THR 16 -43.434 -9.399 43.841 1.00138.35 C ATOM 135 C THR 16 -43.046 -8.117 41.343 1.00138.35 C ATOM 136 O THR 16 -43.596 -7.121 40.873 1.00138.35 O ATOM 137 N VAL 17 -41.784 -8.090 41.825 1.00111.10 N ATOM 138 CA VAL 17 -41.076 -6.850 41.989 1.00111.10 C ATOM 139 CB VAL 17 -39.672 -6.991 42.509 1.00111.10 C ATOM 140 CG1 VAL 17 -39.736 -7.648 43.898 1.00111.10 C ATOM 141 CG2 VAL 17 -38.818 -7.755 41.481 1.00111.10 C ATOM 142 C VAL 17 -41.074 -6.072 40.715 1.00111.10 C ATOM 143 O VAL 17 -40.950 -6.614 39.617 1.00111.10 O ATOM 144 N THR 18 -41.205 -4.742 40.883 1.00141.81 N ATOM 145 CA THR 18 -41.387 -3.770 39.848 1.00141.81 C ATOM 146 CB THR 18 -41.524 -2.380 40.394 1.00141.81 C ATOM 147 OG1 THR 18 -40.352 -2.019 41.112 1.00141.81 O ATOM 148 CG2 THR 18 -42.748 -2.341 41.326 1.00141.81 C ATOM 149 C THR 18 -40.228 -3.781 38.912 1.00141.81 C ATOM 150 O THR 18 -40.424 -3.595 37.711 1.00141.81 O ATOM 151 N ASP 19 -39.004 -3.984 39.445 1.00219.68 N ATOM 152 CA ASP 19 -37.798 -4.020 38.663 1.00219.68 C ATOM 153 CB ASP 19 -36.615 -4.587 39.475 1.00219.68 C ATOM 154 CG ASP 19 -35.320 -4.528 38.673 1.00219.68 C ATOM 155 OD1 ASP 19 -35.378 -4.397 37.423 1.00219.68 O ATOM 156 OD2 ASP 19 -34.241 -4.616 39.319 1.00219.68 O ATOM 157 C ASP 19 -38.064 -4.924 37.502 1.00219.68 C ATOM 158 O ASP 19 -38.465 -6.072 37.679 1.00219.68 O ATOM 159 N ILE 20 -37.889 -4.409 36.265 1.00259.89 N ATOM 160 CA ILE 20 -38.202 -5.244 35.143 1.00259.89 C ATOM 161 CB ILE 20 -39.328 -4.702 34.300 1.00259.89 C ATOM 162 CG2 ILE 20 -39.522 -5.668 33.121 1.00259.89 C ATOM 163 CG1 ILE 20 -40.619 -4.544 35.122 1.00259.89 C ATOM 164 CD1 ILE 20 -41.688 -3.711 34.408 1.00259.89 C ATOM 165 C ILE 20 -36.991 -5.318 34.259 1.00259.89 C ATOM 166 O ILE 20 -36.317 -4.318 34.019 1.00259.89 O ATOM 167 N LYS 21 -36.674 -6.530 33.753 1.00219.55 N ATOM 168 CA LYS 21 -35.568 -6.688 32.846 1.00219.55 C ATOM 169 CB LYS 21 -34.496 -7.703 33.287 1.00219.55 C ATOM 170 CG LYS 21 -33.233 -7.044 33.861 1.00219.55 C ATOM 171 CD LYS 21 -33.428 -6.190 35.119 1.00219.55 C ATOM 172 CE LYS 21 -32.166 -5.406 35.510 1.00219.55 C ATOM 173 NZ LYS 21 -32.410 -4.581 36.716 1.00219.55 N ATOM 174 C LYS 21 -36.067 -7.069 31.488 1.00219.55 C ATOM 175 O LYS 21 -36.603 -6.218 30.780 1.00219.55 O ATOM 176 N ASP 22 -35.884 -8.357 31.109 1.00198.76 N ATOM 177 CA ASP 22 -36.186 -8.888 29.800 1.00198.76 C ATOM 178 CB ASP 22 -36.336 -10.425 29.763 1.00198.76 C ATOM 179 CG ASP 22 -34.989 -11.071 30.064 1.00198.76 C ATOM 180 OD1 ASP 22 -34.128 -10.369 30.657 1.00198.76 O ATOM 181 OD2 ASP 22 -34.794 -12.263 29.701 1.00198.76 O ATOM 182 C ASP 22 -37.481 -8.332 29.316 1.00198.76 C ATOM 183 O ASP 22 -38.535 -8.549 29.911 1.00198.76 O ATOM 184 N LEU 23 -37.417 -7.571 28.209 1.00276.68 N ATOM 185 CA LEU 23 -38.611 -6.996 27.672 1.00276.68 C ATOM 186 CB LEU 23 -38.352 -5.962 26.559 1.00276.68 C ATOM 187 CG LEU 23 -37.817 -6.569 25.248 1.00276.68 C ATOM 188 CD1 LEU 23 -37.536 -5.481 24.198 1.00276.68 C ATOM 189 CD2 LEU 23 -36.622 -7.500 25.498 1.00276.68 C ATOM 190 C LEU 23 -39.401 -8.131 27.113 1.00276.68 C ATOM 191 O LEU 23 -38.840 -9.085 26.576 1.00276.68 O ATOM 192 N THR 24 -40.740 -8.063 27.246 1.00305.98 N ATOM 193 CA THR 24 -41.564 -9.144 26.797 1.00305.98 C ATOM 194 CB THR 24 -42.711 -9.425 27.726 1.00305.98 C ATOM 195 OG1 THR 24 -43.549 -8.286 27.837 1.00305.98 O ATOM 196 CG2 THR 24 -42.140 -9.785 29.118 1.00305.98 C ATOM 197 C THR 24 -42.145 -8.734 25.478 1.00305.98 C ATOM 198 O THR 24 -42.456 -7.564 25.265 1.00305.98 O ATOM 199 N LYS 25 -42.289 -9.688 24.539 1.00277.11 N ATOM 200 CA LYS 25 -42.886 -9.290 23.303 1.00277.11 C ATOM 201 CB LYS 25 -43.080 -10.417 22.280 1.00277.11 C ATOM 202 CG LYS 25 -41.815 -11.155 21.874 1.00277.11 C ATOM 203 CD LYS 25 -42.151 -12.472 21.181 1.00277.11 C ATOM 204 CE LYS 25 -41.006 -13.470 21.254 1.00277.11 C ATOM 205 NZ LYS 25 -40.409 -13.401 22.605 1.00277.11 N ATOM 206 C LYS 25 -44.276 -8.926 23.667 1.00277.11 C ATOM 207 O LYS 25 -44.942 -9.671 24.384 1.00277.11 O ATOM 208 N LEU 26 -44.761 -7.758 23.218 1.00114.02 N ATOM 209 CA LEU 26 -46.128 -7.494 23.533 1.00114.02 C ATOM 210 CB LEU 26 -46.505 -6.015 23.642 1.00114.02 C ATOM 211 CG LEU 26 -45.776 -5.315 24.794 1.00114.02 C ATOM 212 CD1 LEU 26 -44.276 -5.177 24.495 1.00114.02 C ATOM 213 CD2 LEU 26 -46.458 -3.992 25.166 1.00114.02 C ATOM 214 C LEU 26 -46.957 -8.093 22.462 1.00114.02 C ATOM 215 O LEU 26 -46.516 -8.266 21.327 1.00114.02 O ATOM 216 N GLY 27 -48.193 -8.463 22.817 1.00 17.03 N ATOM 217 CA GLY 27 -49.060 -9.011 21.831 1.00 17.03 C ATOM 218 C GLY 27 -48.822 -10.479 21.809 1.00 17.03 C ATOM 219 O GLY 27 -49.671 -11.237 21.341 1.00 17.03 O ATOM 220 N ALA 28 -47.674 -10.954 22.330 1.00 46.67 N ATOM 221 CA ALA 28 -47.589 -12.365 22.257 1.00 46.67 C ATOM 222 CB ALA 28 -46.144 -12.866 22.155 1.00 46.67 C ATOM 223 C ALA 28 -48.159 -12.836 23.561 1.00 46.67 C ATOM 224 O ALA 28 -47.674 -12.430 24.615 1.00 46.67 O ATOM 225 N ILE 29 -49.199 -13.709 23.522 1.00125.04 N ATOM 226 CA ILE 29 -49.800 -14.143 24.758 1.00125.04 C ATOM 227 CB ILE 29 -51.293 -14.476 24.652 1.00125.04 C ATOM 228 CG2 ILE 29 -52.051 -13.177 24.331 1.00125.04 C ATOM 229 CG1 ILE 29 -51.556 -15.614 23.658 1.00125.04 C ATOM 230 CD1 ILE 29 -53.006 -16.093 23.695 1.00125.04 C ATOM 231 C ILE 29 -49.033 -15.333 25.279 1.00125.04 C ATOM 232 O ILE 29 -48.825 -16.306 24.560 1.00125.04 O ATOM 233 N TYR 30 -48.560 -15.249 26.539 1.00 80.05 N ATOM 234 CA TYR 30 -47.794 -16.291 27.186 1.00 80.05 C ATOM 235 CB TYR 30 -46.607 -15.685 27.963 1.00 80.05 C ATOM 236 CG TYR 30 -45.665 -14.903 27.090 1.00 80.05 C ATOM 237 CD1 TYR 30 -44.629 -15.523 26.427 1.00 80.05 C ATOM 238 CD2 TYR 30 -45.791 -13.533 26.962 1.00 80.05 C ATOM 239 CE1 TYR 30 -43.760 -14.800 25.637 1.00 80.05 C ATOM 240 CE2 TYR 30 -44.930 -12.799 26.173 1.00 80.05 C ATOM 241 CZ TYR 30 -43.909 -13.436 25.514 1.00 80.05 C ATOM 242 OH TYR 30 -43.031 -12.684 24.706 1.00 80.05 O ATOM 243 C TYR 30 -48.715 -16.906 28.214 1.00 80.05 C ATOM 244 O TYR 30 -49.027 -16.297 29.233 1.00 80.05 O ATOM 245 N ASP 31 -49.190 -18.142 27.976 1.00 91.24 N ATOM 246 CA ASP 31 -50.129 -18.758 28.865 1.00 91.24 C ATOM 247 CB ASP 31 -51.493 -19.025 28.195 1.00 91.24 C ATOM 248 CG ASP 31 -52.394 -17.833 28.479 1.00 91.24 C ATOM 249 OD1 ASP 31 -52.492 -17.449 29.673 1.00 91.24 O ATOM 250 OD2 ASP 31 -53.019 -17.310 27.516 1.00 91.24 O ATOM 251 C ASP 31 -49.561 -20.018 29.450 1.00 91.24 C ATOM 252 O ASP 31 -48.381 -20.323 29.271 1.00 91.24 O ATOM 253 N LYS 32 -50.404 -20.762 30.211 1.00126.34 N ATOM 254 CA LYS 32 -49.974 -21.963 30.892 1.00126.34 C ATOM 255 CB LYS 32 -50.017 -21.764 32.412 1.00126.34 C ATOM 256 CG LYS 32 -49.181 -20.560 32.834 1.00126.34 C ATOM 257 CD LYS 32 -49.195 -20.323 34.338 1.00126.34 C ATOM 258 CE LYS 32 -48.496 -21.460 35.070 1.00126.34 C ATOM 259 NZ LYS 32 -47.383 -21.959 34.229 1.00126.34 N ATOM 260 C LYS 32 -50.873 -23.125 30.532 1.00126.34 C ATOM 261 O LYS 32 -52.095 -22.977 30.475 1.00126.34 O ATOM 262 N THR 33 -50.262 -24.305 30.239 1.00168.44 N ATOM 263 CA THR 33 -50.977 -25.528 29.930 1.00168.44 C ATOM 264 CB THR 33 -51.306 -25.644 28.459 1.00168.44 C ATOM 265 OG1 THR 33 -50.113 -25.758 27.695 1.00168.44 O ATOM 266 CG2 THR 33 -52.073 -24.379 28.034 1.00168.44 C ATOM 267 C THR 33 -50.101 -26.709 30.304 1.00168.44 C ATOM 268 O THR 33 -48.920 -26.724 29.963 1.00168.44 O ATOM 269 N LYS 34 -50.655 -27.726 31.014 1.00284.18 N ATOM 270 CA LYS 34 -49.955 -28.947 31.373 1.00284.18 C ATOM 271 CB LYS 34 -49.538 -29.741 30.115 1.00284.18 C ATOM 272 CG LYS 34 -48.900 -31.109 30.383 1.00284.18 C ATOM 273 CD LYS 34 -48.503 -31.868 29.113 1.00284.18 C ATOM 274 CE LYS 34 -49.635 -32.062 28.106 1.00284.18 C ATOM 275 NZ LYS 34 -49.259 -31.459 26.807 1.00284.18 N ATOM 276 C LYS 34 -48.707 -28.637 32.177 1.00284.18 C ATOM 277 O LYS 34 -47.701 -29.339 32.090 1.00284.18 O ATOM 278 N LYS 35 -48.743 -27.575 32.999 1.00200.59 N ATOM 279 CA LYS 35 -47.629 -27.187 33.826 1.00200.59 C ATOM 280 CB LYS 35 -47.247 -28.262 34.862 1.00200.59 C ATOM 281 CG LYS 35 -46.241 -27.787 35.915 1.00200.59 C ATOM 282 CD LYS 35 -46.717 -26.608 36.770 1.00200.59 C ATOM 283 CE LYS 35 -47.335 -27.027 38.108 1.00200.59 C ATOM 284 NZ LYS 35 -48.724 -27.493 37.908 1.00200.59 N ATOM 285 C LYS 35 -46.405 -26.787 33.024 1.00200.59 C ATOM 286 O LYS 35 -45.305 -26.740 33.570 1.00200.59 O ATOM 287 N TYR 36 -46.576 -26.456 31.722 1.00104.74 N ATOM 288 CA TYR 36 -45.494 -25.963 30.887 1.00104.74 C ATOM 289 CB TYR 36 -45.200 -26.828 29.632 1.00104.74 C ATOM 290 CG TYR 36 -44.453 -28.067 30.014 1.00104.74 C ATOM 291 CD1 TYR 36 -45.094 -29.182 30.501 1.00104.74 C ATOM 292 CD2 TYR 36 -43.083 -28.107 29.863 1.00104.74 C ATOM 293 CE1 TYR 36 -44.387 -30.316 30.834 1.00104.74 C ATOM 294 CE2 TYR 36 -42.371 -29.234 30.194 1.00104.74 C ATOM 295 CZ TYR 36 -43.021 -30.343 30.680 1.00104.74 C ATOM 296 OH TYR 36 -42.291 -31.501 31.018 1.00104.74 O ATOM 297 C TYR 36 -45.886 -24.573 30.415 1.00104.74 C ATOM 298 O TYR 36 -47.050 -24.285 30.156 1.00104.74 O ATOM 299 N TRP 37 -44.921 -23.636 30.351 1.00 70.85 N ATOM 300 CA TRP 37 -45.173 -22.283 29.921 1.00 70.85 C ATOM 301 CB TRP 37 -44.063 -21.354 30.401 1.00 70.85 C ATOM 302 CG TRP 37 -43.940 -21.315 31.890 1.00 70.85 C ATOM 303 CD2 TRP 37 -44.364 -20.198 32.675 1.00 70.85 C ATOM 304 CD1 TRP 37 -43.428 -22.235 32.755 1.00 70.85 C ATOM 305 NE1 TRP 37 -43.517 -21.762 34.040 1.00 70.85 N ATOM 306 CE2 TRP 37 -44.088 -20.506 34.004 1.00 70.85 C ATOM 307 CE3 TRP 37 -44.930 -19.010 32.310 1.00 70.85 C ATOM 308 CZ2 TRP 37 -44.377 -19.624 35.002 1.00 70.85 C ATOM 309 CZ3 TRP 37 -45.225 -18.124 33.319 1.00 70.85 C ATOM 310 CH2 TRP 37 -44.954 -18.428 34.638 1.00 70.85 C ATOM 311 C TRP 37 -45.183 -22.234 28.412 1.00 70.85 C ATOM 312 O TRP 37 -44.243 -22.679 27.753 1.00 70.85 O ATOM 313 N VAL 38 -46.230 -21.624 27.816 1.00 67.33 N ATOM 314 CA VAL 38 -46.377 -21.687 26.372 1.00 67.33 C ATOM 315 CB VAL 38 -47.643 -22.401 26.014 1.00 67.33 C ATOM 316 CG1 VAL 38 -47.911 -22.414 24.498 1.00 67.33 C ATOM 317 CG2 VAL 38 -47.540 -23.815 26.605 1.00 67.33 C ATOM 318 C VAL 38 -46.506 -20.296 25.770 1.00 67.33 C ATOM 319 O VAL 38 -46.858 -19.338 26.467 1.00 67.33 O ATOM 320 N TYR 39 -46.194 -20.196 24.440 1.00245.70 N ATOM 321 CA TYR 39 -46.236 -19.022 23.584 1.00245.70 C ATOM 322 CB TYR 39 -44.860 -18.267 23.705 1.00245.70 C ATOM 323 CG TYR 39 -44.488 -17.328 22.605 1.00245.70 C ATOM 324 CD1 TYR 39 -44.903 -16.019 22.555 1.00245.70 C ATOM 325 CD2 TYR 39 -43.704 -17.810 21.581 1.00245.70 C ATOM 326 CE1 TYR 39 -44.524 -15.224 21.498 1.00245.70 C ATOM 327 CE2 TYR 39 -43.325 -17.018 20.524 1.00245.70 C ATOM 328 CZ TYR 39 -43.739 -15.710 20.483 1.00245.70 C ATOM 329 OH TYR 39 -43.366 -14.875 19.409 1.00245.70 O ATOM 330 C TYR 39 -46.560 -19.431 22.101 1.00245.70 C ATOM 331 O TYR 39 -46.902 -20.547 21.751 1.00245.70 O ATOM 332 N GLN 40 -46.458 -18.527 21.087 1.00224.22 N ATOM 333 CA GLN 40 -46.786 -18.704 19.669 1.00224.22 C ATOM 334 CB GLN 40 -46.203 -17.530 18.833 1.00224.22 C ATOM 335 CG GLN 40 -46.762 -16.169 19.275 1.00224.22 C ATOM 336 CD GLN 40 -46.032 -15.064 18.520 1.00224.22 C ATOM 337 OE1 GLN 40 -45.319 -15.333 17.555 1.00224.22 O ATOM 338 NE2 GLN 40 -46.212 -13.790 18.963 1.00224.22 N ATOM 339 C GLN 40 -46.312 -20.051 19.136 1.00224.22 C ATOM 340 O GLN 40 -45.319 -20.590 19.618 1.00224.22 O ATOM 341 N GLY 41 -47.027 -20.628 18.124 1.00122.17 N ATOM 342 CA GLY 41 -46.851 -21.988 17.688 1.00122.17 C ATOM 343 C GLY 41 -47.150 -22.743 18.980 1.00122.17 C ATOM 344 O GLY 41 -48.342 -22.852 19.266 1.00122.17 O ATOM 345 N LYS 42 -46.078 -23.156 19.761 1.00240.90 N ATOM 346 CA LYS 42 -45.883 -23.886 21.062 1.00240.90 C ATOM 347 CB LYS 42 -45.877 -25.421 20.867 1.00240.90 C ATOM 348 CG LYS 42 -47.258 -26.055 21.026 1.00240.90 C ATOM 349 CD LYS 42 -47.743 -26.013 22.477 1.00240.90 C ATOM 350 CE LYS 42 -49.234 -26.294 22.659 1.00240.90 C ATOM 351 NZ LYS 42 -50.008 -25.042 22.506 1.00240.90 N ATOM 352 C LYS 42 -44.580 -23.465 22.010 1.00240.90 C ATOM 353 O LYS 42 -44.006 -22.442 21.641 1.00240.90 O ATOM 354 N PRO 43 -44.046 -24.234 23.143 1.00206.92 N ATOM 355 CA PRO 43 -43.147 -24.021 24.378 1.00206.92 C ATOM 356 CD PRO 43 -45.115 -25.043 23.713 1.00206.92 C ATOM 357 CB PRO 43 -43.082 -25.407 25.022 1.00206.92 C ATOM 358 CG PRO 43 -44.547 -25.846 24.902 1.00206.92 C ATOM 359 C PRO 43 -41.845 -23.329 24.841 1.00206.92 C ATOM 360 O PRO 43 -40.791 -23.470 24.238 1.00206.92 O ATOM 361 N VAL 44 -41.861 -22.678 26.057 1.00134.55 N ATOM 362 CA VAL 44 -40.696 -21.975 26.586 1.00134.55 C ATOM 363 CB VAL 44 -40.978 -20.538 26.908 1.00134.55 C ATOM 364 CG1 VAL 44 -42.207 -20.474 27.826 1.00134.55 C ATOM 365 CG2 VAL 44 -39.707 -19.903 27.497 1.00134.55 C ATOM 366 C VAL 44 -40.183 -22.666 27.809 1.00134.55 C ATOM 367 O VAL 44 -40.672 -22.534 28.929 1.00134.55 O ATOM 368 N MET 45 -39.086 -23.392 27.627 1.00124.69 N ATOM 369 CA MET 45 -38.521 -24.134 28.736 1.00124.69 C ATOM 370 CB MET 45 -37.521 -25.107 28.155 1.00124.69 C ATOM 371 CG MET 45 -37.226 -26.298 29.060 1.00124.69 C ATOM 372 SD MET 45 -38.642 -27.423 29.233 1.00124.69 S ATOM 373 CE MET 45 -37.669 -28.800 29.902 1.00124.69 C ATOM 374 C MET 45 -37.817 -23.233 29.730 1.00124.69 C ATOM 375 O MET 45 -37.265 -22.192 29.376 1.00124.69 O ATOM 376 N PRO 46 -37.797 -23.632 30.994 1.00 87.00 N ATOM 377 CA PRO 46 -37.079 -22.939 32.050 1.00 87.00 C ATOM 378 CD PRO 46 -38.568 -24.763 31.498 1.00 87.00 C ATOM 379 CB PRO 46 -37.236 -23.815 33.297 1.00 87.00 C ATOM 380 CG PRO 46 -37.847 -25.136 32.785 1.00 87.00 C ATOM 381 C PRO 46 -35.635 -22.807 31.656 1.00 87.00 C ATOM 382 O PRO 46 -35.054 -23.763 31.146 1.00 87.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 78.55 57.4 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 86.66 58.8 34 100.0 34 ARMSMC SURFACE . . . . . . . . 82.80 53.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 54.47 75.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.02 37.5 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 74.46 37.9 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 86.20 35.3 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 76.29 33.3 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 86.80 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 56.12 56.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 56.32 52.4 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 38.24 76.9 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 56.79 54.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 50.86 66.7 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.90 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 101.96 28.6 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 98.41 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 95.90 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 115.34 0.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 115.34 0.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 131.64 0.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 115.34 0.0 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.80 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.80 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.1372 CRMSCA SECONDARY STRUCTURE . . 5.04 17 100.0 17 CRMSCA SURFACE . . . . . . . . 4.94 29 100.0 29 CRMSCA BURIED . . . . . . . . 4.07 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.90 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 5.10 85 100.0 85 CRMSMC SURFACE . . . . . . . . 5.06 143 100.0 143 CRMSMC BURIED . . . . . . . . 4.05 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.08 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 7.13 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 7.18 84 100.0 84 CRMSSC SURFACE . . . . . . . . 7.10 127 100.0 127 CRMSSC BURIED . . . . . . . . 6.99 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.08 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 6.26 152 100.0 152 CRMSALL SURFACE . . . . . . . . 6.14 243 100.0 243 CRMSALL BURIED . . . . . . . . 5.77 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 166.213 0.931 0.935 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 166.481 0.939 0.941 17 100.0 17 ERRCA SURFACE . . . . . . . . 172.948 0.933 0.937 29 100.0 29 ERRCA BURIED . . . . . . . . 133.660 0.924 0.928 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 167.316 0.933 0.936 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 166.435 0.938 0.941 85 100.0 85 ERRMC SURFACE . . . . . . . . 174.357 0.934 0.937 143 100.0 143 ERRMC BURIED . . . . . . . . 133.752 0.928 0.931 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 173.849 0.916 0.920 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 172.276 0.914 0.919 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 155.946 0.903 0.909 84 100.0 84 ERRSC SURFACE . . . . . . . . 181.153 0.921 0.925 127 100.0 127 ERRSC BURIED . . . . . . . . 141.863 0.894 0.901 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 170.280 0.924 0.928 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 160.712 0.920 0.924 152 100.0 152 ERRALL SURFACE . . . . . . . . 177.262 0.927 0.931 243 100.0 243 ERRALL BURIED . . . . . . . . 138.272 0.911 0.916 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 5 25 35 35 35 DISTCA CA (P) 0.00 2.86 14.29 71.43 100.00 35 DISTCA CA (RMS) 0.00 1.67 2.56 3.96 4.80 DISTCA ALL (N) 0 3 34 141 276 296 296 DISTALL ALL (P) 0.00 1.01 11.49 47.64 93.24 296 DISTALL ALL (RMS) 0.00 1.49 2.57 3.77 5.53 DISTALL END of the results output