####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS447_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS447_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 15 - 38 4.91 8.80 LCS_AVERAGE: 62.69 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 17 - 25 1.96 18.23 LONGEST_CONTINUOUS_SEGMENT: 9 18 - 26 1.41 19.77 LCS_AVERAGE: 17.55 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 18 - 25 0.49 19.72 LCS_AVERAGE: 13.71 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 4 18 3 3 4 4 4 4 4 7 10 12 15 16 16 19 21 22 23 27 29 32 LCS_GDT F 13 F 13 3 4 19 3 3 4 4 4 4 8 9 11 12 15 16 24 27 29 29 31 32 34 34 LCS_GDT H 14 H 14 4 5 19 3 4 4 5 6 7 11 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT Y 15 Y 15 4 5 24 3 4 5 6 7 9 12 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT T 16 T 16 4 5 24 3 4 4 6 7 9 12 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT V 17 V 17 4 9 24 3 4 4 6 7 9 12 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT T 18 T 18 8 9 24 6 8 8 8 9 9 12 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT D 19 D 19 8 9 24 6 8 8 8 9 9 9 11 16 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT I 20 I 20 8 9 24 6 8 8 8 9 9 9 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT K 21 K 21 8 9 24 6 8 8 8 9 9 12 14 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT D 22 D 22 8 9 24 6 8 8 8 9 9 9 11 15 17 22 25 27 27 29 29 31 32 34 34 LCS_GDT L 23 L 23 8 9 24 6 8 8 8 9 9 9 11 13 16 20 24 27 27 29 29 31 32 34 34 LCS_GDT T 24 T 24 8 9 24 5 8 8 8 9 9 12 14 17 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT K 25 K 25 8 9 24 5 8 8 8 9 9 9 10 12 16 20 21 23 27 28 29 31 32 34 34 LCS_GDT L 26 L 26 4 9 24 3 4 4 5 9 9 9 10 12 16 20 20 22 23 26 29 30 32 34 34 LCS_GDT G 27 G 27 4 8 24 3 4 4 4 5 8 9 10 12 16 20 20 22 24 28 29 31 32 34 34 LCS_GDT A 28 A 28 4 5 24 3 4 4 4 5 6 8 10 12 16 20 20 22 23 24 26 29 30 34 34 LCS_GDT I 29 I 29 4 5 24 3 4 4 4 5 7 8 10 12 16 20 20 22 23 28 29 31 32 34 34 LCS_GDT Y 30 Y 30 4 5 24 3 3 4 4 5 7 8 11 12 16 20 23 27 27 29 29 31 32 34 34 LCS_GDT D 31 D 31 5 5 24 4 5 5 5 6 7 8 11 14 19 22 25 27 27 29 29 31 32 34 34 LCS_GDT K 32 K 32 5 5 24 4 5 5 6 7 9 12 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT T 33 T 33 5 5 24 4 5 5 5 6 9 12 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT K 34 K 34 5 5 24 4 5 5 5 6 7 8 14 15 17 21 23 25 27 29 29 30 32 34 34 LCS_GDT K 35 K 35 5 5 24 4 5 5 5 6 7 9 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT Y 36 Y 36 3 4 24 3 3 3 4 5 6 12 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT W 37 W 37 3 4 24 1 3 4 4 4 4 7 8 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT V 38 V 38 3 4 24 1 3 5 6 7 9 12 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT Y 39 Y 39 3 6 17 3 3 4 4 6 7 10 11 16 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT Q 40 Q 40 3 6 17 3 3 4 4 6 7 10 11 15 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT G 41 G 41 4 6 17 3 3 5 6 7 9 12 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT K 42 K 42 4 6 17 3 3 5 6 7 9 12 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT P 43 P 43 4 6 17 3 3 4 6 7 9 12 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT V 44 V 44 4 6 17 3 3 4 5 7 7 8 8 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT M 45 M 45 3 3 17 3 3 4 6 7 9 12 15 18 19 23 25 27 27 29 29 31 32 34 34 LCS_GDT P 46 P 46 3 3 17 3 3 3 3 4 6 10 14 15 19 23 25 27 27 29 29 31 32 34 34 LCS_AVERAGE LCS_A: 31.32 ( 13.71 17.55 62.69 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 8 8 8 9 9 12 15 18 19 23 25 27 27 29 29 31 32 34 34 GDT PERCENT_AT 17.14 22.86 22.86 22.86 25.71 25.71 34.29 42.86 51.43 54.29 65.71 71.43 77.14 77.14 82.86 82.86 88.57 91.43 97.14 97.14 GDT RMS_LOCAL 0.27 0.49 0.49 0.49 1.41 1.41 2.60 3.00 3.31 3.41 3.99 4.26 4.54 4.54 4.89 4.89 5.52 5.64 6.12 6.12 GDT RMS_ALL_AT 19.87 19.72 19.72 19.72 19.77 19.77 7.22 7.95 7.91 8.00 7.44 7.15 6.92 6.92 6.97 6.97 6.53 6.55 6.49 6.49 # Checking swapping # possible swapping detected: D 19 D 19 # possible swapping detected: D 22 D 22 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 14.155 0 0.165 1.131 16.079 0.000 0.000 LGA F 13 F 13 9.797 0 0.124 1.230 17.805 5.119 1.861 LGA H 14 H 14 3.568 0 0.567 1.180 6.827 42.976 37.190 LGA Y 15 Y 15 2.405 0 0.092 0.456 6.576 70.952 45.556 LGA T 16 T 16 1.822 0 0.047 0.079 3.041 63.095 66.259 LGA V 17 V 17 3.256 0 0.603 0.858 5.009 59.167 49.048 LGA T 18 T 18 3.174 0 0.548 0.974 6.652 50.119 36.735 LGA D 19 D 19 5.625 0 0.078 1.053 9.916 29.405 15.714 LGA I 20 I 20 4.041 0 0.085 0.631 10.123 47.143 30.417 LGA K 21 K 21 4.895 0 0.057 0.891 14.717 28.214 14.339 LGA D 22 D 22 8.100 0 0.048 1.400 11.286 7.262 3.988 LGA L 23 L 23 8.474 0 0.050 1.312 12.452 5.000 3.095 LGA T 24 T 24 6.627 0 0.456 1.325 9.525 8.452 16.735 LGA K 25 K 25 12.469 0 0.122 0.484 19.607 0.000 0.000 LGA L 26 L 26 16.848 0 0.658 1.429 21.711 0.000 0.000 LGA G 27 G 27 15.568 0 0.247 0.247 16.239 0.000 0.000 LGA A 28 A 28 17.458 0 0.616 0.596 18.878 0.000 0.000 LGA I 29 I 29 14.443 0 0.546 1.442 15.409 0.000 0.000 LGA Y 30 Y 30 9.349 0 0.094 1.235 12.282 9.405 3.413 LGA D 31 D 31 7.157 0 0.569 1.037 11.327 22.976 11.548 LGA K 32 K 32 3.921 0 0.076 1.192 12.519 51.071 27.831 LGA T 33 T 33 2.265 0 0.083 0.628 5.158 49.762 50.952 LGA K 34 K 34 6.198 0 0.152 0.774 14.666 22.262 10.741 LGA K 35 K 35 3.554 0 0.184 0.545 9.369 45.238 31.481 LGA Y 36 Y 36 3.606 0 0.573 1.357 7.603 50.357 33.294 LGA W 37 W 37 4.818 0 0.590 0.818 11.846 37.500 12.687 LGA V 38 V 38 2.095 0 0.609 0.529 5.971 61.190 46.395 LGA Y 39 Y 39 6.616 0 0.602 1.464 16.993 22.024 7.579 LGA Q 40 Q 40 7.352 0 0.393 1.151 14.036 20.714 9.418 LGA G 41 G 41 3.350 0 0.296 0.296 3.813 46.667 46.667 LGA K 42 K 42 2.312 0 0.136 0.992 7.216 62.976 41.376 LGA P 43 P 43 2.725 0 0.662 0.640 3.413 61.071 59.456 LGA V 44 V 44 4.560 0 0.618 0.589 7.671 38.929 28.163 LGA M 45 M 45 1.335 0 0.599 0.987 9.191 71.190 44.821 LGA P 46 P 46 5.459 0 0.226 0.241 7.550 22.500 25.238 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 6.444 6.323 7.878 31.793 23.200 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 15 3.00 42.857 37.007 0.484 LGA_LOCAL RMSD: 3.002 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.950 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 6.444 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.795324 * X + 0.379403 * Y + -0.472771 * Z + -69.588333 Y_new = -0.198301 * X + 0.899842 * Y + 0.388537 * Z + -51.756649 Z_new = 0.572832 * X + -0.215261 * Y + 0.790902 * Z + 44.690056 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.244352 -0.609956 -0.265735 [DEG: -14.0003 -34.9479 -15.2255 ] ZXZ: -2.258706 0.658514 1.930255 [DEG: -129.4143 37.7301 110.5955 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS447_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS447_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 15 3.00 37.007 6.44 REMARK ---------------------------------------------------------- MOLECULE T0548TS447_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 1eqf_A ATOM 87 N HIS 12 -37.055 -18.547 44.201 1.00219.57 N ATOM 88 CA HIS 12 -36.889 -19.447 43.107 1.00219.57 C ATOM 89 ND1 HIS 12 -33.786 -20.690 42.725 1.00219.57 N ATOM 90 CG HIS 12 -34.727 -20.577 43.724 1.00219.57 C ATOM 91 CB HIS 12 -36.197 -20.762 43.499 1.00219.57 C ATOM 92 NE2 HIS 12 -32.678 -20.201 44.591 1.00219.57 N ATOM 93 CD2 HIS 12 -34.037 -20.278 44.856 1.00219.57 C ATOM 94 CE1 HIS 12 -32.577 -20.454 43.300 1.00219.57 C ATOM 95 C HIS 12 -38.198 -19.798 42.506 1.00219.57 C ATOM 96 O HIS 12 -38.992 -20.540 43.082 1.00219.57 O ATOM 97 N PHE 13 -38.448 -19.262 41.300 1.00206.35 N ATOM 98 CA PHE 13 -39.603 -19.672 40.574 1.00206.35 C ATOM 99 CB PHE 13 -39.952 -18.742 39.396 1.00206.35 C ATOM 100 CG PHE 13 -40.435 -17.442 39.935 1.00206.35 C ATOM 101 CD1 PHE 13 -39.588 -16.619 40.636 1.00206.35 C ATOM 102 CD2 PHE 13 -41.728 -17.024 39.708 1.00206.35 C ATOM 103 CE1 PHE 13 -40.026 -15.414 41.126 1.00206.35 C ATOM 104 CE2 PHE 13 -42.169 -15.817 40.198 1.00206.35 C ATOM 105 CZ PHE 13 -41.321 -15.007 40.912 1.00206.35 C ATOM 106 C PHE 13 -39.177 -20.980 40.005 1.00206.35 C ATOM 107 O PHE 13 -37.983 -21.203 39.813 1.00206.35 O ATOM 108 N HIS 14 -40.123 -21.901 39.758 1.00158.40 N ATOM 109 CA HIS 14 -39.705 -23.161 39.218 1.00158.40 C ATOM 110 ND1 HIS 14 -40.023 -26.505 39.231 1.00158.40 N ATOM 111 CG HIS 14 -40.450 -25.459 38.437 1.00158.40 C ATOM 112 CB HIS 14 -40.876 -24.118 38.957 1.00158.40 C ATOM 113 NE2 HIS 14 -39.976 -27.241 37.135 1.00158.40 N ATOM 114 CD2 HIS 14 -40.411 -25.931 37.161 1.00158.40 C ATOM 115 CE1 HIS 14 -39.753 -27.541 38.403 1.00158.40 C ATOM 116 C HIS 14 -39.055 -22.857 37.911 1.00158.40 C ATOM 117 O HIS 14 -37.937 -23.293 37.646 1.00158.40 O ATOM 118 N TYR 15 -39.731 -22.053 37.072 1.00249.34 N ATOM 119 CA TYR 15 -39.118 -21.648 35.843 1.00249.34 C ATOM 120 CB TYR 15 -39.947 -21.848 34.552 1.00249.34 C ATOM 121 CG TYR 15 -40.252 -23.296 34.333 1.00249.34 C ATOM 122 CD1 TYR 15 -39.241 -24.230 34.290 1.00249.34 C ATOM 123 CD2 TYR 15 -41.551 -23.732 34.209 1.00249.34 C ATOM 124 CE1 TYR 15 -39.518 -25.566 34.096 1.00249.34 C ATOM 125 CE2 TYR 15 -41.836 -25.065 34.011 1.00249.34 C ATOM 126 CZ TYR 15 -40.818 -25.987 33.952 1.00249.34 C ATOM 127 OH TYR 15 -41.112 -27.353 33.752 1.00249.34 O ATOM 128 C TYR 15 -38.937 -20.177 35.989 1.00249.34 C ATOM 129 O TYR 15 -39.790 -19.505 36.565 1.00249.34 O ATOM 130 N THR 16 -37.812 -19.639 35.486 1.00171.87 N ATOM 131 CA THR 16 -37.561 -18.238 35.649 1.00171.87 C ATOM 132 CB THR 16 -36.220 -17.802 35.125 1.00171.87 C ATOM 133 OG1 THR 16 -36.145 -18.018 33.723 1.00171.87 O ATOM 134 CG2 THR 16 -35.117 -18.599 35.843 1.00171.87 C ATOM 135 C THR 16 -38.612 -17.498 34.892 1.00171.87 C ATOM 136 O THR 16 -39.256 -18.044 33.998 1.00171.87 O ATOM 137 N VAL 17 -38.833 -16.226 35.278 1.00245.48 N ATOM 138 CA VAL 17 -39.804 -15.393 34.635 1.00245.48 C ATOM 139 CB VAL 17 -40.717 -14.731 35.632 1.00245.48 C ATOM 140 CG1 VAL 17 -39.866 -13.904 36.609 1.00245.48 C ATOM 141 CG2 VAL 17 -41.764 -13.898 34.880 1.00245.48 C ATOM 142 C VAL 17 -39.051 -14.333 33.892 1.00245.48 C ATOM 143 O VAL 17 -38.139 -13.715 34.434 1.00245.48 O ATOM 144 N THR 18 -39.398 -14.106 32.611 1.00226.34 N ATOM 145 CA THR 18 -38.709 -13.090 31.870 1.00226.34 C ATOM 146 CB THR 18 -38.592 -13.385 30.403 1.00226.34 C ATOM 147 OG1 THR 18 -37.712 -12.459 29.783 1.00226.34 O ATOM 148 CG2 THR 18 -39.990 -13.306 29.771 1.00226.34 C ATOM 149 C THR 18 -39.474 -11.819 32.045 1.00226.34 C ATOM 150 O THR 18 -40.424 -11.756 32.824 1.00226.34 O ATOM 151 N ASP 19 -39.062 -10.759 31.328 1.00109.73 N ATOM 152 CA ASP 19 -39.735 -9.500 31.449 1.00109.73 C ATOM 153 CB ASP 19 -39.103 -8.393 30.573 1.00109.73 C ATOM 154 CG ASP 19 -39.240 -8.766 29.103 1.00109.73 C ATOM 155 OD1 ASP 19 -39.092 -9.976 28.782 1.00109.73 O ATOM 156 OD2 ASP 19 -39.503 -7.848 28.278 1.00109.73 O ATOM 157 C ASP 19 -41.147 -9.716 31.008 1.00109.73 C ATOM 158 O ASP 19 -42.085 -9.142 31.558 1.00109.73 O ATOM 159 N ILE 20 -41.328 -10.589 30.002 1.00106.85 N ATOM 160 CA ILE 20 -42.615 -10.841 29.422 1.00106.85 C ATOM 161 CB ILE 20 -42.516 -11.907 28.367 1.00106.85 C ATOM 162 CG2 ILE 20 -43.921 -12.212 27.817 1.00106.85 C ATOM 163 CG1 ILE 20 -41.486 -11.511 27.298 1.00106.85 C ATOM 164 CD1 ILE 20 -41.790 -10.186 26.604 1.00106.85 C ATOM 165 C ILE 20 -43.530 -11.407 30.461 1.00106.85 C ATOM 166 O ILE 20 -44.608 -10.877 30.719 1.00106.85 O ATOM 167 N LYS 21 -43.084 -12.493 31.112 1.00 77.74 N ATOM 168 CA LYS 21 -43.899 -13.193 32.055 1.00 77.74 C ATOM 169 CB LYS 21 -43.295 -14.553 32.445 1.00 77.74 C ATOM 170 CG LYS 21 -43.379 -15.555 31.284 1.00 77.74 C ATOM 171 CD LYS 21 -42.451 -16.768 31.399 1.00 77.74 C ATOM 172 CE LYS 21 -42.663 -17.798 30.287 1.00 77.74 C ATOM 173 NZ LYS 21 -43.891 -18.580 30.557 1.00 77.74 N ATOM 174 C LYS 21 -44.141 -12.345 33.262 1.00 77.74 C ATOM 175 O LYS 21 -45.220 -12.394 33.850 1.00 77.74 O ATOM 176 N ASP 22 -43.153 -11.526 33.662 1.00 82.80 N ATOM 177 CA ASP 22 -43.340 -10.747 34.849 1.00 82.80 C ATOM 178 CB ASP 22 -42.132 -9.877 35.214 1.00 82.80 C ATOM 179 CG ASP 22 -42.299 -9.520 36.682 1.00 82.80 C ATOM 180 OD1 ASP 22 -42.512 -10.459 37.495 1.00 82.80 O ATOM 181 OD2 ASP 22 -42.195 -8.309 37.009 1.00 82.80 O ATOM 182 C ASP 22 -44.490 -9.822 34.632 1.00 82.80 C ATOM 183 O ASP 22 -45.275 -9.559 35.542 1.00 82.80 O ATOM 184 N LEU 23 -44.627 -9.314 33.396 1.00137.33 N ATOM 185 CA LEU 23 -45.670 -8.373 33.130 1.00137.33 C ATOM 186 CB LEU 23 -45.729 -7.970 31.647 1.00137.33 C ATOM 187 CG LEU 23 -46.762 -6.871 31.338 1.00137.33 C ATOM 188 CD1 LEU 23 -46.310 -5.520 31.916 1.00137.33 C ATOM 189 CD2 LEU 23 -47.088 -6.809 29.838 1.00137.33 C ATOM 190 C LEU 23 -46.967 -9.038 33.441 1.00137.33 C ATOM 191 O LEU 23 -47.802 -8.482 34.153 1.00137.33 O ATOM 192 N THR 24 -47.163 -10.268 32.928 1.00180.25 N ATOM 193 CA THR 24 -48.405 -10.918 33.204 1.00180.25 C ATOM 194 CB THR 24 -49.082 -11.426 31.959 1.00180.25 C ATOM 195 OG1 THR 24 -50.308 -12.056 32.298 1.00180.25 O ATOM 196 CG2 THR 24 -48.152 -12.398 31.215 1.00180.25 C ATOM 197 C THR 24 -48.165 -12.065 34.132 1.00180.25 C ATOM 198 O THR 24 -48.471 -13.214 33.818 1.00180.25 O ATOM 199 N LYS 25 -47.619 -11.764 35.325 1.00114.70 N ATOM 200 CA LYS 25 -47.421 -12.777 36.319 1.00114.70 C ATOM 201 CB LYS 25 -46.729 -12.246 37.578 1.00114.70 C ATOM 202 CG LYS 25 -46.569 -13.310 38.661 1.00114.70 C ATOM 203 CD LYS 25 -45.873 -12.787 39.915 1.00114.70 C ATOM 204 CE LYS 25 -46.004 -13.729 41.112 1.00114.70 C ATOM 205 NZ LYS 25 -45.722 -12.993 42.363 1.00114.70 N ATOM 206 C LYS 25 -48.772 -13.218 36.752 1.00114.70 C ATOM 207 O LYS 25 -49.035 -14.408 36.933 1.00114.70 O ATOM 208 N LEU 26 -49.672 -12.227 36.912 1.00206.19 N ATOM 209 CA LEU 26 -50.991 -12.485 37.390 1.00206.19 C ATOM 210 CB LEU 26 -51.819 -11.208 37.643 1.00206.19 C ATOM 211 CG LEU 26 -51.181 -10.286 38.702 1.00206.19 C ATOM 212 CD1 LEU 26 -52.121 -9.139 39.107 1.00206.19 C ATOM 213 CD2 LEU 26 -50.669 -11.096 39.904 1.00206.19 C ATOM 214 C LEU 26 -51.685 -13.317 36.374 1.00206.19 C ATOM 215 O LEU 26 -51.607 -13.081 35.171 1.00206.19 O ATOM 216 N GLY 27 -52.368 -14.354 36.870 1.00104.12 N ATOM 217 CA GLY 27 -53.111 -15.284 36.083 1.00104.12 C ATOM 218 C GLY 27 -53.402 -16.324 37.088 1.00104.12 C ATOM 219 O GLY 27 -53.069 -17.498 36.932 1.00104.12 O ATOM 220 N ALA 28 -54.074 -15.863 38.154 1.00 48.51 N ATOM 221 CA ALA 28 -54.348 -16.608 39.335 1.00 48.51 C ATOM 222 CB ALA 28 -55.120 -15.787 40.383 1.00 48.51 C ATOM 223 C ALA 28 -55.176 -17.788 38.992 1.00 48.51 C ATOM 224 O ALA 28 -55.004 -18.847 39.594 1.00 48.51 O ATOM 225 N ILE 29 -56.087 -17.638 38.010 1.00113.55 N ATOM 226 CA ILE 29 -57.015 -18.695 37.746 1.00113.55 C ATOM 227 CB ILE 29 -57.910 -18.428 36.570 1.00113.55 C ATOM 228 CG2 ILE 29 -58.852 -19.637 36.441 1.00113.55 C ATOM 229 CG1 ILE 29 -58.674 -17.106 36.737 1.00113.55 C ATOM 230 CD1 ILE 29 -57.792 -15.862 36.636 1.00113.55 C ATOM 231 C ILE 29 -56.232 -19.916 37.409 1.00113.55 C ATOM 232 O ILE 29 -56.404 -20.951 38.047 1.00113.55 O ATOM 233 N TYR 30 -55.323 -19.837 36.419 1.00198.10 N ATOM 234 CA TYR 30 -54.487 -20.983 36.210 1.00198.10 C ATOM 235 CB TYR 30 -54.969 -21.961 35.111 1.00198.10 C ATOM 236 CG TYR 30 -56.198 -22.692 35.555 1.00198.10 C ATOM 237 CD1 TYR 30 -56.095 -23.863 36.273 1.00198.10 C ATOM 238 CD2 TYR 30 -57.457 -22.219 35.258 1.00198.10 C ATOM 239 CE1 TYR 30 -57.218 -24.546 36.683 1.00198.10 C ATOM 240 CE2 TYR 30 -58.585 -22.897 35.664 1.00198.10 C ATOM 241 CZ TYR 30 -58.469 -24.064 36.379 1.00198.10 C ATOM 242 OH TYR 30 -59.628 -24.756 36.794 1.00198.10 O ATOM 243 C TYR 30 -53.148 -20.478 35.792 1.00198.10 C ATOM 244 O TYR 30 -52.948 -20.087 34.643 1.00198.10 O ATOM 245 N ASP 31 -52.188 -20.474 36.736 1.00108.05 N ATOM 246 CA ASP 31 -50.858 -20.036 36.438 1.00108.05 C ATOM 247 CB ASP 31 -50.011 -19.867 37.713 1.00108.05 C ATOM 248 CG ASP 31 -48.699 -19.181 37.353 1.00108.05 C ATOM 249 OD1 ASP 31 -48.008 -19.665 36.418 1.00108.05 O ATOM 250 OD2 ASP 31 -48.363 -18.168 38.022 1.00108.05 O ATOM 251 C ASP 31 -50.205 -21.063 35.566 1.00108.05 C ATOM 252 O ASP 31 -49.575 -20.746 34.556 1.00108.05 O ATOM 253 N LYS 32 -50.377 -22.340 35.941 1.00 88.95 N ATOM 254 CA LYS 32 -49.775 -23.449 35.266 1.00 88.95 C ATOM 255 CB LYS 32 -50.136 -24.760 35.976 1.00 88.95 C ATOM 256 CG LYS 32 -51.598 -24.734 36.430 1.00 88.95 C ATOM 257 CD LYS 32 -52.152 -26.052 36.975 1.00 88.95 C ATOM 258 CE LYS 32 -53.218 -26.717 36.097 1.00 88.95 C ATOM 259 NZ LYS 32 -53.948 -27.737 36.886 1.00 88.95 N ATOM 260 C LYS 32 -50.298 -23.506 33.873 1.00 88.95 C ATOM 261 O LYS 32 -49.555 -23.762 32.926 1.00 88.95 O ATOM 262 N THR 33 -51.605 -23.245 33.713 1.00 31.44 N ATOM 263 CA THR 33 -52.215 -23.349 32.426 1.00 31.44 C ATOM 264 CB THR 33 -53.692 -23.121 32.484 1.00 31.44 C ATOM 265 OG1 THR 33 -54.277 -24.046 33.389 1.00 31.44 O ATOM 266 CG2 THR 33 -54.275 -23.337 31.079 1.00 31.44 C ATOM 267 C THR 33 -51.588 -22.333 31.529 1.00 31.44 C ATOM 268 O THR 33 -51.354 -22.602 30.352 1.00 31.44 O ATOM 269 N LYS 34 -51.297 -21.138 32.076 1.00130.55 N ATOM 270 CA LYS 34 -50.671 -20.089 31.321 1.00130.55 C ATOM 271 CB LYS 34 -50.457 -18.807 32.144 1.00130.55 C ATOM 272 CG LYS 34 -49.743 -17.687 31.382 1.00130.55 C ATOM 273 CD LYS 34 -50.538 -17.093 30.218 1.00130.55 C ATOM 274 CE LYS 34 -49.866 -15.865 29.600 1.00130.55 C ATOM 275 NZ LYS 34 -49.927 -14.724 30.544 1.00130.55 N ATOM 276 C LYS 34 -49.326 -20.578 30.891 1.00130.55 C ATOM 277 O LYS 34 -48.878 -20.300 29.779 1.00130.55 O ATOM 278 N LYS 35 -48.652 -21.345 31.768 1.00 56.15 N ATOM 279 CA LYS 35 -47.345 -21.840 31.451 1.00 56.15 C ATOM 280 CB LYS 35 -46.760 -22.727 32.572 1.00 56.15 C ATOM 281 CG LYS 35 -46.505 -21.951 33.869 1.00 56.15 C ATOM 282 CD LYS 35 -46.217 -22.833 35.086 1.00 56.15 C ATOM 283 CE LYS 35 -46.220 -22.077 36.420 1.00 56.15 C ATOM 284 NZ LYS 35 -44.909 -21.431 36.659 1.00 56.15 N ATOM 285 C LYS 35 -47.484 -22.660 30.207 1.00 56.15 C ATOM 286 O LYS 35 -46.620 -22.628 29.332 1.00 56.15 O ATOM 287 N TYR 36 -48.599 -23.403 30.090 1.00 81.76 N ATOM 288 CA TYR 36 -48.810 -24.229 28.938 1.00 81.76 C ATOM 289 CB TYR 36 -50.061 -25.123 29.013 1.00 81.76 C ATOM 290 CG TYR 36 -49.834 -26.092 30.119 1.00 81.76 C ATOM 291 CD1 TYR 36 -48.624 -26.738 30.225 1.00 81.76 C ATOM 292 CD2 TYR 36 -50.794 -26.313 31.079 1.00 81.76 C ATOM 293 CE1 TYR 36 -48.388 -27.630 31.245 1.00 81.76 C ATOM 294 CE2 TYR 36 -50.566 -27.206 32.099 1.00 81.76 C ATOM 295 CZ TYR 36 -49.366 -27.868 32.183 1.00 81.76 C ATOM 296 OH TYR 36 -49.145 -28.781 33.237 1.00 81.76 O ATOM 297 C TYR 36 -48.927 -23.380 27.710 1.00 81.76 C ATOM 298 O TYR 36 -48.379 -23.725 26.666 1.00 81.76 O ATOM 299 N TRP 37 -49.632 -22.237 27.798 1.00 78.84 N ATOM 300 CA TRP 37 -49.825 -21.422 26.631 1.00 78.84 C ATOM 301 CB TRP 37 -50.746 -20.205 26.880 1.00 78.84 C ATOM 302 CG TRP 37 -52.218 -20.559 26.910 1.00 78.84 C ATOM 303 CD2 TRP 37 -53.295 -19.629 27.138 1.00 78.84 C ATOM 304 CD1 TRP 37 -52.806 -21.770 26.685 1.00 78.84 C ATOM 305 NE1 TRP 37 -54.174 -21.652 26.744 1.00 78.84 N ATOM 306 CE2 TRP 37 -54.489 -20.342 27.026 1.00 78.84 C ATOM 307 CE3 TRP 37 -53.293 -18.287 27.407 1.00 78.84 C ATOM 308 CZ2 TRP 37 -55.698 -19.724 27.178 1.00 78.84 C ATOM 309 CZ3 TRP 37 -54.515 -17.673 27.576 1.00 78.84 C ATOM 310 CH2 TRP 37 -55.696 -18.380 27.463 1.00 78.84 C ATOM 311 C TRP 37 -48.504 -20.962 26.090 1.00 78.84 C ATOM 312 O TRP 37 -48.281 -21.004 24.881 1.00 78.84 O ATOM 313 N VAL 38 -47.576 -20.524 26.959 1.00 36.90 N ATOM 314 CA VAL 38 -46.303 -20.076 26.472 1.00 36.90 C ATOM 315 CB VAL 38 -45.418 -19.531 27.555 1.00 36.90 C ATOM 316 CG1 VAL 38 -44.036 -19.253 26.947 1.00 36.90 C ATOM 317 CG2 VAL 38 -46.079 -18.266 28.136 1.00 36.90 C ATOM 318 C VAL 38 -45.611 -21.233 25.812 1.00 36.90 C ATOM 319 O VAL 38 -44.938 -21.071 24.794 1.00 36.90 O ATOM 320 N TYR 39 -45.775 -22.444 26.382 1.00 97.05 N ATOM 321 CA TYR 39 -45.149 -23.625 25.855 1.00 97.05 C ATOM 322 CB TYR 39 -45.460 -24.896 26.670 1.00 97.05 C ATOM 323 CG TYR 39 -44.804 -26.057 25.998 1.00 97.05 C ATOM 324 CD1 TYR 39 -43.439 -26.221 26.070 1.00 97.05 C ATOM 325 CD2 TYR 39 -45.548 -26.983 25.304 1.00 97.05 C ATOM 326 CE1 TYR 39 -42.833 -27.297 25.462 1.00 97.05 C ATOM 327 CE2 TYR 39 -44.947 -28.061 24.693 1.00 97.05 C ATOM 328 CZ TYR 39 -43.583 -28.215 24.763 1.00 97.05 C ATOM 329 OH TYR 39 -42.968 -29.321 24.137 1.00 97.05 O ATOM 330 C TYR 39 -45.663 -23.856 24.472 1.00 97.05 C ATOM 331 O TYR 39 -44.901 -24.198 23.568 1.00 97.05 O ATOM 332 N GLN 40 -46.978 -23.653 24.275 1.00131.56 N ATOM 333 CA GLN 40 -47.585 -23.887 23.001 1.00131.56 C ATOM 334 CB GLN 40 -49.088 -23.540 22.985 1.00131.56 C ATOM 335 CG GLN 40 -49.749 -23.671 21.608 1.00131.56 C ATOM 336 CD GLN 40 -49.721 -25.131 21.176 1.00131.56 C ATOM 337 OE1 GLN 40 -49.755 -25.444 19.985 1.00131.56 O ATOM 338 NE2 GLN 40 -49.648 -26.060 22.168 1.00131.56 N ATOM 339 C GLN 40 -46.916 -23.008 22.004 1.00131.56 C ATOM 340 O GLN 40 -46.651 -23.431 20.881 1.00131.56 O ATOM 341 N GLY 41 -46.612 -21.755 22.388 1.00 91.08 N ATOM 342 CA GLY 41 -45.988 -20.884 21.440 1.00 91.08 C ATOM 343 C GLY 41 -44.677 -21.486 21.055 1.00 91.08 C ATOM 344 O GLY 41 -44.349 -21.558 19.872 1.00 91.08 O ATOM 345 N LYS 42 -43.876 -21.930 22.044 1.00138.19 N ATOM 346 CA LYS 42 -42.647 -22.558 21.656 1.00138.19 C ATOM 347 CB LYS 42 -41.426 -21.631 21.581 1.00138.19 C ATOM 348 CG LYS 42 -41.427 -20.635 20.425 1.00138.19 C ATOM 349 CD LYS 42 -40.190 -19.741 20.457 1.00138.19 C ATOM 350 CE LYS 42 -38.892 -20.532 20.275 1.00138.19 C ATOM 351 NZ LYS 42 -38.782 -21.003 18.876 1.00138.19 N ATOM 352 C LYS 42 -42.274 -23.599 22.657 1.00138.19 C ATOM 353 O LYS 42 -42.057 -23.323 23.838 1.00138.19 O ATOM 354 N PRO 43 -42.151 -24.800 22.180 1.00 71.18 N ATOM 355 CA PRO 43 -41.727 -25.879 23.025 1.00 71.18 C ATOM 356 CD PRO 43 -42.928 -25.258 21.039 1.00 71.18 C ATOM 357 CB PRO 43 -41.926 -27.147 22.192 1.00 71.18 C ATOM 358 CG PRO 43 -43.060 -26.781 21.216 1.00 71.18 C ATOM 359 C PRO 43 -40.300 -25.631 23.404 1.00 71.18 C ATOM 360 O PRO 43 -39.809 -26.239 24.353 1.00 71.18 O ATOM 361 N VAL 44 -39.624 -24.733 22.665 1.00 56.73 N ATOM 362 CA VAL 44 -38.234 -24.439 22.845 1.00 56.73 C ATOM 363 CB VAL 44 -37.736 -23.415 21.862 1.00 56.73 C ATOM 364 CG1 VAL 44 -36.319 -22.989 22.275 1.00 56.73 C ATOM 365 CG2 VAL 44 -37.805 -24.011 20.444 1.00 56.73 C ATOM 366 C VAL 44 -37.982 -23.891 24.209 1.00 56.73 C ATOM 367 O VAL 44 -36.940 -24.185 24.797 1.00 56.73 O ATOM 368 N MET 45 -38.911 -23.077 24.752 1.00119.24 N ATOM 369 CA MET 45 -38.591 -22.447 25.999 1.00119.24 C ATOM 370 CB MET 45 -39.655 -21.475 26.534 1.00119.24 C ATOM 371 CG MET 45 -39.134 -20.687 27.740 1.00119.24 C ATOM 372 SD MET 45 -40.370 -19.690 28.623 1.00119.24 S ATOM 373 CE MET 45 -41.042 -21.093 29.559 1.00119.24 C ATOM 374 C MET 45 -38.341 -23.487 27.038 1.00119.24 C ATOM 375 O MET 45 -37.343 -23.387 27.745 1.00119.24 O ATOM 376 N PRO 46 -39.180 -24.468 27.221 1.00232.16 N ATOM 377 CA PRO 46 -38.712 -25.467 28.129 1.00232.16 C ATOM 378 CD PRO 46 -40.601 -24.206 27.407 1.00232.16 C ATOM 379 CB PRO 46 -39.947 -26.114 28.751 1.00232.16 C ATOM 380 CG PRO 46 -41.013 -25.011 28.651 1.00232.16 C ATOM 381 C PRO 46 -37.831 -26.402 27.364 1.00232.16 C ATOM 382 O PRO 46 -38.344 -27.178 26.562 1.00232.16 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 85.07 50.0 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 89.30 47.1 34 100.0 34 ARMSMC SURFACE . . . . . . . . 81.55 48.2 56 100.0 56 ARMSMC BURIED . . . . . . . . 99.87 58.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.48 46.9 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 83.40 44.8 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 94.33 29.4 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 86.75 40.7 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 43.11 80.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.80 36.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 59.90 42.9 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 74.23 30.8 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 76.68 40.9 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 77.70 0.0 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.22 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 82.17 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 71.80 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 91.22 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.56 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 92.56 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 92.46 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 92.56 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.44 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.44 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.1841 CRMSCA SECONDARY STRUCTURE . . 5.81 17 100.0 17 CRMSCA SURFACE . . . . . . . . 6.39 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.68 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.50 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 5.88 85 100.0 85 CRMSMC SURFACE . . . . . . . . 6.47 143 100.0 143 CRMSMC BURIED . . . . . . . . 6.64 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.13 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 9.02 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 9.58 84 100.0 84 CRMSSC SURFACE . . . . . . . . 9.25 127 100.0 127 CRMSSC BURIED . . . . . . . . 8.55 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.93 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 8.04 152 100.0 152 CRMSALL SURFACE . . . . . . . . 8.00 243 100.0 243 CRMSALL BURIED . . . . . . . . 7.59 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 122.856 0.888 0.897 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 124.095 0.907 0.912 17 100.0 17 ERRCA SURFACE . . . . . . . . 128.561 0.899 0.906 29 100.0 29 ERRCA BURIED . . . . . . . . 95.280 0.833 0.851 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 123.163 0.886 0.895 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 124.050 0.904 0.910 85 100.0 85 ERRMC SURFACE . . . . . . . . 129.011 0.898 0.905 143 100.0 143 ERRMC BURIED . . . . . . . . 95.284 0.829 0.848 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 125.778 0.857 0.869 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 122.576 0.857 0.869 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 113.546 0.845 0.859 84 100.0 84 ERRSC SURFACE . . . . . . . . 127.504 0.865 0.876 127 100.0 127 ERRSC BURIED . . . . . . . . 118.218 0.822 0.841 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 124.454 0.872 0.883 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 118.388 0.874 0.884 152 100.0 152 ERRALL SURFACE . . . . . . . . 128.043 0.881 0.890 243 100.0 243 ERRALL BURIED . . . . . . . . 107.998 0.829 0.847 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 1 4 15 32 35 35 DISTCA CA (P) 2.86 2.86 11.43 42.86 91.43 35 DISTCA CA (RMS) 0.63 0.63 2.45 3.92 5.76 DISTCA ALL (N) 1 7 21 86 234 296 296 DISTALL ALL (P) 0.34 2.36 7.09 29.05 79.05 296 DISTALL ALL (RMS) 0.63 1.59 2.38 3.84 6.24 DISTALL END of the results output