####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS380_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS380_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 12 - 30 4.52 10.08 LCS_AVERAGE: 51.67 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 12 - 27 1.32 11.30 LCS_AVERAGE: 36.16 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 14 - 27 0.80 11.00 LCS_AVERAGE: 25.22 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 5 16 19 3 4 5 12 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT F 13 F 13 9 16 19 3 8 13 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT H 14 H 14 14 16 19 3 9 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT Y 15 Y 15 14 16 19 8 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT T 16 T 16 14 16 19 12 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT V 17 V 17 14 16 19 12 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT T 18 T 18 14 16 19 12 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT D 19 D 19 14 16 19 12 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT I 20 I 20 14 16 19 12 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT K 21 K 21 14 16 19 12 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT D 22 D 22 14 16 19 12 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT L 23 L 23 14 16 19 12 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT T 24 T 24 14 16 19 12 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT K 25 K 25 14 16 19 12 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT L 26 L 26 14 16 19 12 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT G 27 G 27 14 16 19 12 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT A 28 A 28 4 14 19 3 4 4 5 6 7 8 10 13 15 17 18 20 20 21 22 24 25 26 26 LCS_GDT I 29 I 29 4 5 19 3 4 4 5 6 7 8 10 12 14 14 18 19 20 22 23 24 25 26 26 LCS_GDT Y 30 Y 30 4 5 19 3 4 4 4 5 6 8 10 12 14 14 15 17 19 22 22 23 25 26 26 LCS_GDT D 31 D 31 4 5 17 3 4 4 4 6 7 8 10 12 13 13 15 17 18 19 20 23 23 24 25 LCS_GDT K 32 K 32 3 4 17 3 3 3 5 5 9 11 12 13 14 15 16 17 19 19 20 23 23 24 25 LCS_GDT T 33 T 33 3 11 17 3 3 7 10 11 11 11 13 14 15 15 16 17 19 19 20 23 23 24 24 LCS_GDT K 34 K 34 3 11 17 3 3 7 10 11 11 11 13 14 15 15 16 17 19 19 20 23 23 24 25 LCS_GDT K 35 K 35 3 11 17 3 3 4 5 5 10 11 13 14 15 15 16 16 19 19 20 23 23 24 24 LCS_GDT Y 36 Y 36 5 11 17 3 4 6 10 11 11 11 13 14 15 15 18 20 20 22 23 24 25 26 26 LCS_GDT W 37 W 37 7 11 17 3 6 8 10 11 11 12 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT V 38 V 38 7 11 17 3 6 8 10 11 11 11 13 14 15 15 16 17 21 22 23 24 25 26 26 LCS_GDT Y 39 Y 39 7 11 17 4 6 8 10 11 11 11 13 14 15 15 16 17 19 19 20 23 23 24 25 LCS_GDT Q 40 Q 40 7 11 17 4 6 8 10 11 11 11 13 14 15 15 16 17 19 19 20 23 23 24 25 LCS_GDT G 41 G 41 7 11 17 4 6 8 10 11 11 11 13 14 15 15 16 17 19 19 20 23 23 26 26 LCS_GDT K 42 K 42 7 11 17 4 6 8 10 11 11 11 14 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT P 43 P 43 7 11 17 3 6 8 10 11 11 15 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT V 44 V 44 7 11 17 3 5 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 LCS_GDT M 45 M 45 5 11 17 3 5 6 8 10 11 11 13 14 15 15 16 17 19 20 21 23 23 24 25 LCS_GDT P 46 P 46 5 11 17 3 5 6 8 10 11 11 13 14 15 15 16 17 19 19 20 23 23 24 24 LCS_AVERAGE LCS_A: 37.69 ( 25.22 36.16 51.67 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 13 14 16 16 17 17 17 18 20 20 20 20 21 22 23 24 25 26 26 GDT PERCENT_AT 34.29 37.14 40.00 45.71 45.71 48.57 48.57 48.57 51.43 57.14 57.14 57.14 57.14 60.00 62.86 65.71 68.57 71.43 74.29 74.29 GDT RMS_LOCAL 0.24 0.42 0.80 1.11 1.11 1.43 1.43 1.43 2.04 2.89 2.89 2.89 2.89 3.34 3.81 4.36 4.56 5.06 5.45 5.45 GDT RMS_ALL_AT 10.86 10.93 11.00 11.11 11.11 11.22 11.22 11.22 10.96 10.36 10.36 10.36 10.36 10.27 10.07 9.78 9.76 9.54 9.44 9.44 # Checking swapping # possible swapping detected: D 19 D 19 # possible swapping detected: Y 30 Y 30 # possible swapping detected: D 31 D 31 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 3.221 0 0.647 0.818 4.447 54.167 52.714 LGA F 13 F 13 1.279 0 0.683 0.807 5.073 69.405 56.104 LGA H 14 H 14 0.582 0 0.132 0.318 1.478 90.595 86.000 LGA Y 15 Y 15 1.290 0 0.669 0.779 4.392 68.452 68.214 LGA T 16 T 16 1.736 0 0.259 1.177 3.290 75.000 68.503 LGA V 17 V 17 1.847 0 0.054 0.212 3.008 77.143 68.639 LGA T 18 T 18 0.752 0 0.036 0.102 1.162 95.238 91.905 LGA D 19 D 19 0.703 0 0.114 0.713 2.971 92.857 81.964 LGA I 20 I 20 1.346 0 0.027 1.438 4.028 83.690 71.786 LGA K 21 K 21 1.316 0 0.049 1.097 8.478 85.952 55.556 LGA D 22 D 22 0.668 0 0.044 0.199 1.573 92.857 87.202 LGA L 23 L 23 0.698 0 0.038 0.990 3.432 92.857 79.226 LGA T 24 T 24 0.361 0 0.021 1.210 2.852 100.000 87.483 LGA K 25 K 25 0.711 0 0.124 0.643 3.388 90.595 77.513 LGA L 26 L 26 1.089 0 0.144 0.275 1.947 81.548 82.679 LGA G 27 G 27 0.889 0 0.254 0.254 4.256 65.357 65.357 LGA A 28 A 28 8.188 0 0.592 0.583 10.020 7.857 6.381 LGA I 29 I 29 12.901 0 0.113 1.095 18.271 0.000 0.000 LGA Y 30 Y 30 15.702 0 0.609 1.064 27.086 0.000 0.000 LGA D 31 D 31 22.048 0 0.555 1.188 27.959 0.000 0.000 LGA K 32 K 32 22.624 0 0.545 0.920 23.097 0.000 0.000 LGA T 33 T 33 25.655 0 0.056 0.487 28.689 0.000 0.000 LGA K 34 K 34 20.820 0 0.237 0.747 25.535 0.000 0.000 LGA K 35 K 35 18.048 0 0.457 1.026 22.862 0.000 0.000 LGA Y 36 Y 36 11.169 0 0.108 1.156 17.563 0.119 0.040 LGA W 37 W 37 6.659 0 0.147 1.192 8.602 12.619 25.748 LGA V 38 V 38 11.157 0 0.631 1.191 15.476 0.119 0.068 LGA Y 39 Y 39 12.902 0 0.176 0.226 22.535 0.000 0.000 LGA Q 40 Q 40 17.371 0 0.049 1.276 20.205 0.000 0.000 LGA G 41 G 41 17.133 0 0.163 0.163 17.133 0.000 0.000 LGA K 42 K 42 10.085 0 0.206 0.802 12.472 2.500 1.481 LGA P 43 P 43 8.242 0 0.200 0.273 12.274 13.810 7.891 LGA V 44 V 44 2.452 0 0.050 1.172 6.201 36.310 52.245 LGA M 45 M 45 8.992 0 0.145 0.818 11.883 5.238 2.619 LGA P 46 P 46 12.920 0 0.053 0.072 14.873 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 8.846 8.852 9.791 39.837 36.495 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 17 1.43 49.286 46.447 1.114 LGA_LOCAL RMSD: 1.427 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.216 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 8.846 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.093055 * X + 0.654723 * Y + -0.750119 * Z + -44.411911 Y_new = 0.095901 * X + -0.755779 * Y + -0.647767 * Z + 53.298336 Z_new = -0.991032 * X + -0.011659 * Y + -0.133118 * Z + 89.443573 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.800458 1.436768 -3.054231 [DEG: 45.8629 82.3207 -174.9945 ] ZXZ: -0.858487 1.704311 -1.582560 [DEG: -49.1877 97.6498 -90.6740 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS380_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS380_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 17 1.43 46.447 8.85 REMARK ---------------------------------------------------------- MOLECULE T0548TS380_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 87 N HIS 12 -42.586 -28.094 36.668 1.00 0.00 N ATOM 88 CA HIS 12 -41.245 -28.403 37.086 1.00 0.00 C ATOM 89 ND1 HIS 12 -39.461 -30.927 38.623 1.00 0.00 N ATOM 90 CG HIS 12 -39.581 -30.318 37.393 1.00 0.00 C ATOM 91 CB HIS 12 -40.884 -29.872 36.801 1.00 0.00 C ATOM 92 NE2 HIS 12 -37.407 -30.780 37.783 1.00 0.00 N ATOM 93 CD2 HIS 12 -38.317 -30.236 36.895 1.00 0.00 C ATOM 94 CE1 HIS 12 -38.141 -31.183 38.805 1.00 0.00 C ATOM 95 C HIS 12 -40.238 -27.536 36.363 1.00 0.00 C ATOM 96 O HIS 12 -39.125 -27.334 36.841 1.00 0.00 O ATOM 97 N PHE 13 -40.626 -26.992 35.196 1.00 0.00 N ATOM 98 CA PHE 13 -39.812 -26.326 34.209 1.00 0.00 C ATOM 99 CB PHE 13 -40.448 -26.239 32.811 1.00 0.00 C ATOM 100 CG PHE 13 -40.435 -27.639 32.291 1.00 0.00 C ATOM 101 CD1 PHE 13 -39.268 -28.365 32.313 1.00 0.00 C ATOM 102 CD2 PHE 13 -41.554 -28.219 31.741 1.00 0.00 C ATOM 103 CE1 PHE 13 -39.220 -29.652 31.833 1.00 0.00 C ATOM 104 CE2 PHE 13 -41.510 -29.508 31.257 1.00 0.00 C ATOM 105 CZ PHE 13 -40.345 -30.232 31.303 1.00 0.00 C ATOM 106 C PHE 13 -39.158 -24.994 34.539 1.00 0.00 C ATOM 107 O PHE 13 -38.413 -24.502 33.699 1.00 0.00 O ATOM 108 N HIS 14 -39.488 -24.310 35.654 1.00 0.00 N ATOM 109 CA HIS 14 -38.980 -23.023 36.104 1.00 0.00 C ATOM 110 ND1 HIS 14 -37.445 -20.622 37.691 1.00 0.00 N ATOM 111 CG HIS 14 -37.988 -21.838 38.040 1.00 0.00 C ATOM 112 CB HIS 14 -37.918 -23.086 37.214 1.00 0.00 C ATOM 113 NE2 HIS 14 -38.513 -20.313 39.619 1.00 0.00 N ATOM 114 CD2 HIS 14 -38.633 -21.631 39.221 1.00 0.00 C ATOM 115 CE1 HIS 14 -37.790 -19.746 38.670 1.00 0.00 C ATOM 116 C HIS 14 -38.504 -22.123 34.991 1.00 0.00 C ATOM 117 O HIS 14 -37.392 -22.213 34.467 1.00 0.00 O ATOM 118 N TYR 15 -39.403 -21.189 34.659 1.00 0.00 N ATOM 119 CA TYR 15 -39.430 -20.243 33.584 1.00 0.00 C ATOM 120 CB TYR 15 -40.852 -19.769 33.303 1.00 0.00 C ATOM 121 CG TYR 15 -41.442 -21.098 33.011 1.00 0.00 C ATOM 122 CD1 TYR 15 -40.765 -21.906 32.135 1.00 0.00 C ATOM 123 CD2 TYR 15 -42.548 -21.592 33.661 1.00 0.00 C ATOM 124 CE1 TYR 15 -41.218 -23.159 31.820 1.00 0.00 C ATOM 125 CE2 TYR 15 -43.009 -22.850 33.348 1.00 0.00 C ATOM 126 CZ TYR 15 -42.354 -23.630 32.422 1.00 0.00 C ATOM 127 OH TYR 15 -42.813 -24.921 32.093 1.00 0.00 H ATOM 128 C TYR 15 -38.454 -19.112 33.694 1.00 0.00 C ATOM 129 O TYR 15 -38.143 -18.478 32.683 1.00 0.00 O ATOM 130 N THR 16 -37.924 -18.832 34.902 1.00 0.00 N ATOM 131 CA THR 16 -37.116 -17.661 35.105 1.00 0.00 C ATOM 132 CB THR 16 -35.916 -17.586 34.209 1.00 0.00 C ATOM 133 OG1 THR 16 -35.105 -18.740 34.368 1.00 0.00 O ATOM 134 CG2 THR 16 -35.113 -16.325 34.579 1.00 0.00 C ATOM 135 C THR 16 -37.952 -16.441 34.883 1.00 0.00 C ATOM 136 O THR 16 -38.303 -16.072 33.768 1.00 0.00 O ATOM 137 N VAL 17 -38.320 -15.803 36.012 1.00 0.00 N ATOM 138 CA VAL 17 -39.220 -14.687 36.080 1.00 0.00 C ATOM 139 CB VAL 17 -39.258 -14.067 37.443 1.00 0.00 C ATOM 140 CG1 VAL 17 -40.231 -12.881 37.419 1.00 0.00 C ATOM 141 CG2 VAL 17 -39.623 -15.159 38.460 1.00 0.00 C ATOM 142 C VAL 17 -38.768 -13.628 35.129 1.00 0.00 C ATOM 143 O VAL 17 -39.595 -12.966 34.506 1.00 0.00 O ATOM 144 N THR 18 -37.448 -13.417 35.003 1.00 0.00 N ATOM 145 CA THR 18 -36.981 -12.420 34.085 1.00 0.00 C ATOM 146 CB THR 18 -35.488 -12.263 34.110 1.00 0.00 C ATOM 147 OG1 THR 18 -35.056 -11.938 35.423 1.00 0.00 O ATOM 148 CG2 THR 18 -35.096 -11.133 33.144 1.00 0.00 C ATOM 149 C THR 18 -37.378 -12.823 32.692 1.00 0.00 C ATOM 150 O THR 18 -37.805 -11.981 31.904 1.00 0.00 O ATOM 151 N ASP 19 -37.247 -14.128 32.362 1.00 0.00 N ATOM 152 CA ASP 19 -37.527 -14.659 31.051 1.00 0.00 C ATOM 153 CB ASP 19 -37.065 -16.116 30.873 1.00 0.00 C ATOM 154 CG ASP 19 -35.546 -16.102 30.931 1.00 0.00 C ATOM 155 OD1 ASP 19 -35.012 -15.568 31.940 1.00 0.00 O ATOM 156 OD2 ASP 19 -34.904 -16.603 29.967 1.00 0.00 O ATOM 157 C ASP 19 -38.994 -14.589 30.729 1.00 0.00 C ATOM 158 O ASP 19 -39.372 -14.476 29.565 1.00 0.00 O ATOM 159 N ILE 20 -39.880 -14.749 31.725 1.00 0.00 N ATOM 160 CA ILE 20 -41.281 -14.614 31.437 1.00 0.00 C ATOM 161 CB ILE 20 -42.162 -15.088 32.568 1.00 0.00 C ATOM 162 CG2 ILE 20 -41.962 -14.144 33.760 1.00 0.00 C ATOM 163 CG1 ILE 20 -43.635 -15.236 32.135 1.00 0.00 C ATOM 164 CD1 ILE 20 -44.349 -13.926 31.805 1.00 0.00 C ATOM 165 C ILE 20 -41.580 -13.176 31.122 1.00 0.00 C ATOM 166 O ILE 20 -42.372 -12.875 30.230 1.00 0.00 O ATOM 167 N LYS 21 -40.966 -12.238 31.867 1.00 0.00 N ATOM 168 CA LYS 21 -41.231 -10.840 31.657 1.00 0.00 C ATOM 169 CB LYS 21 -40.600 -9.940 32.731 1.00 0.00 C ATOM 170 CG LYS 21 -41.167 -10.256 34.113 1.00 0.00 C ATOM 171 CD LYS 21 -40.476 -9.543 35.273 1.00 0.00 C ATOM 172 CE LYS 21 -40.882 -10.110 36.633 1.00 0.00 C ATOM 173 NZ LYS 21 -42.288 -10.573 36.584 1.00 0.00 N ATOM 174 C LYS 21 -40.737 -10.415 30.315 1.00 0.00 C ATOM 175 O LYS 21 -41.369 -9.600 29.646 1.00 0.00 O ATOM 176 N ASP 22 -39.569 -10.931 29.899 1.00 0.00 N ATOM 177 CA ASP 22 -39.029 -10.597 28.611 1.00 0.00 C ATOM 178 CB ASP 22 -37.603 -11.117 28.406 1.00 0.00 C ATOM 179 CG ASP 22 -36.712 -10.307 29.331 1.00 0.00 C ATOM 180 OD1 ASP 22 -37.014 -9.105 29.549 1.00 0.00 O ATOM 181 OD2 ASP 22 -35.720 -10.884 29.844 1.00 0.00 O ATOM 182 C ASP 22 -39.918 -11.178 27.555 1.00 0.00 C ATOM 183 O ASP 22 -40.113 -10.575 26.503 1.00 0.00 O ATOM 184 N LEU 23 -40.480 -12.375 27.811 1.00 0.00 N ATOM 185 CA LEU 23 -41.367 -13.017 26.882 1.00 0.00 C ATOM 186 CB LEU 23 -41.848 -14.378 27.447 1.00 0.00 C ATOM 187 CG LEU 23 -42.987 -15.126 26.711 1.00 0.00 C ATOM 188 CD1 LEU 23 -43.119 -16.547 27.264 1.00 0.00 C ATOM 189 CD2 LEU 23 -44.354 -14.432 26.847 1.00 0.00 C ATOM 190 C LEU 23 -42.560 -12.132 26.676 1.00 0.00 C ATOM 191 O LEU 23 -43.006 -11.927 25.547 1.00 0.00 O ATOM 192 N THR 24 -43.114 -11.580 27.771 1.00 0.00 N ATOM 193 CA THR 24 -44.320 -10.811 27.668 1.00 0.00 C ATOM 194 CB THR 24 -44.901 -10.425 29.001 1.00 0.00 C ATOM 195 OG1 THR 24 -46.248 -10.011 28.835 1.00 0.00 O ATOM 196 CG2 THR 24 -44.090 -9.277 29.617 1.00 0.00 C ATOM 197 C THR 24 -44.070 -9.570 26.872 1.00 0.00 C ATOM 198 O THR 24 -44.913 -9.149 26.083 1.00 0.00 O ATOM 199 N LYS 25 -42.895 -8.953 27.075 1.00 0.00 N ATOM 200 CA LYS 25 -42.477 -7.762 26.398 1.00 0.00 C ATOM 201 CB LYS 25 -41.082 -7.351 26.890 1.00 0.00 C ATOM 202 CG LYS 25 -41.082 -7.070 28.396 1.00 0.00 C ATOM 203 CD LYS 25 -39.724 -7.259 29.076 1.00 0.00 C ATOM 204 CE LYS 25 -38.786 -6.056 28.994 1.00 0.00 C ATOM 205 NZ LYS 25 -37.544 -6.348 29.744 1.00 0.00 N ATOM 206 C LYS 25 -42.400 -8.095 24.945 1.00 0.00 C ATOM 207 O LYS 25 -42.825 -7.321 24.090 1.00 0.00 O ATOM 208 N LEU 26 -41.885 -9.301 24.651 1.00 0.00 N ATOM 209 CA LEU 26 -41.690 -9.827 23.332 1.00 0.00 C ATOM 210 CB LEU 26 -41.241 -11.286 23.412 1.00 0.00 C ATOM 211 CG LEU 26 -41.386 -12.035 22.081 1.00 0.00 C ATOM 212 CD1 LEU 26 -40.290 -11.663 21.075 1.00 0.00 C ATOM 213 CD2 LEU 26 -41.573 -13.535 22.328 1.00 0.00 C ATOM 214 C LEU 26 -42.994 -9.879 22.602 1.00 0.00 C ATOM 215 O LEU 26 -43.098 -9.438 21.458 1.00 0.00 O ATOM 216 N GLY 27 -44.039 -10.401 23.261 1.00 0.00 N ATOM 217 CA GLY 27 -45.301 -10.586 22.608 1.00 0.00 C ATOM 218 C GLY 27 -45.811 -9.255 22.152 1.00 0.00 C ATOM 219 O GLY 27 -46.509 -9.164 21.141 1.00 0.00 O ATOM 220 N ALA 28 -45.550 -8.202 22.950 1.00 0.00 N ATOM 221 CA ALA 28 -45.953 -6.866 22.614 1.00 0.00 C ATOM 222 CB ALA 28 -45.701 -5.866 23.755 1.00 0.00 C ATOM 223 C ALA 28 -45.192 -6.391 21.413 1.00 0.00 C ATOM 224 O ALA 28 -45.747 -5.775 20.513 1.00 0.00 O ATOM 225 N ILE 29 -43.873 -6.634 21.390 1.00 0.00 N ATOM 226 CA ILE 29 -42.990 -6.304 20.310 1.00 0.00 C ATOM 227 CB ILE 29 -42.548 -4.869 20.321 1.00 0.00 C ATOM 228 CG2 ILE 29 -41.448 -4.694 19.262 1.00 0.00 C ATOM 229 CG1 ILE 29 -43.753 -3.934 20.114 1.00 0.00 C ATOM 230 CD1 ILE 29 -43.450 -2.470 20.423 1.00 0.00 C ATOM 231 C ILE 29 -41.803 -7.161 20.607 1.00 0.00 C ATOM 232 O ILE 29 -41.253 -7.079 21.702 1.00 0.00 O ATOM 233 N TYR 30 -41.349 -7.984 19.644 1.00 0.00 N ATOM 234 CA TYR 30 -40.316 -8.942 19.925 1.00 0.00 C ATOM 235 CB TYR 30 -40.012 -9.873 18.733 1.00 0.00 C ATOM 236 CG TYR 30 -39.386 -9.086 17.639 1.00 0.00 C ATOM 237 CD1 TYR 30 -40.144 -8.265 16.837 1.00 0.00 C ATOM 238 CD2 TYR 30 -38.029 -9.158 17.433 1.00 0.00 C ATOM 239 CE1 TYR 30 -39.547 -7.535 15.835 1.00 0.00 C ATOM 240 CE2 TYR 30 -37.429 -8.432 16.434 1.00 0.00 C ATOM 241 CZ TYR 30 -38.190 -7.618 15.632 1.00 0.00 C ATOM 242 OH TYR 30 -37.578 -6.869 14.604 1.00 0.00 H ATOM 243 C TYR 30 -39.094 -8.206 20.366 1.00 0.00 C ATOM 244 O TYR 30 -38.341 -8.683 21.206 1.00 0.00 O ATOM 245 N ASP 31 -38.871 -6.997 19.842 1.00 0.00 N ATOM 246 CA ASP 31 -37.683 -6.278 20.183 1.00 0.00 C ATOM 247 CB ASP 31 -37.580 -4.908 19.493 1.00 0.00 C ATOM 248 CG ASP 31 -36.110 -4.522 19.536 1.00 0.00 C ATOM 249 OD1 ASP 31 -35.305 -5.359 20.024 1.00 0.00 O ATOM 250 OD2 ASP 31 -35.770 -3.401 19.073 1.00 0.00 O ATOM 251 C ASP 31 -37.635 -6.058 21.667 1.00 0.00 C ATOM 252 O ASP 31 -36.562 -5.778 22.199 1.00 0.00 O ATOM 253 N LYS 32 -38.790 -6.124 22.370 1.00 0.00 N ATOM 254 CA LYS 32 -38.788 -5.901 23.793 1.00 0.00 C ATOM 255 CB LYS 32 -40.197 -5.697 24.378 1.00 0.00 C ATOM 256 CG LYS 32 -40.898 -4.423 23.908 1.00 0.00 C ATOM 257 CD LYS 32 -42.398 -4.426 24.211 1.00 0.00 C ATOM 258 CE LYS 32 -43.085 -3.085 23.952 1.00 0.00 C ATOM 259 NZ LYS 32 -42.736 -2.124 25.024 1.00 0.00 N ATOM 260 C LYS 32 -38.189 -7.075 24.524 1.00 0.00 C ATOM 261 O LYS 32 -38.897 -7.865 25.146 1.00 0.00 O ATOM 262 N THR 33 -36.849 -7.192 24.434 1.00 0.00 N ATOM 263 CA THR 33 -35.943 -8.085 25.119 1.00 0.00 C ATOM 264 CB THR 33 -36.000 -7.963 26.618 1.00 0.00 C ATOM 265 OG1 THR 33 -37.284 -8.313 27.107 1.00 0.00 O ATOM 266 CG2 THR 33 -35.667 -6.510 26.996 1.00 0.00 C ATOM 267 C THR 33 -36.116 -9.521 24.729 1.00 0.00 C ATOM 268 O THR 33 -35.132 -10.248 24.622 1.00 0.00 O ATOM 269 N LYS 34 -37.359 -9.953 24.460 1.00 0.00 N ATOM 270 CA LYS 34 -37.668 -11.270 23.976 1.00 0.00 C ATOM 271 CB LYS 34 -36.734 -11.712 22.836 1.00 0.00 C ATOM 272 CG LYS 34 -36.889 -10.961 21.524 1.00 0.00 C ATOM 273 CD LYS 34 -35.743 -11.171 20.536 1.00 0.00 C ATOM 274 CE LYS 34 -35.929 -10.395 19.230 1.00 0.00 C ATOM 275 NZ LYS 34 -36.001 -8.940 19.505 1.00 0.00 N ATOM 276 C LYS 34 -37.482 -12.333 25.004 1.00 0.00 C ATOM 277 O LYS 34 -38.458 -13.037 25.268 1.00 0.00 O ATOM 278 N LYS 35 -36.276 -12.360 25.646 1.00 0.00 N ATOM 279 CA LYS 35 -35.719 -13.322 26.575 1.00 0.00 C ATOM 280 CB LYS 35 -34.964 -12.631 27.724 1.00 0.00 C ATOM 281 CG LYS 35 -34.105 -13.561 28.579 1.00 0.00 C ATOM 282 CD LYS 35 -33.113 -12.794 29.456 1.00 0.00 C ATOM 283 CE LYS 35 -33.524 -12.693 30.923 1.00 0.00 C ATOM 284 NZ LYS 35 -32.956 -13.834 31.675 1.00 0.00 N ATOM 285 C LYS 35 -36.849 -14.094 27.136 1.00 0.00 C ATOM 286 O LYS 35 -37.326 -13.838 28.236 1.00 0.00 O ATOM 287 N TYR 36 -37.264 -15.091 26.336 1.00 0.00 N ATOM 288 CA TYR 36 -38.506 -15.798 26.413 1.00 0.00 C ATOM 289 CB TYR 36 -38.781 -16.552 25.111 1.00 0.00 C ATOM 290 CG TYR 36 -38.561 -15.836 23.802 1.00 0.00 C ATOM 291 CD1 TYR 36 -37.374 -15.188 23.526 1.00 0.00 C ATOM 292 CD2 TYR 36 -39.525 -15.849 22.823 1.00 0.00 C ATOM 293 CE1 TYR 36 -37.146 -14.575 22.318 1.00 0.00 C ATOM 294 CE2 TYR 36 -39.300 -15.236 21.608 1.00 0.00 C ATOM 295 CZ TYR 36 -38.113 -14.600 21.348 1.00 0.00 C ATOM 296 OH TYR 36 -37.892 -13.978 20.101 1.00 0.00 H ATOM 297 C TYR 36 -38.318 -16.878 27.435 1.00 0.00 C ATOM 298 O TYR 36 -37.188 -17.351 27.564 1.00 0.00 O ATOM 299 N TRP 37 -39.395 -17.305 28.161 1.00 0.00 N ATOM 300 CA TRP 37 -39.158 -18.244 29.233 1.00 0.00 C ATOM 301 CB TRP 37 -40.295 -18.570 30.240 1.00 0.00 C ATOM 302 CG TRP 37 -41.702 -18.928 29.814 1.00 0.00 C ATOM 303 CD2 TRP 37 -42.184 -20.246 29.494 1.00 0.00 C ATOM 304 CD1 TRP 37 -42.781 -18.097 29.746 1.00 0.00 C ATOM 305 NE1 TRP 37 -43.910 -18.813 29.429 1.00 0.00 N ATOM 306 CE2 TRP 37 -43.558 -20.138 29.266 1.00 0.00 C ATOM 307 CE3 TRP 37 -41.540 -21.440 29.359 1.00 0.00 C ATOM 308 CZ2 TRP 37 -44.305 -21.226 28.913 1.00 0.00 C ATOM 309 CZ3 TRP 37 -42.302 -22.541 29.042 1.00 0.00 C ATOM 310 CH2 TRP 37 -43.661 -22.439 28.824 1.00 0.00 H ATOM 311 C TRP 37 -38.406 -19.454 28.765 1.00 0.00 C ATOM 312 O TRP 37 -38.835 -20.234 27.919 1.00 0.00 O ATOM 313 N VAL 38 -37.246 -19.551 29.439 1.00 0.00 N ATOM 314 CA VAL 38 -35.953 -20.144 29.235 1.00 0.00 C ATOM 315 CB VAL 38 -34.930 -19.417 30.069 1.00 0.00 C ATOM 316 CG1 VAL 38 -34.944 -20.000 31.489 1.00 0.00 C ATOM 317 CG2 VAL 38 -33.572 -19.386 29.343 1.00 0.00 C ATOM 318 C VAL 38 -35.681 -21.624 29.328 1.00 0.00 C ATOM 319 O VAL 38 -34.501 -21.950 29.309 1.00 0.00 O ATOM 320 N TYR 39 -36.632 -22.558 29.524 1.00 0.00 N ATOM 321 CA TYR 39 -36.230 -23.921 29.847 1.00 0.00 C ATOM 322 CB TYR 39 -37.445 -24.863 29.939 1.00 0.00 C ATOM 323 CG TYR 39 -37.024 -26.109 30.633 1.00 0.00 C ATOM 324 CD1 TYR 39 -36.773 -26.074 31.986 1.00 0.00 C ATOM 325 CD2 TYR 39 -36.911 -27.304 29.963 1.00 0.00 C ATOM 326 CE1 TYR 39 -36.390 -27.205 32.663 1.00 0.00 C ATOM 327 CE2 TYR 39 -36.529 -28.441 30.636 1.00 0.00 C ATOM 328 CZ TYR 39 -36.265 -28.391 31.984 1.00 0.00 C ATOM 329 OH TYR 39 -35.872 -29.558 32.673 1.00 0.00 H ATOM 330 C TYR 39 -35.206 -24.531 28.909 1.00 0.00 C ATOM 331 O TYR 39 -35.519 -24.988 27.815 1.00 0.00 O ATOM 332 N GLN 40 -33.967 -24.694 29.432 1.00 0.00 N ATOM 333 CA GLN 40 -32.815 -25.200 28.731 1.00 0.00 C ATOM 334 CB GLN 40 -33.109 -26.531 28.017 1.00 0.00 C ATOM 335 CG GLN 40 -33.680 -27.603 28.945 1.00 0.00 C ATOM 336 CD GLN 40 -32.669 -27.835 30.051 1.00 0.00 C ATOM 337 OE1 GLN 40 -33.023 -28.197 31.170 1.00 0.00 O ATOM 338 NE2 GLN 40 -31.367 -27.610 29.729 1.00 0.00 N ATOM 339 C GLN 40 -32.353 -24.225 27.685 1.00 0.00 C ATOM 340 O GLN 40 -31.822 -24.630 26.653 1.00 0.00 O ATOM 341 N GLY 41 -32.495 -22.912 27.965 1.00 0.00 N ATOM 342 CA GLY 41 -32.122 -21.852 27.068 1.00 0.00 C ATOM 343 C GLY 41 -33.103 -21.846 25.941 1.00 0.00 C ATOM 344 O GLY 41 -32.724 -21.619 24.793 1.00 0.00 O ATOM 345 N LYS 42 -34.396 -22.099 26.241 1.00 0.00 N ATOM 346 CA LYS 42 -35.354 -22.210 25.178 1.00 0.00 C ATOM 347 CB LYS 42 -35.934 -23.625 25.081 1.00 0.00 C ATOM 348 CG LYS 42 -34.849 -24.627 24.684 1.00 0.00 C ATOM 349 CD LYS 42 -35.211 -26.087 24.940 1.00 0.00 C ATOM 350 CE LYS 42 -34.150 -27.060 24.422 1.00 0.00 C ATOM 351 NZ LYS 42 -32.796 -26.558 24.749 1.00 0.00 N ATOM 352 C LYS 42 -36.471 -21.244 25.397 1.00 0.00 C ATOM 353 O LYS 42 -37.367 -21.415 26.222 1.00 0.00 O ATOM 354 N PRO 43 -36.376 -20.225 24.607 1.00 0.00 N ATOM 355 CA PRO 43 -37.276 -19.105 24.655 1.00 0.00 C ATOM 356 CD PRO 43 -35.050 -19.879 24.119 1.00 0.00 C ATOM 357 CB PRO 43 -36.573 -18.081 23.762 1.00 0.00 C ATOM 358 CG PRO 43 -35.078 -18.375 23.877 1.00 0.00 C ATOM 359 C PRO 43 -38.709 -19.368 24.253 1.00 0.00 C ATOM 360 O PRO 43 -38.956 -19.487 23.054 1.00 0.00 O ATOM 361 N VAL 44 -39.692 -19.381 25.187 1.00 0.00 N ATOM 362 CA VAL 44 -41.028 -19.514 24.676 1.00 0.00 C ATOM 363 CB VAL 44 -42.072 -20.178 25.520 1.00 0.00 C ATOM 364 CG1 VAL 44 -41.714 -21.633 25.807 1.00 0.00 C ATOM 365 CG2 VAL 44 -42.286 -19.314 26.741 1.00 0.00 C ATOM 366 C VAL 44 -41.553 -18.143 24.409 1.00 0.00 C ATOM 367 O VAL 44 -41.414 -17.228 25.223 1.00 0.00 O ATOM 368 N MET 45 -42.209 -17.995 23.245 1.00 0.00 N ATOM 369 CA MET 45 -42.737 -16.733 22.821 1.00 0.00 C ATOM 370 CB MET 45 -42.291 -16.333 21.401 1.00 0.00 C ATOM 371 CG MET 45 -42.683 -17.344 20.321 1.00 0.00 C ATOM 372 SD MET 45 -41.699 -18.870 20.310 1.00 0.00 S ATOM 373 CE MET 45 -40.472 -18.252 19.120 1.00 0.00 C ATOM 374 C MET 45 -44.240 -16.793 22.810 1.00 0.00 C ATOM 375 O MET 45 -44.862 -17.852 22.731 1.00 0.00 O ATOM 376 N PRO 46 -44.815 -15.617 22.881 1.00 0.00 N ATOM 377 CA PRO 46 -46.246 -15.449 22.865 1.00 0.00 C ATOM 378 CD PRO 46 -44.155 -14.520 23.572 1.00 0.00 C ATOM 379 CB PRO 46 -46.494 -13.978 23.186 1.00 0.00 C ATOM 380 CG PRO 46 -45.285 -13.592 24.054 1.00 0.00 C ATOM 381 C PRO 46 -46.802 -15.904 21.554 1.00 0.00 C ATOM 382 O PRO 46 -46.076 -15.920 20.564 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 72.71 58.8 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 49.36 73.5 34 100.0 34 ARMSMC SURFACE . . . . . . . . 70.95 60.7 56 100.0 56 ARMSMC BURIED . . . . . . . . 80.39 50.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.93 46.9 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 78.30 48.3 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 83.78 41.2 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 74.80 51.9 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 98.29 20.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.74 52.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 69.67 47.6 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 64.97 69.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 59.01 54.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 102.40 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 66.64 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 33.22 71.4 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 21.24 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 66.64 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 96.73 16.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 96.73 16.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 60.49 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 96.73 16.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.85 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.85 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2527 CRMSCA SECONDARY STRUCTURE . . 7.03 17 100.0 17 CRMSCA SURFACE . . . . . . . . 9.20 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.87 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.97 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 7.37 85 100.0 85 CRMSMC SURFACE . . . . . . . . 9.31 143 100.0 143 CRMSMC BURIED . . . . . . . . 7.11 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.68 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 10.65 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 9.92 84 100.0 84 CRMSSC SURFACE . . . . . . . . 11.26 127 100.0 127 CRMSSC BURIED . . . . . . . . 7.64 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.86 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 8.85 152 100.0 152 CRMSALL SURFACE . . . . . . . . 10.32 243 100.0 243 CRMSALL BURIED . . . . . . . . 7.38 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.100 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 6.646 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 8.424 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 6.533 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.209 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 6.903 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 8.516 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 6.744 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.698 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 9.581 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 8.973 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 10.263 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 7.225 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.951 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 8.022 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 9.379 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 6.989 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 1 7 23 35 35 DISTCA CA (P) 0.00 2.86 2.86 20.00 65.71 35 DISTCA CA (RMS) 0.00 1.97 1.97 4.06 6.06 DISTCA ALL (N) 0 3 5 48 189 296 296 DISTALL ALL (P) 0.00 1.01 1.69 16.22 63.85 296 DISTALL ALL (RMS) 0.00 1.96 2.27 4.12 6.58 DISTALL END of the results output