####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 362), selected 35 , name T0548TS366_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS366_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 30 16 - 45 4.82 9.50 LONGEST_CONTINUOUS_SEGMENT: 30 17 - 46 4.81 9.97 LCS_AVERAGE: 82.37 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 16 - 29 1.83 11.95 LCS_AVERAGE: 27.18 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 16 - 27 0.71 12.62 LCS_AVERAGE: 20.24 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 5 17 0 3 4 5 6 6 6 6 6 9 12 14 15 16 16 16 17 17 17 17 LCS_GDT F 13 F 13 4 5 17 0 4 4 5 6 6 8 9 12 13 14 15 15 16 16 16 17 17 17 17 LCS_GDT H 14 H 14 4 5 18 1 4 4 5 6 6 8 10 13 14 14 15 16 16 16 16 18 18 21 21 LCS_GDT Y 15 Y 15 4 13 27 0 4 4 6 10 11 12 13 13 14 15 15 16 17 21 25 27 28 30 30 LCS_GDT T 16 T 16 12 14 30 8 11 12 12 13 13 14 15 16 18 20 23 26 26 28 29 29 30 30 30 LCS_GDT V 17 V 17 12 14 30 8 11 12 12 13 13 14 15 18 19 23 25 26 26 28 29 30 30 30 30 LCS_GDT T 18 T 18 12 14 30 8 11 12 12 13 13 14 16 18 21 24 25 26 27 28 29 30 30 30 30 LCS_GDT D 19 D 19 12 14 30 8 11 12 12 13 13 14 16 18 21 24 25 26 27 28 29 30 30 30 30 LCS_GDT I 20 I 20 12 14 30 8 11 12 12 13 13 14 16 18 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT K 21 K 21 12 14 30 8 11 12 12 13 13 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT D 22 D 22 12 14 30 8 11 12 12 13 13 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT L 23 L 23 12 14 30 8 11 12 12 13 13 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT T 24 T 24 12 14 30 8 11 12 12 13 13 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT K 25 K 25 12 14 30 7 11 12 12 13 13 14 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT L 26 L 26 12 14 30 4 11 12 12 13 13 14 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT G 27 G 27 12 14 30 3 7 12 12 13 13 14 16 18 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT A 28 A 28 9 14 30 3 4 8 12 13 13 14 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT I 29 I 29 5 14 30 3 4 6 9 11 13 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT Y 30 Y 30 5 6 30 3 4 5 5 9 12 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT D 31 D 31 5 6 30 3 4 5 7 11 12 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT K 32 K 32 5 6 30 3 4 7 9 11 12 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT T 33 T 33 5 6 30 3 4 6 9 11 12 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT K 34 K 34 3 7 30 3 3 4 5 8 10 14 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT K 35 K 35 4 7 30 3 3 7 9 11 12 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT Y 36 Y 36 4 7 30 3 4 7 9 11 12 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT W 37 W 37 4 7 30 3 3 4 7 8 12 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT V 38 V 38 4 7 30 3 4 7 9 11 12 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT Y 39 Y 39 3 7 30 3 3 4 7 7 11 13 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT Q 40 Q 40 4 7 30 3 3 4 7 8 12 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT G 41 G 41 4 7 30 3 4 7 9 11 12 15 17 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT K 42 K 42 5 7 30 4 4 5 7 8 9 11 16 18 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT P 43 P 43 5 7 30 4 4 5 7 8 9 11 11 15 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT V 44 V 44 5 5 30 4 4 5 5 6 8 13 16 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT M 45 M 45 5 5 30 4 4 5 5 7 11 13 16 20 22 24 25 26 27 28 29 30 30 30 30 LCS_GDT P 46 P 46 5 5 30 0 3 5 5 7 11 13 16 19 22 24 25 26 27 27 29 30 30 30 30 LCS_AVERAGE LCS_A: 43.27 ( 20.24 27.18 82.37 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 11 12 12 13 13 15 17 20 22 24 25 26 27 28 29 30 30 30 30 GDT PERCENT_AT 22.86 31.43 34.29 34.29 37.14 37.14 42.86 48.57 57.14 62.86 68.57 71.43 74.29 77.14 80.00 82.86 85.71 85.71 85.71 85.71 GDT RMS_LOCAL 0.28 0.44 0.71 0.71 1.04 1.04 2.41 2.72 3.10 3.38 3.65 3.78 3.96 4.14 4.30 4.54 4.81 4.82 4.81 4.81 GDT RMS_ALL_AT 13.46 12.99 12.62 12.62 12.30 12.30 10.29 10.23 10.55 10.11 9.65 10.61 11.37 9.99 10.07 9.76 9.97 9.50 9.97 9.97 # Checking swapping # possible swapping detected: Y 15 Y 15 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 34.100 0 0.636 1.567 36.448 0.000 0.000 LGA F 13 F 13 28.071 0 0.521 1.099 32.065 0.000 0.000 LGA H 14 H 14 23.781 0 0.111 0.546 25.406 0.000 0.000 LGA Y 15 Y 15 16.828 0 0.590 0.800 24.713 0.000 0.000 LGA T 16 T 16 11.973 0 0.570 1.422 13.892 0.357 0.204 LGA V 17 V 17 9.920 0 0.048 0.113 11.992 3.333 1.905 LGA T 18 T 18 7.678 0 0.018 0.130 9.990 13.333 9.796 LGA D 19 D 19 6.507 0 0.054 1.183 10.441 20.476 11.190 LGA I 20 I 20 5.094 0 0.035 0.064 8.660 39.524 27.619 LGA K 21 K 21 3.203 0 0.048 0.957 7.771 59.762 36.243 LGA D 22 D 22 0.724 0 0.042 0.108 2.933 73.333 70.119 LGA L 23 L 23 3.500 0 0.036 1.363 8.134 48.810 37.560 LGA T 24 T 24 1.979 0 0.034 0.052 4.528 56.786 68.776 LGA K 25 K 25 3.768 0 0.095 0.574 5.825 38.333 34.233 LGA L 26 L 26 5.627 0 0.053 0.093 8.316 20.714 15.774 LGA G 27 G 27 6.885 0 0.096 0.096 6.998 16.310 16.310 LGA A 28 A 28 4.765 0 0.645 0.599 5.017 39.048 36.476 LGA I 29 I 29 1.900 0 0.604 1.524 7.593 59.881 47.024 LGA Y 30 Y 30 3.281 0 0.118 1.260 15.960 61.190 22.738 LGA D 31 D 31 2.540 0 0.182 1.299 8.305 52.619 32.024 LGA K 32 K 32 2.579 0 0.386 1.363 11.569 71.190 37.143 LGA T 33 T 33 1.194 0 0.643 0.899 4.265 67.738 62.517 LGA K 34 K 34 4.416 0 0.201 0.520 15.799 48.571 23.386 LGA K 35 K 35 2.187 0 0.640 0.956 7.705 58.452 40.106 LGA Y 36 Y 36 1.727 0 0.076 0.230 11.156 69.286 37.619 LGA W 37 W 37 3.381 0 0.152 1.283 13.510 63.214 20.068 LGA V 38 V 38 1.270 0 0.091 0.181 5.878 65.595 52.925 LGA Y 39 Y 39 4.704 0 0.622 1.454 15.030 36.786 13.452 LGA Q 40 Q 40 3.594 0 0.391 1.396 8.621 48.452 32.751 LGA G 41 G 41 1.499 0 0.078 0.078 3.672 65.833 65.833 LGA K 42 K 42 5.440 0 0.590 0.697 13.484 27.024 15.079 LGA P 43 P 43 6.048 0 0.102 0.139 8.421 26.786 19.320 LGA V 44 V 44 6.166 0 0.177 0.234 10.203 21.548 12.925 LGA M 45 M 45 6.794 0 0.597 0.819 11.614 13.452 7.560 LGA P 46 P 46 9.603 0 0.664 0.581 11.483 2.976 1.769 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 8.736 8.568 10.300 36.878 26.013 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 17 2.72 49.286 44.465 0.603 LGA_LOCAL RMSD: 2.717 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.227 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 8.736 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.977552 * X + -0.028589 * Y + 0.208746 * Z + -20.606216 Y_new = 0.005370 * X + 0.993810 * Y + 0.110959 * Z + -67.193504 Z_new = -0.210626 * X + -0.107348 * Y + 0.971655 * Z + 73.608940 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.005493 0.212216 -0.110033 [DEG: 0.3147 12.1591 -6.3044 ] ZXZ: 2.059365 0.238664 -2.042141 [DEG: 117.9929 13.6744 -117.0061 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS366_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS366_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 17 2.72 44.465 8.74 REMARK ---------------------------------------------------------- MOLECULE T0548TS366_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 1hz4_A ATOM 106 N HIS 12 -33.909 3.310 29.536 1.00 50.00 N ATOM 107 CA HIS 12 -34.162 3.844 30.844 1.00 50.00 C ATOM 108 C HIS 12 -33.315 3.115 31.837 1.00 50.00 C ATOM 109 O HIS 12 -33.012 3.637 32.909 1.00 50.00 O ATOM 110 H HIS 12 -34.541 2.823 29.119 1.00 50.00 H ATOM 111 CB HIS 12 -35.648 3.728 31.192 1.00 50.00 C ATOM 112 CG HIS 12 -36.528 4.634 30.390 1.00 50.00 C ATOM 113 HD1 HIS 12 -38.389 3.840 30.789 1.00 50.00 H ATOM 114 ND1 HIS 12 -37.898 4.491 30.342 1.00 50.00 N ATOM 115 CE1 HIS 12 -38.411 5.446 29.545 1.00 50.00 C ATOM 116 CD2 HIS 12 -36.320 5.785 29.523 1.00 50.00 C ATOM 117 NE2 HIS 12 -37.469 6.225 29.050 1.00 50.00 N ATOM 118 N PHE 13 -32.904 1.880 31.503 1.00 50.00 N ATOM 119 CA PHE 13 -32.187 1.048 32.422 1.00 50.00 C ATOM 120 C PHE 13 -33.098 0.681 33.546 1.00 50.00 C ATOM 121 O PHE 13 -32.655 0.410 34.662 1.00 50.00 O ATOM 122 H PHE 13 -33.091 1.579 30.676 1.00 50.00 H ATOM 123 CB PHE 13 -30.935 1.767 32.930 1.00 50.00 C ATOM 124 CG PHE 13 -29.999 2.199 31.839 1.00 50.00 C ATOM 125 CZ PHE 13 -28.261 2.989 29.818 1.00 50.00 C ATOM 126 CD1 PHE 13 -29.914 3.528 31.464 1.00 50.00 C ATOM 127 CE1 PHE 13 -29.052 3.924 30.460 1.00 50.00 C ATOM 128 CD2 PHE 13 -29.201 1.275 31.187 1.00 50.00 C ATOM 129 CE2 PHE 13 -28.338 1.671 30.183 1.00 50.00 C ATOM 130 N HIS 14 -34.417 0.653 33.260 1.00 50.00 N ATOM 131 CA HIS 14 -35.338 0.168 34.243 1.00 50.00 C ATOM 132 C HIS 14 -35.393 -1.308 34.017 1.00 50.00 C ATOM 133 O HIS 14 -36.122 -1.803 33.158 1.00 50.00 O ATOM 134 H HIS 14 -34.720 0.936 32.461 1.00 50.00 H ATOM 135 CB HIS 14 -36.695 0.858 34.091 1.00 50.00 C ATOM 136 CG HIS 14 -37.678 0.500 35.164 1.00 50.00 C ATOM 137 HD1 HIS 14 -39.438 1.189 34.337 1.00 50.00 H ATOM 138 ND1 HIS 14 -39.024 0.771 35.059 1.00 50.00 N ATOM 139 CE1 HIS 14 -39.646 0.336 36.169 1.00 50.00 C ATOM 140 CD2 HIS 14 -37.604 -0.144 36.467 1.00 50.00 C ATOM 141 NE2 HIS 14 -38.799 -0.214 37.018 1.00 50.00 N ATOM 142 N TYR 15 -34.607 -2.046 34.815 1.00 50.00 N ATOM 143 CA TYR 15 -34.433 -3.458 34.655 1.00 50.00 C ATOM 144 C TYR 15 -35.708 -4.200 34.885 1.00 50.00 C ATOM 145 O TYR 15 -36.020 -5.134 34.151 1.00 50.00 O ATOM 146 H TYR 15 -34.179 -1.612 35.477 1.00 50.00 H ATOM 147 CB TYR 15 -33.353 -3.976 35.607 1.00 50.00 C ATOM 148 CG TYR 15 -31.947 -3.589 35.206 1.00 50.00 C ATOM 149 HH TYR 15 -27.741 -2.061 34.722 1.00 50.00 H ATOM 150 OH TYR 15 -28.078 -2.521 34.118 1.00 50.00 O ATOM 151 CZ TYR 15 -29.358 -2.875 34.477 1.00 50.00 C ATOM 152 CD1 TYR 15 -31.156 -2.814 36.044 1.00 50.00 C ATOM 153 CE1 TYR 15 -29.869 -2.457 35.686 1.00 50.00 C ATOM 154 CD2 TYR 15 -31.415 -4.003 33.992 1.00 50.00 C ATOM 155 CE2 TYR 15 -30.131 -3.655 33.617 1.00 50.00 C ATOM 156 N THR 16 -36.488 -3.803 35.903 1.00 50.00 N ATOM 157 CA THR 16 -37.650 -4.565 36.265 1.00 50.00 C ATOM 158 C THR 16 -38.585 -4.674 35.099 1.00 50.00 C ATOM 159 O THR 16 -39.096 -5.757 34.815 1.00 50.00 O ATOM 160 H THR 16 -36.280 -3.055 36.358 1.00 50.00 H ATOM 161 CB THR 16 -38.384 -3.939 37.466 1.00 50.00 C ATOM 162 HG1 THR 16 -36.839 -3.493 38.439 1.00 50.00 H ATOM 163 OG1 THR 16 -37.520 -3.937 38.609 1.00 50.00 O ATOM 164 CG2 THR 16 -39.634 -4.738 37.802 1.00 50.00 C ATOM 165 N VAL 17 -38.853 -3.556 34.398 1.00 50.00 N ATOM 166 CA VAL 17 -39.776 -3.615 33.300 1.00 50.00 C ATOM 167 C VAL 17 -39.202 -4.437 32.187 1.00 50.00 C ATOM 168 O VAL 17 -39.919 -5.191 31.534 1.00 50.00 O ATOM 169 H VAL 17 -38.459 -2.776 34.614 1.00 50.00 H ATOM 170 CB VAL 17 -40.139 -2.207 32.792 1.00 50.00 C ATOM 171 CG1 VAL 17 -40.973 -2.298 31.524 1.00 50.00 C ATOM 172 CG2 VAL 17 -40.880 -1.428 33.867 1.00 50.00 C ATOM 173 N THR 18 -37.890 -4.315 31.916 1.00 50.00 N ATOM 174 CA THR 18 -37.358 -5.051 30.806 1.00 50.00 C ATOM 175 C THR 18 -37.468 -6.528 31.055 1.00 50.00 C ATOM 176 O THR 18 -37.876 -7.279 30.167 1.00 50.00 O ATOM 177 H THR 18 -37.350 -3.790 32.409 1.00 50.00 H ATOM 178 CB THR 18 -35.890 -4.677 30.534 1.00 50.00 C ATOM 179 HG1 THR 18 -36.256 -3.141 29.515 1.00 50.00 H ATOM 180 OG1 THR 18 -35.802 -3.287 30.193 1.00 50.00 O ATOM 181 CG2 THR 18 -35.338 -5.496 29.377 1.00 50.00 C ATOM 182 N ASP 19 -37.115 -6.997 32.270 1.00 50.00 N ATOM 183 CA ASP 19 -37.172 -8.409 32.508 1.00 50.00 C ATOM 184 C ASP 19 -38.593 -8.878 32.475 1.00 50.00 C ATOM 185 O ASP 19 -38.890 -9.935 31.921 1.00 50.00 O ATOM 186 H ASP 19 -36.847 -6.440 32.925 1.00 50.00 H ATOM 187 CB ASP 19 -36.521 -8.753 33.849 1.00 50.00 C ATOM 188 CG ASP 19 -37.163 -8.023 35.013 1.00 50.00 C ATOM 189 OD1 ASP 19 -37.950 -7.085 34.764 1.00 50.00 O ATOM 190 OD2 ASP 19 -36.880 -8.389 36.173 1.00 50.00 O ATOM 191 N ILE 20 -39.523 -8.090 33.043 1.00 50.00 N ATOM 192 CA ILE 20 -40.887 -8.530 33.104 1.00 50.00 C ATOM 193 C ILE 20 -41.407 -8.712 31.709 1.00 50.00 C ATOM 194 O ILE 20 -42.083 -9.698 31.421 1.00 50.00 O ATOM 195 H ILE 20 -39.292 -7.290 33.383 1.00 50.00 H ATOM 196 CB ILE 20 -41.764 -7.541 33.895 1.00 50.00 C ATOM 197 CD1 ILE 20 -41.985 -6.417 36.172 1.00 50.00 C ATOM 198 CG1 ILE 20 -41.377 -7.550 35.375 1.00 50.00 C ATOM 199 CG2 ILE 20 -43.238 -7.858 33.693 1.00 50.00 C ATOM 200 N LYS 21 -41.106 -7.771 30.797 1.00 50.00 N ATOM 201 CA LYS 21 -41.583 -7.903 29.452 1.00 50.00 C ATOM 202 C LYS 21 -40.960 -9.119 28.847 1.00 50.00 C ATOM 203 O LYS 21 -41.606 -9.848 28.098 1.00 50.00 O ATOM 204 H LYS 21 -40.605 -7.059 31.029 1.00 50.00 H ATOM 205 CB LYS 21 -41.260 -6.646 28.642 1.00 50.00 C ATOM 206 CD LYS 21 -43.526 -5.571 28.746 1.00 50.00 C ATOM 207 CE LYS 21 -44.296 -4.299 29.065 1.00 50.00 C ATOM 208 CG LYS 21 -42.048 -5.417 29.066 1.00 50.00 C ATOM 209 HZ1 LYS 21 -46.173 -3.694 29.005 1.00 50.00 H ATOM 210 HZ2 LYS 21 -46.078 -5.109 29.316 1.00 50.00 H ATOM 211 HZ3 LYS 21 -45.886 -4.651 27.950 1.00 50.00 H ATOM 212 NZ LYS 21 -45.754 -4.453 28.808 1.00 50.00 N ATOM 213 N ASP 22 -39.685 -9.387 29.176 1.00 50.00 N ATOM 214 CA ASP 22 -39.015 -10.534 28.642 1.00 50.00 C ATOM 215 C ASP 22 -39.718 -11.758 29.124 1.00 50.00 C ATOM 216 O ASP 22 -39.728 -12.766 28.428 1.00 50.00 O ATOM 217 H ASP 22 -39.251 -8.835 29.739 1.00 50.00 H ATOM 218 CB ASP 22 -37.542 -10.535 29.055 1.00 50.00 C ATOM 219 CG ASP 22 -36.735 -9.474 28.333 1.00 50.00 C ATOM 220 OD1 ASP 22 -37.237 -8.924 27.329 1.00 50.00 O ATOM 221 OD2 ASP 22 -35.599 -9.191 28.770 1.00 50.00 O ATOM 222 N LEU 23 -40.302 -11.730 30.335 1.00 50.00 N ATOM 223 CA LEU 23 -40.994 -12.896 30.810 1.00 50.00 C ATOM 224 C LEU 23 -42.147 -13.177 29.897 1.00 50.00 C ATOM 225 O LEU 23 -42.340 -14.309 29.460 1.00 50.00 O ATOM 226 H LEU 23 -40.262 -10.990 30.848 1.00 50.00 H ATOM 227 CB LEU 23 -41.464 -12.690 32.251 1.00 50.00 C ATOM 228 CG LEU 23 -42.259 -13.839 32.875 1.00 50.00 C ATOM 229 CD1 LEU 23 -41.418 -15.105 32.937 1.00 50.00 C ATOM 230 CD2 LEU 23 -42.749 -13.461 34.265 1.00 50.00 C ATOM 231 N THR 24 -42.958 -12.150 29.586 1.00 50.00 N ATOM 232 CA THR 24 -44.107 -12.352 28.747 1.00 50.00 C ATOM 233 C THR 24 -43.672 -12.650 27.346 1.00 50.00 C ATOM 234 O THR 24 -44.214 -13.535 26.689 1.00 50.00 O ATOM 235 H THR 24 -42.775 -11.330 29.909 1.00 50.00 H ATOM 236 CB THR 24 -45.037 -11.125 28.758 1.00 50.00 C ATOM 237 HG1 THR 24 -43.672 -9.833 28.789 1.00 50.00 H ATOM 238 OG1 THR 24 -44.322 -9.974 28.292 1.00 50.00 O ATOM 239 CG2 THR 24 -45.536 -10.848 30.169 1.00 50.00 C ATOM 240 N LYS 25 -42.649 -11.915 26.881 1.00 50.00 N ATOM 241 CA LYS 25 -42.087 -11.964 25.564 1.00 50.00 C ATOM 242 C LYS 25 -41.523 -13.328 25.382 1.00 50.00 C ATOM 243 O LYS 25 -41.581 -13.908 24.302 1.00 50.00 O ATOM 244 H LYS 25 -42.314 -11.346 27.492 1.00 50.00 H ATOM 245 CB LYS 25 -41.029 -10.873 25.391 1.00 50.00 C ATOM 246 CD LYS 25 -39.472 -9.630 23.864 1.00 50.00 C ATOM 247 CE LYS 25 -38.861 -9.570 22.473 1.00 50.00 C ATOM 248 CG LYS 25 -40.432 -10.801 23.995 1.00 50.00 C ATOM 249 HZ1 LYS 25 -37.576 -8.425 21.509 1.00 50.00 H ATOM 250 HZ2 LYS 25 -37.255 -8.514 22.923 1.00 50.00 H ATOM 251 HZ3 LYS 25 -38.347 -7.665 22.479 1.00 50.00 H ATOM 252 NZ LYS 25 -37.915 -8.429 22.331 1.00 50.00 N ATOM 253 N LEU 26 -41.063 -13.884 26.509 1.00 50.00 N ATOM 254 CA LEU 26 -40.362 -15.117 26.700 1.00 50.00 C ATOM 255 C LEU 26 -41.144 -16.220 26.117 1.00 50.00 C ATOM 256 O LEU 26 -40.587 -17.235 25.701 1.00 50.00 O ATOM 257 H LEU 26 -41.253 -13.361 27.216 1.00 50.00 H ATOM 258 CB LEU 26 -40.097 -15.358 28.187 1.00 50.00 C ATOM 259 CG LEU 26 -39.309 -16.621 28.539 1.00 50.00 C ATOM 260 CD1 LEU 26 -37.932 -16.593 27.894 1.00 50.00 C ATOM 261 CD2 LEU 26 -39.183 -16.774 30.048 1.00 50.00 C ATOM 262 N GLY 27 -42.465 -16.056 26.047 1.00 50.00 N ATOM 263 CA GLY 27 -43.199 -17.188 25.603 1.00 50.00 C ATOM 264 C GLY 27 -44.218 -17.432 26.649 1.00 50.00 C ATOM 265 O GLY 27 -44.956 -18.412 26.619 1.00 50.00 O ATOM 266 H GLY 27 -42.897 -15.295 26.257 1.00 50.00 H ATOM 267 N ALA 28 -44.219 -16.520 27.632 1.00 50.00 N ATOM 268 CA ALA 28 -45.172 -16.436 28.693 1.00 50.00 C ATOM 269 C ALA 28 -46.484 -16.068 28.087 1.00 50.00 C ATOM 270 O ALA 28 -47.529 -16.342 28.671 1.00 50.00 O ATOM 271 H ALA 28 -43.544 -15.927 27.585 1.00 50.00 H ATOM 272 CB ALA 28 -44.718 -15.424 29.734 1.00 50.00 C ATOM 273 N ILE 29 -46.453 -15.492 26.864 1.00 50.00 N ATOM 274 CA ILE 29 -47.544 -14.779 26.259 1.00 50.00 C ATOM 275 C ILE 29 -48.850 -15.481 26.446 1.00 50.00 C ATOM 276 O ILE 29 -49.835 -14.819 26.756 1.00 50.00 O ATOM 277 H ILE 29 -45.674 -15.582 26.421 1.00 50.00 H ATOM 278 CB ILE 29 -47.302 -14.548 24.755 1.00 50.00 C ATOM 279 CD1 ILE 29 -45.651 -13.507 23.116 1.00 50.00 C ATOM 280 CG1 ILE 29 -46.141 -13.573 24.546 1.00 50.00 C ATOM 281 CG2 ILE 29 -48.577 -14.066 24.080 1.00 50.00 C ATOM 282 N TYR 30 -48.964 -16.806 26.296 1.00 50.00 N ATOM 283 CA TYR 30 -50.259 -17.289 26.687 1.00 50.00 C ATOM 284 C TYR 30 -50.082 -18.154 27.888 1.00 50.00 C ATOM 285 O TYR 30 -49.054 -18.805 28.066 1.00 50.00 O ATOM 286 H TYR 30 -48.342 -17.382 25.993 1.00 50.00 H ATOM 287 CB TYR 30 -50.919 -18.048 25.534 1.00 50.00 C ATOM 288 CG TYR 30 -51.278 -17.173 24.353 1.00 50.00 C ATOM 289 HH TYR 30 -51.597 -14.723 20.590 1.00 50.00 H ATOM 290 OH TYR 30 -52.250 -14.773 21.100 1.00 50.00 O ATOM 291 CZ TYR 30 -51.930 -15.568 22.176 1.00 50.00 C ATOM 292 CD1 TYR 30 -50.354 -16.923 23.346 1.00 50.00 C ATOM 293 CE1 TYR 30 -50.673 -16.127 22.264 1.00 50.00 C ATOM 294 CD2 TYR 30 -52.539 -16.602 24.249 1.00 50.00 C ATOM 295 CE2 TYR 30 -52.877 -15.802 23.173 1.00 50.00 C ATOM 296 N ASP 31 -51.078 -18.113 28.791 1.00 50.00 N ATOM 297 CA ASP 31 -50.996 -18.900 29.981 1.00 50.00 C ATOM 298 C ASP 31 -52.165 -19.827 30.006 1.00 50.00 C ATOM 299 O ASP 31 -53.287 -19.445 29.676 1.00 50.00 O ATOM 300 H ASP 31 -51.795 -17.590 28.646 1.00 50.00 H ATOM 301 CB ASP 31 -50.963 -17.999 31.218 1.00 50.00 C ATOM 302 CG ASP 31 -49.699 -17.166 31.299 1.00 50.00 C ATOM 303 OD1 ASP 31 -48.599 -17.743 31.166 1.00 50.00 O ATOM 304 OD2 ASP 31 -49.807 -15.938 31.495 1.00 50.00 O ATOM 305 N LYS 32 -51.911 -21.093 30.382 1.00 50.00 N ATOM 306 CA LYS 32 -52.955 -22.068 30.472 1.00 50.00 C ATOM 307 C LYS 32 -52.708 -22.809 31.740 1.00 50.00 C ATOM 308 O LYS 32 -52.556 -22.199 32.798 1.00 50.00 O ATOM 309 H LYS 32 -51.063 -21.322 30.579 1.00 50.00 H ATOM 310 CB LYS 32 -52.947 -22.975 29.240 1.00 50.00 C ATOM 311 CD LYS 32 -51.671 -24.544 27.753 1.00 50.00 C ATOM 312 CE LYS 32 -52.602 -25.743 27.837 1.00 50.00 C ATOM 313 CG LYS 32 -51.659 -23.762 29.057 1.00 50.00 C ATOM 314 HZ1 LYS 32 -52.764 -27.373 28.937 1.00 50.00 H ATOM 315 HZ2 LYS 32 -52.216 -26.264 29.700 1.00 50.00 H ATOM 316 HZ3 LYS 32 -51.375 -26.984 28.759 1.00 50.00 H ATOM 317 NZ LYS 32 -52.199 -26.686 28.917 1.00 50.00 N ATOM 318 N THR 33 -52.657 -24.152 31.666 1.00 50.00 N ATOM 319 CA THR 33 -52.423 -24.922 32.848 1.00 50.00 C ATOM 320 C THR 33 -51.022 -24.644 33.279 1.00 50.00 C ATOM 321 O THR 33 -50.342 -23.785 32.719 1.00 50.00 O ATOM 322 H THR 33 -52.770 -24.566 30.875 1.00 50.00 H ATOM 323 CB THR 33 -52.652 -26.424 32.597 1.00 50.00 C ATOM 324 HG1 THR 33 -51.832 -27.709 31.497 1.00 50.00 H ATOM 325 OG1 THR 33 -51.707 -26.900 31.630 1.00 50.00 O ATOM 326 CG2 THR 33 -54.056 -26.668 32.065 1.00 50.00 C ATOM 327 N LYS 34 -50.555 -25.365 34.312 1.00 50.00 N ATOM 328 CA LYS 34 -49.264 -25.079 34.857 1.00 50.00 C ATOM 329 C LYS 34 -48.240 -25.242 33.781 1.00 50.00 C ATOM 330 O LYS 34 -47.396 -24.368 33.587 1.00 50.00 O ATOM 331 H LYS 34 -51.054 -26.028 34.660 1.00 50.00 H ATOM 332 CB LYS 34 -48.971 -25.994 36.048 1.00 50.00 C ATOM 333 CD LYS 34 -47.416 -26.654 37.904 1.00 50.00 C ATOM 334 CE LYS 34 -46.052 -26.431 38.538 1.00 50.00 C ATOM 335 CG LYS 34 -47.621 -25.747 36.702 1.00 50.00 C ATOM 336 HZ1 LYS 34 -45.032 -27.157 40.063 1.00 50.00 H ATOM 337 HZ2 LYS 34 -45.891 -28.166 39.466 1.00 50.00 H ATOM 338 HZ3 LYS 34 -46.460 -27.146 40.331 1.00 50.00 H ATOM 339 NZ LYS 34 -45.837 -27.314 39.718 1.00 50.00 N ATOM 340 N LYS 35 -48.294 -26.355 33.028 1.00 50.00 N ATOM 341 CA LYS 35 -47.314 -26.539 31.998 1.00 50.00 C ATOM 342 C LYS 35 -47.659 -25.597 30.892 1.00 50.00 C ATOM 343 O LYS 35 -48.774 -25.618 30.372 1.00 50.00 O ATOM 344 H LYS 35 -48.929 -26.977 33.160 1.00 50.00 H ATOM 345 CB LYS 35 -47.293 -27.997 31.532 1.00 50.00 C ATOM 346 CD LYS 35 -46.134 -29.796 30.222 1.00 50.00 C ATOM 347 CE LYS 35 -47.341 -30.279 29.435 1.00 50.00 C ATOM 348 CG LYS 35 -46.218 -28.304 30.502 1.00 50.00 C ATOM 349 HZ1 LYS 35 -47.968 -31.977 28.650 1.00 50.00 H ATOM 350 HZ2 LYS 35 -47.200 -32.200 29.863 1.00 50.00 H ATOM 351 HZ3 LYS 35 -46.519 -31.877 28.620 1.00 50.00 H ATOM 352 NZ LYS 35 -47.248 -31.730 29.109 1.00 50.00 N ATOM 353 N TYR 36 -46.702 -24.724 30.512 1.00 50.00 N ATOM 354 CA TYR 36 -46.966 -23.789 29.459 1.00 50.00 C ATOM 355 C TYR 36 -45.769 -23.690 28.572 1.00 50.00 C ATOM 356 O TYR 36 -44.669 -24.110 28.930 1.00 50.00 O ATOM 357 H TYR 36 -45.899 -24.728 30.920 1.00 50.00 H ATOM 358 CB TYR 36 -47.335 -22.421 30.037 1.00 50.00 C ATOM 359 CG TYR 36 -46.207 -21.747 30.784 1.00 50.00 C ATOM 360 HH TYR 36 -42.685 -19.392 32.307 1.00 50.00 H ATOM 361 OH TYR 36 -43.099 -19.887 32.828 1.00 50.00 O ATOM 362 CZ TYR 36 -44.128 -20.504 32.153 1.00 50.00 C ATOM 363 CD1 TYR 36 -45.355 -20.861 30.139 1.00 50.00 C ATOM 364 CE1 TYR 36 -44.320 -20.241 30.814 1.00 50.00 C ATOM 365 CD2 TYR 36 -45.998 -22.001 32.134 1.00 50.00 C ATOM 366 CE2 TYR 36 -44.969 -21.389 32.826 1.00 50.00 C ATOM 367 N TRP 37 -45.984 -23.141 27.360 1.00 50.00 N ATOM 368 CA TRP 37 -44.972 -23.046 26.352 1.00 50.00 C ATOM 369 C TRP 37 -45.255 -21.795 25.620 1.00 50.00 C ATOM 370 O TRP 37 -46.132 -21.023 25.998 1.00 50.00 O ATOM 371 H TRP 37 -46.811 -22.825 27.199 1.00 50.00 H ATOM 372 CB TRP 37 -44.994 -24.283 25.451 1.00 50.00 C ATOM 373 HB2 TRP 37 -45.170 -25.145 25.996 1.00 50.00 H ATOM 374 HB3 TRP 37 -44.426 -24.233 24.630 1.00 50.00 H ATOM 375 CG TRP 37 -46.282 -24.459 24.707 1.00 50.00 C ATOM 376 CD1 TRP 37 -46.575 -23.999 23.455 1.00 50.00 C ATOM 377 HE1 TRP 37 -48.270 -24.148 22.293 1.00 50.00 H ATOM 378 NE1 TRP 37 -47.855 -24.356 23.106 1.00 50.00 N ATOM 379 CD2 TRP 37 -47.454 -25.144 25.168 1.00 50.00 C ATOM 380 CE2 TRP 37 -48.414 -25.060 24.145 1.00 50.00 C ATOM 381 CH2 TRP 37 -49.978 -26.280 25.426 1.00 50.00 C ATOM 382 CZ2 TRP 37 -49.683 -25.626 24.263 1.00 50.00 C ATOM 383 CE3 TRP 37 -47.783 -25.820 26.348 1.00 50.00 C ATOM 384 CZ3 TRP 37 -49.042 -26.379 26.460 1.00 50.00 C ATOM 385 N VAL 38 -44.497 -21.529 24.550 1.00 50.00 N ATOM 386 CA VAL 38 -44.941 -20.400 23.826 1.00 50.00 C ATOM 387 C VAL 38 -46.238 -20.846 23.231 1.00 50.00 C ATOM 388 O VAL 38 -46.317 -21.799 22.455 1.00 50.00 O ATOM 389 H VAL 38 -43.772 -21.985 24.272 1.00 50.00 H ATOM 390 CB VAL 38 -43.901 -19.953 22.782 1.00 50.00 C ATOM 391 CG1 VAL 38 -44.433 -18.785 21.967 1.00 50.00 C ATOM 392 CG2 VAL 38 -42.591 -19.581 23.461 1.00 50.00 C ATOM 393 N TYR 39 -47.333 -20.210 23.662 1.00 50.00 N ATOM 394 CA TYR 39 -48.592 -20.547 23.080 1.00 50.00 C ATOM 395 C TYR 39 -48.564 -20.093 21.668 1.00 50.00 C ATOM 396 O TYR 39 -49.207 -20.691 20.805 1.00 50.00 O ATOM 397 H TYR 39 -47.288 -19.582 24.305 1.00 50.00 H ATOM 398 CB TYR 39 -49.735 -19.904 23.867 1.00 50.00 C ATOM 399 CG TYR 39 -51.111 -20.258 23.349 1.00 50.00 C ATOM 400 HH TYR 39 -55.092 -22.010 22.190 1.00 50.00 H ATOM 401 OH TYR 39 -54.892 -21.248 21.931 1.00 50.00 O ATOM 402 CZ TYR 39 -53.641 -20.919 22.400 1.00 50.00 C ATOM 403 CD1 TYR 39 -51.685 -21.489 23.639 1.00 50.00 C ATOM 404 CE1 TYR 39 -52.942 -21.822 23.170 1.00 50.00 C ATOM 405 CD2 TYR 39 -51.831 -19.361 22.572 1.00 50.00 C ATOM 406 CE2 TYR 39 -53.089 -19.676 22.094 1.00 50.00 C ATOM 407 N GLN 40 -47.809 -19.007 21.416 1.00 50.00 N ATOM 408 CA GLN 40 -47.686 -18.482 20.090 1.00 50.00 C ATOM 409 C GLN 40 -47.202 -19.641 19.282 1.00 50.00 C ATOM 410 O GLN 40 -47.632 -19.860 18.151 1.00 50.00 O ATOM 411 H GLN 40 -47.378 -18.610 22.098 1.00 50.00 H ATOM 412 CB GLN 40 -46.738 -17.282 20.074 1.00 50.00 C ATOM 413 CD GLN 40 -47.936 -15.955 18.289 1.00 50.00 C ATOM 414 CG GLN 40 -46.631 -16.593 18.723 1.00 50.00 C ATOM 415 OE1 GLN 40 -48.520 -15.155 19.021 1.00 50.00 O ATOM 416 HE21 GLN 40 -49.169 -15.957 16.791 1.00 50.00 H ATOM 417 HE22 GLN 40 -47.939 -16.895 16.591 1.00 50.00 H ATOM 418 NE2 GLN 40 -48.398 -16.308 17.095 1.00 50.00 N ATOM 419 N GLY 41 -46.294 -20.438 19.868 1.00 50.00 N ATOM 420 CA GLY 41 -45.886 -21.645 19.217 1.00 50.00 C ATOM 421 C GLY 41 -44.781 -21.327 18.280 1.00 50.00 C ATOM 422 O GLY 41 -44.246 -22.219 17.623 1.00 50.00 O ATOM 423 H GLY 41 -45.943 -20.216 20.667 1.00 50.00 H ATOM 424 N LYS 42 -44.411 -20.040 18.179 1.00 50.00 N ATOM 425 CA LYS 42 -43.310 -19.746 17.320 1.00 50.00 C ATOM 426 C LYS 42 -42.162 -20.462 17.931 1.00 50.00 C ATOM 427 O LYS 42 -41.299 -21.028 17.265 1.00 50.00 O ATOM 428 H LYS 42 -44.824 -19.376 18.624 1.00 50.00 H ATOM 429 CB LYS 42 -43.101 -18.234 17.214 1.00 50.00 C ATOM 430 CD LYS 42 -43.925 -16.015 16.381 1.00 50.00 C ATOM 431 CE LYS 42 -45.016 -15.291 15.608 1.00 50.00 C ATOM 432 CG LYS 42 -44.185 -17.512 16.430 1.00 50.00 C ATOM 433 HZ1 LYS 42 -45.454 -13.428 15.129 1.00 50.00 H ATOM 434 HZ2 LYS 42 -44.018 -13.638 15.202 1.00 50.00 H ATOM 435 HZ3 LYS 42 -44.795 -13.508 16.422 1.00 50.00 H ATOM 436 NZ LYS 42 -44.799 -13.818 15.589 1.00 50.00 N ATOM 437 N PRO 43 -42.123 -20.440 19.218 1.00 50.00 N ATOM 438 CA PRO 43 -41.142 -21.278 19.817 1.00 50.00 C ATOM 439 C PRO 43 -41.720 -22.650 19.856 1.00 50.00 C ATOM 440 O PRO 43 -42.936 -22.784 19.728 1.00 50.00 O ATOM 441 CB PRO 43 -40.931 -20.667 21.204 1.00 50.00 C ATOM 442 CD PRO 43 -42.598 -19.350 20.103 1.00 50.00 C ATOM 443 CG PRO 43 -41.463 -19.278 21.086 1.00 50.00 C ATOM 444 N VAL 44 -40.884 -23.689 20.010 1.00 50.00 N ATOM 445 CA VAL 44 -41.441 -24.998 20.134 1.00 50.00 C ATOM 446 C VAL 44 -41.600 -25.186 21.603 1.00 50.00 C ATOM 447 O VAL 44 -40.995 -24.459 22.388 1.00 50.00 O ATOM 448 H VAL 44 -39.992 -23.575 20.036 1.00 50.00 H ATOM 449 CB VAL 44 -40.541 -26.058 19.471 1.00 50.00 C ATOM 450 CG1 VAL 44 -41.115 -27.451 19.685 1.00 50.00 C ATOM 451 CG2 VAL 44 -40.379 -25.767 17.988 1.00 50.00 C ATOM 452 N MET 45 -42.452 -26.129 22.034 1.00 50.00 N ATOM 453 CA MET 45 -42.603 -26.293 23.449 1.00 50.00 C ATOM 454 C MET 45 -41.256 -26.669 23.993 1.00 50.00 C ATOM 455 O MET 45 -40.829 -26.137 25.016 1.00 50.00 O ATOM 456 H MET 45 -42.921 -26.650 21.468 1.00 50.00 H ATOM 457 CB MET 45 -43.667 -27.348 23.757 1.00 50.00 C ATOM 458 SD MET 45 -45.154 -28.837 25.560 1.00 50.00 S ATOM 459 CE MET 45 -44.292 -30.324 25.058 1.00 50.00 C ATOM 460 CG MET 45 -43.892 -27.588 25.241 1.00 50.00 C ATOM 461 N PRO 46 -40.557 -27.564 23.350 1.00 50.00 N ATOM 462 CA PRO 46 -39.241 -27.895 23.807 1.00 50.00 C ATOM 463 C PRO 46 -38.222 -26.827 23.554 1.00 50.00 C ATOM 464 O PRO 46 -37.212 -26.822 24.258 1.00 50.00 O ATOM 465 CB PRO 46 -38.886 -29.162 23.025 1.00 50.00 C ATOM 466 CD PRO 46 -41.110 -28.562 22.373 1.00 50.00 C ATOM 467 CG PRO 46 -40.203 -29.735 22.623 1.00 50.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 75.76 51.5 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 48.23 70.6 34 100.0 34 ARMSMC SURFACE . . . . . . . . 75.33 53.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 77.74 41.7 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.24 53.1 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 82.11 48.3 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 78.05 52.9 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 78.55 51.9 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 76.53 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 51.48 60.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 49.05 61.9 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 45.77 76.9 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 48.21 63.6 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 70.98 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.82 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 87.82 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 81.55 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 85.82 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.63 66.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 71.63 66.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 91.68 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 71.63 66.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.74 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.74 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2496 CRMSCA SECONDARY STRUCTURE . . 5.29 17 100.0 17 CRMSCA SURFACE . . . . . . . . 9.05 29 100.0 29 CRMSCA BURIED . . . . . . . . 7.04 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.77 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 5.54 85 100.0 85 CRMSMC SURFACE . . . . . . . . 9.08 143 100.0 143 CRMSMC BURIED . . . . . . . . 7.06 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.75 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 11.25 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 8.21 84 100.0 84 CRMSSC SURFACE . . . . . . . . 11.64 127 100.0 127 CRMSSC BURIED . . . . . . . . 12.19 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.37 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 7.11 152 100.0 152 CRMSALL SURFACE . . . . . . . . 10.43 243 100.0 243 CRMSALL BURIED . . . . . . . . 10.09 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.847 0.761 0.791 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 45.148 0.826 0.842 17 100.0 17 ERRCA SURFACE . . . . . . . . 42.729 0.759 0.790 29 100.0 29 ERRCA BURIED . . . . . . . . 43.416 0.771 0.797 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.718 0.757 0.788 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 44.870 0.816 0.834 85 100.0 85 ERRMC SURFACE . . . . . . . . 42.577 0.754 0.786 143 100.0 143 ERRMC BURIED . . . . . . . . 43.392 0.770 0.796 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 39.889 0.679 0.727 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 40.208 0.686 0.734 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 42.648 0.751 0.782 84 100.0 84 ERRSC SURFACE . . . . . . . . 40.194 0.689 0.735 127 100.0 127 ERRSC BURIED . . . . . . . . 38.558 0.635 0.696 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 41.309 0.718 0.758 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 43.677 0.781 0.806 152 100.0 152 ERRALL SURFACE . . . . . . . . 41.401 0.722 0.761 243 100.0 243 ERRALL BURIED . . . . . . . . 40.883 0.700 0.744 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 5 14 30 35 35 DISTCA CA (P) 0.00 5.71 14.29 40.00 85.71 35 DISTCA CA (RMS) 0.00 1.89 2.26 3.66 5.86 DISTCA ALL (N) 0 5 19 90 205 296 296 DISTALL ALL (P) 0.00 1.69 6.42 30.41 69.26 296 DISTALL ALL (RMS) 0.00 1.65 2.25 3.84 5.95 DISTALL END of the results output