####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS429_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS429_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 12 - 32 4.95 7.96 LONGEST_CONTINUOUS_SEGMENT: 21 13 - 33 4.97 8.22 LONGEST_CONTINUOUS_SEGMENT: 21 14 - 34 4.99 8.52 LONGEST_CONTINUOUS_SEGMENT: 21 15 - 35 4.99 8.72 LCS_AVERAGE: 55.51 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 12 - 27 1.65 8.66 LCS_AVERAGE: 35.43 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 15 - 27 0.75 8.88 LCS_AVERAGE: 23.76 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 5 16 21 3 4 7 10 12 16 16 17 18 20 21 21 22 24 25 26 29 30 30 31 LCS_GDT F 13 F 13 5 16 21 3 5 9 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT H 14 H 14 8 16 21 3 6 12 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT Y 15 Y 15 13 16 21 3 7 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT T 16 T 16 13 16 21 10 12 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT V 17 V 17 13 16 21 10 12 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT T 18 T 18 13 16 21 10 12 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT D 19 D 19 13 16 21 10 12 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT I 20 I 20 13 16 21 10 12 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT K 21 K 21 13 16 21 10 12 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT D 22 D 22 13 16 21 10 12 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT L 23 L 23 13 16 21 6 12 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT T 24 T 24 13 16 21 4 12 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT K 25 K 25 13 16 21 10 12 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT L 26 L 26 13 16 21 10 12 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT G 27 G 27 13 16 21 10 12 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT A 28 A 28 4 14 21 3 4 4 4 6 9 13 15 17 17 20 22 22 24 26 28 29 30 30 32 LCS_GDT I 29 I 29 4 5 21 3 4 4 4 6 9 13 15 17 17 19 22 22 24 26 28 29 30 30 32 LCS_GDT Y 30 Y 30 4 4 21 3 4 4 4 7 9 13 15 17 17 19 22 22 24 26 28 29 30 30 32 LCS_GDT D 31 D 31 4 5 21 3 4 4 4 5 6 7 9 12 15 18 19 21 24 26 28 29 30 30 32 LCS_GDT K 32 K 32 4 5 21 3 4 4 5 7 7 9 12 13 13 14 18 20 24 26 28 29 30 30 32 LCS_GDT T 33 T 33 4 5 21 3 4 4 5 7 8 9 10 13 13 14 15 19 22 26 28 29 30 30 32 LCS_GDT K 34 K 34 4 9 21 3 4 4 6 7 9 10 12 13 13 14 15 16 20 25 28 29 30 30 32 LCS_GDT K 35 K 35 5 10 21 3 4 5 8 9 10 10 12 13 13 14 18 22 24 26 28 29 30 30 32 LCS_GDT Y 36 Y 36 5 11 16 4 4 5 8 9 10 10 12 13 19 21 22 22 24 26 28 29 30 30 32 LCS_GDT W 37 W 37 5 11 16 4 5 7 8 9 10 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT V 38 V 38 6 11 16 4 6 7 8 9 10 10 12 13 13 13 13 19 22 24 26 29 30 30 32 LCS_GDT Y 39 Y 39 6 11 16 4 4 6 8 9 10 10 12 13 13 13 13 14 15 17 20 20 27 30 32 LCS_GDT Q 40 Q 40 7 11 16 4 6 7 8 9 10 10 12 13 13 13 13 14 16 18 22 26 28 30 32 LCS_GDT G 41 G 41 7 11 16 4 6 7 8 9 10 10 12 13 13 13 13 14 16 18 23 26 28 30 32 LCS_GDT K 42 K 42 7 11 16 4 6 7 8 9 10 12 16 18 20 21 21 22 24 26 28 29 30 30 32 LCS_GDT P 43 P 43 7 11 16 4 6 7 8 9 10 10 12 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT V 44 V 44 7 11 16 3 6 7 10 11 15 16 17 18 20 21 22 22 24 26 28 29 30 30 32 LCS_GDT M 45 M 45 7 11 16 3 5 7 8 9 10 10 13 16 17 18 19 21 24 26 28 29 30 30 31 LCS_GDT P 46 P 46 7 11 16 3 4 7 8 9 10 10 11 11 13 17 17 20 20 21 21 22 24 28 29 LCS_AVERAGE LCS_A: 38.23 ( 23.76 35.43 55.51 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 12 13 14 15 16 16 17 18 20 21 22 22 24 26 28 29 30 30 32 GDT PERCENT_AT 28.57 34.29 37.14 40.00 42.86 45.71 45.71 48.57 51.43 57.14 60.00 62.86 62.86 68.57 74.29 80.00 82.86 85.71 85.71 91.43 GDT RMS_LOCAL 0.35 0.49 0.75 1.05 1.31 1.65 1.63 1.86 2.08 2.77 3.12 3.81 3.43 4.13 5.20 5.46 5.63 5.78 5.78 6.81 GDT RMS_ALL_AT 9.33 9.25 8.88 8.78 8.68 8.66 8.59 8.63 8.58 8.44 8.29 8.04 8.17 7.90 8.12 7.98 7.59 7.67 7.67 7.37 # Checking swapping # possible swapping detected: Y 15 Y 15 # possible swapping detected: D 22 D 22 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 36 Y 36 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 3.253 0 0.572 0.996 5.968 60.357 48.333 LGA F 13 F 13 1.442 0 0.096 0.580 5.665 81.786 54.329 LGA H 14 H 14 0.679 0 0.092 1.213 5.537 88.214 62.286 LGA Y 15 Y 15 1.818 0 0.229 0.738 5.768 75.000 52.619 LGA T 16 T 16 2.406 0 0.206 0.966 3.947 66.786 60.748 LGA V 17 V 17 2.088 0 0.075 0.267 3.177 70.952 65.102 LGA T 18 T 18 1.372 0 0.062 0.086 1.619 81.548 82.789 LGA D 19 D 19 1.583 0 0.009 0.289 2.548 77.143 70.000 LGA I 20 I 20 1.581 0 0.117 0.195 2.442 77.143 72.976 LGA K 21 K 21 1.287 0 0.088 1.284 6.506 85.952 65.079 LGA D 22 D 22 0.681 0 0.149 0.839 2.165 86.190 83.988 LGA L 23 L 23 1.562 0 0.128 1.272 5.898 81.548 64.940 LGA T 24 T 24 0.722 0 0.076 0.136 1.074 90.476 89.184 LGA K 25 K 25 1.305 0 0.078 0.559 2.004 79.286 77.672 LGA L 26 L 26 1.648 0 0.040 1.188 4.098 75.000 66.488 LGA G 27 G 27 1.362 0 0.200 0.200 4.465 59.286 59.286 LGA A 28 A 28 8.715 0 0.421 0.513 10.526 6.905 5.524 LGA I 29 I 29 10.537 0 0.061 1.356 14.468 0.000 0.179 LGA Y 30 Y 30 11.129 0 0.377 1.231 13.196 0.000 0.000 LGA D 31 D 31 15.881 0 0.178 1.048 21.340 0.000 0.000 LGA K 32 K 32 15.934 0 0.293 0.980 16.762 0.000 0.000 LGA T 33 T 33 15.929 0 0.158 0.316 17.367 0.000 0.000 LGA K 34 K 34 14.952 0 0.128 0.761 18.218 0.000 0.000 LGA K 35 K 35 11.855 0 0.275 1.543 14.848 1.310 0.582 LGA Y 36 Y 36 7.899 0 0.254 1.368 14.471 7.381 2.579 LGA W 37 W 37 3.770 0 0.103 0.941 6.828 40.357 42.925 LGA V 38 V 38 8.212 0 0.115 0.218 12.123 3.810 2.245 LGA Y 39 Y 39 12.288 0 0.591 1.388 22.867 0.000 0.000 LGA Q 40 Q 40 13.568 0 0.221 0.737 17.710 0.000 0.000 LGA G 41 G 41 12.736 0 0.068 0.068 12.736 0.000 0.000 LGA K 42 K 42 6.363 0 0.123 0.590 8.231 18.690 24.233 LGA P 43 P 43 6.588 0 0.049 0.190 10.762 22.381 13.197 LGA V 44 V 44 4.822 0 0.125 0.176 8.140 20.833 25.306 LGA M 45 M 45 12.007 0 0.146 0.936 16.039 0.357 0.179 LGA P 46 P 46 15.321 0 0.062 0.486 18.214 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 7.336 7.264 8.236 38.820 34.079 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 17 1.86 50.714 46.476 0.866 LGA_LOCAL RMSD: 1.863 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.631 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 7.336 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.654612 * X + -0.617176 * Y + 0.436552 * Z + -49.082481 Y_new = -0.278443 * X + 0.733723 * Y + 0.619774 * Z + -22.318506 Z_new = -0.702818 * X + 0.284156 * Y + -0.652152 * Z + -72.406204 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.739420 0.779351 2.730677 [DEG: -156.9572 44.6535 156.4563 ] ZXZ: 2.527937 2.281216 -1.186580 [DEG: 144.8401 130.7041 -67.9861 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS429_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS429_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 17 1.86 46.476 7.34 REMARK ---------------------------------------------------------- MOLECULE T0548TS429_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REFINED REMARK PARENT 3L2Q_A ATOM 87 N HIS 12 -42.127 -28.453 37.297 1.00 0.00 N ATOM 88 CA HIS 12 -40.728 -28.901 37.177 1.00 0.00 C ATOM 89 C HIS 12 -40.041 -28.441 35.884 1.00 0.00 C ATOM 90 O HIS 12 -39.060 -29.018 35.414 1.00 0.00 O ATOM 91 CB HIS 12 -40.628 -30.439 37.352 1.00 0.00 C ATOM 92 CG HIS 12 -40.422 -31.352 36.146 1.00 0.00 C ATOM 93 ND1 HIS 12 -41.469 -31.911 35.430 1.00 0.00 N ATOM 94 CD2 HIS 12 -39.278 -31.910 35.590 1.00 0.00 C ATOM 95 CE1 HIS 12 -40.958 -32.780 34.535 1.00 0.00 C ATOM 96 NE2 HIS 12 -39.616 -32.789 34.561 1.00 0.00 N ATOM 97 N PHE 13 -40.523 -27.317 35.380 1.00 0.00 N ATOM 98 CA PHE 13 -39.945 -26.546 34.310 1.00 0.00 C ATOM 99 C PHE 13 -39.896 -25.101 34.808 1.00 0.00 C ATOM 100 O PHE 13 -40.928 -24.490 35.089 1.00 0.00 O ATOM 101 CB PHE 13 -40.846 -26.731 33.080 1.00 0.00 C ATOM 102 CG PHE 13 -40.924 -28.161 32.596 1.00 0.00 C ATOM 103 CD1 PHE 13 -39.749 -28.876 32.281 1.00 0.00 C ATOM 104 CD2 PHE 13 -42.175 -28.808 32.530 1.00 0.00 C ATOM 105 CE1 PHE 13 -39.821 -30.232 31.904 1.00 0.00 C ATOM 106 CE2 PHE 13 -42.257 -30.161 32.142 1.00 0.00 C ATOM 107 CZ PHE 13 -41.078 -30.875 31.826 1.00 0.00 C ATOM 108 N HIS 14 -38.711 -24.550 35.033 1.00 0.00 N ATOM 109 CA HIS 14 -38.639 -23.199 35.565 1.00 0.00 C ATOM 110 C HIS 14 -39.131 -22.155 34.552 1.00 0.00 C ATOM 111 O HIS 14 -38.439 -21.810 33.591 1.00 0.00 O ATOM 112 CB HIS 14 -37.204 -22.882 36.078 1.00 0.00 C ATOM 113 CG HIS 14 -36.673 -23.863 37.122 1.00 0.00 C ATOM 114 ND1 HIS 14 -35.804 -24.919 36.826 1.00 0.00 N ATOM 115 CD2 HIS 14 -36.876 -23.966 38.483 1.00 0.00 C ATOM 116 CE1 HIS 14 -35.574 -25.631 37.944 1.00 0.00 C ATOM 117 NE2 HIS 14 -36.205 -25.087 38.988 1.00 0.00 N ATOM 118 N TYR 15 -40.305 -21.603 34.813 1.00 0.00 N ATOM 119 CA TYR 15 -40.778 -20.467 34.059 1.00 0.00 C ATOM 120 C TYR 15 -40.019 -19.248 34.556 1.00 0.00 C ATOM 121 O TYR 15 -40.449 -18.618 35.535 1.00 0.00 O ATOM 122 CB TYR 15 -42.284 -20.337 34.289 1.00 0.00 C ATOM 123 CG TYR 15 -43.014 -21.628 33.991 1.00 0.00 C ATOM 124 CD1 TYR 15 -43.523 -21.879 32.703 1.00 0.00 C ATOM 125 CD2 TYR 15 -43.420 -22.462 35.066 1.00 0.00 C ATOM 126 CE1 TYR 15 -44.421 -22.936 32.473 1.00 0.00 C ATOM 127 CE2 TYR 15 -44.274 -23.563 34.839 1.00 0.00 C ATOM 128 CZ TYR 15 -44.804 -23.764 33.549 1.00 0.00 C ATOM 129 OH TYR 15 -45.636 -24.825 33.348 1.00 0.00 H ATOM 130 N THR 16 -38.933 -18.902 33.885 1.00 0.00 N ATOM 131 CA THR 16 -38.086 -17.809 34.278 1.00 0.00 C ATOM 132 C THR 16 -38.908 -16.539 34.362 1.00 0.00 C ATOM 133 O THR 16 -39.517 -16.056 33.413 1.00 0.00 O ATOM 134 CB THR 16 -36.879 -17.612 33.341 1.00 0.00 C ATOM 135 OG1 THR 16 -36.492 -18.854 32.761 1.00 0.00 O ATOM 136 CG2 THR 16 -35.668 -17.021 34.071 1.00 0.00 C ATOM 137 N VAL 17 -38.944 -15.909 35.516 1.00 0.00 N ATOM 138 CA VAL 17 -39.641 -14.662 35.681 1.00 0.00 C ATOM 139 C VAL 17 -39.079 -13.678 34.632 1.00 0.00 C ATOM 140 O VAL 17 -39.853 -12.844 34.164 1.00 0.00 O ATOM 141 CB VAL 17 -39.367 -14.187 37.118 1.00 0.00 C ATOM 142 CG1 VAL 17 -40.159 -12.944 37.497 1.00 0.00 C ATOM 143 CG2 VAL 17 -39.668 -15.268 38.152 1.00 0.00 C ATOM 144 N THR 18 -37.773 -13.749 34.281 1.00 0.00 N ATOM 145 CA THR 18 -37.142 -13.031 33.164 1.00 0.00 C ATOM 146 C THR 18 -37.556 -13.492 31.760 1.00 0.00 C ATOM 147 O THR 18 -37.858 -12.591 31.003 1.00 0.00 O ATOM 148 CB THR 18 -35.625 -13.061 33.355 1.00 0.00 C ATOM 149 OG1 THR 18 -35.365 -12.683 34.707 1.00 0.00 O ATOM 150 CG2 THR 18 -34.887 -12.090 32.438 1.00 0.00 C ATOM 151 N ASP 19 -37.706 -14.785 31.419 1.00 0.00 N ATOM 152 CA ASP 19 -38.283 -15.130 30.124 1.00 0.00 C ATOM 153 C ASP 19 -39.756 -14.743 30.082 1.00 0.00 C ATOM 154 O ASP 19 -40.210 -14.098 29.130 1.00 0.00 O ATOM 155 CB ASP 19 -38.059 -16.615 29.832 1.00 0.00 C ATOM 156 CG ASP 19 -36.582 -16.868 29.582 1.00 0.00 C ATOM 157 OD1 ASP 19 -36.090 -16.319 28.575 1.00 0.00 O ATOM 158 OD2 ASP 19 -35.977 -17.619 30.381 1.00 0.00 O ATOM 159 N ILE 20 -40.545 -15.009 31.119 1.00 0.00 N ATOM 160 CA ILE 20 -41.934 -14.618 31.194 1.00 0.00 C ATOM 161 C ILE 20 -42.021 -13.122 30.906 1.00 0.00 C ATOM 162 O ILE 20 -42.686 -12.759 29.924 1.00 0.00 O ATOM 163 CB ILE 20 -42.462 -14.978 32.611 1.00 0.00 C ATOM 164 CG1 ILE 20 -42.717 -16.490 32.684 1.00 0.00 C ATOM 165 CG2 ILE 20 -43.753 -14.211 32.947 1.00 0.00 C ATOM 166 CD1 ILE 20 -43.180 -16.990 34.050 1.00 0.00 C ATOM 167 N LYS 21 -41.338 -12.285 31.709 1.00 0.00 N ATOM 168 CA LYS 21 -41.208 -10.830 31.602 1.00 0.00 C ATOM 169 C LYS 21 -40.521 -10.290 30.324 1.00 0.00 C ATOM 170 O LYS 21 -40.887 -9.224 29.816 1.00 0.00 O ATOM 171 CB LYS 21 -40.387 -10.357 32.804 1.00 0.00 C ATOM 172 CG LYS 21 -40.279 -8.867 33.130 1.00 0.00 C ATOM 173 CD LYS 21 -39.095 -8.482 34.032 1.00 0.00 C ATOM 174 CE LYS 21 -38.891 -9.229 35.355 1.00 0.00 C ATOM 175 NZ LYS 21 -38.176 -10.468 34.922 1.00 0.00 N ATOM 176 N ASP 22 -39.437 -10.908 29.811 1.00 0.00 N ATOM 177 CA ASP 22 -38.800 -10.482 28.579 1.00 0.00 C ATOM 178 C ASP 22 -39.768 -10.626 27.437 1.00 0.00 C ATOM 179 O ASP 22 -40.103 -9.638 26.773 1.00 0.00 O ATOM 180 CB ASP 22 -37.551 -11.279 28.227 1.00 0.00 C ATOM 181 CG ASP 22 -36.414 -10.402 28.670 1.00 0.00 C ATOM 182 OD1 ASP 22 -36.169 -10.353 29.896 1.00 0.00 O ATOM 183 OD2 ASP 22 -36.177 -9.420 27.925 1.00 0.00 O ATOM 184 N LEU 23 -40.294 -11.828 27.336 1.00 0.00 N ATOM 185 CA LEU 23 -41.303 -12.147 26.404 1.00 0.00 C ATOM 186 C LEU 23 -42.688 -11.524 26.855 1.00 0.00 C ATOM 187 O LEU 23 -43.552 -11.294 25.992 1.00 0.00 O ATOM 188 CB LEU 23 -41.215 -13.690 26.294 1.00 0.00 C ATOM 189 CG LEU 23 -39.905 -14.433 25.825 1.00 0.00 C ATOM 190 CD1 LEU 23 -39.333 -13.788 24.597 1.00 0.00 C ATOM 191 CD2 LEU 23 -38.733 -14.555 26.785 1.00 0.00 C ATOM 192 N THR 24 -42.863 -10.996 28.081 1.00 0.00 N ATOM 193 CA THR 24 -44.037 -10.181 28.403 1.00 0.00 C ATOM 194 C THR 24 -44.018 -8.951 27.492 1.00 0.00 C ATOM 195 O THR 24 -45.030 -8.648 26.831 1.00 0.00 O ATOM 196 CB THR 24 -44.340 -9.702 29.862 1.00 0.00 C ATOM 197 OG1 THR 24 -43.469 -8.725 30.395 1.00 0.00 O ATOM 198 CG2 THR 24 -44.418 -10.753 30.951 1.00 0.00 C ATOM 199 N LYS 25 -42.888 -8.239 27.541 1.00 0.00 N ATOM 200 CA LYS 25 -42.654 -7.181 26.570 1.00 0.00 C ATOM 201 C LYS 25 -42.514 -7.674 25.091 1.00 0.00 C ATOM 202 O LYS 25 -42.961 -7.011 24.142 1.00 0.00 O ATOM 203 CB LYS 25 -41.357 -6.406 26.827 1.00 0.00 C ATOM 204 CG LYS 25 -40.917 -5.824 28.173 1.00 0.00 C ATOM 205 CD LYS 25 -39.510 -5.265 27.955 1.00 0.00 C ATOM 206 CE LYS 25 -38.286 -6.191 28.117 1.00 0.00 C ATOM 207 NZ LYS 25 -37.083 -5.408 27.875 1.00 0.00 N ATOM 208 N LEU 26 -41.848 -8.793 24.838 1.00 0.00 N ATOM 209 CA LEU 26 -41.622 -9.283 23.500 1.00 0.00 C ATOM 210 C LEU 26 -42.897 -9.631 22.743 1.00 0.00 C ATOM 211 O LEU 26 -42.877 -9.801 21.525 1.00 0.00 O ATOM 212 CB LEU 26 -40.702 -10.500 23.535 1.00 0.00 C ATOM 213 CG LEU 26 -39.617 -10.416 22.452 1.00 0.00 C ATOM 214 CD1 LEU 26 -38.618 -11.542 22.576 1.00 0.00 C ATOM 215 CD2 LEU 26 -40.141 -10.467 21.024 1.00 0.00 C ATOM 216 N GLY 27 -44.030 -9.755 23.424 1.00 0.00 N ATOM 217 CA GLY 27 -45.224 -10.049 22.667 1.00 0.00 C ATOM 218 C GLY 27 -45.882 -8.810 22.048 1.00 0.00 C ATOM 219 O GLY 27 -46.648 -8.942 21.092 1.00 0.00 O ATOM 220 N ALA 28 -45.747 -7.654 22.679 1.00 0.00 N ATOM 221 CA ALA 28 -46.470 -6.424 22.286 1.00 0.00 C ATOM 222 C ALA 28 -48.023 -6.467 22.528 1.00 0.00 C ATOM 223 O ALA 28 -48.391 -6.101 23.656 1.00 0.00 O ATOM 224 CB ALA 28 -46.174 -6.029 20.836 1.00 0.00 C ATOM 225 N ILE 29 -48.987 -6.768 21.599 1.00 0.00 N ATOM 226 CA ILE 29 -50.445 -6.766 21.940 1.00 0.00 C ATOM 227 C ILE 29 -50.641 -7.732 23.131 1.00 0.00 C ATOM 228 O ILE 29 -50.046 -8.793 23.085 1.00 0.00 O ATOM 229 CB ILE 29 -51.252 -7.223 20.706 1.00 0.00 C ATOM 230 CG1 ILE 29 -50.850 -6.385 19.458 1.00 0.00 C ATOM 231 CG2 ILE 29 -52.739 -7.076 20.971 1.00 0.00 C ATOM 232 CD1 ILE 29 -50.995 -4.870 19.595 1.00 0.00 C ATOM 233 N TYR 30 -51.405 -7.456 24.198 1.00 0.00 N ATOM 234 CA TYR 30 -51.341 -8.175 25.479 1.00 0.00 C ATOM 235 C TYR 30 -50.010 -7.807 26.169 1.00 0.00 C ATOM 236 O TYR 30 -49.234 -8.626 26.684 1.00 0.00 O ATOM 237 CB TYR 30 -51.578 -9.696 25.313 1.00 0.00 C ATOM 238 CG TYR 30 -52.545 -10.345 26.306 1.00 0.00 C ATOM 239 CD1 TYR 30 -52.081 -10.895 27.514 1.00 0.00 C ATOM 240 CD2 TYR 30 -53.941 -10.318 26.055 1.00 0.00 C ATOM 241 CE1 TYR 30 -52.969 -11.467 28.436 1.00 0.00 C ATOM 242 CE2 TYR 30 -54.842 -10.920 26.958 1.00 0.00 C ATOM 243 CZ TYR 30 -54.352 -11.505 28.142 1.00 0.00 C ATOM 244 OH TYR 30 -55.216 -12.199 28.949 1.00 0.00 H ATOM 245 N ASP 31 -49.765 -6.516 26.263 1.00 0.00 N ATOM 246 CA ASP 31 -48.634 -5.854 26.837 1.00 0.00 C ATOM 247 C ASP 31 -48.444 -6.235 28.289 1.00 0.00 C ATOM 248 O ASP 31 -49.394 -6.411 29.035 1.00 0.00 O ATOM 249 CB ASP 31 -48.917 -4.382 26.727 1.00 0.00 C ATOM 250 CG ASP 31 -47.900 -3.498 27.401 1.00 0.00 C ATOM 251 OD1 ASP 31 -46.752 -3.940 27.622 1.00 0.00 O ATOM 252 OD2 ASP 31 -48.253 -2.417 27.921 1.00 0.00 O ATOM 253 N LYS 32 -47.198 -6.474 28.628 1.00 0.00 N ATOM 254 CA LYS 32 -46.740 -6.958 29.907 1.00 0.00 C ATOM 255 C LYS 32 -47.400 -8.274 30.369 1.00 0.00 C ATOM 256 O LYS 32 -47.104 -8.748 31.457 1.00 0.00 O ATOM 257 CB LYS 32 -46.843 -5.870 30.981 1.00 0.00 C ATOM 258 CG LYS 32 -45.445 -5.248 31.245 1.00 0.00 C ATOM 259 CD LYS 32 -44.824 -4.397 30.106 1.00 0.00 C ATOM 260 CE LYS 32 -45.415 -2.956 30.048 1.00 0.00 C ATOM 261 NZ LYS 32 -46.856 -2.935 30.115 1.00 0.00 N ATOM 262 N THR 33 -48.206 -8.920 29.523 1.00 0.00 N ATOM 263 CA THR 33 -48.822 -10.213 29.790 1.00 0.00 C ATOM 264 C THR 33 -48.499 -11.292 28.756 1.00 0.00 C ATOM 265 O THR 33 -49.032 -12.385 28.878 1.00 0.00 O ATOM 266 CB THR 33 -50.342 -9.979 29.922 1.00 0.00 C ATOM 267 OG1 THR 33 -50.782 -8.996 29.010 1.00 0.00 O ATOM 268 CG2 THR 33 -50.731 -9.471 31.289 1.00 0.00 C ATOM 269 N LYS 34 -47.594 -11.086 27.817 1.00 0.00 N ATOM 270 CA LYS 34 -47.245 -12.160 26.928 1.00 0.00 C ATOM 271 C LYS 34 -46.619 -13.270 27.769 1.00 0.00 C ATOM 272 O LYS 34 -46.801 -14.434 27.444 1.00 0.00 O ATOM 273 CB LYS 34 -46.316 -11.638 25.869 1.00 0.00 C ATOM 274 CG LYS 34 -46.790 -10.328 25.234 1.00 0.00 C ATOM 275 CD LYS 34 -48.033 -10.408 24.379 1.00 0.00 C ATOM 276 CE LYS 34 -47.857 -11.209 23.121 1.00 0.00 C ATOM 277 NZ LYS 34 -48.579 -10.541 22.085 1.00 0.00 N ATOM 278 N LYS 35 -45.915 -12.888 28.841 1.00 0.00 N ATOM 279 CA LYS 35 -45.352 -13.787 29.839 1.00 0.00 C ATOM 280 C LYS 35 -44.837 -15.117 29.278 1.00 0.00 C ATOM 281 O LYS 35 -45.132 -16.180 29.845 1.00 0.00 O ATOM 282 CB LYS 35 -46.376 -13.967 31.003 1.00 0.00 C ATOM 283 CG LYS 35 -47.880 -14.278 30.744 1.00 0.00 C ATOM 284 CD LYS 35 -48.324 -15.716 30.530 1.00 0.00 C ATOM 285 CE LYS 35 -47.962 -16.256 29.178 1.00 0.00 C ATOM 286 NZ LYS 35 -48.540 -17.534 28.961 1.00 0.00 N ATOM 287 N TYR 36 -44.029 -15.060 28.217 1.00 0.00 N ATOM 288 CA TYR 36 -43.516 -16.264 27.594 1.00 0.00 C ATOM 289 C TYR 36 -42.541 -17.025 28.472 1.00 0.00 C ATOM 290 O TYR 36 -41.337 -16.754 28.556 1.00 0.00 O ATOM 291 CB TYR 36 -42.898 -15.898 26.251 1.00 0.00 C ATOM 292 CG TYR 36 -43.758 -15.329 25.125 1.00 0.00 C ATOM 293 CD1 TYR 36 -44.116 -16.120 24.016 1.00 0.00 C ATOM 294 CD2 TYR 36 -44.036 -13.944 25.094 1.00 0.00 C ATOM 295 CE1 TYR 36 -44.797 -15.551 22.934 1.00 0.00 C ATOM 296 CE2 TYR 36 -44.680 -13.360 23.991 1.00 0.00 C ATOM 297 CZ TYR 36 -45.107 -14.175 22.933 1.00 0.00 C ATOM 298 OH TYR 36 -45.668 -13.594 21.823 1.00 0.00 H ATOM 299 N TRP 37 -43.086 -18.029 29.131 1.00 0.00 N ATOM 300 CA TRP 37 -42.462 -18.875 30.085 1.00 0.00 C ATOM 301 C TRP 37 -41.376 -19.667 29.349 1.00 0.00 C ATOM 302 O TRP 37 -41.716 -20.303 28.365 1.00 0.00 O ATOM 303 CB TRP 37 -43.548 -19.841 30.561 1.00 0.00 C ATOM 304 CG TRP 37 -44.819 -19.400 31.225 1.00 0.00 C ATOM 305 CD1 TRP 37 -44.861 -18.830 32.441 1.00 0.00 C ATOM 306 CD2 TRP 37 -46.206 -19.810 30.963 1.00 0.00 C ATOM 307 NE1 TRP 37 -46.168 -18.695 32.847 1.00 0.00 N ATOM 308 CE2 TRP 37 -47.042 -19.320 32.006 1.00 0.00 C ATOM 309 CE3 TRP 37 -46.840 -20.649 30.028 1.00 0.00 C ATOM 310 CZ2 TRP 37 -48.433 -19.562 32.071 1.00 0.00 C ATOM 311 CZ3 TRP 37 -48.230 -20.884 30.062 1.00 0.00 C ATOM 312 CH2 TRP 37 -49.043 -20.337 31.073 1.00 0.00 H ATOM 313 N VAL 38 -40.116 -19.730 29.753 1.00 0.00 N ATOM 314 CA VAL 38 -39.171 -20.526 28.978 1.00 0.00 C ATOM 315 C VAL 38 -38.422 -21.472 29.920 1.00 0.00 C ATOM 316 O VAL 38 -37.644 -20.999 30.742 1.00 0.00 O ATOM 317 CB VAL 38 -38.209 -19.525 28.300 1.00 0.00 C ATOM 318 CG1 VAL 38 -36.779 -20.039 28.080 1.00 0.00 C ATOM 319 CG2 VAL 38 -38.716 -18.996 26.968 1.00 0.00 C ATOM 320 N TYR 39 -38.675 -22.779 29.826 1.00 0.00 N ATOM 321 CA TYR 39 -37.785 -23.760 30.415 1.00 0.00 C ATOM 322 C TYR 39 -37.333 -24.714 29.314 1.00 0.00 C ATOM 323 O TYR 39 -36.151 -25.019 29.186 1.00 0.00 O ATOM 324 CB TYR 39 -38.455 -24.570 31.505 1.00 0.00 C ATOM 325 CG TYR 39 -37.461 -25.430 32.255 1.00 0.00 C ATOM 326 CD1 TYR 39 -36.356 -24.823 32.878 1.00 0.00 C ATOM 327 CD2 TYR 39 -37.584 -26.837 32.268 1.00 0.00 C ATOM 328 CE1 TYR 39 -35.442 -25.588 33.613 1.00 0.00 C ATOM 329 CE2 TYR 39 -36.671 -27.612 33.016 1.00 0.00 C ATOM 330 CZ TYR 39 -35.636 -26.981 33.737 1.00 0.00 C ATOM 331 OH TYR 39 -34.828 -27.725 34.560 1.00 0.00 H ATOM 332 N GLN 40 -38.266 -25.186 28.472 1.00 0.00 N ATOM 333 CA GLN 40 -37.917 -25.990 27.299 1.00 0.00 C ATOM 334 C GLN 40 -37.196 -25.224 26.149 1.00 0.00 C ATOM 335 O GLN 40 -36.840 -25.811 25.114 1.00 0.00 O ATOM 336 CB GLN 40 -39.225 -26.627 26.816 1.00 0.00 C ATOM 337 CG GLN 40 -39.250 -28.105 27.128 1.00 0.00 C ATOM 338 CD GLN 40 -40.402 -28.631 27.985 1.00 0.00 C ATOM 339 OE1 GLN 40 -41.310 -29.300 27.486 1.00 0.00 O ATOM 340 NE2 GLN 40 -40.377 -28.321 29.287 1.00 0.00 N ATOM 341 N GLY 41 -36.955 -23.926 26.326 1.00 0.00 N ATOM 342 CA GLY 41 -36.221 -23.158 25.342 1.00 0.00 C ATOM 343 C GLY 41 -37.111 -22.374 24.369 1.00 0.00 C ATOM 344 O GLY 41 -36.648 -22.055 23.274 1.00 0.00 O ATOM 345 N LYS 42 -38.393 -22.111 24.661 1.00 0.00 N ATOM 346 CA LYS 42 -39.276 -21.366 23.751 1.00 0.00 C ATOM 347 C LYS 42 -40.276 -20.506 24.513 1.00 0.00 C ATOM 348 O LYS 42 -41.027 -21.053 25.316 1.00 0.00 O ATOM 349 CB LYS 42 -40.010 -22.417 22.928 1.00 0.00 C ATOM 350 CG LYS 42 -39.021 -23.207 22.080 1.00 0.00 C ATOM 351 CD LYS 42 -39.570 -24.505 21.490 1.00 0.00 C ATOM 352 CE LYS 42 -38.483 -25.335 20.778 1.00 0.00 C ATOM 353 NZ LYS 42 -37.837 -24.504 19.743 1.00 0.00 N ATOM 354 N PRO 43 -40.258 -19.191 24.319 1.00 0.00 N ATOM 355 CA PRO 43 -41.175 -18.307 25.002 1.00 0.00 C ATOM 356 C PRO 43 -42.626 -18.798 24.874 1.00 0.00 C ATOM 357 O PRO 43 -43.045 -19.328 23.840 1.00 0.00 O ATOM 358 CB PRO 43 -40.915 -16.950 24.338 1.00 0.00 C ATOM 359 CG PRO 43 -39.428 -17.022 24.060 1.00 0.00 C ATOM 360 CD PRO 43 -39.281 -18.437 23.532 1.00 0.00 C ATOM 361 N VAL 44 -43.400 -18.732 25.966 1.00 0.00 N ATOM 362 CA VAL 44 -44.855 -19.042 25.930 1.00 0.00 C ATOM 363 C VAL 44 -45.751 -17.809 25.869 1.00 0.00 C ATOM 364 O VAL 44 -45.909 -17.093 26.888 1.00 0.00 O ATOM 365 CB VAL 44 -45.267 -19.874 27.163 1.00 0.00 C ATOM 366 CG1 VAL 44 -46.691 -20.372 26.982 1.00 0.00 C ATOM 367 CG2 VAL 44 -44.376 -21.066 27.454 1.00 0.00 C ATOM 368 N MET 45 -46.542 -17.616 24.825 1.00 0.00 N ATOM 369 CA MET 45 -47.408 -16.426 24.609 1.00 0.00 C ATOM 370 C MET 45 -48.632 -16.253 25.528 1.00 0.00 C ATOM 371 O MET 45 -49.067 -17.277 26.061 1.00 0.00 O ATOM 372 CB MET 45 -47.914 -16.570 23.195 1.00 0.00 C ATOM 373 CG MET 45 -48.422 -17.948 22.797 1.00 0.00 C ATOM 374 SD MET 45 -47.349 -18.830 21.596 1.00 0.00 S ATOM 375 CE MET 45 -48.593 -19.101 20.358 1.00 0.00 C ATOM 376 N PRO 46 -49.168 -15.028 25.751 1.00 0.00 N ATOM 377 CA PRO 46 -50.353 -14.879 26.574 1.00 0.00 C ATOM 378 C PRO 46 -51.519 -15.407 25.762 1.00 0.00 C ATOM 379 O PRO 46 -51.409 -15.553 24.531 1.00 0.00 O ATOM 380 CB PRO 46 -50.567 -13.400 26.778 1.00 0.00 C ATOM 381 CG PRO 46 -50.089 -12.815 25.459 1.00 0.00 C ATOM 382 CD PRO 46 -48.958 -13.775 25.027 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 58.35 57.4 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 50.51 73.5 34 100.0 34 ARMSMC SURFACE . . . . . . . . 58.37 55.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 58.30 66.7 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 59.32 56.2 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 62.02 51.7 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 49.42 64.7 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 64.28 48.1 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 14.27 100.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.83 32.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 73.65 38.1 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 79.71 46.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 79.49 36.4 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 128.41 0.0 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 109.24 12.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 107.15 14.3 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 145.64 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 109.24 12.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.98 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 77.98 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 21.06 100.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 77.98 50.0 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.34 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.34 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2096 CRMSCA SECONDARY STRUCTURE . . 6.16 17 100.0 17 CRMSCA SURFACE . . . . . . . . 7.66 29 100.0 29 CRMSCA BURIED . . . . . . . . 5.51 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.38 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 6.29 85 100.0 85 CRMSMC SURFACE . . . . . . . . 7.63 143 100.0 143 CRMSMC BURIED . . . . . . . . 5.99 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.13 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 9.01 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 8.75 84 100.0 84 CRMSSC SURFACE . . . . . . . . 9.51 127 100.0 127 CRMSSC BURIED . . . . . . . . 7.21 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.30 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 7.71 152 100.0 152 CRMSALL SURFACE . . . . . . . . 8.62 243 100.0 243 CRMSALL BURIED . . . . . . . . 6.63 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.728 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 5.701 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 7.049 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 5.178 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.707 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 5.784 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 6.955 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 5.523 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.263 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 8.149 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 7.724 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 8.618 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 6.707 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.479 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 6.821 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 7.776 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 6.116 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 13 30 35 35 DISTCA CA (P) 0.00 0.00 2.86 37.14 85.71 35 DISTCA CA (RMS) 0.00 0.00 2.98 4.26 6.04 DISTCA ALL (N) 1 2 8 82 237 296 296 DISTALL ALL (P) 0.34 0.68 2.70 27.70 80.07 296 DISTALL ALL (RMS) 0.96 1.37 2.53 4.04 6.32 DISTALL END of the results output