####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS452_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS452_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 4.90 4.90 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 14 - 33 1.93 6.27 LCS_AVERAGE: 48.41 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 15 - 30 0.98 7.44 LCS_AVERAGE: 34.20 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 4 5 35 3 4 4 5 6 7 7 11 11 13 19 21 21 22 22 22 23 24 26 27 LCS_GDT F 13 F 13 4 19 35 3 4 4 6 7 15 19 20 21 21 21 21 31 32 32 32 33 34 34 34 LCS_GDT H 14 H 14 4 20 35 3 4 4 5 6 7 11 18 21 21 21 21 31 32 32 32 33 34 34 34 LCS_GDT Y 15 Y 15 16 20 35 3 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT T 16 T 16 16 20 35 4 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT V 17 V 17 16 20 35 10 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT T 18 T 18 16 20 35 10 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT D 19 D 19 16 20 35 10 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT I 20 I 20 16 20 35 10 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT K 21 K 21 16 20 35 10 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT D 22 D 22 16 20 35 10 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT L 23 L 23 16 20 35 10 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT T 24 T 24 16 20 35 10 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT K 25 K 25 16 20 35 10 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT L 26 L 26 16 20 35 10 12 16 18 18 19 19 20 28 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT G 27 G 27 16 20 35 4 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT A 28 A 28 16 20 35 5 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT I 29 I 29 16 20 35 4 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT Y 30 Y 30 16 20 35 4 12 16 18 18 19 19 25 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT D 31 D 31 7 20 35 3 6 13 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT K 32 K 32 7 20 35 3 7 13 18 18 19 20 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT T 33 T 33 7 20 35 3 5 9 16 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT K 34 K 34 4 13 35 3 5 8 11 13 16 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT K 35 K 35 11 13 35 5 9 12 12 12 13 15 25 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT Y 36 Y 36 11 13 35 5 9 12 12 12 14 17 25 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT W 37 W 37 11 13 35 7 9 12 12 12 16 18 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT V 38 V 38 11 13 35 7 9 12 12 13 16 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT Y 39 Y 39 11 13 35 7 9 12 12 13 16 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT Q 40 Q 40 11 13 35 7 9 12 12 13 16 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT G 41 G 41 11 13 35 7 9 12 12 13 16 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT K 42 K 42 11 13 35 7 9 12 12 13 16 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT P 43 P 43 11 13 35 7 9 12 12 13 16 21 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT V 44 V 44 11 13 35 3 9 12 12 13 16 18 26 29 30 30 31 32 32 32 32 33 34 34 34 LCS_GDT M 45 M 45 11 13 35 3 5 12 12 12 13 14 21 25 29 30 31 32 32 32 32 33 34 34 34 LCS_GDT P 46 P 46 5 13 35 3 5 12 12 12 13 13 20 22 26 29 31 32 32 32 32 33 34 34 34 LCS_AVERAGE LCS_A: 60.87 ( 34.20 48.41 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 12 16 18 18 19 21 26 29 30 30 31 32 32 32 32 33 34 34 34 GDT PERCENT_AT 28.57 34.29 45.71 51.43 51.43 54.29 60.00 74.29 82.86 85.71 85.71 88.57 91.43 91.43 91.43 91.43 94.29 97.14 97.14 97.14 GDT RMS_LOCAL 0.22 0.36 0.98 1.29 1.29 1.49 2.72 3.03 3.22 3.31 3.31 3.45 3.64 3.64 3.64 3.64 3.94 4.19 4.19 4.19 GDT RMS_ALL_AT 10.22 10.11 7.44 6.46 6.46 6.06 4.99 4.97 4.97 4.95 4.95 5.00 5.08 5.08 5.08 5.08 4.99 4.94 4.94 4.94 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 36 Y 36 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 16.102 0 0.428 1.471 22.154 0.000 0.000 LGA F 13 F 13 9.168 0 0.217 1.471 11.499 1.429 9.957 LGA H 14 H 14 8.663 0 0.179 1.123 15.078 9.643 3.857 LGA Y 15 Y 15 2.214 0 0.589 1.316 5.515 50.833 54.921 LGA T 16 T 16 3.322 0 0.275 0.908 3.940 55.357 50.204 LGA V 17 V 17 2.387 0 0.069 0.187 5.009 73.095 57.007 LGA T 18 T 18 1.742 0 0.036 0.210 3.513 75.238 66.599 LGA D 19 D 19 2.918 0 0.130 0.313 5.470 64.881 47.560 LGA I 20 I 20 1.541 0 0.049 1.047 4.753 88.571 67.917 LGA K 21 K 21 2.128 0 0.006 0.991 6.556 69.286 47.778 LGA D 22 D 22 3.682 0 0.031 0.101 5.554 46.905 36.607 LGA L 23 L 23 2.903 0 0.047 0.813 6.128 59.048 45.238 LGA T 24 T 24 0.672 0 0.049 1.067 3.024 79.405 75.850 LGA K 25 K 25 3.920 0 0.095 1.075 11.477 40.952 26.138 LGA L 26 L 26 5.393 0 0.210 0.594 9.510 26.667 17.857 LGA G 27 G 27 3.461 0 0.231 0.231 4.326 43.452 43.452 LGA A 28 A 28 3.614 0 0.050 0.054 3.728 50.119 48.762 LGA I 29 I 29 3.388 0 0.078 1.111 6.996 43.452 40.060 LGA Y 30 Y 30 4.203 0 0.063 1.293 13.665 41.786 18.532 LGA D 31 D 31 3.948 0 0.232 0.311 4.680 37.262 41.131 LGA K 32 K 32 4.043 0 0.586 0.873 5.064 38.810 36.085 LGA T 33 T 33 3.346 0 0.686 0.620 5.002 54.048 44.422 LGA K 34 K 34 2.991 0 0.190 1.423 8.657 61.429 35.079 LGA K 35 K 35 5.245 0 0.253 0.735 9.594 28.214 16.825 LGA Y 36 Y 36 4.658 0 0.068 1.417 8.089 35.833 25.754 LGA W 37 W 37 4.051 0 0.069 1.228 5.396 41.905 39.150 LGA V 38 V 38 3.175 0 0.043 0.166 3.432 50.000 50.000 LGA Y 39 Y 39 2.871 0 0.055 0.315 3.342 57.143 54.762 LGA Q 40 Q 40 2.394 0 0.107 0.951 4.578 62.857 53.810 LGA G 41 G 41 2.301 0 0.098 0.098 2.398 64.762 64.762 LGA K 42 K 42 1.877 0 0.046 0.950 4.403 68.810 66.190 LGA P 43 P 43 2.541 0 0.053 0.177 2.965 59.048 59.320 LGA V 44 V 44 4.136 0 0.060 1.133 5.290 38.929 37.483 LGA M 45 M 45 6.558 0 0.177 0.988 10.584 13.690 8.512 LGA P 46 P 46 8.229 0 0.074 0.077 9.149 4.048 5.442 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 4.898 4.837 6.087 46.769 39.915 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 26 3.03 62.857 61.463 0.830 LGA_LOCAL RMSD: 3.034 Number of atoms: 26 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 4.970 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 4.898 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.874082 * X + 0.151465 * Y + 0.461561 * Z + -129.072418 Y_new = 0.056221 * X + 0.975305 * Y + -0.213587 * Z + -123.217171 Z_new = -0.482514 * X + -0.160743 * Y + -0.861012 * Z + -35.609112 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.077362 0.503523 -2.957026 [DEG: 176.3198 28.8497 -169.4251 ] ZXZ: 1.137391 2.608053 -1.892370 [DEG: 65.1677 149.4304 -108.4248 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS452_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS452_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 26 3.03 61.463 4.90 REMARK ---------------------------------------------------------- MOLECULE T0548TS452_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3l2t_A ATOM 87 N HIS 12 -37.179 -17.313 22.962 1.00 99.90 N ATOM 88 CA HIS 12 -38.327 -17.281 23.772 1.00 99.90 C ATOM 89 C HIS 12 -38.026 -17.715 25.170 1.00 99.90 C ATOM 90 O HIS 12 -37.735 -16.852 25.994 1.00 99.90 O ATOM 91 CB HIS 12 -39.433 -18.158 23.110 1.00 99.90 C ATOM 92 CG HIS 12 -39.821 -17.732 21.718 1.00 99.90 C ATOM 93 ND1 HIS 12 -39.949 -18.593 20.648 1.00 99.90 N ATOM 94 CD2 HIS 12 -40.133 -16.499 21.235 1.00 99.90 C ATOM 95 CE1 HIS 12 -40.321 -17.844 19.581 1.00 99.90 C ATOM 96 NE2 HIS 12 -40.445 -16.565 19.889 1.00 99.90 N ATOM 97 N PHE 13 -38.119 -19.024 25.490 1.00 99.90 N ATOM 98 CA PHE 13 -38.797 -19.357 26.718 1.00 99.90 C ATOM 99 C PHE 13 -37.990 -18.962 27.902 1.00 99.90 C ATOM 100 O PHE 13 -37.136 -19.713 28.385 1.00 99.90 O ATOM 101 CB PHE 13 -39.184 -20.816 26.908 1.00 99.90 C ATOM 102 CG PHE 13 -40.115 -20.666 28.048 1.00 99.90 C ATOM 103 CD1 PHE 13 -40.122 -21.550 29.093 1.00 99.90 C ATOM 104 CD2 PHE 13 -40.963 -19.584 28.072 1.00 99.90 C ATOM 105 CE1 PHE 13 -40.994 -21.365 30.136 1.00 99.90 C ATOM 106 CE2 PHE 13 -41.832 -19.391 29.115 1.00 99.90 C ATOM 107 CZ PHE 13 -41.847 -20.290 30.152 1.00 99.90 C ATOM 108 N HIS 14 -38.285 -17.746 28.375 1.00 99.90 N ATOM 109 CA HIS 14 -37.756 -17.257 29.597 1.00 99.90 C ATOM 110 C HIS 14 -38.655 -17.736 30.688 1.00 99.90 C ATOM 111 O HIS 14 -39.519 -16.987 31.137 1.00 99.90 O ATOM 112 CB HIS 14 -37.749 -15.728 29.656 1.00 99.90 C ATOM 113 CG HIS 14 -37.030 -15.118 28.494 1.00 99.90 C ATOM 114 ND1 HIS 14 -37.642 -14.410 27.489 1.00 99.90 N ATOM 115 CD2 HIS 14 -35.707 -15.130 28.185 1.00 99.90 C ATOM 116 CE1 HIS 14 -36.664 -14.033 26.625 1.00 99.90 C ATOM 117 NE2 HIS 14 -35.472 -14.446 27.006 1.00 99.90 N ATOM 118 N TYR 15 -38.449 -18.976 31.175 1.00 99.90 N ATOM 119 CA TYR 15 -38.776 -19.223 32.554 1.00 99.90 C ATOM 120 C TYR 15 -37.640 -18.715 33.388 1.00 99.90 C ATOM 121 O TYR 15 -37.558 -19.000 34.585 1.00 99.90 O ATOM 122 CB TYR 15 -38.960 -20.704 32.922 1.00 99.90 C ATOM 123 CG TYR 15 -40.387 -20.893 33.336 1.00 99.90 C ATOM 124 CD1 TYR 15 -40.946 -22.149 33.363 1.00 99.90 C ATOM 125 CD2 TYR 15 -41.171 -19.817 33.687 1.00 99.90 C ATOM 126 CE1 TYR 15 -42.259 -22.336 33.730 1.00 99.90 C ATOM 127 CE2 TYR 15 -42.486 -19.998 34.055 1.00 99.90 C ATOM 128 CZ TYR 15 -43.033 -21.257 34.078 1.00 99.90 C ATOM 129 OH TYR 15 -44.381 -21.443 34.454 1.00 99.90 H ATOM 130 N THR 16 -36.754 -17.935 32.751 1.00 99.90 N ATOM 131 CA THR 16 -36.088 -16.865 33.408 1.00 99.90 C ATOM 132 C THR 16 -37.067 -15.793 33.770 1.00 99.90 C ATOM 133 O THR 16 -37.465 -15.025 32.901 1.00 99.90 O ATOM 134 CB THR 16 -34.989 -16.264 32.603 1.00 99.90 C ATOM 135 OG1 THR 16 -34.574 -17.165 31.586 1.00 99.90 O ATOM 136 CG2 THR 16 -33.824 -15.966 33.558 1.00 99.90 C ATOM 137 N VAL 17 -37.477 -15.703 35.051 1.00 99.90 N ATOM 138 CA VAL 17 -38.717 -15.025 35.382 1.00 99.90 C ATOM 139 C VAL 17 -38.641 -13.547 35.179 1.00 99.90 C ATOM 140 O VAL 17 -39.636 -12.954 34.761 1.00 99.90 O ATOM 141 CB VAL 17 -39.150 -15.306 36.795 1.00 99.90 C ATOM 142 CG1 VAL 17 -40.476 -14.571 37.057 1.00 99.90 C ATOM 143 CG2 VAL 17 -39.262 -16.833 36.980 1.00 99.90 C ATOM 144 N THR 18 -37.485 -12.917 35.434 1.00 99.90 N ATOM 145 CA THR 18 -37.341 -11.512 35.135 1.00 99.90 C ATOM 146 C THR 18 -37.520 -11.295 33.662 1.00 99.90 C ATOM 147 O THR 18 -38.154 -10.331 33.221 1.00 99.90 O ATOM 148 CB THR 18 -35.994 -10.991 35.526 1.00 99.90 C ATOM 149 OG1 THR 18 -35.896 -10.951 36.942 1.00 99.90 O ATOM 150 CG2 THR 18 -35.803 -9.579 34.951 1.00 99.90 C ATOM 151 N ASP 19 -36.959 -12.211 32.861 1.00 99.90 N ATOM 152 CA ASP 19 -36.997 -12.046 31.440 1.00 99.90 C ATOM 153 C ASP 19 -38.323 -12.474 30.877 1.00 99.90 C ATOM 154 O ASP 19 -38.698 -11.966 29.818 1.00 99.90 O ATOM 155 CB ASP 19 -35.894 -12.856 30.772 1.00 99.90 C ATOM 156 CG ASP 19 -34.618 -12.581 31.552 1.00 99.90 C ATOM 157 OD1 ASP 19 -34.517 -11.501 32.196 1.00 99.90 O ATOM 158 OD2 ASP 19 -33.724 -13.464 31.515 1.00 99.90 O ATOM 159 N ILE 20 -39.085 -13.374 31.542 1.00 99.90 N ATOM 160 CA ILE 20 -40.418 -13.584 31.034 1.00 99.90 C ATOM 161 C ILE 20 -41.313 -12.431 31.383 1.00 99.90 C ATOM 162 O ILE 20 -42.232 -12.110 30.623 1.00 99.90 O ATOM 163 CB ILE 20 -41.152 -14.827 31.459 1.00 99.90 C ATOM 164 CG1 ILE 20 -42.153 -15.180 30.345 1.00 99.90 C ATOM 165 CG2 ILE 20 -41.846 -14.622 32.815 1.00 99.90 C ATOM 166 CD1 ILE 20 -43.306 -16.058 30.817 1.00 99.90 C ATOM 167 N LYS 21 -41.051 -11.768 32.523 1.00 99.90 N ATOM 168 CA LYS 21 -41.792 -10.591 32.859 1.00 99.90 C ATOM 169 C LYS 21 -41.556 -9.522 31.803 1.00 99.90 C ATOM 170 O LYS 21 -42.490 -8.871 31.318 1.00 99.90 O ATOM 171 CB LYS 21 -41.427 -10.006 34.231 1.00 99.90 C ATOM 172 CG LYS 21 -42.147 -8.698 34.555 1.00 99.90 C ATOM 173 CD LYS 21 -41.761 -8.115 35.916 1.00 99.90 C ATOM 174 CE LYS 21 -40.328 -7.580 35.978 1.00 99.90 C ATOM 175 NZ LYS 21 -39.887 -7.508 37.391 1.00 99.90 N ATOM 176 N ASP 22 -40.277 -9.346 31.416 1.00 99.90 N ATOM 177 CA ASP 22 -39.888 -8.354 30.445 1.00 99.90 C ATOM 178 C ASP 22 -40.381 -8.730 29.087 1.00 99.90 C ATOM 179 O ASP 22 -40.729 -7.842 28.311 1.00 99.90 O ATOM 180 CB ASP 22 -38.359 -8.173 30.383 1.00 99.90 C ATOM 181 CG ASP 22 -37.850 -7.513 31.666 1.00 99.90 C ATOM 182 OD1 ASP 22 -38.666 -6.923 32.426 1.00 99.90 O ATOM 183 OD2 ASP 22 -36.612 -7.582 31.887 1.00 99.90 O ATOM 184 N LEU 23 -40.420 -10.039 28.773 1.00 99.90 N ATOM 185 CA LEU 23 -40.894 -10.480 27.489 1.00 99.90 C ATOM 186 C LEU 23 -42.367 -10.157 27.348 1.00 99.90 C ATOM 187 O LEU 23 -42.821 -9.742 26.279 1.00 99.90 O ATOM 188 CB LEU 23 -40.723 -11.981 27.249 1.00 99.90 C ATOM 189 CG LEU 23 -39.599 -12.282 26.247 1.00 99.90 C ATOM 190 CD1 LEU 23 -40.146 -12.634 24.860 1.00 99.90 C ATOM 191 CD2 LEU 23 -38.579 -11.141 26.202 1.00 99.90 C ATOM 192 N THR 24 -43.155 -10.331 28.423 1.00 99.90 N ATOM 193 CA THR 24 -44.572 -10.071 28.341 1.00 99.90 C ATOM 194 C THR 24 -44.785 -8.602 28.117 1.00 99.90 C ATOM 195 O THR 24 -45.591 -8.205 27.271 1.00 99.90 O ATOM 196 CB THR 24 -45.276 -10.484 29.598 1.00 99.90 C ATOM 197 OG1 THR 24 -44.994 -11.844 29.906 1.00 99.90 O ATOM 198 CG2 THR 24 -46.784 -10.286 29.399 1.00 99.90 C ATOM 199 N LYS 25 -44.045 -7.758 28.852 1.00 99.90 N ATOM 200 CA LYS 25 -44.195 -6.330 28.726 1.00 99.90 C ATOM 201 C LYS 25 -43.776 -5.858 27.357 1.00 99.90 C ATOM 202 O LYS 25 -44.421 -4.990 26.763 1.00 99.90 O ATOM 203 CB LYS 25 -43.351 -5.577 29.763 1.00 99.90 C ATOM 204 CG LYS 25 -44.112 -4.454 30.463 1.00 99.90 C ATOM 205 CD LYS 25 -44.021 -4.512 31.991 1.00 99.90 C ATOM 206 CE LYS 25 -45.226 -3.895 32.708 1.00 99.90 C ATOM 207 NZ LYS 25 -45.344 -4.459 34.072 1.00 99.90 N ATOM 208 N LEU 26 -42.677 -6.432 26.844 1.00 99.90 N ATOM 209 CA LEU 26 -42.077 -6.024 25.605 1.00 99.90 C ATOM 210 C LEU 26 -43.001 -6.452 24.500 1.00 99.90 C ATOM 211 O LEU 26 -43.498 -5.632 23.721 1.00 99.90 O ATOM 212 CB LEU 26 -40.718 -6.696 25.358 1.00 99.90 C ATOM 213 CG LEU 26 -39.663 -5.820 24.661 1.00 99.90 C ATOM 214 CD1 LEU 26 -40.310 -4.671 23.867 1.00 99.90 C ATOM 215 CD2 LEU 26 -38.596 -5.343 25.658 1.00 99.90 C ATOM 216 N GLY 27 -43.251 -7.772 24.432 1.00 99.90 N ATOM 217 CA GLY 27 -44.583 -8.198 24.133 1.00 99.90 C ATOM 218 C GLY 27 -44.546 -9.395 23.244 1.00 99.90 C ATOM 219 O GLY 27 -45.032 -9.355 22.112 1.00 99.90 O ATOM 220 N ALA 28 -43.983 -10.500 23.753 1.00 99.90 N ATOM 221 CA ALA 28 -44.269 -11.779 23.171 1.00 99.90 C ATOM 222 C ALA 28 -45.285 -12.432 24.061 1.00 99.90 C ATOM 223 O ALA 28 -45.360 -12.080 25.242 1.00 99.90 O ATOM 224 CB ALA 28 -43.044 -12.708 23.074 1.00 99.90 C ATOM 225 N ILE 29 -46.108 -13.366 23.510 1.00 99.90 N ATOM 226 CA ILE 29 -47.160 -13.892 24.326 1.00 99.90 C ATOM 227 C ILE 29 -46.967 -15.370 24.389 1.00 99.90 C ATOM 228 O ILE 29 -46.779 -16.024 23.366 1.00 99.90 O ATOM 229 CB ILE 29 -48.531 -13.653 23.765 1.00 99.90 C ATOM 230 CG1 ILE 29 -48.814 -12.144 23.661 1.00 99.90 C ATOM 231 CG2 ILE 29 -49.543 -14.411 24.642 1.00 99.90 C ATOM 232 CD1 ILE 29 -50.056 -11.813 22.836 1.00 99.90 C ATOM 233 N TYR 30 -46.999 -15.935 25.611 1.00 99.90 N ATOM 234 CA TYR 30 -46.825 -17.349 25.748 1.00 99.90 C ATOM 235 C TYR 30 -48.111 -17.889 26.270 1.00 99.90 C ATOM 236 O TYR 30 -48.667 -17.375 27.241 1.00 99.90 O ATOM 237 CB TYR 30 -45.731 -17.739 26.756 1.00 99.90 C ATOM 238 CG TYR 30 -44.424 -17.273 26.214 1.00 99.90 C ATOM 239 CD1 TYR 30 -43.727 -18.043 25.313 1.00 99.90 C ATOM 240 CD2 TYR 30 -43.895 -16.064 26.606 1.00 99.90 C ATOM 241 CE1 TYR 30 -42.520 -17.615 24.810 1.00 99.90 C ATOM 242 CE2 TYR 30 -42.689 -15.631 26.107 1.00 99.90 C ATOM 243 CZ TYR 30 -42.000 -16.408 25.207 1.00 99.90 C ATOM 244 OH TYR 30 -40.762 -15.967 24.694 1.00 99.90 H ATOM 245 N ASP 31 -48.636 -18.941 25.616 1.00 99.90 N ATOM 246 CA ASP 31 -49.865 -19.522 26.059 1.00 99.90 C ATOM 247 C ASP 31 -49.554 -20.260 27.317 1.00 99.90 C ATOM 248 O ASP 31 -48.452 -20.777 27.489 1.00 99.90 O ATOM 249 CB ASP 31 -50.460 -20.526 25.056 1.00 99.90 C ATOM 250 CG ASP 31 -51.885 -20.862 25.475 1.00 99.90 C ATOM 251 OD1 ASP 31 -52.485 -21.770 24.841 1.00 99.90 O ATOM 252 OD2 ASP 31 -52.400 -20.211 26.423 1.00 99.90 O ATOM 253 N LYS 32 -50.522 -20.309 28.249 1.00 99.90 N ATOM 254 CA LYS 32 -50.274 -21.006 29.469 1.00 99.90 C ATOM 255 C LYS 32 -51.266 -22.112 29.552 1.00 99.90 C ATOM 256 O LYS 32 -52.467 -21.905 29.381 1.00 99.90 O ATOM 257 CB LYS 32 -50.473 -20.134 30.720 1.00 99.90 C ATOM 258 CG LYS 32 -49.502 -18.952 30.800 1.00 99.90 C ATOM 259 CD LYS 32 -49.904 -17.903 31.840 1.00 99.90 C ATOM 260 CE LYS 32 -48.936 -16.720 31.920 1.00 99.90 C ATOM 261 NZ LYS 32 -49.107 -15.848 30.739 1.00 99.90 N ATOM 262 N THR 33 -50.773 -23.336 29.797 1.00 99.90 N ATOM 263 CA THR 33 -51.652 -24.450 29.961 1.00 99.90 C ATOM 264 C THR 33 -51.297 -25.023 31.285 1.00 99.90 C ATOM 265 O THR 33 -50.132 -25.018 31.681 1.00 99.90 O ATOM 266 CB THR 33 -51.458 -25.528 28.937 1.00 99.90 C ATOM 267 OG1 THR 33 -51.668 -25.010 27.632 1.00 99.90 O ATOM 268 CG2 THR 33 -52.455 -26.664 29.224 1.00 99.90 C ATOM 269 N LYS 34 -52.300 -25.525 32.024 1.00 99.90 N ATOM 270 CA LYS 34 -51.982 -26.054 33.311 1.00 99.90 C ATOM 271 C LYS 34 -51.047 -27.192 33.092 1.00 99.90 C ATOM 272 O LYS 34 -50.040 -27.325 33.784 1.00 99.90 O ATOM 273 CB LYS 34 -53.212 -26.599 34.058 1.00 99.90 C ATOM 274 CG LYS 34 -53.892 -27.766 33.344 1.00 99.90 C ATOM 275 CD LYS 34 -54.421 -27.407 31.952 1.00 99.90 C ATOM 276 CE LYS 34 -55.641 -26.483 31.985 1.00 99.90 C ATOM 277 NZ LYS 34 -55.237 -25.127 32.417 1.00 99.90 N ATOM 278 N LYS 35 -51.352 -28.037 32.092 1.00 99.90 N ATOM 279 CA LYS 35 -50.515 -29.175 31.879 1.00 99.90 C ATOM 280 C LYS 35 -49.141 -28.717 31.515 1.00 99.90 C ATOM 281 O LYS 35 -48.166 -29.113 32.153 1.00 99.90 O ATOM 282 CB LYS 35 -51.019 -30.077 30.740 1.00 99.90 C ATOM 283 CG LYS 35 -52.348 -30.766 31.055 1.00 99.90 C ATOM 284 CD LYS 35 -53.014 -31.405 29.835 1.00 99.90 C ATOM 285 CE LYS 35 -54.343 -32.094 30.153 1.00 99.90 C ATOM 286 NZ LYS 35 -55.380 -31.082 30.447 1.00 99.90 N ATOM 287 N TYR 36 -49.014 -27.846 30.495 1.00 99.90 N ATOM 288 CA TYR 36 -47.685 -27.458 30.121 1.00 99.90 C ATOM 289 C TYR 36 -47.694 -26.042 29.645 1.00 99.90 C ATOM 290 O TYR 36 -48.731 -25.504 29.260 1.00 99.90 O ATOM 291 CB TYR 36 -47.105 -28.307 28.976 1.00 99.90 C ATOM 292 CG TYR 36 -46.969 -29.705 29.472 1.00 99.90 C ATOM 293 CD1 TYR 36 -48.052 -30.555 29.472 1.00 99.90 C ATOM 294 CD2 TYR 36 -45.759 -30.171 29.933 1.00 99.90 C ATOM 295 CE1 TYR 36 -47.932 -31.847 29.928 1.00 99.90 C ATOM 296 CE2 TYR 36 -45.631 -31.462 30.389 1.00 99.90 C ATOM 297 CZ TYR 36 -46.719 -32.302 30.388 1.00 99.90 C ATOM 298 OH TYR 36 -46.592 -33.626 30.855 1.00 99.90 H ATOM 299 N TRP 37 -46.513 -25.395 29.686 1.00 99.90 N ATOM 300 CA TRP 37 -46.389 -24.060 29.185 1.00 99.90 C ATOM 301 C TRP 37 -46.166 -24.202 27.714 1.00 99.90 C ATOM 302 O TRP 37 -45.416 -25.076 27.285 1.00 99.90 O ATOM 303 CB TRP 37 -45.178 -23.310 29.768 1.00 99.90 C ATOM 304 CG TRP 37 -45.014 -21.892 29.279 1.00 99.90 C ATOM 305 CD1 TRP 37 -44.357 -21.416 28.183 1.00 99.90 C ATOM 306 CD2 TRP 37 -45.551 -20.748 29.961 1.00 99.90 C ATOM 307 NE1 TRP 37 -44.450 -20.045 28.139 1.00 99.90 N ATOM 308 CE2 TRP 37 -45.182 -19.621 29.228 1.00 99.90 C ATOM 309 CE3 TRP 37 -46.287 -20.647 31.107 1.00 99.90 C ATOM 310 CZ2 TRP 37 -45.546 -18.368 29.633 1.00 99.90 C ATOM 311 CZ3 TRP 37 -46.654 -19.383 31.510 1.00 99.90 C ATOM 312 CH2 TRP 37 -46.291 -18.266 30.787 1.00 99.90 H ATOM 313 N VAL 38 -46.821 -23.358 26.889 1.00 99.90 N ATOM 314 CA VAL 38 -46.615 -23.532 25.480 1.00 99.90 C ATOM 315 C VAL 38 -46.535 -22.197 24.813 1.00 99.90 C ATOM 316 O VAL 38 -47.170 -21.232 25.236 1.00 99.90 O ATOM 317 CB VAL 38 -47.722 -24.288 24.808 1.00 99.90 C ATOM 318 CG1 VAL 38 -47.451 -24.315 23.295 1.00 99.90 C ATOM 319 CG2 VAL 38 -47.825 -25.681 25.452 1.00 99.90 C ATOM 320 N TYR 39 -45.705 -22.112 23.753 1.00 99.90 N ATOM 321 CA TYR 39 -45.592 -20.920 22.959 1.00 99.90 C ATOM 322 C TYR 39 -45.535 -21.349 21.527 1.00 99.90 C ATOM 323 O TYR 39 -44.908 -22.352 21.198 1.00 99.90 O ATOM 324 CB TYR 39 -44.314 -20.105 23.239 1.00 99.90 C ATOM 325 CG TYR 39 -44.256 -18.985 22.254 1.00 99.90 C ATOM 326 CD1 TYR 39 -43.635 -19.154 21.036 1.00 99.90 C ATOM 327 CD2 TYR 39 -44.825 -17.765 22.543 1.00 99.90 C ATOM 328 CE1 TYR 39 -43.581 -18.127 20.123 1.00 99.90 C ATOM 329 CE2 TYR 39 -44.772 -16.735 21.632 1.00 99.90 C ATOM 330 CZ TYR 39 -44.151 -16.914 20.422 1.00 99.90 C ATOM 331 OH TYR 39 -44.097 -15.857 19.488 1.00 99.90 H ATOM 332 N GLN 40 -46.201 -20.605 20.627 1.00 99.90 N ATOM 333 CA GLN 40 -46.147 -20.915 19.225 1.00 99.90 C ATOM 334 C GLN 40 -46.662 -22.303 19.028 1.00 99.90 C ATOM 335 O GLN 40 -46.409 -22.931 18.000 1.00 99.90 O ATOM 336 CB GLN 40 -44.723 -20.817 18.650 1.00 99.90 C ATOM 337 CG GLN 40 -44.648 -21.015 17.133 1.00 99.90 C ATOM 338 CD GLN 40 -43.188 -20.889 16.718 1.00 99.90 C ATOM 339 OE1 GLN 40 -42.850 -21.020 15.542 1.00 99.90 O ATOM 340 NE2 GLN 40 -42.295 -20.629 17.709 1.00 99.90 N ATOM 341 N GLY 41 -47.440 -22.805 20.002 1.00 99.90 N ATOM 342 CA GLY 41 -48.024 -24.108 19.875 1.00 99.90 C ATOM 343 C GLY 41 -47.045 -25.148 20.331 1.00 99.90 C ATOM 344 O GLY 41 -47.406 -26.320 20.424 1.00 99.90 O ATOM 345 N LYS 42 -45.792 -24.749 20.640 1.00 99.90 N ATOM 346 CA LYS 42 -44.784 -25.689 21.054 1.00 99.90 C ATOM 347 C LYS 42 -44.659 -25.618 22.542 1.00 99.90 C ATOM 348 O LYS 42 -44.718 -24.551 23.149 1.00 99.90 O ATOM 349 CB LYS 42 -43.390 -25.398 20.472 1.00 99.90 C ATOM 350 CG LYS 42 -43.303 -25.600 18.959 1.00 99.90 C ATOM 351 CD LYS 42 -44.124 -24.589 18.156 1.00 99.90 C ATOM 352 CE LYS 42 -44.032 -24.794 16.642 1.00 99.90 C ATOM 353 NZ LYS 42 -44.853 -23.781 15.942 1.00 99.90 N ATOM 354 N PRO 43 -44.521 -26.771 23.135 1.00 99.90 N ATOM 355 CA PRO 43 -44.390 -26.810 24.564 1.00 99.90 C ATOM 356 C PRO 43 -43.013 -26.466 25.030 1.00 99.90 C ATOM 357 O PRO 43 -42.056 -26.666 24.284 1.00 99.90 O ATOM 358 CB PRO 43 -44.820 -28.211 24.994 1.00 99.90 C ATOM 359 CG PRO 43 -45.780 -28.655 23.879 1.00 99.90 C ATOM 360 CD PRO 43 -45.278 -27.908 22.634 1.00 99.90 C ATOM 361 N VAL 44 -42.897 -25.932 26.261 1.00 99.90 N ATOM 362 CA VAL 44 -41.605 -25.688 26.824 1.00 99.90 C ATOM 363 C VAL 44 -41.500 -26.601 28.002 1.00 99.90 C ATOM 364 O VAL 44 -42.284 -26.523 28.946 1.00 99.90 O ATOM 365 CB VAL 44 -41.391 -24.266 27.269 1.00 99.90 C ATOM 366 CG1 VAL 44 -41.392 -23.372 26.017 1.00 99.90 C ATOM 367 CG2 VAL 44 -42.481 -23.874 28.282 1.00 99.90 C ATOM 368 N MET 45 -40.524 -27.524 27.967 1.00 99.90 N ATOM 369 CA MET 45 -40.393 -28.458 29.042 1.00 99.90 C ATOM 370 C MET 45 -39.567 -27.848 30.119 1.00 99.90 C ATOM 371 O MET 45 -38.883 -26.842 29.935 1.00 99.90 O ATOM 372 CB MET 45 -39.743 -29.794 28.642 1.00 99.90 C ATOM 373 CG MET 45 -40.686 -30.716 27.868 1.00 99.90 C ATOM 374 SD MET 45 -42.075 -31.315 28.876 1.00 99.90 S ATOM 375 CE MET 45 -42.693 -32.510 27.661 1.00 99.90 C ATOM 376 N PRO 46 -39.653 -28.460 31.263 1.00 99.90 N ATOM 377 CA PRO 46 -38.880 -28.011 32.381 1.00 99.90 C ATOM 378 C PRO 46 -37.449 -28.296 32.081 1.00 99.90 C ATOM 379 O PRO 46 -37.173 -29.182 31.274 1.00 99.90 O ATOM 380 CB PRO 46 -39.438 -28.751 33.595 1.00 99.90 C ATOM 381 CG PRO 46 -40.905 -29.014 33.210 1.00 99.90 C ATOM 382 CD PRO 46 -40.886 -29.111 31.675 1.00 99.90 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 48.04 70.6 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 15.69 94.1 34 100.0 34 ARMSMC SURFACE . . . . . . . . 49.19 66.1 56 100.0 56 ARMSMC BURIED . . . . . . . . 42.26 91.7 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.24 46.9 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 81.22 44.8 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 69.81 58.8 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 80.80 48.1 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 77.12 40.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.11 56.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 71.58 66.7 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 59.44 61.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 70.81 59.1 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 107.25 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 100.75 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 87.92 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 123.02 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 100.75 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 96.70 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 96.70 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 105.65 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 96.70 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.90 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.90 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.1400 CRMSCA SECONDARY STRUCTURE . . 3.30 17 100.0 17 CRMSCA SURFACE . . . . . . . . 5.12 29 100.0 29 CRMSCA BURIED . . . . . . . . 3.64 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.95 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 3.33 85 100.0 85 CRMSMC SURFACE . . . . . . . . 5.18 143 100.0 143 CRMSMC BURIED . . . . . . . . 3.69 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.03 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 6.08 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 5.51 84 100.0 84 CRMSSC SURFACE . . . . . . . . 7.53 127 100.0 127 CRMSSC BURIED . . . . . . . . 4.26 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.10 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 4.62 152 100.0 152 CRMSALL SURFACE . . . . . . . . 6.46 243 100.0 243 CRMSALL BURIED . . . . . . . . 4.00 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 95.790 0.922 0.926 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 96.815 0.940 0.942 17 100.0 17 ERRCA SURFACE . . . . . . . . 95.652 0.920 0.924 29 100.0 29 ERRCA BURIED . . . . . . . . 96.457 0.934 0.936 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 95.745 0.921 0.925 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 96.806 0.940 0.942 85 100.0 85 ERRMC SURFACE . . . . . . . . 95.615 0.919 0.923 143 100.0 143 ERRMC BURIED . . . . . . . . 96.368 0.932 0.934 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 93.925 0.889 0.897 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 94.501 0.899 0.905 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 94.869 0.905 0.910 84 100.0 84 ERRSC SURFACE . . . . . . . . 93.497 0.882 0.890 127 100.0 127 ERRSC BURIED . . . . . . . . 95.797 0.921 0.925 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 94.842 0.905 0.911 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 95.794 0.922 0.925 152 100.0 152 ERRALL SURFACE . . . . . . . . 94.574 0.901 0.907 243 100.0 243 ERRALL BURIED . . . . . . . . 96.069 0.926 0.929 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 3 11 28 34 35 35 DISTCA CA (P) 2.86 8.57 31.43 80.00 97.14 35 DISTCA CA (RMS) 0.46 1.15 2.22 3.22 4.24 DISTCA ALL (N) 5 25 62 196 272 296 296 DISTALL ALL (P) 1.69 8.45 20.95 66.22 91.89 296 DISTALL ALL (RMS) 0.68 1.43 2.15 3.40 4.72 DISTALL END of the results output