####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS435_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS435_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 14 - 37 4.78 10.33 LONGEST_CONTINUOUS_SEGMENT: 24 15 - 38 4.51 9.75 LONGEST_CONTINUOUS_SEGMENT: 24 16 - 39 4.91 9.14 LCS_AVERAGE: 63.84 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 13 - 28 1.32 11.56 LONGEST_CONTINUOUS_SEGMENT: 16 14 - 29 1.98 10.65 LCS_AVERAGE: 32.16 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 13 - 26 1.00 11.86 LONGEST_CONTINUOUS_SEGMENT: 14 15 - 28 0.94 10.45 LCS_AVERAGE: 24.73 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 5 20 0 3 3 4 4 5 6 6 6 16 18 18 18 19 19 20 20 20 22 23 LCS_GDT F 13 F 13 14 16 20 3 5 13 14 15 16 16 16 17 18 19 19 19 19 23 24 24 25 25 26 LCS_GDT H 14 H 14 14 16 24 3 4 12 14 15 16 16 16 17 18 19 19 19 21 23 24 24 25 25 26 LCS_GDT Y 15 Y 15 14 16 24 8 12 13 14 15 16 16 17 17 18 19 20 22 22 23 24 24 26 30 32 LCS_GDT T 16 T 16 14 16 24 10 12 13 14 15 16 16 17 17 18 21 21 22 22 23 24 27 30 30 32 LCS_GDT V 17 V 17 14 16 24 10 12 13 14 15 16 16 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT T 18 T 18 14 16 24 10 12 13 14 15 16 16 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT D 19 D 19 14 16 24 10 12 13 14 15 16 16 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT I 20 I 20 14 16 24 10 12 13 14 15 16 16 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT K 21 K 21 14 16 24 10 12 13 14 15 16 16 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT D 22 D 22 14 16 24 10 12 13 14 15 16 16 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT L 23 L 23 14 16 24 10 12 13 14 15 16 16 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT T 24 T 24 14 16 24 10 12 13 14 15 16 16 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT K 25 K 25 14 16 24 10 12 13 14 15 16 16 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT L 26 L 26 14 16 24 3 12 13 14 15 16 16 17 18 20 21 21 22 23 24 26 28 30 30 32 LCS_GDT G 27 G 27 14 16 24 3 12 13 14 15 16 16 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT A 28 A 28 14 16 24 4 11 13 13 15 16 16 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT I 29 I 29 4 16 24 4 4 5 9 13 15 16 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT Y 30 Y 30 4 7 24 4 4 5 6 7 11 14 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT D 31 D 31 4 7 24 4 4 5 6 7 9 13 16 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT K 32 K 32 4 7 24 3 4 4 5 7 9 13 15 17 18 20 21 22 23 25 26 28 30 30 32 LCS_GDT T 33 T 33 4 8 24 3 4 6 6 9 9 13 15 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT K 34 K 34 4 8 24 3 4 6 6 9 11 14 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT K 35 K 35 4 8 24 3 3 4 5 8 9 11 16 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT Y 36 Y 36 4 8 24 3 4 6 6 9 10 14 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT W 37 W 37 4 8 24 3 4 6 10 13 15 16 17 18 20 21 21 22 23 25 26 28 30 30 32 LCS_GDT V 38 V 38 4 8 24 3 4 6 6 10 15 16 17 17 17 19 21 22 23 25 26 28 30 30 32 LCS_GDT Y 39 Y 39 4 8 24 3 4 6 6 9 9 10 11 14 16 18 19 21 23 25 26 28 30 30 32 LCS_GDT Q 40 Q 40 4 8 23 3 3 4 6 9 9 10 11 15 16 18 19 21 23 25 26 28 30 30 32 LCS_GDT G 41 G 41 3 7 23 3 3 3 3 6 7 10 11 12 15 17 19 21 22 25 26 28 30 30 32 LCS_GDT K 42 K 42 5 5 23 3 5 5 6 6 6 8 10 11 15 17 18 19 23 25 26 28 30 30 32 LCS_GDT P 43 P 43 5 5 13 3 5 5 5 5 6 7 8 8 12 13 17 18 21 23 23 25 26 30 32 LCS_GDT V 44 V 44 5 5 13 3 5 5 5 5 6 7 8 8 9 13 14 18 19 20 24 28 30 30 32 LCS_GDT M 45 M 45 5 5 13 3 5 5 5 5 6 7 8 14 16 17 20 22 23 25 26 28 30 30 32 LCS_GDT P 46 P 46 5 5 10 3 5 5 5 5 6 7 8 8 9 13 14 18 19 25 26 28 30 30 32 LCS_AVERAGE LCS_A: 40.24 ( 24.73 32.16 63.84 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 12 13 14 15 16 16 17 18 20 21 21 22 23 25 26 28 30 30 32 GDT PERCENT_AT 28.57 34.29 37.14 40.00 42.86 45.71 45.71 48.57 51.43 57.14 60.00 60.00 62.86 65.71 71.43 74.29 80.00 85.71 85.71 91.43 GDT RMS_LOCAL 0.30 0.45 0.63 0.87 1.04 1.32 1.32 2.14 3.09 3.48 3.66 3.66 3.93 4.42 5.19 5.34 5.70 6.08 6.08 6.52 GDT RMS_ALL_AT 10.66 10.77 11.03 11.71 11.98 11.56 11.56 9.25 9.78 10.12 10.12 10.12 10.11 9.19 9.48 9.47 9.06 8.82 8.82 8.60 # Checking swapping # possible swapping detected: D 22 D 22 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 14.727 0 0.170 1.507 21.042 0.000 0.000 LGA F 13 F 13 8.658 0 0.236 1.561 11.794 1.071 0.909 LGA H 14 H 14 7.525 0 0.074 0.090 10.414 17.976 8.476 LGA Y 15 Y 15 2.895 0 0.141 0.708 5.998 48.929 36.587 LGA T 16 T 16 0.853 0 0.026 1.039 2.856 88.214 80.748 LGA V 17 V 17 0.908 0 0.018 0.166 2.085 90.595 84.286 LGA T 18 T 18 1.178 0 0.054 1.052 3.100 88.214 78.367 LGA D 19 D 19 0.674 0 0.039 0.764 2.404 92.857 81.905 LGA I 20 I 20 1.425 0 0.034 1.279 4.372 81.548 77.143 LGA K 21 K 21 1.799 0 0.032 0.769 5.391 77.143 57.672 LGA D 22 D 22 0.876 0 0.092 1.079 3.613 92.857 81.310 LGA L 23 L 23 0.880 0 0.049 1.155 4.592 92.857 75.714 LGA T 24 T 24 1.362 0 0.062 0.064 2.150 83.690 77.891 LGA K 25 K 25 1.535 0 0.154 0.725 3.495 75.119 66.085 LGA L 26 L 26 1.172 0 0.543 0.546 5.478 77.619 59.167 LGA G 27 G 27 3.048 0 0.592 0.592 3.048 67.143 67.143 LGA A 28 A 28 0.456 0 0.092 0.137 1.772 81.786 80.000 LGA I 29 I 29 4.288 0 0.083 1.043 9.164 34.286 24.524 LGA Y 30 Y 30 8.509 0 0.081 0.288 16.191 4.048 1.587 LGA D 31 D 31 12.867 0 0.391 1.069 14.899 0.000 0.000 LGA K 32 K 32 16.798 0 0.085 1.328 20.543 0.000 0.000 LGA T 33 T 33 15.638 0 0.689 0.620 15.998 0.000 0.000 LGA K 34 K 34 12.291 0 0.526 0.776 12.854 0.000 0.053 LGA K 35 K 35 12.272 0 0.708 0.698 21.142 0.000 0.000 LGA Y 36 Y 36 8.405 0 0.168 1.383 14.192 13.452 4.722 LGA W 37 W 37 2.925 0 0.072 1.251 7.319 42.976 47.415 LGA V 38 V 38 4.126 0 0.049 0.174 6.583 33.095 36.803 LGA Y 39 Y 39 10.680 0 0.312 1.207 16.086 1.190 0.397 LGA Q 40 Q 40 13.707 0 0.506 1.301 18.874 0.000 0.000 LGA G 41 G 41 14.907 0 0.607 0.607 14.907 0.000 0.000 LGA K 42 K 42 13.590 0 0.576 0.797 15.065 0.000 0.000 LGA P 43 P 43 13.189 0 0.115 0.142 13.189 0.000 0.000 LGA V 44 V 44 14.086 0 0.063 1.029 17.345 0.000 0.000 LGA M 45 M 45 12.227 0 0.150 0.792 15.501 0.000 0.000 LGA P 46 P 46 14.125 0 0.108 0.123 15.465 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 8.245 8.163 9.383 36.762 32.254 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 17 2.14 49.286 45.284 0.760 LGA_LOCAL RMSD: 2.137 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.248 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 8.245 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.453017 * X + 0.124815 * Y + 0.882721 * Z + -81.109856 Y_new = -0.889132 * X + 0.008897 * Y + -0.457565 * Z + 38.110851 Z_new = -0.064964 * X + -0.992140 * Y + 0.106946 * Z + 57.021786 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.042019 0.065010 -1.463418 [DEG: -116.9991 3.7248 -83.8477 ] ZXZ: 1.092571 1.463645 -3.076207 [DEG: 62.5997 83.8607 -176.2537 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS435_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS435_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 17 2.14 45.284 8.24 REMARK ---------------------------------------------------------- MOLECULE T0548TS435_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 1o68 ATOM 87 N HIS 12 -33.142 -20.044 26.145 1.00190.93 N ATOM 88 CA HIS 12 -32.338 -19.788 27.291 1.00190.93 C ATOM 89 ND1 HIS 12 -32.544 -16.966 25.538 1.00190.93 N ATOM 90 CG HIS 12 -31.764 -17.477 26.553 1.00190.93 C ATOM 91 CB HIS 12 -32.303 -18.305 27.677 1.00190.93 C ATOM 92 NE2 HIS 12 -30.452 -16.349 25.104 1.00190.93 N ATOM 93 CD2 HIS 12 -30.490 -17.091 26.273 1.00190.93 C ATOM 94 CE1 HIS 12 -31.709 -16.302 24.701 1.00190.93 C ATOM 95 C HIS 12 -32.923 -20.564 28.409 1.00190.93 C ATOM 96 O HIS 12 -33.963 -20.205 28.962 1.00190.93 O ATOM 97 N PHE 13 -32.250 -21.670 28.764 1.00282.12 N ATOM 98 CA PHE 13 -32.740 -22.489 29.821 1.00282.12 C ATOM 99 CB PHE 13 -32.191 -23.925 29.754 1.00282.12 1 ATOM 100 CG PHE 13 -30.703 -23.878 29.744 1.00282.12 1 ATOM 101 CD1 PHE 13 -30.022 -23.405 28.645 1.00282.12 1 ATOM 102 CD2 PHE 13 -29.993 -24.333 30.831 1.00282.12 1 ATOM 103 CE1 PHE 13 -28.648 -23.367 28.637 1.00282.12 1 ATOM 104 CE2 PHE 13 -28.621 -24.300 30.828 1.00282.12 1 ATOM 105 CZ PHE 13 -27.950 -23.820 29.729 1.00282.12 1 ATOM 106 C PHE 13 -32.362 -21.820 31.097 1.00282.12 1 ATOM 107 O PHE 13 -31.327 -22.082 31.711 1.00282.12 1 ATOM 108 N HIS 14 -33.240 -20.889 31.499 1.00216.75 1 ATOM 109 CA HIS 14 -33.131 -20.132 32.701 1.00216.75 1 ATOM 110 ND1 HIS 14 -32.969 -16.893 33.951 1.00216.75 1 ATOM 111 CG HIS 14 -32.167 -17.986 33.703 1.00216.75 1 ATOM 112 CB HIS 14 -32.299 -18.854 32.490 1.00216.75 1 ATOM 113 NE2 HIS 14 -31.534 -17.026 35.645 1.00216.75 1 ATOM 114 CD2 HIS 14 -31.297 -18.053 34.747 1.00216.75 1 ATOM 115 CE1 HIS 14 -32.547 -16.356 35.122 1.00216.75 1 ATOM 116 C HIS 14 -34.530 -19.734 32.999 1.00216.75 1 ATOM 117 O HIS 14 -35.129 -18.957 32.258 1.00216.75 1 ATOM 118 N TYR 15 -35.106 -20.253 34.095 1.00104.26 1 ATOM 119 CA TYR 15 -36.478 -19.913 34.315 1.00104.26 1 ATOM 120 CB TYR 15 -37.310 -21.129 34.743 1.00104.26 1 ATOM 121 CG TYR 15 -37.155 -22.125 33.643 1.00104.26 1 ATOM 122 CD1 TYR 15 -36.114 -23.029 33.652 1.00104.26 1 ATOM 123 CD2 TYR 15 -38.030 -22.144 32.582 1.00104.26 1 ATOM 124 CE1 TYR 15 -35.959 -23.941 32.633 1.00104.26 1 ATOM 125 CE2 TYR 15 -37.879 -23.053 31.560 1.00104.26 1 ATOM 126 CZ TYR 15 -36.846 -23.958 31.584 1.00104.26 1 ATOM 127 OH TYR 15 -36.693 -24.894 30.537 1.00104.26 1 ATOM 128 C TYR 15 -36.474 -18.920 35.419 1.00104.26 1 ATOM 129 O TYR 15 -36.124 -19.245 36.552 1.00104.26 1 ATOM 130 N THR 16 -36.861 -17.666 35.103 1.00258.60 1 ATOM 131 CA THR 16 -36.887 -16.657 36.116 1.00258.60 1 ATOM 132 CB THR 16 -35.612 -15.869 36.186 1.00258.60 1 ATOM 133 OG1 THR 16 -35.616 -15.016 37.323 1.00258.60 1 ATOM 134 CG2 THR 16 -35.472 -15.047 34.897 1.00258.60 1 ATOM 135 C THR 16 -37.991 -15.700 35.816 1.00258.60 1 ATOM 136 O THR 16 -38.664 -15.800 34.789 1.00258.60 1 ATOM 137 N VAL 17 -38.204 -14.739 36.737 1.00 58.49 1 ATOM 138 CA VAL 17 -39.234 -13.751 36.607 1.00 58.49 1 ATOM 139 CB VAL 17 -39.280 -12.800 37.764 1.00 58.49 1 ATOM 140 CG1 VAL 17 -40.319 -11.712 37.451 1.00 58.49 1 ATOM 141 CG2 VAL 17 -39.554 -13.596 39.050 1.00 58.49 1 ATOM 142 C VAL 17 -38.960 -12.912 35.401 1.00 58.49 1 ATOM 143 O VAL 17 -39.850 -12.659 34.590 1.00 58.49 1 ATOM 144 N THR 18 -37.706 -12.463 35.234 1.00 92.52 1 ATOM 145 CA THR 18 -37.420 -11.602 34.128 1.00 92.52 1 ATOM 146 CB THR 18 -36.017 -11.058 34.121 1.00 92.52 1 ATOM 147 OG1 THR 18 -35.917 -9.996 33.184 1.00 92.52 1 ATOM 148 CG2 THR 18 -35.033 -12.181 33.750 1.00 92.52 1 ATOM 149 C THR 18 -37.629 -12.360 32.862 1.00 92.52 1 ATOM 150 O THR 18 -38.116 -11.810 31.876 1.00 92.52 1 ATOM 151 N ASP 19 -37.269 -13.655 32.853 1.00 74.43 1 ATOM 152 CA ASP 19 -37.371 -14.398 31.636 1.00 74.43 1 ATOM 153 CB ASP 19 -36.889 -15.852 31.786 1.00 74.43 1 ATOM 154 CG ASP 19 -36.652 -16.437 30.399 1.00 74.43 1 ATOM 155 OD1 ASP 19 -36.568 -15.643 29.424 1.00 74.43 1 ATOM 156 OD2 ASP 19 -36.551 -17.690 30.301 1.00 74.43 1 ATOM 157 C ASP 19 -38.805 -14.431 31.228 1.00 74.43 1 ATOM 158 O ASP 19 -39.135 -14.147 30.079 1.00 74.43 1 ATOM 159 N ILE 20 -39.708 -14.728 32.180 1.00101.42 1 ATOM 160 CA ILE 20 -41.098 -14.857 31.845 1.00101.42 1 ATOM 161 CB ILE 20 -41.972 -15.286 32.996 1.00101.42 1 ATOM 162 CG2 ILE 20 -41.449 -16.639 33.500 1.00101.42 1 ATOM 163 CG1 ILE 20 -42.045 -14.225 34.102 1.00101.42 1 ATOM 164 CD1 ILE 20 -43.133 -14.528 35.133 1.00101.42 1 ATOM 165 C ILE 20 -41.599 -13.535 31.369 1.00101.42 1 ATOM 166 O ILE 20 -42.359 -13.447 30.407 1.00101.42 1 ATOM 167 N LYS 21 -41.180 -12.465 32.060 1.00 72.70 1 ATOM 168 CA LYS 21 -41.607 -11.128 31.774 1.00 72.70 1 ATOM 169 CB LYS 21 -40.993 -10.144 32.784 1.00 72.70 1 ATOM 170 CG LYS 21 -41.668 -8.778 32.877 1.00 72.70 1 ATOM 171 CD LYS 21 -41.231 -8.001 34.122 1.00 72.70 1 ATOM 172 CE LYS 21 -42.037 -6.730 34.386 1.00 72.70 1 ATOM 173 NZ LYS 21 -41.600 -6.120 35.663 1.00 72.70 1 ATOM 174 C LYS 21 -41.141 -10.752 30.401 1.00 72.70 1 ATOM 175 O LYS 21 -41.877 -10.151 29.617 1.00 72.70 1 ATOM 176 N ASP 22 -39.888 -11.116 30.073 1.00 83.54 1 ATOM 177 CA ASP 22 -39.296 -10.758 28.815 1.00 83.54 1 ATOM 178 CB ASP 22 -37.832 -11.240 28.715 1.00 83.54 1 ATOM 179 CG ASP 22 -37.168 -10.627 27.490 1.00 83.54 1 ATOM 180 OD1 ASP 22 -37.601 -10.945 26.351 1.00 83.54 1 ATOM 181 OD2 ASP 22 -36.216 -9.822 27.681 1.00 83.54 1 ATOM 182 C ASP 22 -40.085 -11.381 27.708 1.00 83.54 1 ATOM 183 O ASP 22 -40.434 -10.706 26.738 1.00 83.54 1 ATOM 184 N LEU 23 -40.417 -12.681 27.834 1.00106.77 1 ATOM 185 CA LEU 23 -41.145 -13.333 26.784 1.00106.77 1 ATOM 186 CB LEU 23 -41.309 -14.858 26.963 1.00106.77 1 ATOM 187 CG LEU 23 -40.036 -15.685 26.679 1.00106.77 1 ATOM 188 CD1 LEU 23 -39.625 -15.595 25.200 1.00106.77 1 ATOM 189 CD2 LEU 23 -38.887 -15.316 27.622 1.00106.77 1 ATOM 190 C LEU 23 -42.508 -12.740 26.656 1.00106.77 1 ATOM 191 O LEU 23 -43.005 -12.549 25.548 1.00106.77 1 ATOM 192 N THR 24 -43.159 -12.416 27.785 1.00 52.88 1 ATOM 193 CA THR 24 -44.492 -11.911 27.672 1.00 52.88 1 ATOM 194 CB THR 24 -45.129 -11.644 29.002 1.00 52.88 1 ATOM 195 OG1 THR 24 -44.406 -10.649 29.710 1.00 52.88 1 ATOM 196 CG2 THR 24 -45.138 -12.962 29.798 1.00 52.88 1 ATOM 197 C THR 24 -44.467 -10.643 26.877 1.00 52.88 1 ATOM 198 O THR 24 -45.264 -10.474 25.955 1.00 52.88 1 ATOM 199 N LYS 25 -43.529 -9.724 27.176 1.00123.02 2 ATOM 200 CA LYS 25 -43.554 -8.487 26.451 1.00123.02 2 ATOM 201 CB LYS 25 -42.490 -7.472 26.917 1.00123.02 2 ATOM 202 CG LYS 25 -42.662 -7.069 28.384 1.00123.02 2 ATOM 203 CD LYS 25 -41.605 -6.088 28.898 1.00123.02 2 ATOM 204 CE LYS 25 -40.239 -6.231 28.227 1.00123.02 2 ATOM 205 NZ LYS 25 -40.269 -5.534 26.923 1.00123.02 2 ATOM 206 C LYS 25 -43.336 -8.757 24.997 1.00123.02 2 ATOM 207 O LYS 25 -44.102 -8.288 24.157 1.00123.02 2 ATOM 208 N LEU 26 -42.304 -9.543 24.638 1.00255.75 2 ATOM 209 CA LEU 26 -42.121 -9.752 23.231 1.00255.75 2 ATOM 210 CB LEU 26 -40.772 -9.225 22.716 1.00255.75 2 ATOM 211 CG LEU 26 -40.545 -9.436 21.204 1.00255.75 2 ATOM 212 CD1 LEU 26 -41.547 -8.640 20.358 1.00255.75 2 ATOM 213 CD2 LEU 26 -39.087 -9.145 20.814 1.00255.75 2 ATOM 214 C LEU 26 -42.156 -11.216 22.958 1.00255.75 2 ATOM 215 O LEU 26 -41.144 -11.909 23.058 1.00255.75 2 ATOM 216 N GLY 27 -43.324 -11.736 22.550 1.00 79.37 2 ATOM 217 CA GLY 27 -43.327 -13.143 22.313 1.00 79.37 2 ATOM 218 C GLY 27 -44.693 -13.664 22.563 1.00 79.37 2 ATOM 219 O GLY 27 -45.617 -13.431 21.785 1.00 79.37 2 ATOM 220 N ALA 28 -44.842 -14.416 23.667 1.00 88.10 2 ATOM 221 CA ALA 28 -46.110 -15.008 23.941 1.00 88.10 2 ATOM 222 CB ALA 28 -46.147 -15.793 25.260 1.00 88.10 2 ATOM 223 C ALA 28 -47.104 -13.907 24.039 1.00 88.10 2 ATOM 224 O ALA 28 -46.868 -12.888 24.685 1.00 88.10 2 ATOM 225 N ILE 29 -48.252 -14.082 23.364 1.00265.53 2 ATOM 226 CA ILE 29 -49.232 -13.045 23.382 1.00265.53 2 ATOM 227 CB ILE 29 -49.150 -12.184 22.155 1.00265.53 2 ATOM 228 CG2 ILE 29 -50.186 -11.057 22.285 1.00265.53 2 ATOM 229 CG1 ILE 29 -47.714 -11.653 21.983 1.00265.53 2 ATOM 230 CD1 ILE 29 -47.452 -11.036 20.611 1.00265.53 2 ATOM 231 C ILE 29 -50.561 -13.725 23.393 1.00265.53 2 ATOM 232 O ILE 29 -50.651 -14.922 23.130 1.00265.53 2 ATOM 233 N TYR 30 -51.627 -12.987 23.753 1.00262.95 2 ATOM 234 CA TYR 30 -52.931 -13.570 23.700 1.00262.95 2 ATOM 235 CB TYR 30 -53.741 -13.365 24.994 1.00262.95 2 ATOM 236 CG TYR 30 -55.056 -14.028 24.790 1.00262.95 2 ATOM 237 CD1 TYR 30 -55.159 -15.399 24.865 1.00262.95 2 ATOM 238 CD2 TYR 30 -56.185 -13.284 24.533 1.00262.95 2 ATOM 239 CE1 TYR 30 -56.369 -16.024 24.673 1.00262.95 2 ATOM 240 CE2 TYR 30 -57.398 -13.902 24.342 1.00262.95 2 ATOM 241 CZ TYR 30 -57.488 -15.272 24.412 1.00262.95 2 ATOM 242 OH TYR 30 -58.731 -15.903 24.214 1.00262.95 2 ATOM 243 C TYR 30 -53.638 -12.884 22.577 1.00262.95 2 ATOM 244 O TYR 30 -54.051 -11.732 22.693 1.00262.95 2 ATOM 245 N ASP 31 -53.756 -13.583 21.434 1.00144.72 2 ATOM 246 CA ASP 31 -54.389 -13.018 20.281 1.00144.72 2 ATOM 247 CB ASP 31 -53.554 -13.159 18.996 1.00144.72 2 ATOM 248 CG ASP 31 -52.300 -12.310 19.156 1.00144.72 2 ATOM 249 OD1 ASP 31 -52.068 -11.791 20.282 1.00144.72 2 ATOM 250 OD2 ASP 31 -51.552 -12.173 18.151 1.00144.72 2 ATOM 251 C ASP 31 -55.660 -13.764 20.065 1.00144.72 2 ATOM 252 O ASP 31 -56.250 -14.299 21.002 1.00144.72 2 ATOM 253 N LYS 32 -56.118 -13.807 18.800 1.00107.91 2 ATOM 254 CA LYS 32 -57.300 -14.552 18.505 1.00107.91 2 ATOM 255 CB LYS 32 -57.634 -14.592 17.005 1.00107.91 2 ATOM 256 CG LYS 32 -58.002 -13.234 16.407 1.00107.91 2 ATOM 257 CD LYS 32 -58.156 -13.274 14.887 1.00107.91 2 ATOM 258 CE LYS 32 -59.520 -13.792 14.431 1.00107.91 2 ATOM 259 NZ LYS 32 -59.664 -15.226 14.778 1.00107.91 2 ATOM 260 C LYS 32 -56.966 -15.944 18.913 1.00107.91 2 ATOM 261 O LYS 32 -57.770 -16.639 19.533 1.00107.91 2 ATOM 262 N THR 33 -55.735 -16.373 18.584 1.00168.84 2 ATOM 263 CA THR 33 -55.308 -17.674 18.989 1.00168.84 2 ATOM 264 CB THR 33 -53.953 -18.039 18.452 1.00168.84 2 ATOM 265 OG1 THR 33 -53.963 -17.998 17.033 1.00168.84 2 ATOM 266 CG2 THR 33 -53.575 -19.444 18.945 1.00168.84 2 ATOM 267 C THR 33 -55.201 -17.583 20.471 1.00168.84 2 ATOM 268 O THR 33 -54.825 -16.544 21.009 1.00168.84 2 ATOM 269 N LYS 34 -55.552 -18.663 21.188 1.00230.97 2 ATOM 270 CA LYS 34 -55.473 -18.565 22.612 1.00230.97 2 ATOM 271 CB LYS 34 -56.481 -19.479 23.338 1.00230.97 2 ATOM 272 CG LYS 34 -56.411 -19.390 24.865 1.00230.97 2 ATOM 273 CD LYS 34 -57.580 -20.066 25.587 1.00230.97 2 ATOM 274 CE LYS 34 -58.821 -19.181 25.722 1.00230.97 2 ATOM 275 NZ LYS 34 -58.546 -18.063 26.653 1.00230.97 2 ATOM 276 C LYS 34 -54.102 -18.982 23.032 1.00230.97 2 ATOM 277 O LYS 34 -53.844 -20.166 23.243 1.00230.97 2 ATOM 278 N LYS 35 -53.176 -18.012 23.161 1.00223.18 2 ATOM 279 CA LYS 35 -51.872 -18.351 23.642 1.00223.18 2 ATOM 280 CB LYS 35 -50.711 -18.287 22.627 1.00223.18 2 ATOM 281 CG LYS 35 -50.575 -19.547 21.766 1.00223.18 2 ATOM 282 CD LYS 35 -49.367 -19.539 20.827 1.00223.18 2 ATOM 283 CE LYS 35 -49.640 -19.071 19.400 1.00223.18 2 ATOM 284 NZ LYS 35 -48.396 -19.186 18.606 1.00223.18 2 ATOM 285 C LYS 35 -51.526 -17.419 24.753 1.00223.18 2 ATOM 286 O LYS 35 -52.067 -16.321 24.865 1.00223.18 2 ATOM 287 N TYR 36 -50.614 -17.883 25.623 1.00155.86 2 ATOM 288 CA TYR 36 -50.114 -17.161 26.753 1.00155.86 2 ATOM 289 CB TYR 36 -50.670 -17.631 28.108 1.00155.86 2 ATOM 290 CG TYR 36 -52.102 -17.258 28.240 1.00155.86 2 ATOM 291 CD1 TYR 36 -53.063 -17.880 27.476 1.00155.86 2 ATOM 292 CD2 TYR 36 -52.480 -16.308 29.158 1.00155.86 2 ATOM 293 CE1 TYR 36 -54.386 -17.532 27.610 1.00155.86 2 ATOM 294 CE2 TYR 36 -53.800 -15.958 29.297 1.00155.86 2 ATOM 295 CZ TYR 36 -54.752 -16.571 28.523 1.00155.86 2 ATOM 296 OH TYR 36 -56.108 -16.210 28.667 1.00155.86 2 ATOM 297 C TYR 36 -48.686 -17.544 26.822 1.00155.86 2 ATOM 298 O TYR 36 -48.166 -18.218 25.934 1.00155.86 2 ATOM 299 N TRP 37 -47.987 -17.083 27.868 1.00183.65 3 ATOM 300 CA TRP 37 -46.675 -17.616 27.989 1.00183.65 3 ATOM 301 CB TRP 37 -45.713 -16.800 28.858 1.00183.65 3 ATOM 302 CG TRP 37 -44.401 -17.512 29.064 1.00183.65 3 ATOM 303 CD2 TRP 37 -43.469 -17.809 28.012 1.00183.65 3 ATOM 304 CD1 TRP 37 -43.891 -18.060 30.202 1.00183.65 3 ATOM 305 NE1 TRP 37 -42.689 -18.668 29.931 1.00183.65 3 ATOM 306 CE2 TRP 37 -42.420 -18.526 28.585 1.00183.65 3 ATOM 307 CE3 TRP 37 -43.491 -17.523 26.677 1.00183.65 3 ATOM 308 CZ2 TRP 37 -41.373 -18.969 27.827 1.00183.65 3 ATOM 309 CZ3 TRP 37 -42.426 -17.957 25.919 1.00183.65 3 ATOM 310 CH2 TRP 37 -41.386 -18.669 26.483 1.00183.65 3 ATOM 311 C TRP 37 -46.868 -18.972 28.569 1.00183.65 3 ATOM 312 O TRP 37 -47.707 -19.174 29.446 1.00183.65 3 ATOM 313 N VAL 38 -46.100 -19.952 28.073 1.00 76.66 3 ATOM 314 CA VAL 38 -46.330 -21.288 28.513 1.00 76.66 3 ATOM 315 CB VAL 38 -46.340 -22.261 27.369 1.00 76.66 3 ATOM 316 CG1 VAL 38 -46.448 -23.688 27.924 1.00 76.66 3 ATOM 317 CG2 VAL 38 -47.467 -21.865 26.400 1.00 76.66 3 ATOM 318 C VAL 38 -45.227 -21.692 29.421 1.00 76.66 3 ATOM 319 O VAL 38 -44.049 -21.549 29.101 1.00 76.66 3 ATOM 320 N TYR 39 -45.585 -22.189 30.618 1.00149.81 3 ATOM 321 CA TYR 39 -44.535 -22.731 31.412 1.00149.81 3 ATOM 322 CB TYR 39 -44.689 -22.510 32.922 1.00149.81 3 ATOM 323 CG TYR 39 -44.906 -21.067 33.200 1.00149.81 3 ATOM 324 CD1 TYR 39 -46.175 -20.548 33.104 1.00149.81 3 ATOM 325 CD2 TYR 39 -43.866 -20.237 33.562 1.00149.81 3 ATOM 326 CE1 TYR 39 -46.412 -19.222 33.373 1.00149.81 3 ATOM 327 CE2 TYR 39 -44.100 -18.910 33.831 1.00149.81 3 ATOM 328 CZ TYR 39 -45.373 -18.400 33.730 1.00149.81 3 ATOM 329 OH TYR 39 -45.617 -17.038 34.006 1.00149.81 3 ATOM 330 C TYR 39 -44.758 -24.184 31.240 1.00149.81 3 ATOM 331 O TYR 39 -45.026 -24.898 32.204 1.00149.81 3 ATOM 332 N GLN 40 -44.650 -24.662 29.992 1.00127.76 3 ATOM 333 CA GLN 40 -44.870 -26.052 29.786 1.00127.76 3 ATOM 334 CB GLN 40 -44.994 -26.458 28.304 1.00127.76 3 ATOM 335 CG GLN 40 -45.030 -27.973 28.057 1.00127.76 3 ATOM 336 CD GLN 40 -46.363 -28.541 28.526 1.00127.76 3 ATOM 337 OE1 GLN 40 -47.244 -27.821 28.993 1.00127.76 3 ATOM 338 NE2 GLN 40 -46.514 -29.887 28.393 1.00127.76 3 ATOM 339 C GLN 40 -43.679 -26.725 30.344 1.00127.76 3 ATOM 340 O GLN 40 -42.557 -26.236 30.229 1.00127.76 3 ATOM 341 N GLY 41 -43.917 -27.859 31.015 1.00141.92 3 ATOM 342 CA GLY 41 -42.830 -28.607 31.552 1.00141.92 3 ATOM 343 C GLY 41 -43.327 -30.000 31.661 1.00141.92 3 ATOM 344 O GLY 41 -44.414 -30.225 32.191 1.00141.92 3 ATOM 345 N LYS 42 -42.539 -30.977 31.170 1.00118.33 3 ATOM 346 CA LYS 42 -43.002 -32.321 31.295 1.00118.33 3 ATOM 347 CB LYS 42 -42.096 -33.363 30.615 1.00118.33 3 ATOM 348 CG LYS 42 -42.222 -33.317 29.094 1.00118.33 3 ATOM 349 CD LYS 42 -41.725 -32.001 28.495 1.00118.33 3 ATOM 350 CE LYS 42 -42.397 -31.634 27.172 1.00118.33 3 ATOM 351 NZ LYS 42 -41.997 -32.583 26.109 1.00118.33 3 ATOM 352 C LYS 42 -43.085 -32.565 32.758 1.00118.33 3 ATOM 353 O LYS 42 -44.077 -33.109 33.240 1.00118.33 3 ATOM 354 N PRO 43 -42.086 -32.165 33.497 1.00142.10 3 ATOM 355 CA PRO 43 -42.255 -32.239 34.913 1.00142.10 3 ATOM 356 CD PRO 43 -40.699 -32.372 33.107 1.00142.10 3 ATOM 357 CB PRO 43 -40.858 -32.188 35.522 1.00142.10 3 ATOM 358 CG PRO 43 -39.959 -32.741 34.405 1.00142.10 3 ATOM 359 C PRO 43 -43.093 -31.042 35.178 1.00142.10 3 ATOM 360 O PRO 43 -43.030 -30.102 34.387 1.00142.10 3 ATOM 361 N VAL 44 -43.899 -31.031 36.247 1.00 84.77 3 ATOM 362 CA VAL 44 -44.671 -29.845 36.408 1.00 84.77 3 ATOM 363 CB VAL 44 -45.863 -30.005 37.300 1.00 84.77 3 ATOM 364 CG1 VAL 44 -45.362 -30.392 38.700 1.00 84.77 3 ATOM 365 CG2 VAL 44 -46.671 -28.698 37.267 1.00 84.77 3 ATOM 366 C VAL 44 -43.777 -28.819 37.014 1.00 84.77 3 ATOM 367 O VAL 44 -43.049 -29.094 37.968 1.00 84.77 3 ATOM 368 N MET 45 -43.797 -27.597 36.451 1.00143.99 3 ATOM 369 CA MET 45 -42.988 -26.584 37.046 1.00143.99 3 ATOM 370 CB MET 45 -42.977 -25.251 36.277 1.00143.99 3 ATOM 371 CG MET 45 -42.054 -24.190 36.884 1.00143.99 3 ATOM 372 SD MET 45 -41.936 -22.652 35.921 1.00143.99 3 ATOM 373 CE MET 45 -40.687 -21.905 37.010 1.00143.99 3 ATOM 374 C MET 45 -43.620 -26.361 38.371 1.00143.99 3 ATOM 375 O MET 45 -44.835 -26.492 38.512 1.00143.99 3 ATOM 376 N PRO 46 -42.845 -26.047 39.361 1.00137.56 3 ATOM 377 CA PRO 46 -43.461 -25.883 40.635 1.00137.56 3 ATOM 378 CD PRO 46 -41.493 -26.564 39.480 1.00137.56 3 ATOM 379 CB PRO 46 -42.323 -25.801 41.646 1.00137.56 3 ATOM 380 CG PRO 46 -41.234 -26.681 40.994 1.00137.56 3 ATOM 381 C PRO 46 -44.401 -24.738 40.582 1.00137.56 3 ATOM 382 O PRO 46 -44.075 -23.716 39.978 1.00137.56 3 TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 60.58 66.2 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 33.59 82.4 34 100.0 34 ARMSMC SURFACE . . . . . . . . 66.31 60.7 56 100.0 56 ARMSMC BURIED . . . . . . . . 16.71 91.7 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.10 46.9 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 81.42 44.8 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 84.23 41.2 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 81.57 44.4 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 71.62 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.34 56.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 66.98 57.1 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 64.10 69.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 52.95 63.6 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 135.52 0.0 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 79.09 25.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 84.29 14.3 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 69.15 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 79.09 25.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 103.31 16.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 103.31 16.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 110.68 0.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 103.31 16.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.24 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.24 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2356 CRMSCA SECONDARY STRUCTURE . . 5.16 17 100.0 17 CRMSCA SURFACE . . . . . . . . 8.65 29 100.0 29 CRMSCA BURIED . . . . . . . . 5.90 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.27 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 5.31 85 100.0 85 CRMSMC SURFACE . . . . . . . . 8.63 143 100.0 143 CRMSMC BURIED . . . . . . . . 6.22 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.40 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 9.55 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 7.73 84 100.0 84 CRMSSC SURFACE . . . . . . . . 11.05 127 100.0 127 CRMSSC BURIED . . . . . . . . 6.87 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.41 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 6.72 152 100.0 152 CRMSALL SURFACE . . . . . . . . 9.93 243 100.0 243 CRMSALL BURIED . . . . . . . . 6.55 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 138.778 0.901 0.906 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 128.408 0.925 0.928 17 100.0 17 ERRCA SURFACE . . . . . . . . 146.318 0.901 0.906 29 100.0 29 ERRCA BURIED . . . . . . . . 102.335 0.900 0.907 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 139.142 0.900 0.906 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 128.290 0.923 0.926 85 100.0 85 ERRMC SURFACE . . . . . . . . 146.933 0.901 0.906 143 100.0 143 ERRMC BURIED . . . . . . . . 102.004 0.895 0.902 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 149.041 0.884 0.892 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 150.446 0.890 0.897 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 139.943 0.900 0.906 84 100.0 84 ERRSC SURFACE . . . . . . . . 155.504 0.880 0.888 127 100.0 127 ERRSC BURIED . . . . . . . . 120.737 0.899 0.906 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 144.201 0.892 0.899 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 134.773 0.911 0.916 152 100.0 152 ERRALL SURFACE . . . . . . . . 151.171 0.891 0.897 243 100.0 243 ERRALL BURIED . . . . . . . . 112.242 0.897 0.904 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 2 5 13 27 35 35 DISTCA CA (P) 2.86 5.71 14.29 37.14 77.14 35 DISTCA CA (RMS) 0.50 1.45 1.99 3.46 6.14 DISTCA ALL (N) 6 13 34 84 218 296 296 DISTALL ALL (P) 2.03 4.39 11.49 28.38 73.65 296 DISTALL ALL (RMS) 0.67 1.25 2.08 3.47 6.58 DISTALL END of the results output