####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS409_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS409_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 12 - 31 4.88 14.12 LCS_AVERAGE: 49.14 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 12 - 27 1.95 15.82 LCS_AVERAGE: 29.47 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 14 - 26 0.92 16.06 LCS_AVERAGE: 20.41 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 4 16 20 0 3 4 5 7 10 15 16 16 16 17 17 17 19 19 19 20 20 20 20 LCS_GDT F 13 F 13 4 16 20 0 3 7 13 14 14 15 16 16 16 17 17 17 19 19 19 20 20 22 26 LCS_GDT H 14 H 14 13 16 20 4 11 12 13 14 14 15 16 16 16 17 17 17 19 19 19 20 23 25 29 LCS_GDT Y 15 Y 15 13 16 20 8 11 12 12 14 14 15 16 16 16 17 17 17 19 19 22 26 28 28 29 LCS_GDT T 16 T 16 13 16 20 9 11 12 13 14 14 15 16 16 16 18 18 19 21 22 23 26 28 28 29 LCS_GDT V 17 V 17 13 16 20 9 11 12 13 14 14 15 16 16 16 18 18 19 21 22 23 26 28 28 29 LCS_GDT T 18 T 18 13 16 20 9 11 12 13 14 14 15 16 16 16 18 18 19 21 22 23 26 28 28 29 LCS_GDT D 19 D 19 13 16 20 9 11 12 13 14 14 15 16 16 16 18 18 19 21 22 23 26 28 28 29 LCS_GDT I 20 I 20 13 16 20 9 11 12 13 14 14 15 16 16 16 18 18 19 21 22 23 26 28 28 29 LCS_GDT K 21 K 21 13 16 20 9 11 12 13 14 14 15 16 16 16 18 18 19 21 22 23 26 28 28 29 LCS_GDT D 22 D 22 13 16 20 9 11 12 13 14 14 15 16 16 16 18 18 19 21 22 23 26 28 28 29 LCS_GDT L 23 L 23 13 16 20 9 11 12 13 14 14 15 16 16 16 18 18 19 21 22 23 26 28 28 29 LCS_GDT T 24 T 24 13 16 20 9 11 12 13 14 14 15 16 16 16 18 18 19 21 22 23 26 28 28 29 LCS_GDT K 25 K 25 13 16 20 3 11 12 13 14 14 15 16 16 16 18 18 19 19 20 22 26 28 28 29 LCS_GDT L 26 L 26 13 16 20 3 4 7 13 14 14 15 16 16 16 18 18 19 19 20 22 22 24 26 27 LCS_GDT G 27 G 27 5 16 20 3 4 5 5 5 13 15 16 16 16 18 18 19 19 20 20 21 23 25 26 LCS_GDT A 28 A 28 5 6 20 3 4 5 5 5 6 7 10 12 13 17 17 17 19 20 22 24 25 26 29 LCS_GDT I 29 I 29 5 6 20 3 4 5 5 5 6 7 10 10 13 14 15 15 19 20 22 26 28 28 29 LCS_GDT Y 30 Y 30 3 6 20 3 3 3 4 5 6 7 10 10 13 14 15 19 20 20 23 26 28 28 29 LCS_GDT D 31 D 31 3 4 20 3 3 3 4 4 4 10 13 15 16 16 18 19 21 22 23 26 28 28 29 LCS_GDT K 32 K 32 3 6 14 3 3 4 5 5 7 11 13 15 16 16 18 19 21 22 23 25 28 28 29 LCS_GDT T 33 T 33 4 7 14 3 4 4 5 7 7 11 13 15 16 16 18 19 21 22 23 26 28 28 29 LCS_GDT K 34 K 34 4 7 14 3 4 4 5 7 9 11 13 15 16 16 18 19 21 22 23 26 28 28 29 LCS_GDT K 35 K 35 4 7 14 4 4 5 6 7 9 11 13 15 16 16 18 19 21 22 23 26 28 28 29 LCS_GDT Y 36 Y 36 4 7 14 4 4 5 6 7 9 11 13 15 16 16 18 19 21 22 23 26 28 28 29 LCS_GDT W 37 W 37 4 7 14 4 4 4 5 7 7 9 10 13 16 18 18 19 19 22 23 26 28 28 29 LCS_GDT V 38 V 38 4 7 14 4 4 4 5 7 7 9 12 16 16 18 18 19 19 22 23 26 28 28 29 LCS_GDT Y 39 Y 39 4 7 14 1 3 4 5 7 7 9 10 10 10 11 14 15 15 19 22 24 26 28 29 LCS_GDT Q 40 Q 40 3 4 14 0 3 3 4 5 5 9 10 10 10 11 14 16 18 21 23 26 28 28 29 LCS_GDT G 41 G 41 3 4 14 1 3 3 4 6 7 9 12 16 16 18 18 19 21 22 23 26 28 28 29 LCS_GDT K 42 K 42 3 4 14 3 4 5 5 5 7 11 13 16 16 18 18 19 21 22 23 26 28 28 29 LCS_GDT P 43 P 43 3 4 14 3 4 5 5 5 7 11 13 15 16 16 18 19 21 22 23 24 28 28 29 LCS_GDT V 44 V 44 3 4 14 3 4 5 6 7 9 11 13 16 16 18 18 19 21 22 23 26 28 28 29 LCS_GDT M 45 M 45 3 4 10 3 3 4 4 6 9 11 13 15 16 18 18 19 21 22 23 26 28 28 29 LCS_GDT P 46 P 46 3 4 10 3 3 4 6 7 9 10 13 15 16 16 18 19 21 22 23 26 28 28 29 LCS_AVERAGE LCS_A: 33.01 ( 20.41 29.47 49.14 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 11 12 13 14 14 15 16 16 16 18 18 19 21 22 23 26 28 28 29 GDT PERCENT_AT 25.71 31.43 34.29 37.14 40.00 40.00 42.86 45.71 45.71 45.71 51.43 51.43 54.29 60.00 62.86 65.71 74.29 80.00 80.00 82.86 GDT RMS_LOCAL 0.25 0.37 0.60 1.12 1.17 1.17 1.58 1.95 1.95 1.95 3.94 3.94 4.13 4.78 4.99 5.15 6.29 6.35 6.35 6.87 GDT RMS_ALL_AT 15.26 15.47 15.76 16.14 16.15 16.15 15.65 15.82 15.82 15.82 11.33 11.33 10.44 9.78 9.72 9.71 8.99 9.14 9.14 8.82 # Checking swapping # possible swapping detected: F 13 F 13 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 4.165 0 0.572 1.087 8.115 43.095 29.524 LGA F 13 F 13 1.758 0 0.635 1.194 5.497 63.690 49.654 LGA H 14 H 14 0.964 0 0.334 1.211 6.624 81.667 55.381 LGA Y 15 Y 15 2.314 0 0.128 1.164 5.192 72.976 58.571 LGA T 16 T 16 1.146 0 0.020 0.099 1.627 79.286 81.497 LGA V 17 V 17 1.208 0 0.061 0.174 2.190 83.690 77.891 LGA T 18 T 18 0.902 0 0.033 1.071 2.346 90.476 82.993 LGA D 19 D 19 0.816 0 0.037 0.092 1.781 90.476 82.738 LGA I 20 I 20 1.320 0 0.022 1.438 4.088 83.690 71.845 LGA K 21 K 21 1.413 0 0.032 0.573 3.411 81.429 71.481 LGA D 22 D 22 0.880 0 0.075 0.968 2.724 90.476 79.940 LGA L 23 L 23 0.703 0 0.055 1.381 3.934 92.857 81.310 LGA T 24 T 24 1.132 0 0.044 0.086 1.496 83.690 84.014 LGA K 25 K 25 1.189 0 0.609 1.146 6.984 75.476 58.889 LGA L 26 L 26 2.647 0 0.674 0.659 7.582 62.976 42.857 LGA G 27 G 27 3.874 0 0.422 0.422 4.718 42.262 42.262 LGA A 28 A 28 7.886 0 0.100 0.125 9.396 6.786 6.381 LGA I 29 I 29 11.773 0 0.596 1.122 14.270 0.000 0.179 LGA Y 30 Y 30 12.655 0 0.578 0.938 17.451 0.000 0.000 LGA D 31 D 31 16.255 0 0.391 0.983 20.195 0.000 0.000 LGA K 32 K 32 21.616 0 0.076 1.216 25.174 0.000 0.000 LGA T 33 T 33 24.406 0 0.295 1.412 27.502 0.000 0.000 LGA K 34 K 34 25.916 0 0.712 0.909 30.739 0.000 0.000 LGA K 35 K 35 25.929 0 0.686 1.102 35.339 0.000 0.000 LGA Y 36 Y 36 22.607 0 0.090 1.412 26.403 0.000 0.000 LGA W 37 W 37 20.595 0 0.056 1.185 24.070 0.000 0.000 LGA V 38 V 38 19.516 0 0.592 0.510 21.315 0.000 0.000 LGA Y 39 Y 39 20.932 0 0.604 0.982 23.148 0.000 0.000 LGA Q 40 Q 40 22.943 0 0.535 0.485 23.790 0.000 0.000 LGA G 41 G 41 26.714 0 0.488 0.488 28.289 0.000 0.000 LGA K 42 K 42 28.993 0 0.591 0.980 36.014 0.000 0.000 LGA P 43 P 43 27.406 0 0.669 0.638 31.600 0.000 0.000 LGA V 44 V 44 20.690 0 0.271 1.113 23.202 0.000 0.000 LGA M 45 M 45 18.390 0 0.588 0.802 19.074 0.000 0.000 LGA P 46 P 46 17.606 0 0.611 0.583 21.295 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 8.535 8.400 9.674 35.000 30.212 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 16 1.95 45.000 40.801 0.781 LGA_LOCAL RMSD: 1.948 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.816 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 8.535 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.318366 * X + -0.225100 * Y + 0.920855 * Z + -125.567635 Y_new = 0.947398 * X + 0.109221 * Y + -0.300844 * Z + -7.273359 Z_new = -0.032857 * X + 0.968195 * Y + 0.248032 * Z + -26.655304 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.246609 0.032863 1.320010 [DEG: 71.4255 1.8829 75.6310 ] ZXZ: 1.255026 1.320148 -0.033923 [DEG: 71.9077 75.6389 -1.9437 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS409_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS409_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 16 1.95 40.801 8.54 REMARK ---------------------------------------------------------- MOLECULE T0548TS409_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 2d1hA ATOM 87 N HIS 12 -43.391 -24.510 35.296 1.00102.93 N ATOM 88 CA HIS 12 -43.165 -25.649 34.447 1.00102.93 C ATOM 89 ND1 HIS 12 -44.327 -27.216 31.188 1.00102.93 N ATOM 90 CG HIS 12 -43.881 -26.993 32.472 1.00102.93 C ATOM 91 CB HIS 12 -44.167 -25.770 33.288 1.00102.93 C ATOM 92 NE2 HIS 12 -43.133 -29.001 31.764 1.00102.93 N ATOM 93 CD2 HIS 12 -43.157 -28.096 32.807 1.00102.93 C ATOM 94 CE1 HIS 12 -43.849 -28.429 30.814 1.00102.93 C ATOM 95 C HIS 12 -41.816 -25.580 33.810 1.00102.93 C ATOM 96 O HIS 12 -41.065 -26.555 33.812 1.00102.93 O ATOM 97 N PHE 13 -41.486 -24.415 33.230 1.00 87.89 N ATOM 98 CA PHE 13 -40.234 -24.215 32.564 1.00 87.89 C ATOM 99 CB PHE 13 -40.156 -22.939 31.705 1.00 87.89 C ATOM 100 CG PHE 13 -40.945 -23.109 30.446 1.00 87.89 C ATOM 101 CD1 PHE 13 -40.448 -23.868 29.411 1.00 87.89 C ATOM 102 CD2 PHE 13 -42.162 -22.489 30.278 1.00 87.89 C ATOM 103 CE1 PHE 13 -41.160 -24.024 28.243 1.00 87.89 C ATOM 104 CE2 PHE 13 -42.881 -22.640 29.113 1.00 87.89 C ATOM 105 CZ PHE 13 -42.383 -23.413 28.091 1.00 87.89 C ATOM 106 C PHE 13 -39.135 -24.177 33.578 1.00 87.89 C ATOM 107 O PHE 13 -38.001 -24.543 33.281 1.00 87.89 O ATOM 108 N HIS 14 -39.442 -23.751 34.817 1.00101.09 N ATOM 109 CA HIS 14 -38.419 -23.583 35.808 1.00101.09 C ATOM 110 ND1 HIS 14 -39.222 -26.685 36.856 1.00101.09 N ATOM 111 CG HIS 14 -38.226 -25.771 37.120 1.00101.09 C ATOM 112 CB HIS 14 -37.604 -24.856 36.108 1.00101.09 C ATOM 113 NE2 HIS 14 -38.737 -26.879 39.018 1.00101.09 N ATOM 114 CD2 HIS 14 -37.944 -25.902 38.445 1.00101.09 C ATOM 115 CE1 HIS 14 -39.488 -27.321 38.026 1.00101.09 C ATOM 116 C HIS 14 -37.455 -22.532 35.364 1.00101.09 C ATOM 117 O HIS 14 -36.245 -22.747 35.347 1.00101.09 O ATOM 118 N TYR 15 -37.982 -21.353 34.986 1.00130.95 N ATOM 119 CA TYR 15 -37.124 -20.259 34.645 1.00130.95 C ATOM 120 CB TYR 15 -37.280 -19.717 33.218 1.00130.95 C ATOM 121 CG TYR 15 -38.690 -19.306 33.059 1.00130.95 C ATOM 122 CD1 TYR 15 -39.637 -20.254 32.776 1.00130.95 C ATOM 123 CD2 TYR 15 -39.063 -17.992 33.184 1.00130.95 C ATOM 124 CE1 TYR 15 -40.952 -19.906 32.627 1.00130.95 C ATOM 125 CE2 TYR 15 -40.378 -17.631 33.038 1.00130.95 C ATOM 126 CZ TYR 15 -41.317 -18.592 32.755 1.00130.95 C ATOM 127 OH TYR 15 -42.669 -18.236 32.602 1.00130.95 H ATOM 128 C TYR 15 -37.424 -19.164 35.619 1.00130.95 C ATOM 129 O TYR 15 -38.352 -19.270 36.420 1.00130.95 O ATOM 130 N THR 16 -36.603 -18.097 35.607 1.00 41.99 N ATOM 131 CA THR 16 -36.735 -17.052 36.581 1.00 41.99 C ATOM 132 CB THR 16 -35.468 -16.282 36.792 1.00 41.99 C ATOM 133 OG1 THR 16 -35.110 -15.612 35.595 1.00 41.99 O ATOM 134 CG2 THR 16 -34.352 -17.265 37.182 1.00 41.99 C ATOM 135 C THR 16 -37.784 -16.072 36.170 1.00 41.99 C ATOM 136 O THR 16 -38.365 -16.155 35.092 1.00 41.99 O ATOM 137 N VAL 17 -38.059 -15.114 37.076 1.00 29.88 N ATOM 138 CA VAL 17 -39.035 -14.084 36.876 1.00 29.88 C ATOM 139 CB VAL 17 -39.173 -13.189 38.067 1.00 29.88 C ATOM 140 CG1 VAL 17 -40.118 -12.029 37.709 1.00 29.88 C ATOM 141 CG2 VAL 17 -39.636 -14.040 39.261 1.00 29.88 C ATOM 142 C VAL 17 -38.592 -13.229 35.739 1.00 29.88 C ATOM 143 O VAL 17 -39.408 -12.745 34.956 1.00 29.88 O ATOM 144 N THR 18 -37.273 -12.996 35.638 1.00104.55 N ATOM 145 CA THR 18 -36.792 -12.161 34.585 1.00104.55 C ATOM 146 CB THR 18 -35.309 -11.906 34.648 1.00104.55 C ATOM 147 OG1 THR 18 -34.957 -10.914 33.697 1.00104.55 O ATOM 148 CG2 THR 18 -34.532 -13.198 34.348 1.00104.55 C ATOM 149 C THR 18 -37.116 -12.823 33.286 1.00104.55 C ATOM 150 O THR 18 -37.552 -12.171 32.339 1.00104.55 O ATOM 151 N ASP 19 -36.936 -14.153 33.215 1.00 48.89 N ATOM 152 CA ASP 19 -37.172 -14.854 31.992 1.00 48.89 C ATOM 153 CB ASP 19 -36.858 -16.353 32.117 1.00 48.89 C ATOM 154 CG ASP 19 -35.346 -16.494 32.261 1.00 48.89 C ATOM 155 OD1 ASP 19 -34.614 -15.714 31.597 1.00 48.89 O ATOM 156 OD2 ASP 19 -34.902 -17.380 33.038 1.00 48.89 O ATOM 157 C ASP 19 -38.612 -14.694 31.602 1.00 48.89 C ATOM 158 O ASP 19 -38.917 -14.407 30.448 1.00 48.89 O ATOM 159 N ILE 20 -39.554 -14.847 32.548 1.00136.01 N ATOM 160 CA ILE 20 -40.934 -14.743 32.158 1.00136.01 C ATOM 161 CB ILE 20 -41.917 -15.123 33.234 1.00136.01 C ATOM 162 CG2 ILE 20 -41.636 -14.272 34.484 1.00136.01 C ATOM 163 CG1 ILE 20 -43.360 -14.981 32.702 1.00136.01 C ATOM 164 CD1 ILE 20 -43.686 -15.887 31.513 1.00136.01 C ATOM 165 C ILE 20 -41.263 -13.358 31.699 1.00136.01 C ATOM 166 O ILE 20 -41.987 -13.181 30.719 1.00136.01 O ATOM 167 N LYS 21 -40.749 -12.327 32.399 1.00109.00 N ATOM 168 CA LYS 21 -41.088 -10.980 32.044 1.00109.00 C ATOM 169 CB LYS 21 -40.447 -9.912 32.947 1.00109.00 C ATOM 170 CG LYS 21 -40.782 -8.495 32.469 1.00109.00 C ATOM 171 CD LYS 21 -40.351 -7.368 33.408 1.00109.00 C ATOM 172 CE LYS 21 -40.623 -5.975 32.832 1.00109.00 C ATOM 173 NZ LYS 21 -39.767 -5.740 31.647 1.00109.00 N ATOM 174 C LYS 21 -40.623 -10.683 30.657 1.00109.00 C ATOM 175 O LYS 21 -41.342 -10.056 29.883 1.00109.00 O ATOM 176 N ASP 22 -39.406 -11.114 30.289 1.00 82.61 N ATOM 177 CA ASP 22 -38.950 -10.749 28.984 1.00 82.61 C ATOM 178 CB ASP 22 -37.517 -11.212 28.671 1.00 82.61 C ATOM 179 CG ASP 22 -37.072 -10.401 27.456 1.00 82.61 C ATOM 180 OD1 ASP 22 -37.942 -9.697 26.876 1.00 82.61 O ATOM 181 OD2 ASP 22 -35.861 -10.449 27.107 1.00 82.61 O ATOM 182 C ASP 22 -39.864 -11.375 27.983 1.00 82.61 C ATOM 183 O ASP 22 -40.264 -10.746 27.004 1.00 82.61 O ATOM 184 N LEU 23 -40.245 -12.639 28.242 1.00 64.64 N ATOM 185 CA LEU 23 -41.069 -13.376 27.333 1.00 64.64 C ATOM 186 CB LEU 23 -41.284 -14.837 27.763 1.00 64.64 C ATOM 187 CG LEU 23 -42.154 -15.648 26.784 1.00 64.64 C ATOM 188 CD1 LEU 23 -41.489 -15.751 25.401 1.00 64.64 C ATOM 189 CD2 LEU 23 -42.513 -17.022 27.369 1.00 64.64 C ATOM 190 C LEU 23 -42.409 -12.722 27.228 1.00 64.64 C ATOM 191 O LEU 23 -42.986 -12.664 26.142 1.00 64.64 O ATOM 192 N THR 24 -42.926 -12.179 28.350 1.00140.56 N ATOM 193 CA THR 24 -44.245 -11.613 28.352 1.00140.56 C ATOM 194 CB THR 24 -44.669 -11.007 29.662 1.00140.56 C ATOM 195 OG1 THR 24 -43.907 -9.848 29.957 1.00140.56 O ATOM 196 CG2 THR 24 -44.481 -12.059 30.766 1.00140.56 C ATOM 197 C THR 24 -44.255 -10.547 27.319 1.00140.56 C ATOM 198 O THR 24 -45.255 -10.375 26.623 1.00140.56 O ATOM 199 N LYS 25 -43.145 -9.796 27.195 1.00288.91 N ATOM 200 CA LYS 25 -43.092 -8.887 26.094 1.00288.91 C ATOM 201 CB LYS 25 -41.756 -8.123 26.020 1.00288.91 C ATOM 202 CG LYS 25 -41.649 -7.111 24.874 1.00288.91 C ATOM 203 CD LYS 25 -41.702 -7.714 23.465 1.00288.91 C ATOM 204 CE LYS 25 -40.448 -8.502 23.077 1.00288.91 C ATOM 205 NZ LYS 25 -40.595 -9.061 21.713 1.00288.91 N ATOM 206 C LYS 25 -43.168 -9.808 24.916 1.00288.91 C ATOM 207 O LYS 25 -42.204 -10.501 24.601 1.00288.91 O ATOM 208 N LEU 26 -44.329 -9.847 24.236 1.00242.71 N ATOM 209 CA LEU 26 -44.529 -10.803 23.186 1.00242.71 C ATOM 210 CB LEU 26 -45.840 -11.597 23.351 1.00242.71 C ATOM 211 CG LEU 26 -46.060 -12.697 22.294 1.00242.71 C ATOM 212 CD1 LEU 26 -45.021 -13.818 22.425 1.00242.71 C ATOM 213 CD2 LEU 26 -47.494 -13.247 22.340 1.00242.71 C ATOM 214 C LEU 26 -44.607 -10.079 21.885 1.00242.71 C ATOM 215 O LEU 26 -44.855 -8.878 21.838 1.00242.71 O ATOM 216 N GLY 27 -44.338 -10.785 20.774 1.00122.29 N ATOM 217 CA GLY 27 -44.481 -10.128 19.510 1.00122.29 C ATOM 218 C GLY 27 -45.877 -10.400 19.052 1.00122.29 C ATOM 219 O GLY 27 -46.171 -11.463 18.510 1.00122.29 O ATOM 220 N ALA 28 -46.784 -9.431 19.256 1.00240.87 N ATOM 221 CA ALA 28 -48.134 -9.641 18.837 1.00240.87 C ATOM 222 CB ALA 28 -48.856 -10.753 19.613 1.00240.87 C ATOM 223 C ALA 28 -48.881 -8.371 19.072 1.00240.87 C ATOM 224 O ALA 28 -48.321 -7.364 19.501 1.00240.87 O ATOM 225 N ILE 29 -50.190 -8.393 18.776 1.00195.82 N ATOM 226 CA ILE 29 -51.006 -7.235 18.965 1.00195.82 C ATOM 227 CB ILE 29 -52.440 -7.471 18.550 1.00195.82 C ATOM 228 CG2 ILE 29 -53.051 -8.548 19.464 1.00195.82 C ATOM 229 CG1 ILE 29 -53.245 -6.159 18.505 1.00195.82 C ATOM 230 CD1 ILE 29 -53.458 -5.495 19.866 1.00195.82 C ATOM 231 C ILE 29 -50.944 -6.914 20.423 1.00195.82 C ATOM 232 O ILE 29 -50.869 -5.748 20.808 1.00195.82 O ATOM 233 N TYR 30 -50.961 -7.958 21.276 1.00 67.96 N ATOM 234 CA TYR 30 -50.942 -7.755 22.695 1.00 67.96 C ATOM 235 CB TYR 30 -50.962 -9.072 23.493 1.00 67.96 C ATOM 236 CG TYR 30 -52.347 -9.623 23.470 1.00 67.96 C ATOM 237 CD1 TYR 30 -52.910 -10.129 22.320 1.00 67.96 C ATOM 238 CD2 TYR 30 -53.079 -9.647 24.633 1.00 67.96 C ATOM 239 CE1 TYR 30 -54.191 -10.634 22.335 1.00 67.96 C ATOM 240 CE2 TYR 30 -54.356 -10.149 24.659 1.00 67.96 C ATOM 241 CZ TYR 30 -54.913 -10.641 23.505 1.00 67.96 C ATOM 242 OH TYR 30 -56.226 -11.157 23.532 1.00 67.96 H ATOM 243 C TYR 30 -49.698 -7.027 23.095 1.00 67.96 C ATOM 244 O TYR 30 -49.775 -6.016 23.792 1.00 67.96 O ATOM 245 N ASP 31 -48.508 -7.480 22.652 1.00165.58 N ATOM 246 CA ASP 31 -47.347 -6.791 23.127 1.00165.58 C ATOM 247 CB ASP 31 -46.328 -7.707 23.810 1.00165.58 C ATOM 248 CG ASP 31 -46.957 -8.186 25.110 1.00165.58 C ATOM 249 OD1 ASP 31 -47.118 -7.357 26.045 1.00165.58 O ATOM 250 OD2 ASP 31 -47.288 -9.398 25.182 1.00165.58 O ATOM 251 C ASP 31 -46.690 -6.046 22.010 1.00165.58 C ATOM 252 O ASP 31 -47.351 -5.539 21.105 1.00165.58 O ATOM 253 N LYS 32 -45.347 -5.973 22.064 1.00159.83 N ATOM 254 CA LYS 32 -44.558 -5.178 21.165 1.00159.83 C ATOM 255 CB LYS 32 -43.050 -5.300 21.452 1.00159.83 C ATOM 256 CG LYS 32 -42.559 -4.459 22.635 1.00159.83 C ATOM 257 CD LYS 32 -43.235 -4.795 23.964 1.00159.83 C ATOM 258 CE LYS 32 -44.200 -3.703 24.431 1.00159.83 C ATOM 259 NZ LYS 32 -45.080 -3.288 23.317 1.00159.83 N ATOM 260 C LYS 32 -44.776 -5.585 19.740 1.00159.83 C ATOM 261 O LYS 32 -44.860 -4.723 18.868 1.00159.83 O ATOM 262 N THR 33 -44.847 -6.901 19.464 1.00166.13 N ATOM 263 CA THR 33 -45.045 -7.444 18.143 1.00166.13 C ATOM 264 CB THR 33 -46.415 -7.236 17.537 1.00166.13 C ATOM 265 OG1 THR 33 -46.580 -8.114 16.434 1.00166.13 O ATOM 266 CG2 THR 33 -46.614 -5.782 17.075 1.00166.13 C ATOM 267 C THR 33 -44.019 -6.925 17.184 1.00166.13 C ATOM 268 O THR 33 -44.295 -6.754 15.996 1.00166.13 O ATOM 269 N LYS 34 -42.786 -6.680 17.660 1.00116.05 N ATOM 270 CA LYS 34 -41.771 -6.256 16.740 1.00116.05 C ATOM 271 CB LYS 34 -41.610 -4.729 16.627 1.00116.05 C ATOM 272 CG LYS 34 -41.179 -4.035 17.919 1.00116.05 C ATOM 273 CD LYS 34 -40.756 -2.574 17.728 1.00116.05 C ATOM 274 CE LYS 34 -41.879 -1.569 18.000 1.00116.05 C ATOM 275 NZ LYS 34 -41.347 -0.187 18.022 1.00116.05 N ATOM 276 C LYS 34 -40.473 -6.828 17.200 1.00116.05 C ATOM 277 O LYS 34 -40.344 -7.246 18.350 1.00116.05 O ATOM 278 N LYS 35 -39.473 -6.878 16.296 1.00114.40 N ATOM 279 CA LYS 35 -38.206 -7.434 16.671 1.00114.40 C ATOM 280 CB LYS 35 -37.245 -7.705 15.498 1.00114.40 C ATOM 281 CG LYS 35 -37.721 -8.754 14.491 1.00114.40 C ATOM 282 CD LYS 35 -38.811 -8.251 13.547 1.00114.40 C ATOM 283 CE LYS 35 -38.259 -7.350 12.441 1.00114.40 C ATOM 284 NZ LYS 35 -39.329 -7.008 11.479 1.00114.40 N ATOM 285 C LYS 35 -37.501 -6.457 17.548 1.00114.40 C ATOM 286 O LYS 35 -37.588 -5.248 17.346 1.00114.40 O ATOM 287 N TYR 36 -36.792 -6.978 18.568 1.00162.63 N ATOM 288 CA TYR 36 -36.002 -6.142 19.417 1.00162.63 C ATOM 289 CB TYR 36 -36.559 -5.916 20.834 1.00162.63 C ATOM 290 CG TYR 36 -37.720 -4.985 20.765 1.00162.63 C ATOM 291 CD1 TYR 36 -37.514 -3.626 20.822 1.00162.63 C ATOM 292 CD2 TYR 36 -39.003 -5.467 20.646 1.00162.63 C ATOM 293 CE1 TYR 36 -38.578 -2.758 20.764 1.00162.63 C ATOM 294 CE2 TYR 36 -40.070 -4.602 20.589 1.00162.63 C ATOM 295 CZ TYR 36 -39.859 -3.247 20.649 1.00162.63 C ATOM 296 OH TYR 36 -40.956 -2.361 20.592 1.00162.63 H ATOM 297 C TYR 36 -34.682 -6.803 19.586 1.00162.63 C ATOM 298 O TYR 36 -34.549 -8.014 19.408 1.00162.63 O ATOM 299 N TRP 37 -33.659 -5.990 19.901 1.00154.09 N ATOM 300 CA TRP 37 -32.355 -6.515 20.156 1.00154.09 C ATOM 301 CB TRP 37 -31.219 -5.617 19.645 1.00154.09 C ATOM 302 CG TRP 37 -31.126 -5.566 18.143 1.00154.09 C ATOM 303 CD2 TRP 37 -32.043 -4.836 17.318 1.00154.09 C ATOM 304 CD1 TRP 37 -30.254 -6.187 17.299 1.00154.09 C ATOM 305 NE1 TRP 37 -30.576 -5.894 15.995 1.00154.09 N ATOM 306 CE2 TRP 37 -31.675 -5.062 15.992 1.00154.09 C ATOM 307 CE3 TRP 37 -33.106 -4.047 17.642 1.00154.09 C ATOM 308 CZ2 TRP 37 -32.372 -4.499 14.963 1.00154.09 C ATOM 309 CZ3 TRP 37 -33.804 -3.475 16.603 1.00154.09 C ATOM 310 CH2 TRP 37 -33.443 -3.699 15.291 1.00154.09 H ATOM 311 C TRP 37 -32.211 -6.588 21.634 1.00154.09 C ATOM 312 O TRP 37 -32.684 -5.722 22.368 1.00154.09 O ATOM 313 N VAL 38 -31.568 -7.660 22.114 1.00 43.53 N ATOM 314 CA VAL 38 -31.327 -7.783 23.514 1.00 43.53 C ATOM 315 CB VAL 38 -30.641 -9.076 23.846 1.00 43.53 C ATOM 316 CG1 VAL 38 -30.202 -9.042 25.319 1.00 43.53 C ATOM 317 CG2 VAL 38 -31.596 -10.234 23.500 1.00 43.53 C ATOM 318 C VAL 38 -30.412 -6.664 23.875 1.00 43.53 C ATOM 319 O VAL 38 -30.552 -6.031 24.919 1.00 43.53 O ATOM 320 N TYR 39 -29.446 -6.404 22.978 1.00 89.37 N ATOM 321 CA TYR 39 -28.422 -5.422 23.161 1.00 89.37 C ATOM 322 CB TYR 39 -27.396 -5.433 22.018 1.00 89.37 C ATOM 323 CG TYR 39 -26.801 -6.793 21.914 1.00 89.37 C ATOM 324 CD1 TYR 39 -27.416 -7.760 21.151 1.00 89.37 C ATOM 325 CD2 TYR 39 -25.635 -7.105 22.574 1.00 89.37 C ATOM 326 CE1 TYR 39 -26.877 -9.020 21.039 1.00 89.37 C ATOM 327 CE2 TYR 39 -25.091 -8.363 22.465 1.00 89.37 C ATOM 328 CZ TYR 39 -25.709 -9.321 21.698 1.00 89.37 C ATOM 329 OH TYR 39 -25.146 -10.610 21.590 1.00 89.37 H ATOM 330 C TYR 39 -28.977 -4.032 23.169 1.00 89.37 C ATOM 331 O TYR 39 -28.603 -3.221 24.014 1.00 89.37 O ATOM 332 N GLN 40 -29.900 -3.713 22.241 1.00237.30 N ATOM 333 CA GLN 40 -30.205 -2.320 22.101 1.00237.30 C ATOM 334 CB GLN 40 -29.912 -1.798 20.686 1.00237.30 C ATOM 335 CG GLN 40 -28.424 -1.867 20.341 1.00237.30 C ATOM 336 CD GLN 40 -28.245 -1.476 18.883 1.00237.30 C ATOM 337 OE1 GLN 40 -29.212 -1.316 18.139 1.00237.30 O ATOM 338 NE2 GLN 40 -26.961 -1.326 18.462 1.00237.30 N ATOM 339 C GLN 40 -31.615 -1.971 22.430 1.00237.30 C ATOM 340 O GLN 40 -32.475 -2.826 22.641 1.00237.30 O ATOM 341 N GLY 41 -31.835 -0.644 22.536 1.00 70.33 N ATOM 342 CA GLY 41 -33.092 -0.022 22.822 1.00 70.33 C ATOM 343 C GLY 41 -33.066 0.422 24.248 1.00 70.33 C ATOM 344 O GLY 41 -33.172 -0.395 25.162 1.00 70.33 O ATOM 345 N LYS 42 -32.936 1.745 24.472 1.00 92.36 N ATOM 346 CA LYS 42 -32.926 2.260 25.808 1.00 92.36 C ATOM 347 CB LYS 42 -32.597 3.770 25.867 1.00 92.36 C ATOM 348 CG LYS 42 -31.208 4.159 25.347 1.00 92.36 C ATOM 349 CD LYS 42 -30.045 3.745 26.254 1.00 92.36 C ATOM 350 CE LYS 42 -29.763 4.760 27.369 1.00 92.36 C ATOM 351 NZ LYS 42 -28.622 4.312 28.202 1.00 92.36 N ATOM 352 C LYS 42 -34.291 2.026 26.391 1.00 92.36 C ATOM 353 O LYS 42 -34.409 1.603 27.539 1.00 92.36 O ATOM 354 N PRO 43 -35.340 2.279 25.649 1.00207.78 N ATOM 355 CA PRO 43 -36.653 2.046 26.187 1.00207.78 C ATOM 356 CD PRO 43 -35.349 3.394 24.712 1.00207.78 C ATOM 357 CB PRO 43 -37.621 2.853 25.330 1.00207.78 C ATOM 358 CG PRO 43 -36.756 4.001 24.792 1.00207.78 C ATOM 359 C PRO 43 -36.986 0.593 26.227 1.00207.78 C ATOM 360 O PRO 43 -38.037 0.243 26.761 1.00207.78 O ATOM 361 N VAL 44 -36.119 -0.275 25.677 1.00116.93 N ATOM 362 CA VAL 44 -36.499 -1.650 25.564 1.00116.93 C ATOM 363 CB VAL 44 -36.366 -2.211 24.181 1.00116.93 C ATOM 364 CG1 VAL 44 -37.311 -1.445 23.241 1.00116.93 C ATOM 365 CG2 VAL 44 -34.888 -2.157 23.775 1.00116.93 C ATOM 366 C VAL 44 -35.690 -2.515 26.476 1.00116.93 C ATOM 367 O VAL 44 -35.236 -2.091 27.538 1.00116.93 O ATOM 368 N MET 45 -35.513 -3.782 26.054 1.00121.37 N ATOM 369 CA MET 45 -34.966 -4.824 26.872 1.00121.37 C ATOM 370 CB MET 45 -34.791 -6.129 26.080 1.00121.37 C ATOM 371 CG MET 45 -36.093 -6.643 25.465 1.00121.37 C ATOM 372 SD MET 45 -35.894 -8.093 24.387 1.00121.37 S ATOM 373 CE MET 45 -37.505 -7.928 23.560 1.00121.37 C ATOM 374 C MET 45 -33.613 -4.509 27.442 1.00121.37 C ATOM 375 O MET 45 -33.498 -4.566 28.661 1.00121.37 O ATOM 376 N PRO 46 -32.587 -4.161 26.709 1.00114.91 N ATOM 377 CA PRO 46 -31.281 -4.006 27.301 1.00114.91 C ATOM 378 CD PRO 46 -32.703 -3.395 25.480 1.00114.91 C ATOM 379 CB PRO 46 -30.384 -3.509 26.183 1.00114.91 C ATOM 380 CG PRO 46 -31.357 -2.665 25.350 1.00114.91 C ATOM 381 C PRO 46 -31.254 -3.016 28.418 1.00114.91 C ATOM 382 O PRO 46 -30.524 -3.224 29.384 1.00114.91 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 92.72 50.0 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 76.71 67.6 34 100.0 34 ARMSMC SURFACE . . . . . . . . 97.39 46.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 66.77 66.7 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.15 43.8 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 89.69 41.4 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 84.61 41.2 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 88.30 44.4 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 87.33 40.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.96 40.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 70.23 42.9 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 81.77 53.8 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 67.31 45.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 127.02 0.0 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.42 25.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 94.48 14.3 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 96.43 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 88.42 25.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.52 66.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 73.52 66.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 84.26 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 73.52 66.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.54 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.54 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2439 CRMSCA SECONDARY STRUCTURE . . 7.41 17 100.0 17 CRMSCA SURFACE . . . . . . . . 8.65 29 100.0 29 CRMSCA BURIED . . . . . . . . 7.97 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.52 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 7.52 85 100.0 85 CRMSMC SURFACE . . . . . . . . 8.62 143 100.0 143 CRMSMC BURIED . . . . . . . . 8.04 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.98 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 10.88 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 11.07 84 100.0 84 CRMSSC SURFACE . . . . . . . . 10.92 127 100.0 127 CRMSSC BURIED . . . . . . . . 11.23 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.85 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 9.60 152 100.0 152 CRMSALL SURFACE . . . . . . . . 9.85 243 100.0 243 CRMSALL BURIED . . . . . . . . 9.83 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 119.751 0.861 0.872 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 117.997 0.863 0.874 17 100.0 17 ERRCA SURFACE . . . . . . . . 120.248 0.862 0.873 29 100.0 29 ERRCA BURIED . . . . . . . . 117.345 0.854 0.866 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 120.116 0.861 0.872 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 117.931 0.862 0.873 85 100.0 85 ERRMC SURFACE . . . . . . . . 120.709 0.863 0.874 143 100.0 143 ERRMC BURIED . . . . . . . . 117.288 0.849 0.862 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 117.518 0.829 0.845 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 119.626 0.836 0.850 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 118.190 0.823 0.841 84 100.0 84 ERRSC SURFACE . . . . . . . . 118.684 0.830 0.846 127 100.0 127 ERRSC BURIED . . . . . . . . 112.410 0.825 0.841 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 118.627 0.845 0.858 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 118.129 0.841 0.856 152 100.0 152 ERRALL SURFACE . . . . . . . . 119.484 0.846 0.860 243 100.0 243 ERRALL BURIED . . . . . . . . 114.698 0.837 0.851 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 4 28 35 35 DISTCA CA (P) 0.00 0.00 0.00 11.43 80.00 35 DISTCA CA (RMS) 0.00 0.00 0.00 4.04 7.10 DISTCA ALL (N) 0 0 1 33 190 296 296 DISTALL ALL (P) 0.00 0.00 0.34 11.15 64.19 296 DISTALL ALL (RMS) 0.00 0.00 2.37 4.19 7.29 DISTALL END of the results output