####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS345_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS345_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 12 - 37 4.58 9.51 LONGEST_CONTINUOUS_SEGMENT: 26 13 - 38 4.84 9.18 LCS_AVERAGE: 66.69 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 12 - 27 1.47 8.81 LONGEST_CONTINUOUS_SEGMENT: 16 13 - 28 1.75 8.56 LCS_AVERAGE: 31.10 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 13 - 27 0.91 8.59 LCS_AVERAGE: 24.57 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 16 26 0 3 3 5 6 7 9 17 18 19 20 23 23 24 24 25 26 27 27 28 LCS_GDT F 13 F 13 15 16 26 0 10 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT H 14 H 14 15 16 26 6 12 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT Y 15 Y 15 15 16 26 4 12 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT T 16 T 16 15 16 26 4 12 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT V 17 V 17 15 16 26 4 11 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT T 18 T 18 15 16 26 6 12 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT D 19 D 19 15 16 26 6 12 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT I 20 I 20 15 16 26 6 12 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT K 21 K 21 15 16 26 6 12 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT D 22 D 22 15 16 26 5 12 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT L 23 L 23 15 16 26 5 11 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT T 24 T 24 15 16 26 6 12 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT K 25 K 25 15 16 26 5 12 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT L 26 L 26 15 16 26 3 12 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT G 27 G 27 15 16 26 3 11 16 16 16 16 17 18 19 20 22 23 23 24 25 25 27 28 31 32 LCS_GDT A 28 A 28 3 16 26 3 3 5 5 5 7 11 16 18 21 22 23 23 24 25 25 27 28 30 32 LCS_GDT I 29 I 29 3 4 26 3 3 5 6 8 10 14 17 18 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT Y 30 Y 30 3 4 26 3 5 5 6 8 10 13 17 18 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT D 31 D 31 4 4 26 4 5 5 5 5 10 12 16 18 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT K 32 K 32 4 4 26 4 5 5 5 5 7 9 12 13 15 16 19 22 23 25 25 26 28 31 32 LCS_GDT T 33 T 33 4 4 26 4 4 4 6 6 7 9 11 13 14 18 20 23 24 25 25 26 28 29 31 LCS_GDT K 34 K 34 4 5 26 4 4 4 6 6 7 12 16 18 21 22 23 23 24 25 25 26 28 31 32 LCS_GDT K 35 K 35 4 5 26 3 4 5 6 8 10 13 16 18 21 22 23 23 24 25 25 26 28 31 32 LCS_GDT Y 36 Y 36 4 5 26 3 4 5 6 8 12 14 17 18 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT W 37 W 37 4 5 26 3 12 16 16 16 16 16 18 19 21 22 23 23 24 25 25 27 28 31 32 LCS_GDT V 38 V 38 4 5 26 3 4 5 5 5 16 17 18 19 19 21 23 23 23 24 25 27 28 31 32 LCS_GDT Y 39 Y 39 4 8 15 4 5 6 7 7 8 9 12 13 17 21 23 23 23 23 25 27 28 31 32 LCS_GDT Q 40 Q 40 4 8 15 4 5 6 7 7 8 8 12 13 15 21 23 23 23 24 25 27 28 31 32 LCS_GDT G 41 G 41 4 8 15 4 5 5 8 10 16 17 18 19 19 21 23 23 23 24 25 27 28 31 32 LCS_GDT K 42 K 42 4 8 15 4 5 6 7 7 8 13 17 19 19 21 23 23 23 24 25 27 28 31 32 LCS_GDT P 43 P 43 4 8 15 3 4 5 6 6 8 8 10 14 19 21 23 23 23 24 25 27 28 31 32 LCS_GDT V 44 V 44 4 8 15 3 4 6 7 7 8 8 8 8 9 11 17 19 20 23 24 25 28 31 32 LCS_GDT M 45 M 45 4 8 14 3 5 6 7 7 8 8 8 8 9 9 17 19 20 22 24 26 28 31 32 LCS_GDT P 46 P 46 4 8 11 1 4 6 7 7 8 8 8 8 9 9 12 13 13 16 17 18 20 23 28 LCS_AVERAGE LCS_A: 40.79 ( 24.57 31.10 66.69 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 12 16 16 16 16 17 18 19 21 22 23 23 24 25 25 27 28 31 32 GDT PERCENT_AT 17.14 34.29 45.71 45.71 45.71 45.71 48.57 51.43 54.29 60.00 62.86 65.71 65.71 68.57 71.43 71.43 77.14 80.00 88.57 91.43 GDT RMS_LOCAL 0.36 0.77 0.93 0.93 0.93 0.93 2.01 2.10 2.43 3.35 3.48 3.34 3.34 3.93 4.29 4.29 5.23 5.61 6.52 6.62 GDT RMS_ALL_AT 8.50 8.46 8.57 8.57 8.57 8.57 9.04 8.93 9.09 8.91 9.15 9.65 9.65 9.07 9.57 9.57 7.97 7.73 7.44 7.44 # Checking swapping # possible swapping detected: D 22 D 22 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 5.696 0 0.163 0.980 8.653 23.095 18.143 LGA F 13 F 13 2.662 0 0.629 1.252 5.111 51.905 50.303 LGA H 14 H 14 1.600 0 0.143 1.114 7.220 79.405 50.619 LGA Y 15 Y 15 2.092 0 0.153 0.805 6.966 62.857 48.730 LGA T 16 T 16 1.522 0 0.186 0.178 1.749 86.190 81.701 LGA V 17 V 17 1.304 0 0.119 0.245 2.699 81.429 72.109 LGA T 18 T 18 1.123 0 0.428 0.519 1.823 83.810 82.789 LGA D 19 D 19 0.729 0 0.084 0.338 1.526 90.595 89.524 LGA I 20 I 20 0.425 0 0.698 1.019 3.811 76.667 80.357 LGA K 21 K 21 0.635 0 0.289 1.295 6.137 90.833 65.608 LGA D 22 D 22 0.741 0 0.090 1.317 4.255 90.476 74.940 LGA L 23 L 23 1.014 0 0.080 0.304 2.466 83.690 78.333 LGA T 24 T 24 1.563 0 0.060 0.058 2.056 77.143 74.150 LGA K 25 K 25 1.218 0 0.087 0.970 2.261 81.429 75.820 LGA L 26 L 26 1.115 0 0.118 0.464 1.313 85.952 85.952 LGA G 27 G 27 1.244 0 0.209 0.209 3.358 65.714 65.714 LGA A 28 A 28 7.864 0 0.540 0.572 10.164 10.714 8.571 LGA I 29 I 29 10.629 0 0.573 1.618 15.146 0.357 0.179 LGA Y 30 Y 30 11.102 0 0.601 0.534 13.705 0.000 0.000 LGA D 31 D 31 13.889 0 0.556 1.111 17.697 0.000 0.000 LGA K 32 K 32 20.290 0 0.076 1.132 22.925 0.000 0.000 LGA T 33 T 33 20.292 0 0.038 0.555 23.444 0.000 0.000 LGA K 34 K 34 15.439 0 0.028 0.499 16.986 0.000 0.000 LGA K 35 K 35 14.784 0 0.171 0.885 22.951 0.000 0.000 LGA Y 36 Y 36 9.269 0 0.307 1.131 11.216 10.238 7.817 LGA W 37 W 37 3.100 0 0.320 0.589 12.878 43.333 18.367 LGA V 38 V 38 4.087 0 0.569 1.502 7.395 33.333 26.599 LGA Y 39 Y 39 7.732 0 0.030 1.047 19.425 15.000 5.040 LGA Q 40 Q 40 8.150 0 0.070 0.774 12.284 8.214 3.862 LGA G 41 G 41 4.947 0 0.438 0.438 5.877 26.310 26.310 LGA K 42 K 42 6.393 0 0.252 1.132 9.398 17.262 9.735 LGA P 43 P 43 6.888 0 0.262 0.958 7.829 11.905 15.714 LGA V 44 V 44 11.091 0 0.287 0.303 14.485 0.119 0.068 LGA M 45 M 45 13.575 0 0.424 1.223 17.807 0.000 0.000 LGA P 46 P 46 17.250 0 0.676 0.623 20.259 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 7.401 7.429 8.213 39.656 34.773 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 18 2.10 50.714 47.174 0.818 LGA_LOCAL RMSD: 2.102 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.926 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 7.401 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.643166 * X + -0.418557 * Y + -0.641208 * Z + -60.410950 Y_new = 0.065787 * X + -0.864493 * Y + 0.498321 * Z + 29.232956 Z_new = -0.762896 * X + 0.278320 * Y + 0.583548 * Z + 23.015135 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.039661 0.867780 0.445033 [DEG: 174.1598 49.7202 25.4985 ] ZXZ: -2.231454 0.947706 -1.220980 [DEG: -127.8529 54.2995 -69.9570 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS345_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS345_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 18 2.10 47.174 7.40 REMARK ---------------------------------------------------------- MOLECULE T0548TS345_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 87 N HIS 12 -35.401 -26.434 32.958 1.00 0.00 N ATOM 88 CA HIS 12 -36.664 -26.480 32.366 1.00 0.00 C ATOM 89 C HIS 12 -37.527 -25.371 31.817 1.00 0.00 C ATOM 90 O HIS 12 -37.016 -24.247 31.795 1.00 0.00 O ATOM 91 CB HIS 12 -37.131 -27.756 33.054 1.00 0.00 C ATOM 92 CG HIS 12 -38.054 -28.562 32.218 1.00 0.00 C ATOM 93 ND1 HIS 12 -37.609 -29.563 31.390 1.00 0.00 N ATOM 94 CD2 HIS 12 -39.383 -28.448 31.999 1.00 0.00 C ATOM 95 CE1 HIS 12 -38.627 -30.030 30.688 1.00 0.00 C ATOM 96 NE2 HIS 12 -39.713 -29.367 31.038 1.00 0.00 N ATOM 97 N PHE 13 -38.675 -25.712 31.238 1.00 0.00 N ATOM 98 CA PHE 13 -39.579 -24.726 30.676 1.00 0.00 C ATOM 99 C PHE 13 -39.885 -23.696 31.805 1.00 0.00 C ATOM 100 O PHE 13 -40.553 -22.682 31.600 1.00 0.00 O ATOM 101 CB PHE 13 -40.366 -25.844 30.012 1.00 0.00 C ATOM 102 CG PHE 13 -41.328 -25.402 28.949 1.00 0.00 C ATOM 103 CD1 PHE 13 -40.904 -24.760 27.851 1.00 0.00 C ATOM 104 CD2 PHE 13 -42.665 -25.712 29.067 1.00 0.00 C ATOM 105 CE1 PHE 13 -41.814 -24.354 26.840 1.00 0.00 C ATOM 106 CE2 PHE 13 -43.562 -25.340 28.071 1.00 0.00 C ATOM 107 CZ PHE 13 -43.125 -24.680 26.964 1.00 0.00 C ATOM 108 N HIS 14 -39.437 -24.072 32.995 1.00 0.00 N ATOM 109 CA HIS 14 -39.864 -23.270 34.173 1.00 0.00 C ATOM 110 C HIS 14 -39.010 -21.973 33.792 1.00 0.00 C ATOM 111 O HIS 14 -37.831 -21.712 34.034 1.00 0.00 O ATOM 112 CB HIS 14 -39.231 -23.834 35.450 1.00 0.00 C ATOM 113 CG HIS 14 -39.604 -25.274 35.663 1.00 0.00 C ATOM 114 ND1 HIS 14 -38.728 -26.192 36.186 1.00 0.00 N ATOM 115 CD2 HIS 14 -40.768 -25.925 35.387 1.00 0.00 C ATOM 116 CE1 HIS 14 -39.345 -27.364 36.244 1.00 0.00 C ATOM 117 NE2 HIS 14 -40.566 -27.229 35.770 1.00 0.00 N ATOM 118 N TYR 15 -39.815 -21.137 33.142 1.00 0.00 N ATOM 119 CA TYR 15 -39.805 -19.789 32.648 1.00 0.00 C ATOM 120 C TYR 15 -39.986 -19.059 34.079 1.00 0.00 C ATOM 121 O TYR 15 -41.006 -19.216 34.759 1.00 0.00 O ATOM 122 CB TYR 15 -41.043 -19.137 32.015 1.00 0.00 C ATOM 123 CG TYR 15 -40.698 -18.377 30.756 1.00 0.00 C ATOM 124 CD1 TYR 15 -40.296 -19.056 29.604 1.00 0.00 C ATOM 125 CD2 TYR 15 -40.715 -16.986 30.723 1.00 0.00 C ATOM 126 CE1 TYR 15 -39.915 -18.368 28.450 1.00 0.00 C ATOM 127 CE2 TYR 15 -40.333 -16.286 29.573 1.00 0.00 C ATOM 128 CZ TYR 15 -39.934 -16.982 28.445 1.00 0.00 C ATOM 129 OH TYR 15 -39.541 -16.278 27.327 1.00 0.00 H ATOM 130 N THR 16 -38.984 -18.322 34.460 1.00 0.00 N ATOM 131 CA THR 16 -38.424 -17.526 35.371 1.00 0.00 C ATOM 132 C THR 16 -38.856 -15.990 35.459 1.00 0.00 C ATOM 133 O THR 16 -39.109 -15.281 34.478 1.00 0.00 O ATOM 134 CB THR 16 -36.913 -17.574 35.650 1.00 0.00 C ATOM 135 OG1 THR 16 -36.249 -16.589 34.794 1.00 0.00 O ATOM 136 CG2 THR 16 -36.223 -18.893 35.422 1.00 0.00 C ATOM 137 N VAL 17 -38.814 -15.537 36.710 1.00 0.00 N ATOM 138 CA VAL 17 -39.089 -14.144 36.975 1.00 0.00 C ATOM 139 C VAL 17 -38.602 -13.107 35.888 1.00 0.00 C ATOM 140 O VAL 17 -39.446 -12.559 35.190 1.00 0.00 O ATOM 141 CB VAL 17 -39.397 -13.828 38.457 1.00 0.00 C ATOM 142 CG1 VAL 17 -39.498 -12.330 38.677 1.00 0.00 C ATOM 143 CG2 VAL 17 -40.694 -14.502 38.870 1.00 0.00 C ATOM 144 N THR 18 -37.298 -12.818 35.755 1.00 0.00 N ATOM 145 CA THR 18 -36.898 -11.952 34.779 1.00 0.00 C ATOM 146 C THR 18 -36.914 -12.718 33.455 1.00 0.00 C ATOM 147 O THR 18 -36.008 -12.582 32.631 1.00 0.00 O ATOM 148 CB THR 18 -35.365 -11.937 34.775 1.00 0.00 C ATOM 149 OG1 THR 18 -34.882 -11.485 36.030 1.00 0.00 O ATOM 150 CG2 THR 18 -34.846 -11.030 33.659 1.00 0.00 C ATOM 151 N ASP 19 -37.901 -13.613 33.341 1.00 0.00 N ATOM 152 CA ASP 19 -38.146 -14.459 32.214 1.00 0.00 C ATOM 153 C ASP 19 -39.501 -14.006 31.695 1.00 0.00 C ATOM 154 O ASP 19 -39.779 -13.955 30.501 1.00 0.00 O ATOM 155 CB ASP 19 -38.288 -15.966 32.450 1.00 0.00 C ATOM 156 CG ASP 19 -36.948 -16.678 32.502 1.00 0.00 C ATOM 157 OD1 ASP 19 -35.901 -15.995 32.477 1.00 0.00 O ATOM 158 OD2 ASP 19 -36.944 -17.927 32.567 1.00 0.00 O ATOM 159 N ILE 20 -40.364 -13.653 32.648 1.00 0.00 N ATOM 160 CA ILE 20 -41.750 -13.250 32.188 1.00 0.00 C ATOM 161 C ILE 20 -41.523 -11.637 33.301 1.00 0.00 C ATOM 162 O ILE 20 -41.603 -11.849 34.519 1.00 0.00 O ATOM 163 CB ILE 20 -42.727 -13.153 33.377 1.00 0.00 C ATOM 164 CG1 ILE 20 -42.779 -14.484 34.133 1.00 0.00 C ATOM 165 CG2 ILE 20 -44.114 -12.762 32.873 1.00 0.00 C ATOM 166 CD1 ILE 20 -43.173 -15.633 33.265 1.00 0.00 C ATOM 167 N LYS 21 -41.384 -10.365 32.892 1.00 0.00 N ATOM 168 CA LYS 21 -40.783 -9.618 31.643 1.00 0.00 C ATOM 169 C LYS 21 -40.258 -9.736 30.185 1.00 0.00 C ATOM 170 O LYS 21 -40.450 -8.987 29.229 1.00 0.00 O ATOM 171 CB LYS 21 -39.989 -8.763 32.637 1.00 0.00 C ATOM 172 CG LYS 21 -40.743 -8.559 33.945 1.00 0.00 C ATOM 173 CD LYS 21 -40.009 -7.670 34.936 1.00 0.00 C ATOM 174 CE LYS 21 -40.863 -7.460 36.183 1.00 0.00 C ATOM 175 NZ LYS 21 -40.209 -6.573 37.185 1.00 0.00 N ATOM 176 N ASP 22 -39.533 -10.830 30.162 1.00 0.00 N ATOM 177 CA ASP 22 -38.780 -11.266 28.867 1.00 0.00 C ATOM 178 C ASP 22 -39.842 -11.806 27.983 1.00 0.00 C ATOM 179 O ASP 22 -39.567 -11.912 26.784 1.00 0.00 O ATOM 180 CB ASP 22 -37.474 -11.860 28.290 1.00 0.00 C ATOM 181 CG ASP 22 -37.628 -13.293 27.724 1.00 0.00 C ATOM 182 OD1 ASP 22 -38.225 -14.155 28.375 1.00 0.00 O ATOM 183 OD2 ASP 22 -37.145 -13.546 26.618 1.00 0.00 O ATOM 184 N LEU 23 -41.061 -12.015 28.470 1.00 0.00 N ATOM 185 CA LEU 23 -42.236 -12.461 27.829 1.00 0.00 C ATOM 186 C LEU 23 -42.899 -11.211 27.118 1.00 0.00 C ATOM 187 O LEU 23 -43.107 -11.095 25.911 1.00 0.00 O ATOM 188 CB LEU 23 -42.996 -13.531 28.613 1.00 0.00 C ATOM 189 CG LEU 23 -42.391 -14.778 29.211 1.00 0.00 C ATOM 190 CD1 LEU 23 -43.318 -15.356 30.284 1.00 0.00 C ATOM 191 CD2 LEU 23 -42.135 -15.861 28.183 1.00 0.00 C ATOM 192 N THR 24 -43.258 -10.280 27.995 1.00 0.00 N ATOM 193 CA THR 24 -44.029 -9.130 27.472 1.00 0.00 C ATOM 194 C THR 24 -43.320 -8.376 26.340 1.00 0.00 C ATOM 195 O THR 24 -43.968 -7.800 25.469 1.00 0.00 O ATOM 196 CB THR 24 -44.431 -8.166 28.617 1.00 0.00 C ATOM 197 OG1 THR 24 -43.258 -7.603 29.213 1.00 0.00 O ATOM 198 CG2 THR 24 -45.208 -8.905 29.683 1.00 0.00 C ATOM 199 N LYS 25 -41.994 -8.409 26.355 1.00 0.00 N ATOM 200 CA LYS 25 -41.205 -7.715 25.361 1.00 0.00 C ATOM 201 C LYS 25 -41.150 -8.355 23.934 1.00 0.00 C ATOM 202 O LYS 25 -41.155 -7.726 22.876 1.00 0.00 O ATOM 203 CB LYS 25 -39.794 -7.484 25.880 1.00 0.00 C ATOM 204 CG LYS 25 -39.141 -6.173 25.413 1.00 0.00 C ATOM 205 CD LYS 25 -37.795 -5.968 26.037 1.00 0.00 C ATOM 206 CE LYS 25 -37.250 -4.556 25.857 1.00 0.00 C ATOM 207 NZ LYS 25 -37.879 -3.771 27.053 1.00 0.00 N ATOM 208 N LEU 26 -41.025 -9.663 23.978 1.00 0.00 N ATOM 209 CA LEU 26 -41.085 -10.417 22.694 1.00 0.00 C ATOM 210 C LEU 26 -42.560 -10.946 22.663 1.00 0.00 C ATOM 211 O LEU 26 -42.976 -11.630 21.706 1.00 0.00 O ATOM 212 CB LEU 26 -40.669 -11.866 22.988 1.00 0.00 C ATOM 213 CG LEU 26 -41.462 -12.962 22.233 1.00 0.00 C ATOM 214 CD1 LEU 26 -41.009 -13.005 20.783 1.00 0.00 C ATOM 215 CD2 LEU 26 -41.263 -14.330 22.880 1.00 0.00 C ATOM 216 N GLY 27 -43.389 -10.602 23.679 1.00 0.00 N ATOM 217 CA GLY 27 -44.757 -10.688 23.636 1.00 0.00 C ATOM 218 C GLY 27 -45.454 -9.619 22.762 1.00 0.00 C ATOM 219 O GLY 27 -46.570 -9.845 22.335 1.00 0.00 O ATOM 220 N ALA 28 -44.819 -8.473 22.542 1.00 0.00 N ATOM 221 CA ALA 28 -45.294 -7.457 21.709 1.00 0.00 C ATOM 222 C ALA 28 -45.538 -8.357 20.418 1.00 0.00 C ATOM 223 O ALA 28 -46.545 -8.393 19.697 1.00 0.00 O ATOM 224 CB ALA 28 -44.786 -6.026 21.553 1.00 0.00 C ATOM 225 N ILE 29 -44.434 -9.037 20.169 1.00 0.00 N ATOM 226 CA ILE 29 -44.523 -9.821 18.835 1.00 0.00 C ATOM 227 C ILE 29 -45.473 -11.047 18.790 1.00 0.00 C ATOM 228 O ILE 29 -46.426 -11.130 18.000 1.00 0.00 O ATOM 229 CB ILE 29 -43.085 -10.238 18.467 1.00 0.00 C ATOM 230 CG1 ILE 29 -42.293 -9.024 17.964 1.00 0.00 C ATOM 231 CG2 ILE 29 -43.089 -11.343 17.409 1.00 0.00 C ATOM 232 CD1 ILE 29 -42.915 -8.338 16.752 1.00 0.00 C ATOM 233 N TYR 30 -45.333 -11.967 19.908 1.00 0.00 N ATOM 234 CA TYR 30 -46.115 -13.100 19.912 1.00 0.00 C ATOM 235 C TYR 30 -47.396 -13.504 19.101 1.00 0.00 C ATOM 236 O TYR 30 -47.480 -14.530 18.400 1.00 0.00 O ATOM 237 CB TYR 30 -45.641 -13.405 21.380 1.00 0.00 C ATOM 238 CG TYR 30 -45.206 -14.827 21.583 1.00 0.00 C ATOM 239 CD1 TYR 30 -44.169 -15.364 20.823 1.00 0.00 C ATOM 240 CD2 TYR 30 -45.823 -15.647 22.525 1.00 0.00 C ATOM 241 CE1 TYR 30 -43.750 -16.688 20.975 1.00 0.00 C ATOM 242 CE2 TYR 30 -45.411 -16.969 22.701 1.00 0.00 C ATOM 243 CZ TYR 30 -44.380 -17.498 21.920 1.00 0.00 C ATOM 244 OH TYR 30 -43.961 -18.829 22.099 1.00 0.00 H ATOM 245 N ASP 31 -48.368 -12.603 19.285 1.00 0.00 N ATOM 246 CA ASP 31 -49.663 -12.717 18.606 1.00 0.00 C ATOM 247 C ASP 31 -49.389 -12.743 17.138 1.00 0.00 C ATOM 248 O ASP 31 -50.195 -13.254 16.366 1.00 0.00 O ATOM 249 CB ASP 31 -50.589 -11.471 18.662 1.00 0.00 C ATOM 250 CG ASP 31 -51.720 -11.557 19.778 1.00 0.00 C ATOM 251 OD1 ASP 31 -51.729 -12.492 20.610 1.00 0.00 O ATOM 252 OD2 ASP 31 -52.583 -10.645 19.818 1.00 0.00 O ATOM 253 N LYS 32 -48.164 -12.402 16.735 1.00 0.00 N ATOM 254 CA LYS 32 -47.728 -12.537 15.342 1.00 0.00 C ATOM 255 C LYS 32 -47.355 -14.061 15.255 1.00 0.00 C ATOM 256 O LYS 32 -47.748 -14.793 14.368 1.00 0.00 O ATOM 257 CB LYS 32 -46.514 -11.621 15.172 1.00 0.00 C ATOM 258 CG LYS 32 -45.765 -11.736 13.864 1.00 0.00 C ATOM 259 CD LYS 32 -44.499 -10.853 13.895 1.00 0.00 C ATOM 260 CE LYS 32 -43.510 -11.284 14.998 1.00 0.00 C ATOM 261 NZ LYS 32 -42.319 -10.377 15.171 1.00 0.00 N ATOM 262 N THR 33 -46.543 -14.496 16.179 1.00 0.00 N ATOM 263 CA THR 33 -46.163 -15.908 16.136 1.00 0.00 C ATOM 264 C THR 33 -47.253 -16.890 16.592 1.00 0.00 C ATOM 265 O THR 33 -47.403 -18.024 16.150 1.00 0.00 O ATOM 266 CB THR 33 -44.698 -16.044 16.606 1.00 0.00 C ATOM 267 OG1 THR 33 -44.633 -15.913 18.038 1.00 0.00 O ATOM 268 CG2 THR 33 -43.796 -15.016 15.946 1.00 0.00 C ATOM 269 N LYS 34 -47.954 -16.413 17.617 1.00 0.00 N ATOM 270 CA LYS 34 -48.968 -17.167 18.369 1.00 0.00 C ATOM 271 C LYS 34 -48.418 -18.362 19.112 1.00 0.00 C ATOM 272 O LYS 34 -49.119 -19.011 19.893 1.00 0.00 O ATOM 273 CB LYS 34 -50.230 -17.232 17.498 1.00 0.00 C ATOM 274 CG LYS 34 -50.767 -15.854 17.282 1.00 0.00 C ATOM 275 CD LYS 34 -52.032 -15.765 16.499 1.00 0.00 C ATOM 276 CE LYS 34 -52.535 -14.351 16.699 1.00 0.00 C ATOM 277 NZ LYS 34 -53.766 -14.086 15.963 1.00 0.00 N ATOM 278 N LYS 35 -47.144 -18.654 18.849 1.00 0.00 N ATOM 279 CA LYS 35 -46.462 -19.814 19.435 1.00 0.00 C ATOM 280 C LYS 35 -46.750 -19.644 20.957 1.00 0.00 C ATOM 281 O LYS 35 -46.877 -20.647 21.617 1.00 0.00 O ATOM 282 CB LYS 35 -45.147 -19.124 19.060 1.00 0.00 C ATOM 283 CG LYS 35 -43.984 -19.514 19.962 1.00 0.00 C ATOM 284 CD LYS 35 -42.705 -18.788 19.567 1.00 0.00 C ATOM 285 CE LYS 35 -42.890 -17.278 19.684 1.00 0.00 C ATOM 286 NZ LYS 35 -41.638 -16.491 19.417 1.00 0.00 N ATOM 287 N TYR 36 -46.828 -18.440 21.466 1.00 0.00 N ATOM 288 CA TYR 36 -47.462 -18.418 22.822 1.00 0.00 C ATOM 289 C TYR 36 -46.726 -19.276 23.745 1.00 0.00 C ATOM 290 O TYR 36 -47.148 -20.405 23.954 1.00 0.00 O ATOM 291 CB TYR 36 -48.721 -18.988 23.492 1.00 0.00 C ATOM 292 CG TYR 36 -48.729 -19.019 25.016 1.00 0.00 C ATOM 293 CD1 TYR 36 -48.455 -17.878 25.770 1.00 0.00 C ATOM 294 CD2 TYR 36 -49.057 -20.191 25.697 1.00 0.00 C ATOM 295 CE1 TYR 36 -48.510 -17.906 27.166 1.00 0.00 C ATOM 296 CE2 TYR 36 -49.116 -20.229 27.086 1.00 0.00 C ATOM 297 CZ TYR 36 -48.843 -19.087 27.815 1.00 0.00 C ATOM 298 OH TYR 36 -48.907 -19.136 29.189 1.00 0.00 H ATOM 299 N TRP 37 -45.590 -18.841 24.275 1.00 0.00 N ATOM 300 CA TRP 37 -44.817 -19.747 25.202 1.00 0.00 C ATOM 301 C TRP 37 -46.138 -18.984 26.963 1.00 0.00 C ATOM 302 O TRP 37 -46.683 -17.882 26.879 1.00 0.00 O ATOM 303 CB TRP 37 -43.350 -19.309 25.204 1.00 0.00 C ATOM 304 CG TRP 37 -42.750 -19.391 23.837 1.00 0.00 C ATOM 305 CD1 TRP 37 -42.327 -18.353 23.059 1.00 0.00 C ATOM 306 CD2 TRP 37 -42.547 -20.583 23.064 1.00 0.00 C ATOM 307 NE1 TRP 37 -41.875 -18.825 21.847 1.00 0.00 N ATOM 308 CE2 TRP 37 -42.000 -20.193 21.825 1.00 0.00 C ATOM 309 CE3 TRP 37 -42.780 -21.948 23.297 1.00 0.00 C ATOM 310 CZ2 TRP 37 -41.677 -21.111 20.820 1.00 0.00 C ATOM 311 CZ3 TRP 37 -42.459 -22.867 22.298 1.00 0.00 C ATOM 312 CH2 TRP 37 -41.915 -22.441 21.074 1.00 0.00 H ATOM 313 N VAL 38 -46.152 -19.702 28.114 1.00 0.00 N ATOM 314 CA VAL 38 -46.141 -21.042 28.518 1.00 0.00 C ATOM 315 C VAL 38 -45.881 -22.507 28.360 1.00 0.00 C ATOM 316 O VAL 38 -45.316 -23.084 29.297 1.00 0.00 O ATOM 317 CB VAL 38 -46.774 -20.496 29.797 1.00 0.00 C ATOM 318 CG1 VAL 38 -47.411 -19.124 29.561 1.00 0.00 C ATOM 319 CG2 VAL 38 -47.785 -21.499 30.345 1.00 0.00 C ATOM 320 N TYR 39 -46.053 -23.030 27.130 1.00 0.00 N ATOM 321 CA TYR 39 -45.623 -24.326 26.678 1.00 0.00 C ATOM 322 C TYR 39 -45.085 -24.176 25.212 1.00 0.00 C ATOM 323 O TYR 39 -45.683 -23.465 24.402 1.00 0.00 O ATOM 324 CB TYR 39 -46.598 -25.442 26.949 1.00 0.00 C ATOM 325 CG TYR 39 -46.657 -25.699 28.400 1.00 0.00 C ATOM 326 CD1 TYR 39 -45.719 -26.512 28.989 1.00 0.00 C ATOM 327 CD2 TYR 39 -47.637 -25.096 29.201 1.00 0.00 C ATOM 328 CE1 TYR 39 -45.728 -26.716 30.344 1.00 0.00 C ATOM 329 CE2 TYR 39 -47.654 -25.292 30.565 1.00 0.00 C ATOM 330 CZ TYR 39 -46.691 -26.099 31.116 1.00 0.00 C ATOM 331 OH TYR 39 -46.639 -26.310 32.456 1.00 0.00 H ATOM 332 N GLN 40 -44.018 -24.907 24.914 1.00 0.00 N ATOM 333 CA GLN 40 -43.459 -24.877 23.606 1.00 0.00 C ATOM 334 C GLN 40 -44.526 -25.729 22.743 1.00 0.00 C ATOM 335 O GLN 40 -44.190 -26.447 21.801 1.00 0.00 O ATOM 336 CB GLN 40 -42.497 -26.026 23.379 1.00 0.00 C ATOM 337 CG GLN 40 -41.807 -25.998 22.043 1.00 0.00 C ATOM 338 CD GLN 40 -40.645 -26.944 22.010 1.00 0.00 C ATOM 339 OE1 GLN 40 -40.653 -27.915 21.272 1.00 0.00 O ATOM 340 NE2 GLN 40 -39.642 -26.637 22.785 1.00 0.00 N ATOM 341 N GLY 41 -45.746 -25.174 22.808 1.00 0.00 N ATOM 342 CA GLY 41 -46.858 -25.850 22.221 1.00 0.00 C ATOM 343 C GLY 41 -46.643 -27.124 23.147 1.00 0.00 C ATOM 344 O GLY 41 -47.698 -27.214 23.742 1.00 0.00 O ATOM 345 N LYS 42 -45.557 -27.822 23.496 1.00 0.00 N ATOM 346 CA LYS 42 -45.992 -29.011 24.128 1.00 0.00 C ATOM 347 C LYS 42 -44.671 -29.061 25.327 1.00 0.00 C ATOM 348 O LYS 42 -43.951 -28.220 25.878 1.00 0.00 O ATOM 349 CB LYS 42 -45.909 -29.997 22.958 1.00 0.00 C ATOM 350 CG LYS 42 -46.909 -31.145 23.089 1.00 0.00 C ATOM 351 CD LYS 42 -47.418 -31.566 21.710 1.00 0.00 C ATOM 352 CE LYS 42 -46.320 -32.260 20.919 1.00 0.00 C ATOM 353 NZ LYS 42 -45.732 -33.381 21.704 1.00 0.00 N ATOM 354 N PRO 43 -44.520 -30.389 25.377 1.00 0.00 N ATOM 355 CA PRO 43 -43.511 -31.068 26.146 1.00 0.00 C ATOM 356 C PRO 43 -44.320 -30.631 27.348 1.00 0.00 C ATOM 357 O PRO 43 -43.963 -29.490 27.994 1.00 0.00 O ATOM 358 CB PRO 43 -42.084 -30.735 25.644 1.00 0.00 C ATOM 359 CG PRO 43 -41.832 -31.692 24.500 1.00 0.00 C ATOM 360 CD PRO 43 -42.908 -32.783 24.580 1.00 0.00 C ATOM 361 N VAL 44 -45.258 -31.475 27.445 1.00 0.00 N ATOM 362 CA VAL 44 -46.459 -30.968 28.540 1.00 0.00 C ATOM 363 C VAL 44 -46.009 -31.893 29.541 1.00 0.00 C ATOM 364 O VAL 44 -45.374 -32.879 29.179 1.00 0.00 O ATOM 365 CB VAL 44 -47.928 -31.099 28.065 1.00 0.00 C ATOM 366 CG1 VAL 44 -48.858 -30.727 29.191 1.00 0.00 C ATOM 367 CG2 VAL 44 -48.216 -30.152 26.912 1.00 0.00 C ATOM 368 N MET 45 -46.171 -31.579 30.824 1.00 0.00 N ATOM 369 CA MET 45 -45.767 -32.492 31.943 1.00 0.00 C ATOM 370 C MET 45 -46.704 -32.743 33.054 1.00 0.00 C ATOM 371 O MET 45 -47.718 -33.376 32.668 1.00 0.00 O ATOM 372 CB MET 45 -44.246 -32.611 32.095 1.00 0.00 C ATOM 373 CG MET 45 -43.509 -31.368 32.434 1.00 0.00 C ATOM 374 SD MET 45 -41.769 -31.801 32.760 1.00 0.00 S ATOM 375 CE MET 45 -41.828 -32.583 34.413 1.00 0.00 C ATOM 376 N PRO 46 -46.386 -32.495 34.318 1.00 0.00 N ATOM 377 CA PRO 46 -47.185 -32.834 35.452 1.00 0.00 C ATOM 378 C PRO 46 -48.352 -32.059 35.855 1.00 0.00 C ATOM 379 O PRO 46 -48.898 -32.236 36.946 1.00 0.00 O ATOM 380 CB PRO 46 -46.148 -32.689 36.542 1.00 0.00 C ATOM 381 CG PRO 46 -45.003 -31.966 36.045 1.00 0.00 C ATOM 382 CD PRO 46 -45.075 -31.944 34.555 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 77.49 55.9 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 79.69 55.9 34 100.0 34 ARMSMC SURFACE . . . . . . . . 76.66 53.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 81.29 66.7 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.94 25.0 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 89.61 20.7 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 84.34 35.3 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 91.41 22.2 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 74.22 40.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 60.68 48.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 58.57 47.6 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 55.93 61.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 62.39 50.0 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 46.22 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.19 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 88.97 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 90.73 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 95.19 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.59 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 81.59 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 111.59 0.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 81.59 50.0 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.40 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.40 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2114 CRMSCA SECONDARY STRUCTURE . . 4.90 17 100.0 17 CRMSCA SURFACE . . . . . . . . 7.52 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.79 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.51 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 5.23 85 100.0 85 CRMSMC SURFACE . . . . . . . . 7.60 143 100.0 143 CRMSMC BURIED . . . . . . . . 7.05 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.90 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 8.64 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 7.71 84 100.0 84 CRMSSC SURFACE . . . . . . . . 9.13 127 100.0 127 CRMSSC BURIED . . . . . . . . 7.79 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.24 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 6.69 152 100.0 152 CRMSALL SURFACE . . . . . . . . 8.42 243 100.0 243 CRMSALL BURIED . . . . . . . . 7.35 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.687 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 4.389 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 6.826 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 6.014 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.782 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 4.685 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 6.866 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 6.382 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.984 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 7.721 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 6.763 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 8.191 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 7.081 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.394 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 5.815 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 7.543 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 6.710 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 2 5 11 31 35 35 DISTCA CA (P) 2.86 5.71 14.29 31.43 88.57 35 DISTCA CA (RMS) 0.81 1.16 1.93 3.37 6.48 DISTCA ALL (N) 1 9 26 86 237 296 296 DISTALL ALL (P) 0.34 3.04 8.78 29.05 80.07 296 DISTALL ALL (RMS) 0.81 1.44 2.22 3.61 6.41 DISTALL END of the results output