####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 30 ( 246), selected 30 , name T0548TS433_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 30 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS433_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 17 - 38 4.92 10.66 LCS_AVERAGE: 58.57 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 18 - 27 1.66 14.29 LCS_AVERAGE: 21.62 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 18 - 26 0.52 15.85 LCS_AVERAGE: 16.29 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 30 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 17 V 17 3 9 22 0 3 3 3 5 6 6 9 11 12 14 17 19 20 22 22 22 22 22 22 LCS_GDT T 18 T 18 9 10 22 7 9 9 9 9 9 13 14 15 15 17 18 19 20 22 23 23 25 26 26 LCS_GDT D 19 D 19 9 10 22 7 9 9 9 9 9 13 14 15 15 17 19 21 22 23 23 23 25 26 26 LCS_GDT I 20 I 20 9 10 22 7 9 9 9 9 9 13 14 15 15 17 19 21 22 23 23 23 25 26 26 LCS_GDT K 21 K 21 9 10 22 7 9 9 9 9 9 13 14 15 15 17 19 21 22 23 23 23 25 26 26 LCS_GDT D 22 D 22 9 10 22 7 9 9 9 9 9 13 14 15 15 17 19 21 22 23 23 23 25 26 26 LCS_GDT L 23 L 23 9 10 22 7 9 9 9 9 9 13 14 15 15 17 19 21 22 23 23 23 25 26 26 LCS_GDT T 24 T 24 9 10 22 7 9 9 9 9 9 13 14 15 15 17 19 21 22 23 23 23 25 26 26 LCS_GDT K 25 K 25 9 10 22 4 9 9 9 9 9 13 14 15 15 17 19 21 22 23 23 23 25 26 26 LCS_GDT L 26 L 26 9 10 22 4 9 9 9 9 9 13 14 15 15 17 18 19 22 23 23 23 25 26 26 LCS_GDT G 27 G 27 5 10 22 3 5 5 5 7 9 13 14 15 15 17 18 19 22 23 23 23 25 26 26 LCS_GDT A 28 A 28 5 6 22 3 5 5 5 7 9 13 14 15 15 17 19 21 22 23 23 23 25 26 26 LCS_GDT I 29 I 29 5 6 22 3 5 5 5 6 8 9 11 15 15 17 19 21 22 23 23 23 25 26 26 LCS_GDT Y 30 Y 30 3 6 22 3 3 3 4 7 8 10 14 15 15 17 19 21 22 23 23 23 25 26 26 LCS_GDT D 31 D 31 5 5 22 4 5 5 5 5 7 9 14 15 15 17 19 21 22 23 23 23 25 26 26 LCS_GDT K 32 K 32 5 5 22 4 5 5 5 5 7 9 11 12 14 17 19 21 22 23 23 23 25 26 26 LCS_GDT T 33 T 33 5 5 22 4 5 5 5 5 5 6 8 9 13 13 16 18 20 22 22 22 25 26 26 LCS_GDT K 34 K 34 5 7 22 4 5 5 6 7 7 7 8 9 12 16 19 21 22 23 23 23 25 26 26 LCS_GDT K 35 K 35 5 7 22 4 5 5 6 7 9 13 14 15 15 17 19 21 22 23 23 23 25 26 26 LCS_GDT Y 36 Y 36 5 7 22 3 4 5 6 7 8 13 14 15 15 17 19 21 22 23 23 23 25 26 26 LCS_GDT W 37 W 37 5 7 22 3 4 5 6 7 7 9 11 12 14 15 19 21 22 23 23 23 25 26 26 LCS_GDT V 38 V 38 5 7 22 3 4 5 6 7 8 9 11 12 15 16 19 21 22 23 23 23 25 26 26 LCS_GDT Y 39 Y 39 4 7 21 3 4 5 6 7 8 9 11 12 14 16 19 21 22 23 23 23 25 26 26 LCS_GDT Q 40 Q 40 3 7 16 3 4 5 6 7 8 9 11 12 14 16 19 21 22 23 23 23 25 26 26 LCS_GDT G 41 G 41 4 6 16 3 4 4 5 6 6 7 11 12 14 15 18 21 22 23 23 23 25 26 26 LCS_GDT K 42 K 42 4 6 16 3 4 4 6 7 8 9 11 12 14 16 19 21 22 23 23 23 25 26 26 LCS_GDT P 43 P 43 4 6 16 3 4 4 5 6 6 7 7 7 8 10 13 15 16 17 22 23 25 26 26 LCS_GDT V 44 V 44 4 6 16 3 4 4 5 6 6 7 7 7 8 11 13 15 16 17 17 17 18 18 20 LCS_GDT M 45 M 45 3 6 15 3 3 3 5 6 6 7 7 7 8 11 13 15 16 17 17 17 18 18 20 LCS_GDT P 46 P 46 3 6 15 3 3 3 5 5 6 7 7 7 8 10 13 15 15 16 17 17 18 18 18 LCS_AVERAGE LCS_A: 32.16 ( 16.29 21.62 58.57 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 9 9 9 9 9 13 14 15 15 17 19 21 22 23 23 23 25 26 26 GDT PERCENT_AT 20.00 25.71 25.71 25.71 25.71 25.71 37.14 40.00 42.86 42.86 48.57 54.29 60.00 62.86 65.71 65.71 65.71 71.43 74.29 74.29 GDT RMS_LOCAL 0.33 0.52 0.52 0.52 0.52 0.52 2.55 2.77 2.93 2.93 3.62 4.56 4.78 5.03 5.24 5.24 5.24 5.71 5.88 5.88 GDT RMS_ALL_AT 16.07 15.85 15.85 15.85 15.85 15.85 11.51 11.38 11.37 11.37 11.08 8.61 8.68 8.67 8.77 8.77 8.77 8.58 8.48 8.48 # Checking swapping # possible swapping detected: D 22 D 22 # possible swapping detected: Y 30 Y 30 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 17 V 17 8.428 0 0.593 0.673 12.955 9.167 5.306 LGA T 18 T 18 3.001 0 0.586 1.216 4.166 56.190 55.714 LGA D 19 D 19 2.972 0 0.104 1.222 7.031 60.952 41.488 LGA I 20 I 20 2.444 0 0.046 1.379 5.786 68.810 50.655 LGA K 21 K 21 1.590 0 0.016 1.066 5.563 81.548 64.921 LGA D 22 D 22 2.104 0 0.109 1.459 7.995 72.976 46.607 LGA L 23 L 23 3.319 0 0.097 0.847 9.001 57.262 35.298 LGA T 24 T 24 3.299 0 0.116 0.117 5.101 59.167 49.048 LGA K 25 K 25 1.522 0 0.121 0.729 5.152 77.143 56.402 LGA L 26 L 26 1.422 0 0.202 0.314 2.969 75.476 72.262 LGA G 27 G 27 3.025 0 0.291 0.291 3.025 63.095 63.095 LGA A 28 A 28 2.383 0 0.523 0.557 5.263 48.214 51.524 LGA I 29 I 29 7.234 0 0.640 1.681 12.220 20.952 10.536 LGA Y 30 Y 30 4.584 0 0.579 0.448 7.394 27.619 26.905 LGA D 31 D 31 4.748 0 0.582 0.811 5.864 31.548 28.274 LGA K 32 K 32 8.693 0 0.021 0.647 17.000 6.905 3.069 LGA T 33 T 33 10.222 0 0.052 0.633 14.382 2.738 1.565 LGA K 34 K 34 6.340 0 0.200 0.879 11.716 24.762 12.275 LGA K 35 K 35 2.118 0 0.205 0.284 12.618 61.429 32.593 LGA Y 36 Y 36 3.224 0 0.071 1.259 9.328 45.119 32.778 LGA W 37 W 37 8.595 0 0.292 1.366 16.626 5.476 1.565 LGA V 38 V 38 9.823 0 0.627 1.152 13.097 0.476 0.612 LGA Y 39 Y 39 14.982 0 0.067 1.379 24.124 0.000 0.000 LGA Q 40 Q 40 20.111 0 0.342 0.614 21.831 0.000 0.000 LGA G 41 G 41 22.971 0 0.292 0.292 22.971 0.000 0.000 LGA K 42 K 42 18.925 0 0.169 0.689 20.235 0.000 0.000 LGA P 43 P 43 18.591 0 0.179 0.423 18.760 0.000 0.000 LGA V 44 V 44 19.812 0 0.418 1.031 21.582 0.000 0.000 LGA M 45 M 45 21.021 0 0.071 0.762 22.763 0.000 0.000 LGA P 46 P 46 23.411 0 0.697 0.630 25.223 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 30 120 120 100.00 246 246 100.00 35 SUMMARY(RMSD_GDC): 7.990 7.932 8.485 27.344 21.214 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 30 35 4.0 14 2.77 39.286 34.327 0.487 LGA_LOCAL RMSD: 2.774 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.383 Number of assigned atoms: 30 Std_ASGN_ATOMS RMSD: 7.990 Standard rmsd on all 30 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.189761 * X + -0.634346 * Y + -0.749397 * Z + 8.792573 Y_new = -0.860191 * X + 0.475392 * Y + -0.184591 * Z + -5.009789 Z_new = 0.473352 * X + 0.609596 * Y + -0.635870 * Z + 23.704237 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.787923 -0.493092 2.377287 [DEG: -102.4404 -28.2521 136.2085 ] ZXZ: -1.329284 2.259932 0.660248 [DEG: -76.1624 129.4846 37.8294 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS433_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS433_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 30 35 4.0 14 2.77 34.327 7.99 REMARK ---------------------------------------------------------- MOLECULE T0548TS433_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 137 N VAL 17 -33.717 -15.531 29.115 1.00 99.99 N ATOM 138 CA VAL 17 -34.845 -14.605 29.303 1.00 99.99 C ATOM 139 C VAL 17 -35.772 -15.166 30.372 1.00 99.99 C ATOM 140 O VAL 17 -36.245 -16.295 30.263 1.00 99.99 O ATOM 141 CB VAL 17 -35.624 -14.348 28.017 1.00 99.99 C ATOM 142 CG1 VAL 17 -36.806 -13.413 28.252 1.00 99.99 C ATOM 143 CG2 VAL 17 -34.724 -13.878 26.878 1.00 99.99 C ATOM 144 N THR 18 -36.102 -14.372 31.393 1.00 99.99 N ATOM 145 CA THR 18 -37.095 -14.640 32.414 1.00 99.99 C ATOM 146 C THR 18 -38.482 -14.266 31.912 1.00 99.99 C ATOM 147 O THR 18 -38.618 -13.352 31.101 1.00 99.99 O ATOM 148 CB THR 18 -36.799 -13.874 33.701 1.00 99.99 C ATOM 149 OG1 THR 18 -36.545 -12.516 33.416 1.00 99.99 O ATOM 150 CG2 THR 18 -35.618 -14.440 34.483 1.00 99.99 C ATOM 151 N ASP 19 -39.506 -14.966 32.403 1.00 99.99 N ATOM 152 CA ASP 19 -40.859 -14.856 31.898 1.00 99.99 C ATOM 153 C ASP 19 -41.467 -13.461 31.931 1.00 99.99 C ATOM 154 O ASP 19 -42.248 -13.099 31.052 1.00 99.99 O ATOM 155 CB ASP 19 -41.765 -15.861 32.605 1.00 99.99 C ATOM 156 CG ASP 19 -42.123 -15.708 34.076 1.00 99.99 C ATOM 157 OD1 ASP 19 -41.575 -14.864 34.817 1.00 99.99 O ATOM 158 OD2 ASP 19 -43.029 -16.481 34.454 1.00 99.99 O ATOM 159 N ILE 20 -41.119 -12.613 32.903 1.00 99.99 N ATOM 160 CA ILE 20 -41.542 -11.240 33.085 1.00 99.99 C ATOM 161 C ILE 20 -40.909 -10.358 32.017 1.00 99.99 C ATOM 162 O ILE 20 -41.631 -9.575 31.403 1.00 99.99 O ATOM 163 CB ILE 20 -41.296 -10.728 34.501 1.00 99.99 C ATOM 164 CG1 ILE 20 -41.950 -9.390 34.833 1.00 99.99 C ATOM 165 CG2 ILE 20 -39.841 -10.776 34.959 1.00 99.99 C ATOM 166 CD1 ILE 20 -43.436 -9.301 34.494 1.00 99.99 C ATOM 167 N LYS 21 -39.622 -10.472 31.685 1.00 99.99 N ATOM 168 CA LYS 21 -39.031 -9.845 30.521 1.00 99.99 C ATOM 169 C LYS 21 -39.587 -10.416 29.224 1.00 99.99 C ATOM 170 O LYS 21 -39.929 -9.643 28.333 1.00 99.99 O ATOM 171 CB LYS 21 -37.511 -9.733 30.594 1.00 99.99 C ATOM 172 CG LYS 21 -36.962 -8.967 31.793 1.00 99.99 C ATOM 173 CD LYS 21 -35.464 -8.673 31.786 1.00 99.99 C ATOM 174 CE LYS 21 -34.992 -7.603 32.766 1.00 99.99 C ATOM 175 NZ LYS 21 -33.567 -7.257 32.654 1.00 99.99 N ATOM 176 N ASP 22 -39.765 -11.732 29.087 1.00 99.99 N ATOM 177 CA ASP 22 -40.434 -12.288 27.929 1.00 99.99 C ATOM 178 C ASP 22 -41.805 -11.679 27.671 1.00 99.99 C ATOM 179 O ASP 22 -42.062 -11.188 26.573 1.00 99.99 O ATOM 180 CB ASP 22 -40.515 -13.809 28.041 1.00 99.99 C ATOM 181 CG ASP 22 -41.482 -14.377 27.011 1.00 99.99 C ATOM 182 OD1 ASP 22 -41.109 -14.476 25.822 1.00 99.99 O ATOM 183 OD2 ASP 22 -42.685 -14.624 27.250 1.00 99.99 O ATOM 184 N LEU 23 -42.712 -11.721 28.650 1.00 99.99 N ATOM 185 CA LEU 23 -44.031 -11.126 28.562 1.00 99.99 C ATOM 186 C LEU 23 -44.147 -9.813 27.800 1.00 99.99 C ATOM 187 O LEU 23 -44.700 -9.729 26.706 1.00 99.99 O ATOM 188 CB LEU 23 -44.650 -11.101 29.956 1.00 99.99 C ATOM 189 CG LEU 23 -46.152 -10.839 30.000 1.00 99.99 C ATOM 190 CD1 LEU 23 -46.773 -11.024 31.382 1.00 99.99 C ATOM 191 CD2 LEU 23 -46.487 -9.397 29.628 1.00 99.99 C ATOM 192 N THR 24 -43.540 -8.781 28.391 1.00 99.99 N ATOM 193 CA THR 24 -43.503 -7.404 27.939 1.00 99.99 C ATOM 194 C THR 24 -43.281 -7.345 26.435 1.00 99.99 C ATOM 195 O THR 24 -44.131 -6.801 25.733 1.00 99.99 O ATOM 196 CB THR 24 -42.611 -6.425 28.698 1.00 99.99 C ATOM 197 OG1 THR 24 -41.235 -6.564 28.424 1.00 99.99 O ATOM 198 CG2 THR 24 -42.904 -6.344 30.193 1.00 99.99 C ATOM 199 N LYS 25 -42.109 -7.815 26.003 1.00 99.99 N ATOM 200 CA LYS 25 -41.458 -7.736 24.711 1.00 99.99 C ATOM 201 C LYS 25 -42.235 -8.513 23.658 1.00 99.99 C ATOM 202 O LYS 25 -42.480 -8.059 22.543 1.00 99.99 O ATOM 203 CB LYS 25 -40.006 -8.193 24.817 1.00 99.99 C ATOM 204 CG LYS 25 -39.173 -8.123 23.540 1.00 99.99 C ATOM 205 CD LYS 25 -37.666 -8.304 23.709 1.00 99.99 C ATOM 206 CE LYS 25 -37.067 -8.651 22.350 1.00 99.99 C ATOM 207 NZ LYS 25 -36.559 -7.448 21.672 1.00 99.99 N ATOM 208 N LEU 26 -42.584 -9.744 24.041 1.00 99.99 N ATOM 209 CA LEU 26 -43.268 -10.620 23.112 1.00 99.99 C ATOM 210 C LEU 26 -44.433 -11.321 23.794 1.00 99.99 C ATOM 211 O LEU 26 -45.594 -11.177 23.414 1.00 99.99 O ATOM 212 CB LEU 26 -42.149 -11.537 22.622 1.00 99.99 C ATOM 213 CG LEU 26 -42.513 -12.503 21.499 1.00 99.99 C ATOM 214 CD1 LEU 26 -42.837 -11.707 20.239 1.00 99.99 C ATOM 215 CD2 LEU 26 -41.394 -13.490 21.183 1.00 99.99 C ATOM 216 N GLY 27 -44.211 -12.152 24.816 1.00 99.99 N ATOM 217 CA GLY 27 -45.160 -13.062 25.422 1.00 99.99 C ATOM 218 C GLY 27 -45.215 -14.338 24.595 1.00 99.99 C ATOM 219 O GLY 27 -46.149 -14.604 23.841 1.00 99.99 O ATOM 220 N ALA 28 -44.138 -15.099 24.803 1.00 99.99 N ATOM 221 CA ALA 28 -43.950 -16.428 24.253 1.00 99.99 C ATOM 222 C ALA 28 -43.572 -17.483 25.283 1.00 99.99 C ATOM 223 O ALA 28 -44.283 -18.446 25.558 1.00 99.99 O ATOM 224 CB ALA 28 -42.948 -16.309 23.109 1.00 99.99 C ATOM 225 N ILE 29 -42.368 -17.359 25.847 1.00 99.99 N ATOM 226 CA ILE 29 -41.786 -18.164 26.902 1.00 99.99 C ATOM 227 C ILE 29 -42.644 -18.202 28.158 1.00 99.99 C ATOM 228 O ILE 29 -42.671 -19.259 28.785 1.00 99.99 O ATOM 229 CB ILE 29 -40.341 -17.840 27.267 1.00 99.99 C ATOM 230 CG1 ILE 29 -39.399 -17.865 26.067 1.00 99.99 C ATOM 231 CG2 ILE 29 -39.731 -18.471 28.517 1.00 99.99 C ATOM 232 CD1 ILE 29 -39.054 -19.224 25.465 1.00 99.99 C ATOM 233 N TYR 30 -43.372 -17.130 28.479 1.00 99.99 N ATOM 234 CA TYR 30 -44.284 -16.994 29.595 1.00 99.99 C ATOM 235 C TYR 30 -45.508 -17.890 29.468 1.00 99.99 C ATOM 236 O TYR 30 -45.806 -18.664 30.375 1.00 99.99 O ATOM 237 CB TYR 30 -44.744 -15.555 29.815 1.00 99.99 C ATOM 238 CG TYR 30 -45.798 -15.366 30.881 1.00 99.99 C ATOM 239 CD1 TYR 30 -47.179 -15.453 30.667 1.00 99.99 C ATOM 240 CD2 TYR 30 -45.501 -14.799 32.126 1.00 99.99 C ATOM 241 CE1 TYR 30 -48.122 -15.106 31.641 1.00 99.99 C ATOM 242 CE2 TYR 30 -46.369 -14.464 33.172 1.00 99.99 C ATOM 243 CZ TYR 30 -47.743 -14.642 32.916 1.00 99.99 C ATOM 244 OH TYR 30 -48.657 -14.164 33.809 1.00 99.99 H ATOM 245 N ASP 31 -46.214 -17.724 28.347 1.00 99.99 N ATOM 246 CA ASP 31 -47.271 -18.622 27.924 1.00 99.99 C ATOM 247 C ASP 31 -46.887 -20.084 28.102 1.00 99.99 C ATOM 248 O ASP 31 -47.648 -20.821 28.724 1.00 99.99 O ATOM 249 CB ASP 31 -47.821 -18.278 26.543 1.00 99.99 C ATOM 250 CG ASP 31 -48.896 -19.230 26.039 1.00 99.99 C ATOM 251 OD1 ASP 31 -50.108 -18.921 26.042 1.00 99.99 O ATOM 252 OD2 ASP 31 -48.500 -20.286 25.500 1.00 99.99 O ATOM 253 N LYS 32 -45.695 -20.510 27.680 1.00 99.99 N ATOM 254 CA LYS 32 -45.193 -21.848 27.922 1.00 99.99 C ATOM 255 C LYS 32 -45.117 -22.160 29.409 1.00 99.99 C ATOM 256 O LYS 32 -45.671 -23.175 29.825 1.00 99.99 O ATOM 257 CB LYS 32 -43.903 -22.223 27.198 1.00 99.99 C ATOM 258 CG LYS 32 -43.988 -22.062 25.683 1.00 99.99 C ATOM 259 CD LYS 32 -42.767 -22.431 24.845 1.00 99.99 C ATOM 260 CE LYS 32 -43.079 -22.260 23.361 1.00 99.99 C ATOM 261 NZ LYS 32 -42.053 -22.927 22.546 1.00 99.99 N ATOM 262 N THR 33 -44.463 -21.261 30.148 1.00 99.99 N ATOM 263 CA THR 33 -44.125 -21.391 31.551 1.00 99.99 C ATOM 264 C THR 33 -45.357 -21.596 32.420 1.00 99.99 C ATOM 265 O THR 33 -45.297 -22.349 33.391 1.00 99.99 O ATOM 266 CB THR 33 -43.223 -20.232 31.969 1.00 99.99 C ATOM 267 OG1 THR 33 -42.008 -20.095 31.267 1.00 99.99 O ATOM 268 CG2 THR 33 -42.669 -20.489 33.367 1.00 99.99 C ATOM 269 N LYS 34 -46.436 -20.858 32.149 1.00 99.99 N ATOM 270 CA LYS 34 -47.688 -20.943 32.873 1.00 99.99 C ATOM 271 C LYS 34 -48.310 -22.332 32.831 1.00 99.99 C ATOM 272 O LYS 34 -48.648 -22.896 33.869 1.00 99.99 O ATOM 273 CB LYS 34 -48.704 -19.878 32.473 1.00 99.99 C ATOM 274 CG LYS 34 -49.797 -19.590 33.498 1.00 99.99 C ATOM 275 CD LYS 34 -50.852 -18.624 32.966 1.00 99.99 C ATOM 276 CE LYS 34 -51.818 -19.269 31.975 1.00 99.99 C ATOM 277 NZ LYS 34 -52.699 -18.310 31.291 1.00 99.99 N ATOM 278 N LYS 35 -48.324 -22.964 31.655 1.00 99.99 N ATOM 279 CA LYS 35 -48.659 -24.341 31.355 1.00 99.99 C ATOM 280 C LYS 35 -47.716 -25.416 31.875 1.00 99.99 C ATOM 281 O LYS 35 -48.144 -26.391 32.489 1.00 99.99 O ATOM 282 CB LYS 35 -48.898 -24.466 29.852 1.00 99.99 C ATOM 283 CG LYS 35 -50.131 -23.725 29.345 1.00 99.99 C ATOM 284 CD LYS 35 -50.475 -24.072 27.899 1.00 99.99 C ATOM 285 CE LYS 35 -51.836 -23.567 27.430 1.00 99.99 C ATOM 286 NZ LYS 35 -52.230 -24.362 26.257 1.00 99.99 N ATOM 287 N TYR 36 -46.432 -25.303 31.530 1.00 99.99 N ATOM 288 CA TYR 36 -45.361 -26.276 31.591 1.00 99.99 C ATOM 289 C TYR 36 -44.027 -25.710 32.058 1.00 99.99 C ATOM 290 O TYR 36 -43.623 -24.608 31.692 1.00 99.99 O ATOM 291 CB TYR 36 -45.168 -27.051 30.291 1.00 99.99 C ATOM 292 CG TYR 36 -44.347 -28.292 30.545 1.00 99.99 C ATOM 293 CD1 TYR 36 -42.981 -28.310 30.240 1.00 99.99 C ATOM 294 CD2 TYR 36 -44.954 -29.353 31.228 1.00 99.99 C ATOM 295 CE1 TYR 36 -42.205 -29.296 30.862 1.00 99.99 C ATOM 296 CE2 TYR 36 -44.162 -30.409 31.693 1.00 99.99 C ATOM 297 CZ TYR 36 -42.759 -30.377 31.575 1.00 99.99 C ATOM 298 OH TYR 36 -42.001 -31.411 32.044 1.00 99.99 H ATOM 299 N TRP 37 -43.329 -26.545 32.831 1.00 99.99 N ATOM 300 CA TRP 37 -41.981 -26.266 33.284 1.00 99.99 C ATOM 301 C TRP 37 -40.928 -26.190 32.188 1.00 99.99 C ATOM 302 O TRP 37 -40.300 -27.201 31.885 1.00 99.99 O ATOM 303 CB TRP 37 -41.636 -27.378 34.271 1.00 99.99 C ATOM 304 CG TRP 37 -40.490 -27.036 35.169 1.00 99.99 C ATOM 305 CD1 TRP 37 -39.189 -26.896 34.831 1.00 99.99 C ATOM 306 CD2 TRP 37 -40.620 -27.026 36.622 1.00 99.99 C ATOM 307 NE1 TRP 37 -38.517 -26.680 36.018 1.00 99.99 N ATOM 308 CE2 TRP 37 -39.320 -26.782 37.135 1.00 99.99 C ATOM 309 CE3 TRP 37 -41.611 -27.301 37.577 1.00 99.99 C ATOM 310 CZ2 TRP 37 -39.043 -26.571 38.492 1.00 99.99 C ATOM 311 CZ3 TRP 37 -41.364 -27.165 38.948 1.00 99.99 C ATOM 312 CH2 TRP 37 -40.090 -26.794 39.394 1.00 99.99 H ATOM 313 N VAL 38 -40.657 -24.975 31.707 1.00 99.99 N ATOM 314 CA VAL 38 -39.655 -24.712 30.692 1.00 99.99 C ATOM 315 C VAL 38 -38.255 -24.642 31.287 1.00 99.99 C ATOM 316 O VAL 38 -37.370 -25.171 30.620 1.00 99.99 O ATOM 317 CB VAL 38 -39.851 -23.420 29.904 1.00 99.99 C ATOM 318 CG1 VAL 38 -41.236 -23.410 29.263 1.00 99.99 C ATOM 319 CG2 VAL 38 -39.635 -22.069 30.581 1.00 99.99 C ATOM 320 N TYR 39 -38.087 -24.118 32.503 1.00 99.99 N ATOM 321 CA TYR 39 -36.805 -24.020 33.171 1.00 99.99 C ATOM 322 C TYR 39 -35.985 -25.300 33.254 1.00 99.99 C ATOM 323 O TYR 39 -36.566 -26.249 33.774 1.00 99.99 O ATOM 324 CB TYR 39 -37.127 -23.416 34.535 1.00 99.99 C ATOM 325 CG TYR 39 -35.975 -23.340 35.507 1.00 99.99 C ATOM 326 CD1 TYR 39 -36.167 -24.016 36.717 1.00 99.99 C ATOM 327 CD2 TYR 39 -34.821 -22.564 35.345 1.00 99.99 C ATOM 328 CE1 TYR 39 -35.145 -23.906 37.669 1.00 99.99 C ATOM 329 CE2 TYR 39 -33.766 -22.475 36.262 1.00 99.99 C ATOM 330 CZ TYR 39 -33.954 -23.181 37.465 1.00 99.99 C ATOM 331 OH TYR 39 -32.935 -23.256 38.370 1.00 99.99 H ATOM 332 N GLN 40 -34.739 -25.250 32.776 1.00 99.99 N ATOM 333 CA GLN 40 -33.652 -26.192 32.955 1.00 99.99 C ATOM 334 C GLN 40 -33.496 -26.865 34.311 1.00 99.99 C ATOM 335 O GLN 40 -32.948 -27.964 34.341 1.00 99.99 O ATOM 336 CB GLN 40 -32.326 -25.563 32.539 1.00 99.99 C ATOM 337 CG GLN 40 -31.794 -24.441 33.426 1.00 99.99 C ATOM 338 CD GLN 40 -30.696 -23.586 32.809 1.00 99.99 C ATOM 339 OE1 GLN 40 -29.857 -23.093 33.559 1.00 99.99 O ATOM 340 NE2 GLN 40 -30.700 -23.187 31.536 1.00 99.99 N ATOM 341 N GLY 41 -33.831 -26.323 35.485 1.00 99.99 N ATOM 342 CA GLY 41 -33.701 -26.843 36.831 1.00 99.99 C ATOM 343 C GLY 41 -34.851 -27.791 37.140 1.00 99.99 C ATOM 344 O GLY 41 -35.656 -27.466 38.011 1.00 99.99 O ATOM 345 N LYS 42 -34.894 -28.907 36.409 1.00 99.99 N ATOM 346 CA LYS 42 -35.905 -29.931 36.581 1.00 99.99 C ATOM 347 C LYS 42 -35.703 -30.630 37.919 1.00 99.99 C ATOM 348 O LYS 42 -34.705 -31.342 38.000 1.00 99.99 O ATOM 349 CB LYS 42 -35.786 -30.984 35.483 1.00 99.99 C ATOM 350 CG LYS 42 -36.209 -30.522 34.092 1.00 99.99 C ATOM 351 CD LYS 42 -37.633 -29.989 33.981 1.00 99.99 C ATOM 352 CE LYS 42 -38.116 -29.354 32.681 1.00 99.99 C ATOM 353 NZ LYS 42 -37.236 -28.325 32.103 1.00 99.99 N ATOM 354 N PRO 43 -36.621 -30.555 38.885 1.00 99.99 N ATOM 355 CA PRO 43 -36.502 -31.213 40.170 1.00 99.99 C ATOM 356 C PRO 43 -36.977 -32.638 39.924 1.00 99.99 C ATOM 357 O PRO 43 -38.181 -32.883 39.882 1.00 99.99 O ATOM 358 CB PRO 43 -37.438 -30.475 41.121 1.00 99.99 C ATOM 359 CG PRO 43 -38.595 -30.023 40.235 1.00 99.99 C ATOM 360 CD PRO 43 -37.851 -29.790 38.923 1.00 99.99 C ATOM 361 N VAL 44 -35.983 -33.515 39.769 1.00 99.99 N ATOM 362 CA VAL 44 -36.235 -34.923 39.531 1.00 99.99 C ATOM 363 C VAL 44 -35.735 -35.895 40.591 1.00 99.99 C ATOM 364 O VAL 44 -35.115 -36.932 40.366 1.00 99.99 O ATOM 365 CB VAL 44 -35.876 -35.440 38.142 1.00 99.99 C ATOM 366 CG1 VAL 44 -36.637 -34.652 37.079 1.00 99.99 C ATOM 367 CG2 VAL 44 -34.413 -35.296 37.735 1.00 99.99 C ATOM 368 N MET 45 -35.958 -35.482 41.840 1.00 99.99 N ATOM 369 CA MET 45 -35.310 -36.059 43.002 1.00 99.99 C ATOM 370 C MET 45 -36.209 -36.125 44.228 1.00 99.99 C ATOM 371 O MET 45 -36.835 -35.090 44.453 1.00 99.99 O ATOM 372 CB MET 45 -34.048 -35.263 43.318 1.00 99.99 C ATOM 373 CG MET 45 -34.144 -33.948 44.088 1.00 99.99 C ATOM 374 SD MET 45 -34.660 -32.548 43.063 1.00 99.99 S ATOM 375 CE MET 45 -33.166 -32.229 42.093 1.00 99.99 C ATOM 376 N PRO 46 -36.398 -37.247 44.926 1.00 99.99 N ATOM 377 CA PRO 46 -37.441 -37.347 45.926 1.00 99.99 C ATOM 378 C PRO 46 -37.173 -36.567 47.207 1.00 99.99 C ATOM 379 O PRO 46 -38.148 -36.393 47.934 1.00 99.99 O ATOM 380 CB PRO 46 -37.543 -38.852 46.158 1.00 99.99 C ATOM 381 CG PRO 46 -36.116 -39.362 45.989 1.00 99.99 C ATOM 382 CD PRO 46 -35.620 -38.467 44.857 1.00 99.99 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 246 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 73.31 44.8 58 85.3 68 ARMSMC SECONDARY STRUCTURE . . 78.36 54.5 33 97.1 34 ARMSMC SURFACE . . . . . . . . 71.47 50.0 48 85.7 56 ARMSMC BURIED . . . . . . . . 81.54 20.0 10 83.3 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.70 33.3 27 84.4 32 ARMSSC1 RELIABLE SIDE CHAINS . 83.25 33.3 24 82.8 29 ARMSSC1 SECONDARY STRUCTURE . . 93.03 35.3 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 81.21 39.1 23 85.2 27 ARMSSC1 BURIED . . . . . . . . 113.23 0.0 4 80.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.13 42.9 21 84.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 70.47 36.8 19 90.5 21 ARMSSC2 SECONDARY STRUCTURE . . 69.29 53.8 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 62.59 42.1 19 86.4 22 ARMSSC2 BURIED . . . . . . . . 100.53 50.0 2 66.7 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.58 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 54.71 71.4 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 68.72 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 69.58 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.08 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 85.08 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 110.29 0.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 85.08 50.0 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.99 (Number of atoms: 30) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.99 30 85.7 35 CRMSCA CRN = ALL/NP . . . . . 0.2663 CRMSCA SECONDARY STRUCTURE . . 6.26 17 100.0 17 CRMSCA SURFACE . . . . . . . . 8.11 25 86.2 29 CRMSCA BURIED . . . . . . . . 7.37 5 83.3 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.06 148 85.5 173 CRMSMC SECONDARY STRUCTURE . . 6.40 85 100.0 85 CRMSMC SURFACE . . . . . . . . 8.14 123 86.0 143 CRMSMC BURIED . . . . . . . . 7.63 25 83.3 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.05 126 80.8 156 CRMSSC RELIABLE SIDE CHAINS . 8.80 114 83.8 136 CRMSSC SECONDARY STRUCTURE . . 8.15 84 100.0 84 CRMSSC SURFACE . . . . . . . . 8.74 105 82.7 127 CRMSSC BURIED . . . . . . . . 10.47 21 72.4 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.53 246 83.1 296 CRMSALL SECONDARY STRUCTURE . . 7.37 152 100.0 152 CRMSALL SURFACE . . . . . . . . 8.41 205 84.4 243 CRMSALL BURIED . . . . . . . . 9.09 41 77.4 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.940 0.871 0.880 30 85.7 35 ERRCA SECONDARY STRUCTURE . . 94.439 0.896 0.902 17 100.0 17 ERRCA SURFACE . . . . . . . . 92.792 0.868 0.878 25 86.2 29 ERRCA BURIED . . . . . . . . 93.681 0.884 0.892 5 83.3 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.887 0.870 0.879 148 85.5 173 ERRMC SECONDARY STRUCTURE . . 94.289 0.894 0.900 85 100.0 85 ERRMC SURFACE . . . . . . . . 92.779 0.868 0.878 123 86.0 143 ERRMC BURIED . . . . . . . . 93.416 0.879 0.888 25 83.3 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.765 0.850 0.862 126 80.8 156 ERRSC RELIABLE SIDE CHAINS . 91.976 0.854 0.865 114 83.8 136 ERRSC SECONDARY STRUCTURE . . 92.523 0.863 0.873 84 100.0 84 ERRSC SURFACE . . . . . . . . 92.099 0.856 0.867 105 82.7 127 ERRSC BURIED . . . . . . . . 90.096 0.822 0.838 21 72.4 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.377 0.861 0.872 246 83.1 296 ERRALL SECONDARY STRUCTURE . . 93.389 0.878 0.886 152 100.0 152 ERRALL SURFACE . . . . . . . . 92.481 0.863 0.873 205 84.4 243 ERRALL BURIED . . . . . . . . 91.856 0.852 0.864 41 77.4 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 1 4 10 24 30 35 DISTCA CA (P) 2.86 2.86 11.43 28.57 68.57 35 DISTCA CA (RMS) 0.80 0.80 2.29 3.62 5.97 DISTCA ALL (N) 1 4 21 66 188 246 296 DISTALL ALL (P) 0.34 1.35 7.09 22.30 63.51 296 DISTALL ALL (RMS) 0.80 1.56 2.47 3.66 6.27 DISTALL END of the results output