####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS361_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS361_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 18 - 38 4.93 8.07 LONGEST_CONTINUOUS_SEGMENT: 21 19 - 39 4.99 7.96 LCS_AVERAGE: 56.16 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 30 - 38 1.91 10.97 LCS_AVERAGE: 20.24 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 12 - 18 0.81 13.70 LCS_AVERAGE: 15.02 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 7 7 14 3 5 7 8 8 8 9 9 10 12 13 16 16 18 19 21 22 23 24 26 LCS_GDT F 13 F 13 7 7 14 3 5 7 8 8 8 9 9 10 12 14 17 18 18 20 21 22 24 24 27 LCS_GDT H 14 H 14 7 7 14 3 5 7 8 8 8 9 9 10 12 13 14 16 18 18 21 22 23 24 27 LCS_GDT Y 15 Y 15 7 7 17 3 5 7 8 8 8 9 11 12 14 15 17 18 20 22 25 27 29 30 32 LCS_GDT T 16 T 16 7 7 17 3 5 7 8 8 8 9 9 10 12 13 16 16 18 19 21 23 29 30 32 LCS_GDT V 17 V 17 7 7 17 3 5 7 8 8 8 9 9 10 12 15 19 23 26 27 28 29 29 30 32 LCS_GDT T 18 T 18 7 7 21 3 4 7 8 8 8 9 9 10 13 15 17 21 24 25 26 29 29 30 32 LCS_GDT D 19 D 19 4 5 21 3 4 4 4 4 6 8 12 14 17 20 21 23 25 27 28 29 29 30 32 LCS_GDT I 20 I 20 4 5 21 3 4 4 8 10 10 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT K 21 K 21 4 5 21 3 4 6 8 8 11 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT D 22 D 22 4 5 21 3 4 5 9 10 11 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT L 23 L 23 4 5 21 3 4 5 9 10 11 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT T 24 T 24 4 7 21 3 4 7 9 10 11 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT K 25 K 25 5 7 21 3 4 5 6 7 11 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT L 26 L 26 5 7 21 3 4 5 6 8 11 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT G 27 G 27 5 7 21 3 4 5 6 8 11 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT A 28 A 28 5 7 21 3 4 5 6 8 11 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT I 29 I 29 5 7 21 3 4 5 6 8 11 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT Y 30 Y 30 5 9 21 3 4 5 8 8 11 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT D 31 D 31 4 9 21 3 4 5 5 7 11 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT K 32 K 32 4 9 21 3 4 5 8 8 9 10 12 13 16 19 22 25 26 27 28 29 29 30 32 LCS_GDT T 33 T 33 4 9 21 3 3 5 6 7 9 10 11 12 16 18 19 25 26 27 28 29 29 30 32 LCS_GDT K 34 K 34 5 9 21 3 4 5 8 8 9 10 12 13 15 19 22 25 26 27 28 29 29 30 32 LCS_GDT K 35 K 35 5 9 21 3 4 5 8 8 9 10 12 13 16 18 20 25 26 27 28 29 29 30 32 LCS_GDT Y 36 Y 36 5 9 21 3 4 5 8 8 9 10 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT W 37 W 37 5 9 21 3 4 5 8 8 11 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT V 38 V 38 5 9 21 3 4 5 8 8 9 10 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT Y 39 Y 39 5 8 21 3 4 5 8 8 9 10 12 13 15 16 17 21 26 27 28 29 29 30 32 LCS_GDT Q 40 Q 40 3 7 19 3 3 3 5 5 7 9 12 13 15 16 17 18 20 23 24 28 29 29 32 LCS_GDT G 41 G 41 6 6 19 3 4 7 9 10 10 11 12 13 15 19 21 25 26 27 28 29 29 30 32 LCS_GDT K 42 K 42 6 6 19 3 5 7 9 10 10 11 12 13 16 19 22 25 26 27 28 29 29 30 32 LCS_GDT P 43 P 43 6 6 19 3 5 7 9 10 10 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT V 44 V 44 6 6 19 3 5 7 9 10 10 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT M 45 M 45 6 6 19 3 5 7 9 10 10 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_GDT P 46 P 46 6 6 19 3 5 7 9 10 10 11 12 14 17 20 22 25 26 27 28 29 29 30 32 LCS_AVERAGE LCS_A: 30.48 ( 15.02 20.24 56.16 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 7 9 10 11 11 12 14 17 20 22 25 26 27 28 29 29 30 32 GDT PERCENT_AT 8.57 14.29 20.00 25.71 28.57 31.43 31.43 34.29 40.00 48.57 57.14 62.86 71.43 74.29 77.14 80.00 82.86 82.86 85.71 91.43 GDT RMS_LOCAL 0.06 0.63 0.81 1.38 1.59 2.42 1.88 2.18 3.15 3.82 4.15 4.53 4.86 5.05 5.09 5.27 5.45 5.45 5.71 6.14 GDT RMS_ALL_AT 10.45 13.98 13.70 10.06 9.98 9.26 10.03 10.08 8.47 8.11 8.21 8.22 8.27 8.22 8.24 8.19 8.19 8.19 8.12 8.09 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 30 Y 30 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 26.717 0 0.602 1.537 33.685 0.000 0.000 LGA F 13 F 13 20.550 0 0.030 1.032 22.373 0.000 0.000 LGA H 14 H 14 20.515 0 0.122 1.355 27.464 0.000 0.000 LGA Y 15 Y 15 14.257 0 0.136 0.533 16.724 0.000 0.000 LGA T 16 T 16 14.350 0 0.104 0.248 18.314 0.000 0.000 LGA V 17 V 17 10.650 0 0.567 0.632 12.410 0.000 0.000 LGA T 18 T 18 11.640 0 0.437 0.427 14.842 0.238 0.136 LGA D 19 D 19 7.914 0 0.637 0.764 10.309 16.548 10.774 LGA I 20 I 20 2.021 0 0.602 0.712 5.233 54.524 51.429 LGA K 21 K 21 4.013 0 0.569 1.293 15.410 52.262 25.026 LGA D 22 D 22 1.634 0 0.045 0.239 2.677 80.119 74.524 LGA L 23 L 23 1.696 0 0.615 0.822 3.465 77.262 66.310 LGA T 24 T 24 2.187 0 0.565 1.325 6.595 71.190 56.939 LGA K 25 K 25 3.245 0 0.511 1.125 13.375 48.810 26.138 LGA L 26 L 26 4.920 0 0.100 0.250 7.200 23.929 21.131 LGA G 27 G 27 6.717 0 0.222 0.222 8.210 11.667 11.667 LGA A 28 A 28 9.362 0 0.052 0.056 10.034 3.690 2.952 LGA I 29 I 29 10.104 0 0.317 1.193 13.288 0.000 0.595 LGA Y 30 Y 30 11.526 0 0.074 1.331 22.532 0.000 0.000 LGA D 31 D 31 10.560 0 0.277 0.937 13.054 0.000 0.000 LGA K 32 K 32 10.513 0 0.574 1.294 10.791 0.000 2.487 LGA T 33 T 33 10.807 0 0.646 0.666 12.073 0.119 0.068 LGA K 34 K 34 7.379 0 0.124 0.445 8.846 6.190 9.153 LGA K 35 K 35 10.282 0 0.538 1.093 12.320 0.357 0.159 LGA Y 36 Y 36 10.148 0 0.093 1.296 15.153 1.548 0.516 LGA W 37 W 37 8.467 0 0.072 0.829 14.631 3.095 0.986 LGA V 38 V 38 7.625 0 0.231 0.357 7.939 9.405 8.844 LGA Y 39 Y 39 8.109 0 0.566 1.357 10.616 8.095 2.778 LGA Q 40 Q 40 5.817 0 0.416 0.984 13.561 27.024 12.857 LGA G 41 G 41 1.292 0 0.589 0.589 1.686 77.143 77.143 LGA K 42 K 42 1.236 0 0.054 0.557 3.948 79.286 72.540 LGA P 43 P 43 2.137 0 0.038 0.232 3.099 77.381 66.667 LGA V 44 V 44 1.590 0 0.051 0.051 4.087 72.976 60.340 LGA M 45 M 45 1.515 0 0.179 1.029 8.059 77.143 51.310 LGA P 46 P 46 1.837 0 0.066 0.075 2.998 67.143 70.816 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 7.836 7.749 9.476 27.061 22.408 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 12 2.18 38.571 34.848 0.526 LGA_LOCAL RMSD: 2.180 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.083 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 7.836 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.084639 * X + -0.898877 * Y + -0.429949 * Z + -47.761429 Y_new = 0.710243 * X + -0.357063 * Y + 0.606681 * Z + -18.350084 Z_new = -0.698850 * X + -0.254019 * Y + 0.668642 * Z + 25.689857 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.689407 0.773789 -0.363062 [DEG: 96.7959 44.3348 -20.8019 ] ZXZ: -2.525058 0.838415 -1.919430 [DEG: -144.6752 48.0376 -109.9752 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS361_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS361_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 12 2.18 34.848 7.84 REMARK ---------------------------------------------------------- MOLECULE T0548TS361_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 87 N HIS 12 -38.955 -12.690 13.746 1.00 91.41 N ATOM 88 CA HIS 12 -40.309 -12.482 13.311 1.00 91.59 C ATOM 89 C HIS 12 -41.266 -12.866 14.384 1.00 88.74 C ATOM 90 O HIS 12 -42.277 -12.194 14.580 1.00 88.20 O ATOM 91 CB HIS 12 -40.670 -13.284 12.053 1.00 93.57 C ATOM 92 CG HIS 12 -39.770 -12.939 10.911 1.00 94.13 C ATOM 93 ND1 HIS 12 -38.877 -13.817 10.342 1.00 94.80 N ATOM 94 CD2 HIS 12 -39.610 -11.762 10.251 1.00 94.55 C ATOM 95 CE1 HIS 12 -38.224 -13.133 9.372 1.00 95.41 C ATOM 96 NE2 HIS 12 -38.633 -11.881 9.280 1.00 95.35 N ATOM 97 N PHE 13 -40.988 -13.954 15.114 1.00 87.13 N ATOM 98 CA PHE 13 -41.918 -14.380 16.110 1.00 83.78 C ATOM 99 C PHE 13 -41.940 -13.394 17.222 1.00 78.87 C ATOM 100 O PHE 13 -40.914 -12.850 17.626 1.00 77.90 O ATOM 101 CB PHE 13 -41.546 -15.742 16.701 1.00 83.83 C ATOM 102 CG PHE 13 -41.548 -16.645 15.526 1.00 87.32 C ATOM 103 CD1 PHE 13 -42.738 -17.085 15.003 1.00 90.06 C ATOM 104 CD2 PHE 13 -40.368 -17.039 14.943 1.00 87.95 C ATOM 105 CE1 PHE 13 -42.749 -17.916 13.912 1.00 92.37 C ATOM 106 CE2 PHE 13 -40.375 -17.871 13.850 1.00 90.89 C ATOM 107 CZ PHE 13 -41.568 -18.310 13.333 1.00 92.66 C ATOM 108 N HIS 14 -43.148 -13.115 17.737 1.00 76.22 N ATOM 109 CA HIS 14 -43.235 -12.206 18.827 1.00 71.03 C ATOM 110 C HIS 14 -43.067 -12.993 20.074 1.00 65.27 C ATOM 111 O HIS 14 -43.520 -14.130 20.174 1.00 68.27 O ATOM 112 CB HIS 14 -44.560 -11.448 18.859 1.00 73.84 C ATOM 113 CG HIS 14 -44.640 -10.633 17.614 1.00 79.79 C ATOM 114 ND1 HIS 14 -43.531 -10.024 17.072 1.00 83.68 N ATOM 115 CD2 HIS 14 -45.684 -10.269 16.821 1.00 82.96 C ATOM 116 CE1 HIS 14 -43.951 -9.336 15.982 1.00 87.51 C ATOM 117 NE2 HIS 14 -45.252 -9.455 15.788 1.00 87.39 N ATOM 118 N TYR 15 -42.393 -12.392 21.066 1.00 57.79 N ATOM 119 CA TYR 15 -42.140 -13.073 22.291 1.00 52.87 C ATOM 120 C TYR 15 -43.142 -12.498 23.209 1.00 46.55 C ATOM 121 O TYR 15 -43.108 -11.299 23.461 1.00 44.41 O ATOM 122 CB TYR 15 -40.765 -12.698 22.864 1.00 51.58 C ATOM 123 CG TYR 15 -39.777 -12.988 21.791 1.00 58.46 C ATOM 124 CD1 TYR 15 -39.667 -14.255 21.282 1.00 62.80 C ATOM 125 CD2 TYR 15 -38.944 -12.013 21.301 1.00 62.56 C ATOM 126 CE1 TYR 15 -38.759 -14.555 20.293 1.00 69.39 C ATOM 127 CE2 TYR 15 -38.031 -12.308 20.310 1.00 69.58 C ATOM 128 CZ TYR 15 -37.937 -13.581 19.798 1.00 72.29 C ATOM 129 OH TYR 15 -37.008 -13.901 18.784 1.00 78.57 H ATOM 130 N THR 16 -44.074 -13.322 23.723 1.00 47.09 N ATOM 131 CA THR 16 -45.048 -12.701 24.563 1.00 42.27 C ATOM 132 C THR 16 -45.123 -13.321 25.908 1.00 33.01 C ATOM 133 O THR 16 -44.945 -14.523 26.096 1.00 35.88 O ATOM 134 CB THR 16 -46.439 -12.641 24.030 1.00 49.20 C ATOM 135 OG1 THR 16 -46.881 -13.927 23.622 1.00 58.04 O ATOM 136 CG2 THR 16 -46.470 -11.607 22.900 1.00 51.26 C ATOM 137 N VAL 17 -45.466 -12.441 26.863 1.00 27.62 N ATOM 138 CA VAL 17 -45.540 -12.633 28.279 1.00 23.27 C ATOM 139 C VAL 17 -46.584 -13.629 28.664 1.00 21.99 C ATOM 140 O VAL 17 -47.681 -13.697 28.118 1.00 21.81 O ATOM 141 CB VAL 17 -45.911 -11.366 28.995 1.00 30.80 C ATOM 142 CG1 VAL 17 -46.095 -11.682 30.482 1.00 35.84 C ATOM 143 CG2 VAL 17 -44.847 -10.298 28.727 1.00 36.16 C ATOM 144 N THR 18 -46.213 -14.427 29.671 1.00 21.89 N ATOM 145 CA THR 18 -46.996 -15.414 30.341 1.00 21.57 C ATOM 146 C THR 18 -46.607 -15.105 31.737 1.00 21.54 C ATOM 147 O THR 18 -46.769 -13.965 32.167 1.00 21.36 O ATOM 148 CB THR 18 -46.538 -16.787 29.971 1.00 22.31 C ATOM 149 OG1 THR 18 -46.691 -16.938 28.571 1.00 23.93 O ATOM 150 CG2 THR 18 -47.381 -17.839 30.698 1.00 24.10 C ATOM 151 N ASP 19 -46.102 -16.084 32.503 1.00 22.01 N ATOM 152 CA ASP 19 -45.490 -15.642 33.710 1.00 22.24 C ATOM 153 C ASP 19 -44.364 -14.820 33.150 1.00 21.82 C ATOM 154 O ASP 19 -43.891 -15.122 32.056 1.00 21.78 O ATOM 155 CB ASP 19 -44.887 -16.791 34.518 1.00 23.01 C ATOM 156 CG ASP 19 -44.332 -16.201 35.796 1.00 25.94 C ATOM 157 OD1 ASP 19 -44.727 -15.057 36.145 1.00 30.25 O ATOM 158 OD2 ASP 19 -43.495 -16.888 36.439 1.00 27.78 O ATOM 159 N ILE 20 -43.916 -13.766 33.858 1.00 21.69 N ATOM 160 CA ILE 20 -42.963 -12.834 33.315 1.00 21.61 C ATOM 161 C ILE 20 -41.777 -13.545 32.745 1.00 21.17 C ATOM 162 O ILE 20 -41.073 -14.271 33.442 1.00 21.21 O ATOM 163 CB ILE 20 -42.415 -11.902 34.354 1.00 21.88 C ATOM 164 CG1 ILE 20 -43.528 -11.065 35.001 1.00 25.37 C ATOM 165 CG2 ILE 20 -41.320 -11.056 33.691 1.00 26.22 C ATOM 166 CD1 ILE 20 -44.229 -10.106 34.043 1.00 27.80 C ATOM 167 N LYS 21 -41.539 -13.347 31.433 1.00 20.89 N ATOM 168 CA LYS 21 -40.383 -13.907 30.808 1.00 20.77 C ATOM 169 C LYS 21 -40.042 -13.042 29.637 1.00 20.94 C ATOM 170 O LYS 21 -40.711 -12.046 29.363 1.00 21.10 O ATOM 171 CB LYS 21 -40.483 -15.393 30.370 1.00 20.90 C ATOM 172 CG LYS 21 -40.156 -16.403 31.486 1.00 23.91 C ATOM 173 CD LYS 21 -40.317 -17.881 31.094 1.00 32.76 C ATOM 174 CE LYS 21 -39.814 -18.860 32.162 1.00 40.34 C ATOM 175 NZ LYS 21 -39.996 -20.259 31.718 1.00 51.55 N ATOM 176 N ASP 22 -38.984 -13.425 28.899 1.00 21.10 N ATOM 177 CA ASP 22 -38.474 -12.598 27.847 1.00 21.46 C ATOM 178 C ASP 22 -39.549 -12.362 26.856 1.00 21.57 C ATOM 179 O ASP 22 -39.646 -11.288 26.268 1.00 21.92 O ATOM 180 CB ASP 22 -37.264 -13.207 27.129 1.00 21.76 C ATOM 181 CG ASP 22 -36.110 -13.089 28.109 1.00 24.71 C ATOM 182 OD1 ASP 22 -36.390 -12.792 29.300 1.00 27.42 O ATOM 183 OD2 ASP 22 -34.940 -13.283 27.687 1.00 26.07 O ATOM 184 N LEU 23 -40.388 -13.369 26.621 1.00 21.45 N ATOM 185 CA LEU 23 -41.483 -13.135 25.743 1.00 21.72 C ATOM 186 C LEU 23 -42.257 -12.112 26.478 1.00 21.74 C ATOM 187 O LEU 23 -42.912 -12.423 27.470 1.00 22.13 O ATOM 188 CB LEU 23 -42.266 -14.408 25.691 1.00 21.87 C ATOM 189 CG LEU 23 -41.225 -15.491 25.480 1.00 22.82 C ATOM 190 CD1 LEU 23 -41.789 -16.864 25.763 1.00 24.65 C ATOM 191 CD2 LEU 23 -40.579 -15.355 24.099 1.00 24.54 C ATOM 192 N THR 24 -42.214 -10.867 25.978 1.00 21.45 N ATOM 193 CA THR 24 -42.738 -9.794 26.754 1.00 21.64 C ATOM 194 C THR 24 -43.760 -9.080 25.951 1.00 21.55 C ATOM 195 O THR 24 -44.221 -9.556 24.916 1.00 21.82 O ATOM 196 CB THR 24 -41.665 -8.825 27.151 1.00 22.25 C ATOM 197 OG1 THR 24 -42.143 -7.932 28.142 1.00 22.84 O ATOM 198 CG2 THR 24 -41.207 -8.060 25.901 1.00 22.82 C ATOM 199 N LYS 25 -44.196 -7.918 26.450 1.00 21.35 N ATOM 200 CA LYS 25 -45.180 -7.202 25.715 1.00 21.46 C ATOM 201 C LYS 25 -44.443 -6.294 24.790 1.00 21.16 C ATOM 202 O LYS 25 -44.199 -5.125 25.081 1.00 20.90 O ATOM 203 CB LYS 25 -46.086 -6.374 26.636 1.00 21.80 C ATOM 204 CG LYS 25 -46.941 -7.242 27.565 1.00 24.96 C ATOM 205 CD LYS 25 -47.981 -8.098 26.834 1.00 28.09 C ATOM 206 CE LYS 25 -48.797 -9.014 27.749 1.00 34.37 C ATOM 207 NZ LYS 25 -49.779 -8.220 28.518 1.00 39.47 N ATOM 208 N LEU 26 -44.073 -6.867 23.636 1.00 21.43 N ATOM 209 CA LEU 26 -43.357 -6.262 22.558 1.00 21.40 C ATOM 210 C LEU 26 -44.307 -5.259 21.993 1.00 21.30 C ATOM 211 O LEU 26 -43.927 -4.191 21.514 1.00 21.64 O ATOM 212 CB LEU 26 -43.023 -7.377 21.538 1.00 22.04 C ATOM 213 CG LEU 26 -42.032 -7.080 20.402 1.00 28.60 C ATOM 214 CD1 LEU 26 -40.672 -6.627 20.950 1.00 33.15 C ATOM 215 CD2 LEU 26 -41.878 -8.322 19.504 1.00 33.53 C ATOM 216 N GLY 27 -45.603 -5.600 22.084 1.00 21.10 N ATOM 217 CA GLY 27 -46.664 -4.828 21.515 1.00 21.24 C ATOM 218 C GLY 27 -46.968 -5.601 20.293 1.00 21.32 C ATOM 219 O GLY 27 -48.032 -5.509 19.692 1.00 21.15 O ATOM 220 N ALA 28 -45.993 -6.440 19.935 1.00 21.71 N ATOM 221 CA ALA 28 -46.090 -7.273 18.794 1.00 21.88 C ATOM 222 C ALA 28 -47.091 -8.327 19.135 1.00 21.64 C ATOM 223 O ALA 28 -47.267 -8.674 20.303 1.00 21.65 O ATOM 224 CB ALA 28 -44.713 -7.826 18.481 1.00 22.40 C ATOM 225 N ILE 29 -47.802 -8.853 18.121 1.00 21.58 N ATOM 226 CA ILE 29 -48.878 -9.726 18.468 1.00 21.54 C ATOM 227 C ILE 29 -48.561 -11.157 18.197 1.00 21.22 C ATOM 228 O ILE 29 -48.963 -11.717 17.179 1.00 21.30 O ATOM 229 CB ILE 29 -50.121 -9.423 17.679 1.00 21.77 C ATOM 230 CG1 ILE 29 -50.559 -7.971 17.898 1.00 22.32 C ATOM 231 CG2 ILE 29 -51.215 -10.429 18.065 1.00 22.41 C ATOM 232 CD1 ILE 29 -51.605 -7.514 16.885 1.00 28.05 C ATOM 233 N TYR 30 -47.837 -11.800 19.120 1.00 21.03 N ATOM 234 CA TYR 30 -47.773 -13.224 19.071 1.00 20.96 C ATOM 235 C TYR 30 -48.456 -13.624 20.320 1.00 21.13 C ATOM 236 O TYR 30 -48.046 -13.264 21.419 1.00 21.24 O ATOM 237 CB TYR 30 -46.377 -13.864 18.935 1.00 21.12 C ATOM 238 CG TYR 30 -46.171 -14.182 17.489 1.00 22.30 C ATOM 239 CD1 TYR 30 -45.819 -13.227 16.579 1.00 24.59 C ATOM 240 CD2 TYR 30 -46.326 -15.469 17.026 1.00 29.19 C ATOM 241 CE1 TYR 30 -45.633 -13.532 15.251 1.00 24.50 C ATOM 242 CE2 TYR 30 -46.146 -15.798 15.702 1.00 30.93 C ATOM 243 CZ TYR 30 -45.797 -14.821 14.806 1.00 25.28 C ATOM 244 OH TYR 30 -45.605 -15.135 13.444 1.00 26.96 H ATOM 245 N ASP 31 -49.539 -14.391 20.159 1.00 21.67 N ATOM 246 CA ASP 31 -50.422 -14.693 21.236 1.00 22.24 C ATOM 247 C ASP 31 -49.644 -15.305 22.322 1.00 21.93 C ATOM 248 O ASP 31 -48.506 -15.725 22.158 1.00 21.52 O ATOM 249 CB ASP 31 -51.552 -15.684 20.891 1.00 23.29 C ATOM 250 CG ASP 31 -52.575 -15.022 19.982 1.00 31.46 C ATOM 251 OD1 ASP 31 -52.612 -13.764 19.950 1.00 35.57 O ATOM 252 OD2 ASP 31 -53.337 -15.767 19.310 1.00 35.51 O ATOM 253 N LYS 32 -50.228 -15.319 23.517 1.00 22.38 N ATOM 254 CA LYS 32 -49.457 -15.880 24.558 1.00 22.42 C ATOM 255 C LYS 32 -49.785 -17.325 24.671 1.00 22.64 C ATOM 256 O LYS 32 -50.899 -17.711 25.018 1.00 23.55 O ATOM 257 CB LYS 32 -49.686 -15.187 25.911 1.00 23.07 C ATOM 258 CG LYS 32 -51.154 -15.089 26.340 1.00 27.84 C ATOM 259 CD LYS 32 -52.021 -14.218 25.423 1.00 30.38 C ATOM 260 CE LYS 32 -53.444 -13.981 25.937 1.00 34.97 C ATOM 261 NZ LYS 32 -53.457 -12.867 26.916 1.00 39.77 N ATOM 262 N THR 33 -48.811 -18.172 24.307 1.00 23.33 N ATOM 263 CA THR 33 -48.954 -19.556 24.602 1.00 23.84 C ATOM 264 C THR 33 -48.187 -19.598 25.877 1.00 23.38 C ATOM 265 O THR 33 -48.116 -18.591 26.579 1.00 23.67 O ATOM 266 CB THR 33 -48.353 -20.493 23.585 1.00 25.02 C ATOM 267 OG1 THR 33 -48.905 -20.232 22.305 1.00 31.77 O ATOM 268 CG2 THR 33 -48.701 -21.949 23.959 1.00 26.63 C ATOM 269 N LYS 34 -47.587 -20.730 26.239 1.00 23.19 N ATOM 270 CA LYS 34 -46.866 -20.697 27.469 1.00 22.84 C ATOM 271 C LYS 34 -45.722 -19.737 27.309 1.00 22.52 C ATOM 272 O LYS 34 -45.310 -19.068 28.252 1.00 22.20 O ATOM 273 CB LYS 34 -46.282 -22.053 27.866 1.00 22.88 C ATOM 274 CG LYS 34 -45.647 -22.013 29.248 1.00 25.76 C ATOM 275 CD LYS 34 -45.231 -23.391 29.758 1.00 29.45 C ATOM 276 CE LYS 34 -46.339 -24.157 30.473 1.00 33.73 C ATOM 277 NZ LYS 34 -45.818 -25.467 30.918 1.00 39.96 N ATOM 278 N LYS 35 -45.148 -19.661 26.098 1.00 22.80 N ATOM 279 CA LYS 35 -44.007 -18.828 25.887 1.00 22.62 C ATOM 280 C LYS 35 -44.130 -18.149 24.563 1.00 22.12 C ATOM 281 O LYS 35 -45.036 -17.357 24.317 1.00 22.36 O ATOM 282 CB LYS 35 -42.700 -19.641 25.853 1.00 23.66 C ATOM 283 CG LYS 35 -42.054 -19.848 27.221 1.00 27.19 C ATOM 284 CD LYS 35 -42.868 -20.705 28.183 1.00 30.05 C ATOM 285 CE LYS 35 -42.225 -20.778 29.565 1.00 35.04 C ATOM 286 NZ LYS 35 -43.031 -21.624 30.464 1.00 38.43 N ATOM 287 N TYR 36 -43.129 -18.412 23.704 1.00 21.66 N ATOM 288 CA TYR 36 -43.017 -17.839 22.395 1.00 21.39 C ATOM 289 C TYR 36 -44.247 -18.170 21.644 1.00 21.61 C ATOM 290 O TYR 36 -44.772 -19.281 21.719 1.00 21.84 O ATOM 291 CB TYR 36 -41.847 -18.412 21.590 1.00 21.28 C ATOM 292 CG TYR 36 -40.589 -17.955 22.234 1.00 21.45 C ATOM 293 CD1 TYR 36 -40.311 -18.319 23.530 1.00 22.05 C ATOM 294 CD2 TYR 36 -39.670 -17.200 21.546 1.00 22.16 C ATOM 295 CE1 TYR 36 -39.150 -17.922 24.151 1.00 22.51 C ATOM 296 CE2 TYR 36 -38.505 -16.804 22.165 1.00 22.54 C ATOM 297 CZ TYR 36 -38.241 -17.154 23.463 1.00 22.34 C ATOM 298 OH TYR 36 -37.040 -16.730 24.074 1.00 22.97 H ATOM 299 N TRP 37 -44.764 -17.188 20.896 1.00 21.81 N ATOM 300 CA TRP 37 -45.925 -17.576 20.183 1.00 22.24 C ATOM 301 C TRP 37 -45.455 -17.888 18.815 1.00 22.03 C ATOM 302 O TRP 37 -44.606 -17.200 18.255 1.00 21.74 O ATOM 303 CB TRP 37 -46.999 -16.504 20.050 1.00 22.95 C ATOM 304 CG TRP 37 -48.359 -17.103 19.793 1.00 27.19 C ATOM 305 CD1 TRP 37 -49.007 -18.016 20.570 1.00 33.71 C ATOM 306 CD2 TRP 37 -49.260 -16.775 18.722 1.00 32.28 C ATOM 307 NE1 TRP 37 -50.240 -18.298 20.039 1.00 38.69 N ATOM 308 CE2 TRP 37 -50.415 -17.535 18.907 1.00 37.70 C ATOM 309 CE3 TRP 37 -49.154 -15.889 17.692 1.00 36.79 C ATOM 310 CZ2 TRP 37 -51.477 -17.423 18.057 1.00 45.16 C ATOM 311 CZ3 TRP 37 -50.214 -15.800 16.819 1.00 45.17 C ATOM 312 CH2 TRP 37 -51.354 -16.554 16.998 1.00 48.48 H ATOM 313 N VAL 38 -45.987 -18.984 18.273 1.00 22.47 N ATOM 314 CA VAL 38 -45.713 -19.392 16.934 1.00 22.64 C ATOM 315 C VAL 38 -47.103 -19.437 16.395 1.00 22.96 C ATOM 316 O VAL 38 -48.029 -19.092 17.128 1.00 23.85 O ATOM 317 CB VAL 38 -45.117 -20.772 16.863 1.00 23.37 C ATOM 318 CG1 VAL 38 -44.857 -21.140 15.397 1.00 25.59 C ATOM 319 CG2 VAL 38 -43.854 -20.824 17.729 1.00 25.26 C ATOM 320 N TYR 39 -47.310 -19.798 15.112 1.00 22.94 N ATOM 321 CA TYR 39 -48.662 -19.812 14.645 1.00 23.46 C ATOM 322 C TYR 39 -49.363 -20.813 15.494 1.00 23.53 C ATOM 323 O TYR 39 -50.411 -20.535 16.074 1.00 23.21 O ATOM 324 CB TYR 39 -48.809 -20.332 13.211 1.00 24.07 C ATOM 325 CG TYR 39 -47.951 -19.497 12.341 1.00 27.50 C ATOM 326 CD1 TYR 39 -48.435 -18.341 11.781 1.00 30.22 C ATOM 327 CD2 TYR 39 -46.653 -19.880 12.100 1.00 30.66 C ATOM 328 CE1 TYR 39 -47.619 -17.580 10.979 1.00 34.97 C ATOM 329 CE2 TYR 39 -45.835 -19.124 11.299 1.00 35.67 C ATOM 330 CZ TYR 39 -46.322 -17.971 10.738 1.00 37.57 C ATOM 331 OH TYR 39 -45.489 -17.186 9.914 1.00 43.50 H ATOM 332 N GLN 40 -48.793 -22.024 15.605 1.00 24.46 N ATOM 333 CA GLN 40 -49.388 -22.923 16.538 1.00 24.80 C ATOM 334 C GLN 40 -49.066 -22.395 17.903 1.00 24.44 C ATOM 335 O GLN 40 -49.935 -22.321 18.769 1.00 25.41 O ATOM 336 CB GLN 40 -48.940 -24.382 16.369 1.00 26.35 C ATOM 337 CG GLN 40 -49.486 -24.958 15.060 1.00 29.27 C ATOM 338 CD GLN 40 -49.165 -26.438 14.997 1.00 31.26 C ATOM 339 OE1 GLN 40 -48.581 -26.921 14.028 1.00 31.76 O ATOM 340 NE2 GLN 40 -49.584 -27.189 16.050 1.00 38.02 N ATOM 341 N GLY 41 -47.806 -21.959 18.110 1.00 23.72 N ATOM 342 CA GLY 41 -47.379 -21.402 19.367 1.00 23.51 C ATOM 343 C GLY 41 -46.615 -22.450 20.110 1.00 22.56 C ATOM 344 O GLY 41 -47.062 -23.589 20.231 1.00 22.92 O ATOM 345 N LYS 42 -45.430 -22.092 20.643 1.00 22.29 N ATOM 346 CA LYS 42 -44.673 -23.063 21.376 1.00 21.70 C ATOM 347 C LYS 42 -43.870 -22.352 22.410 1.00 21.23 C ATOM 348 O LYS 42 -43.292 -21.289 22.190 1.00 21.45 O ATOM 349 CB LYS 42 -43.727 -23.888 20.495 1.00 22.23 C ATOM 350 CG LYS 42 -44.510 -24.727 19.486 1.00 24.89 C ATOM 351 CD LYS 42 -43.661 -25.332 18.376 1.00 28.17 C ATOM 352 CE LYS 42 -44.501 -25.971 17.271 1.00 32.38 C ATOM 353 NZ LYS 42 -45.367 -27.029 17.839 1.00 37.20 N ATOM 354 N PRO 43 -43.859 -22.933 23.567 1.00 21.10 N ATOM 355 CA PRO 43 -43.137 -22.336 24.652 1.00 21.02 C ATOM 356 C PRO 43 -41.665 -22.568 24.548 1.00 20.66 C ATOM 357 O PRO 43 -41.260 -23.605 24.025 1.00 20.73 O ATOM 358 CB PRO 43 -43.766 -22.888 25.930 1.00 21.67 C ATOM 359 CG PRO 43 -44.649 -24.059 25.467 1.00 22.50 C ATOM 360 CD PRO 43 -45.005 -23.698 24.022 1.00 21.67 C ATOM 361 N VAL 44 -40.840 -21.616 25.029 1.00 20.64 N ATOM 362 CA VAL 44 -39.430 -21.865 25.019 1.00 20.57 C ATOM 363 C VAL 44 -38.997 -21.906 26.445 1.00 20.63 C ATOM 364 O VAL 44 -39.275 -20.998 27.227 1.00 20.80 O ATOM 365 CB VAL 44 -38.614 -20.814 24.312 1.00 20.79 C ATOM 366 CG1 VAL 44 -37.120 -21.070 24.566 1.00 22.68 C ATOM 367 CG2 VAL 44 -38.978 -20.838 22.816 1.00 22.65 C ATOM 368 N MET 45 -38.316 -23.002 26.818 1.00 20.76 N ATOM 369 CA MET 45 -37.838 -23.165 28.156 1.00 21.00 C ATOM 370 C MET 45 -36.538 -22.448 28.291 1.00 20.73 C ATOM 371 O MET 45 -35.898 -22.073 27.310 1.00 20.69 O ATOM 372 CB MET 45 -37.629 -24.620 28.588 1.00 21.54 C ATOM 373 CG MET 45 -38.946 -25.308 28.930 1.00 24.76 C ATOM 374 SD MET 45 -39.840 -24.489 30.285 1.00 32.42 S ATOM 375 CE MET 45 -40.844 -25.935 30.714 1.00 34.93 C ATOM 376 N PRO 46 -36.161 -22.222 29.516 1.00 20.93 N ATOM 377 CA PRO 46 -34.904 -21.587 29.770 1.00 21.05 C ATOM 378 C PRO 46 -33.823 -22.565 29.466 1.00 20.91 C ATOM 379 O PRO 46 -34.103 -23.758 29.365 1.00 20.69 O ATOM 380 CB PRO 46 -34.942 -21.133 31.225 1.00 21.39 C ATOM 381 CG PRO 46 -36.440 -20.918 31.495 1.00 22.56 C ATOM 382 CD PRO 46 -37.142 -21.903 30.543 1.00 21.40 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 76.01 52.9 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 83.06 47.1 34 100.0 34 ARMSMC SURFACE . . . . . . . . 80.60 48.2 56 100.0 56 ARMSMC BURIED . . . . . . . . 49.22 75.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.34 43.8 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 77.98 37.9 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 79.53 35.3 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 78.99 40.7 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 40.96 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 66.52 44.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 70.46 42.9 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 49.96 69.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 69.72 40.9 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 35.00 66.7 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.63 50.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 66.70 57.1 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 79.57 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 73.63 50.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 93.75 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 93.75 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 116.12 0.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 93.75 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.84 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.84 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2239 CRMSCA SECONDARY STRUCTURE . . 5.51 17 100.0 17 CRMSCA SURFACE . . . . . . . . 8.27 29 100.0 29 CRMSCA BURIED . . . . . . . . 5.27 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.92 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 5.74 85 100.0 85 CRMSMC SURFACE . . . . . . . . 8.32 143 100.0 143 CRMSMC BURIED . . . . . . . . 5.63 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.88 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 9.83 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 8.67 84 100.0 84 CRMSSC SURFACE . . . . . . . . 11.58 127 100.0 127 CRMSSC BURIED . . . . . . . . 7.05 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.53 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 7.45 152 100.0 152 CRMSALL SURFACE . . . . . . . . 10.07 243 100.0 243 CRMSALL BURIED . . . . . . . . 6.49 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 21.681 0.601 0.671 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 16.736 0.629 0.691 17 100.0 17 ERRCA SURFACE . . . . . . . . 21.569 0.581 0.657 29 100.0 29 ERRCA BURIED . . . . . . . . 22.224 0.700 0.742 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 21.590 0.596 0.668 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 16.660 0.617 0.683 85 100.0 85 ERRMC SURFACE . . . . . . . . 21.582 0.578 0.655 143 100.0 143 ERRMC BURIED . . . . . . . . 21.628 0.684 0.729 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 28.441 0.579 0.651 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 26.706 0.572 0.647 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 20.512 0.573 0.646 84 100.0 84 ERRSC SURFACE . . . . . . . . 27.409 0.552 0.631 127 100.0 127 ERRSC BURIED . . . . . . . . 32.957 0.695 0.737 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 25.116 0.589 0.660 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 18.757 0.594 0.663 152 100.0 152 ERRALL SURFACE . . . . . . . . 24.541 0.567 0.644 243 100.0 243 ERRALL BURIED . . . . . . . . 27.755 0.690 0.734 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 11 31 35 35 DISTCA CA (P) 0.00 0.00 5.71 31.43 88.57 35 DISTCA CA (RMS) 0.00 0.00 2.26 3.66 6.25 DISTCA ALL (N) 0 2 16 71 214 296 296 DISTALL ALL (P) 0.00 0.68 5.41 23.99 72.30 296 DISTALL ALL (RMS) 0.00 1.71 2.32 3.79 6.45 DISTALL END of the results output