####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 30 ( 246), selected 30 , name T0548TS331_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 30 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS331_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 17 - 37 4.81 11.61 LONGEST_CONTINUOUS_SEGMENT: 21 18 - 38 4.80 10.21 LCS_AVERAGE: 54.67 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 18 - 27 1.71 14.93 LCS_AVERAGE: 21.33 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 18 - 26 0.52 16.53 LCS_AVERAGE: 16.00 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 30 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 17 V 17 3 9 21 0 3 3 3 4 6 8 9 10 12 14 17 19 19 20 21 22 22 22 23 LCS_GDT T 18 T 18 9 10 21 8 9 9 9 9 9 12 13 15 15 17 17 19 20 21 22 23 24 26 26 LCS_GDT D 19 D 19 9 10 21 8 9 9 9 9 9 12 13 15 15 17 19 21 21 23 23 23 24 26 26 LCS_GDT I 20 I 20 9 10 21 8 9 9 9 9 9 12 13 15 15 17 19 21 21 23 23 23 24 26 26 LCS_GDT K 21 K 21 9 10 21 8 9 9 9 9 9 12 13 15 15 17 19 21 21 23 23 23 24 26 26 LCS_GDT D 22 D 22 9 10 21 8 9 9 9 9 9 12 13 15 15 17 19 21 21 23 23 23 24 26 26 LCS_GDT L 23 L 23 9 10 21 8 9 9 9 9 9 12 13 15 15 17 19 21 21 23 23 23 24 26 26 LCS_GDT T 24 T 24 9 10 21 8 9 9 9 9 9 12 13 15 15 17 19 21 21 23 23 23 24 26 26 LCS_GDT K 25 K 25 9 10 21 8 9 9 9 9 9 12 13 15 15 17 19 21 21 23 23 23 24 26 26 LCS_GDT L 26 L 26 9 10 21 4 9 9 9 9 9 12 13 15 15 17 18 19 20 23 23 23 24 26 26 LCS_GDT G 27 G 27 5 10 21 3 4 5 5 6 9 12 13 15 15 17 18 19 21 23 23 23 24 26 26 LCS_GDT A 28 A 28 5 6 21 3 4 5 5 6 9 12 13 15 15 17 18 21 21 23 23 23 24 26 26 LCS_GDT I 29 I 29 5 6 21 3 4 5 5 5 7 8 10 13 15 17 19 21 21 23 23 23 24 26 26 LCS_GDT Y 30 Y 30 3 3 21 3 3 3 4 6 8 9 13 15 15 17 19 21 21 23 23 23 24 26 26 LCS_GDT D 31 D 31 5 5 21 5 5 5 5 5 8 9 13 15 15 17 19 21 21 23 23 23 24 26 26 LCS_GDT K 32 K 32 5 5 21 5 5 5 5 5 7 7 10 13 14 17 19 21 21 23 23 23 24 26 26 LCS_GDT T 33 T 33 5 5 21 5 5 5 5 5 6 6 7 9 11 13 15 17 19 20 21 22 24 26 26 LCS_GDT K 34 K 34 5 7 21 5 5 5 5 6 7 7 9 9 15 16 18 21 21 23 23 23 24 26 26 LCS_GDT K 35 K 35 5 7 21 5 5 5 6 7 9 12 13 15 15 17 19 21 21 23 23 23 24 26 26 LCS_GDT Y 36 Y 36 4 7 21 3 4 4 6 7 8 10 13 15 15 17 19 21 21 23 23 23 24 26 26 LCS_GDT W 37 W 37 4 7 21 3 4 4 6 6 7 8 10 12 13 14 19 21 21 23 23 23 24 26 26 LCS_GDT V 38 V 38 4 7 21 3 3 5 6 7 8 9 10 12 14 16 19 21 21 23 23 23 24 26 26 LCS_GDT Y 39 Y 39 3 7 15 3 3 5 6 7 8 9 10 12 14 15 19 21 21 23 23 23 24 26 26 LCS_GDT Q 40 Q 40 4 7 15 3 3 5 6 7 8 9 10 12 14 15 19 21 21 23 23 23 24 26 26 LCS_GDT G 41 G 41 4 6 15 3 4 5 5 5 7 8 10 12 14 15 19 21 21 23 23 23 24 26 26 LCS_GDT K 42 K 42 4 6 15 3 4 5 5 7 8 9 10 12 14 15 19 21 21 23 23 23 24 26 26 LCS_GDT P 43 P 43 4 6 15 3 4 5 5 5 7 7 7 7 8 9 10 13 15 18 19 23 24 26 26 LCS_GDT V 44 V 44 4 6 15 3 4 5 5 5 7 7 7 7 8 9 12 13 15 16 16 17 17 18 18 LCS_GDT M 45 M 45 3 6 11 3 3 3 5 5 7 7 7 7 8 9 12 13 15 16 16 17 17 18 18 LCS_GDT P 46 P 46 3 6 11 3 3 3 5 5 7 7 7 7 8 9 10 13 15 15 16 17 17 18 18 LCS_AVERAGE LCS_A: 30.67 ( 16.00 21.33 54.67 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 9 9 9 9 9 12 13 15 15 17 19 21 21 23 23 23 24 26 26 GDT PERCENT_AT 22.86 25.71 25.71 25.71 25.71 25.71 34.29 37.14 42.86 42.86 48.57 54.29 60.00 60.00 65.71 65.71 65.71 68.57 74.29 74.29 GDT RMS_LOCAL 0.27 0.52 0.52 0.52 0.52 0.52 2.59 2.72 3.09 3.09 3.75 4.71 4.96 4.96 5.38 5.38 5.38 5.62 6.03 6.03 GDT RMS_ALL_AT 16.81 16.53 16.53 16.53 16.53 16.53 12.03 11.70 11.56 11.56 11.28 8.86 8.88 8.88 8.96 8.96 8.96 8.74 8.68 8.68 # Checking swapping # possible swapping detected: D 19 D 19 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 17 V 17 8.481 0 0.608 1.424 12.135 10.595 6.054 LGA T 18 T 18 2.738 0 0.558 1.312 4.200 57.976 57.687 LGA D 19 D 19 2.869 0 0.060 1.163 7.792 62.857 41.548 LGA I 20 I 20 2.962 0 0.035 1.387 6.866 60.952 42.976 LGA K 21 K 21 2.174 0 0.083 1.064 7.216 72.976 52.275 LGA D 22 D 22 1.934 0 0.110 1.028 7.738 75.000 48.036 LGA L 23 L 23 3.250 0 0.026 1.361 9.057 55.476 35.060 LGA T 24 T 24 3.468 0 0.069 0.111 4.631 51.905 46.599 LGA K 25 K 25 1.611 0 0.143 0.771 6.957 79.405 56.085 LGA L 26 L 26 1.093 0 0.257 0.320 3.180 77.619 72.440 LGA G 27 G 27 3.238 0 0.315 0.315 3.238 59.286 59.286 LGA A 28 A 28 2.541 0 0.588 0.591 5.661 41.786 46.381 LGA I 29 I 29 7.659 0 0.568 1.602 12.510 16.786 8.393 LGA Y 30 Y 30 5.234 0 0.573 1.373 6.985 22.738 23.095 LGA D 31 D 31 5.231 0 0.583 0.796 5.908 27.738 25.179 LGA K 32 K 32 9.221 0 0.061 0.691 16.889 3.690 1.640 LGA T 33 T 33 11.184 0 0.050 0.404 16.226 0.714 0.408 LGA K 34 K 34 6.717 0 0.204 0.422 13.746 23.690 11.958 LGA K 35 K 35 2.619 0 0.288 0.749 12.478 57.500 30.688 LGA Y 36 Y 36 3.636 0 0.055 1.251 10.297 40.952 26.389 LGA W 37 W 37 9.248 0 0.408 1.366 17.814 3.095 0.884 LGA V 38 V 38 10.198 0 0.624 1.088 13.546 0.119 0.408 LGA Y 39 Y 39 14.932 0 0.087 1.390 22.415 0.000 0.000 LGA Q 40 Q 40 20.291 0 0.330 0.589 22.145 0.000 0.000 LGA G 41 G 41 22.957 0 0.364 0.364 22.957 0.000 0.000 LGA K 42 K 42 19.659 0 0.217 0.739 20.914 0.000 0.000 LGA P 43 P 43 19.560 0 0.206 0.294 19.709 0.000 0.000 LGA V 44 V 44 20.586 0 0.646 0.997 22.796 0.000 0.000 LGA M 45 M 45 21.531 0 0.048 0.884 23.173 0.000 0.000 LGA P 46 P 46 23.764 0 0.321 0.570 25.935 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 30 120 120 100.00 246 246 100.00 35 SUMMARY(RMSD_GDC): 8.157 8.132 8.714 25.796 19.813 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 30 35 4.0 13 2.72 38.571 33.842 0.461 LGA_LOCAL RMSD: 2.723 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.704 Number of assigned atoms: 30 Std_ASGN_ATOMS RMSD: 8.157 Standard rmsd on all 30 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.117671 * X + -0.618482 * Y + -0.776939 * Z + 8.980992 Y_new = -0.844790 * X + 0.473600 * Y + -0.249062 * Z + -3.188898 Z_new = 0.521999 * X + 0.627043 * Y + -0.578216 * Z + 19.073154 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.709196 -0.549193 2.315705 [DEG: -97.9297 -31.4664 132.6801 ] ZXZ: -1.260578 2.187337 0.694232 [DEG: -72.2258 125.3252 39.7766 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS331_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS331_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 30 35 4.0 13 2.72 33.842 8.16 REMARK ---------------------------------------------------------- MOLECULE T0548TS331_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 137 N VAL 17 -32.643 -15.676 30.142 1.00 99.99 N ATOM 138 CA VAL 17 -33.985 -15.114 29.927 1.00 99.99 C ATOM 139 C VAL 17 -34.800 -15.138 31.212 1.00 99.99 C ATOM 140 O VAL 17 -34.440 -15.983 32.030 1.00 99.99 O ATOM 141 CB VAL 17 -34.639 -15.778 28.719 1.00 99.99 C ATOM 142 CG1 VAL 17 -34.131 -15.443 27.320 1.00 99.99 C ATOM 143 CG2 VAL 17 -34.865 -17.286 28.794 1.00 99.99 C ATOM 144 N THR 18 -35.834 -14.315 31.403 1.00 99.99 N ATOM 145 CA THR 18 -36.833 -14.413 32.449 1.00 99.99 C ATOM 146 C THR 18 -38.223 -14.157 31.885 1.00 99.99 C ATOM 147 O THR 18 -38.392 -13.672 30.769 1.00 99.99 O ATOM 148 CB THR 18 -36.649 -13.454 33.621 1.00 99.99 C ATOM 149 OG1 THR 18 -36.765 -12.114 33.198 1.00 99.99 O ATOM 150 CG2 THR 18 -35.205 -13.517 34.113 1.00 99.99 C ATOM 151 N ASP 19 -39.290 -14.552 32.584 1.00 99.99 N ATOM 152 CA ASP 19 -40.675 -14.366 32.203 1.00 99.99 C ATOM 153 C ASP 19 -41.100 -12.919 32.001 1.00 99.99 C ATOM 154 O ASP 19 -41.487 -12.606 30.877 1.00 99.99 O ATOM 155 CB ASP 19 -41.650 -15.123 33.102 1.00 99.99 C ATOM 156 CG ASP 19 -41.883 -14.608 34.515 1.00 99.99 C ATOM 157 OD1 ASP 19 -43.054 -14.362 34.878 1.00 99.99 O ATOM 158 OD2 ASP 19 -40.863 -14.224 35.127 1.00 99.99 O ATOM 159 N ILE 20 -40.930 -12.060 33.009 1.00 99.99 N ATOM 160 CA ILE 20 -41.192 -10.641 32.881 1.00 99.99 C ATOM 161 C ILE 20 -40.494 -9.956 31.714 1.00 99.99 C ATOM 162 O ILE 20 -41.009 -9.112 30.985 1.00 99.99 O ATOM 163 CB ILE 20 -40.849 -10.037 34.239 1.00 99.99 C ATOM 164 CG1 ILE 20 -41.256 -8.570 34.343 1.00 99.99 C ATOM 165 CG2 ILE 20 -39.383 -10.184 34.639 1.00 99.99 C ATOM 166 CD1 ILE 20 -42.718 -8.276 34.021 1.00 99.99 C ATOM 167 N LYS 21 -39.250 -10.363 31.451 1.00 99.99 N ATOM 168 CA LYS 21 -38.475 -9.994 30.283 1.00 99.99 C ATOM 169 C LYS 21 -39.116 -10.371 28.955 1.00 99.99 C ATOM 170 O LYS 21 -39.375 -9.439 28.195 1.00 99.99 O ATOM 171 CB LYS 21 -37.015 -10.427 30.379 1.00 99.99 C ATOM 172 CG LYS 21 -36.226 -9.595 31.385 1.00 99.99 C ATOM 173 CD LYS 21 -34.784 -10.062 31.564 1.00 99.99 C ATOM 174 CE LYS 21 -34.208 -9.220 32.699 1.00 99.99 C ATOM 175 NZ LYS 21 -32.741 -9.144 32.628 1.00 99.99 N ATOM 176 N ASP 22 -39.574 -11.615 28.807 1.00 99.99 N ATOM 177 CA ASP 22 -40.292 -12.094 27.643 1.00 99.99 C ATOM 178 C ASP 22 -41.637 -11.387 27.552 1.00 99.99 C ATOM 179 O ASP 22 -41.966 -10.821 26.511 1.00 99.99 O ATOM 180 CB ASP 22 -40.433 -13.614 27.656 1.00 99.99 C ATOM 181 CG ASP 22 -41.493 -14.035 26.649 1.00 99.99 C ATOM 182 OD1 ASP 22 -41.376 -13.753 25.437 1.00 99.99 O ATOM 183 OD2 ASP 22 -42.416 -14.718 27.144 1.00 99.99 O ATOM 184 N LEU 23 -42.467 -11.519 28.588 1.00 99.99 N ATOM 185 CA LEU 23 -43.845 -11.071 28.615 1.00 99.99 C ATOM 186 C LEU 23 -44.052 -9.741 27.906 1.00 99.99 C ATOM 187 O LEU 23 -44.934 -9.689 27.052 1.00 99.99 O ATOM 188 CB LEU 23 -44.302 -11.117 30.071 1.00 99.99 C ATOM 189 CG LEU 23 -45.728 -10.643 30.337 1.00 99.99 C ATOM 190 CD1 LEU 23 -46.736 -11.594 29.697 1.00 99.99 C ATOM 191 CD2 LEU 23 -46.097 -10.360 31.791 1.00 99.99 C ATOM 192 N THR 24 -43.260 -8.758 28.343 1.00 99.99 N ATOM 193 CA THR 24 -43.184 -7.335 28.078 1.00 99.99 C ATOM 194 C THR 24 -42.721 -7.008 26.666 1.00 99.99 C ATOM 195 O THR 24 -43.037 -5.958 26.113 1.00 99.99 O ATOM 196 CB THR 24 -42.377 -6.576 29.128 1.00 99.99 C ATOM 197 OG1 THR 24 -41.122 -7.215 29.148 1.00 99.99 O ATOM 198 CG2 THR 24 -43.059 -6.797 30.474 1.00 99.99 C ATOM 199 N LYS 25 -41.859 -7.835 26.069 1.00 99.99 N ATOM 200 CA LYS 25 -41.198 -7.668 24.791 1.00 99.99 C ATOM 201 C LYS 25 -42.011 -8.408 23.738 1.00 99.99 C ATOM 202 O LYS 25 -42.315 -7.867 22.677 1.00 99.99 O ATOM 203 CB LYS 25 -39.724 -8.030 24.947 1.00 99.99 C ATOM 204 CG LYS 25 -38.812 -7.645 23.785 1.00 99.99 C ATOM 205 CD LYS 25 -38.786 -8.553 22.559 1.00 99.99 C ATOM 206 CE LYS 25 -37.810 -7.948 21.555 1.00 99.99 C ATOM 207 NZ LYS 25 -37.655 -8.666 20.279 1.00 99.99 N ATOM 208 N LEU 26 -42.296 -9.683 24.008 1.00 99.99 N ATOM 209 CA LEU 26 -42.924 -10.623 23.100 1.00 99.99 C ATOM 210 C LEU 26 -44.053 -11.395 23.767 1.00 99.99 C ATOM 211 O LEU 26 -45.215 -11.144 23.451 1.00 99.99 O ATOM 212 CB LEU 26 -41.817 -11.438 22.437 1.00 99.99 C ATOM 213 CG LEU 26 -42.328 -12.587 21.571 1.00 99.99 C ATOM 214 CD1 LEU 26 -43.263 -12.204 20.428 1.00 99.99 C ATOM 215 CD2 LEU 26 -41.160 -13.273 20.868 1.00 99.99 C ATOM 216 N GLY 27 -43.703 -12.331 24.651 1.00 99.99 N ATOM 217 CA GLY 27 -44.608 -12.978 25.580 1.00 99.99 C ATOM 218 C GLY 27 -44.948 -14.362 25.045 1.00 99.99 C ATOM 219 O GLY 27 -46.039 -14.513 24.502 1.00 99.99 O ATOM 220 N ALA 28 -43.995 -15.296 25.097 1.00 99.99 N ATOM 221 CA ALA 28 -44.087 -16.708 24.785 1.00 99.99 C ATOM 222 C ALA 28 -43.258 -17.553 25.740 1.00 99.99 C ATOM 223 O ALA 28 -43.734 -18.565 26.249 1.00 99.99 O ATOM 224 CB ALA 28 -43.712 -16.880 23.316 1.00 99.99 C ATOM 225 N ILE 29 -42.017 -17.219 26.101 1.00 99.99 N ATOM 226 CA ILE 29 -41.298 -17.807 27.213 1.00 99.99 C ATOM 227 C ILE 29 -42.155 -17.814 28.472 1.00 99.99 C ATOM 228 O ILE 29 -42.292 -18.911 29.008 1.00 99.99 O ATOM 229 CB ILE 29 -39.933 -17.155 27.409 1.00 99.99 C ATOM 230 CG1 ILE 29 -39.064 -16.832 26.196 1.00 99.99 C ATOM 231 CG2 ILE 29 -39.124 -17.970 28.413 1.00 99.99 C ATOM 232 CD1 ILE 29 -38.738 -17.972 25.235 1.00 99.99 C ATOM 233 N TYR 30 -42.797 -16.703 28.844 1.00 99.99 N ATOM 234 CA TYR 30 -43.761 -16.558 29.915 1.00 99.99 C ATOM 235 C TYR 30 -44.797 -17.672 29.877 1.00 99.99 C ATOM 236 O TYR 30 -45.157 -18.369 30.823 1.00 99.99 O ATOM 237 CB TYR 30 -44.286 -15.131 30.029 1.00 99.99 C ATOM 238 CG TYR 30 -45.257 -14.983 31.177 1.00 99.99 C ATOM 239 CD1 TYR 30 -46.586 -15.404 31.054 1.00 99.99 C ATOM 240 CD2 TYR 30 -44.971 -14.162 32.274 1.00 99.99 C ATOM 241 CE1 TYR 30 -47.570 -15.188 32.026 1.00 99.99 C ATOM 242 CE2 TYR 30 -45.914 -13.931 33.282 1.00 99.99 C ATOM 243 CZ TYR 30 -47.200 -14.502 33.198 1.00 99.99 C ATOM 244 OH TYR 30 -48.026 -14.483 34.284 1.00 99.99 H ATOM 245 N ASP 31 -45.346 -17.884 28.677 1.00 99.99 N ATOM 246 CA ASP 31 -46.433 -18.778 28.332 1.00 99.99 C ATOM 247 C ASP 31 -46.192 -20.268 28.531 1.00 99.99 C ATOM 248 O ASP 31 -46.993 -21.047 29.040 1.00 99.99 O ATOM 249 CB ASP 31 -46.964 -18.511 26.927 1.00 99.99 C ATOM 250 CG ASP 31 -48.124 -19.424 26.558 1.00 99.99 C ATOM 251 OD1 ASP 31 -49.278 -19.016 26.817 1.00 99.99 O ATOM 252 OD2 ASP 31 -47.973 -20.560 26.060 1.00 99.99 O ATOM 253 N LYS 32 -45.070 -20.657 27.918 1.00 99.99 N ATOM 254 CA LYS 32 -44.488 -21.978 28.039 1.00 99.99 C ATOM 255 C LYS 32 -44.054 -22.311 29.460 1.00 99.99 C ATOM 256 O LYS 32 -44.321 -23.424 29.910 1.00 99.99 O ATOM 257 CB LYS 32 -43.381 -22.083 26.994 1.00 99.99 C ATOM 258 CG LYS 32 -43.920 -21.835 25.587 1.00 99.99 C ATOM 259 CD LYS 32 -42.830 -22.219 24.590 1.00 99.99 C ATOM 260 CE LYS 32 -43.230 -21.954 23.141 1.00 99.99 C ATOM 261 NZ LYS 32 -42.126 -22.260 22.219 1.00 99.99 N ATOM 262 N THR 33 -43.365 -21.413 30.167 1.00 99.99 N ATOM 263 CA THR 33 -43.038 -21.537 31.573 1.00 99.99 C ATOM 264 C THR 33 -44.302 -21.620 32.418 1.00 99.99 C ATOM 265 O THR 33 -44.341 -22.330 33.421 1.00 99.99 O ATOM 266 CB THR 33 -42.045 -20.439 31.941 1.00 99.99 C ATOM 267 OG1 THR 33 -42.563 -19.179 31.578 1.00 99.99 O ATOM 268 CG2 THR 33 -40.690 -20.652 31.275 1.00 99.99 C ATOM 269 N LYS 34 -45.391 -20.920 32.096 1.00 99.99 N ATOM 270 CA LYS 34 -46.664 -21.070 32.774 1.00 99.99 C ATOM 271 C LYS 34 -47.178 -22.474 32.494 1.00 99.99 C ATOM 272 O LYS 34 -47.563 -23.159 33.439 1.00 99.99 O ATOM 273 CB LYS 34 -47.705 -20.017 32.408 1.00 99.99 C ATOM 274 CG LYS 34 -48.871 -19.893 33.386 1.00 99.99 C ATOM 275 CD LYS 34 -49.786 -18.754 32.944 1.00 99.99 C ATOM 276 CE LYS 34 -50.959 -18.590 33.907 1.00 99.99 C ATOM 277 NZ LYS 34 -51.787 -17.413 33.603 1.00 99.99 N ATOM 278 N LYS 35 -47.272 -22.868 31.221 1.00 99.99 N ATOM 279 CA LYS 35 -47.702 -24.165 30.740 1.00 99.99 C ATOM 280 C LYS 35 -47.063 -25.385 31.386 1.00 99.99 C ATOM 281 O LYS 35 -47.745 -26.153 32.061 1.00 99.99 O ATOM 282 CB LYS 35 -47.633 -24.135 29.216 1.00 99.99 C ATOM 283 CG LYS 35 -47.885 -25.472 28.527 1.00 99.99 C ATOM 284 CD LYS 35 -48.069 -25.312 27.020 1.00 99.99 C ATOM 285 CE LYS 35 -48.212 -26.604 26.221 1.00 99.99 C ATOM 286 NZ LYS 35 -48.384 -26.265 24.800 1.00 99.99 N ATOM 287 N TYR 36 -45.748 -25.536 31.206 1.00 99.99 N ATOM 288 CA TYR 36 -44.931 -26.554 31.832 1.00 99.99 C ATOM 289 C TYR 36 -43.539 -26.140 32.288 1.00 99.99 C ATOM 290 O TYR 36 -43.147 -25.035 31.921 1.00 99.99 O ATOM 291 CB TYR 36 -44.821 -27.659 30.784 1.00 99.99 C ATOM 292 CG TYR 36 -43.932 -28.820 31.162 1.00 99.99 C ATOM 293 CD1 TYR 36 -42.652 -28.928 30.606 1.00 99.99 C ATOM 294 CD2 TYR 36 -44.301 -29.706 32.180 1.00 99.99 C ATOM 295 CE1 TYR 36 -41.700 -29.793 31.161 1.00 99.99 C ATOM 296 CE2 TYR 36 -43.417 -30.678 32.665 1.00 99.99 C ATOM 297 CZ TYR 36 -42.113 -30.726 32.133 1.00 99.99 C ATOM 298 OH TYR 36 -41.249 -31.641 32.658 1.00 99.99 H ATOM 299 N TRP 37 -42.868 -26.929 33.131 1.00 99.99 N ATOM 300 CA TRP 37 -41.492 -26.710 33.525 1.00 99.99 C ATOM 301 C TRP 37 -40.493 -26.985 32.410 1.00 99.99 C ATOM 302 O TRP 37 -39.624 -27.854 32.428 1.00 99.99 O ATOM 303 CB TRP 37 -41.252 -27.559 34.769 1.00 99.99 C ATOM 304 CG TRP 37 -40.067 -27.319 35.649 1.00 99.99 C ATOM 305 CD1 TRP 37 -38.835 -26.912 35.272 1.00 99.99 C ATOM 306 CD2 TRP 37 -39.979 -27.552 37.087 1.00 99.99 C ATOM 307 NE1 TRP 37 -38.042 -26.631 36.368 1.00 99.99 N ATOM 308 CE2 TRP 37 -38.738 -27.003 37.500 1.00 99.99 C ATOM 309 CE3 TRP 37 -40.885 -28.074 38.024 1.00 99.99 C ATOM 310 CZ2 TRP 37 -38.402 -27.105 38.855 1.00 99.99 C ATOM 311 CZ3 TRP 37 -40.570 -28.097 39.388 1.00 99.99 C ATOM 312 CH2 TRP 37 -39.266 -27.741 39.756 1.00 99.99 H ATOM 313 N VAL 38 -40.632 -26.241 31.311 1.00 99.99 N ATOM 314 CA VAL 38 -39.647 -26.017 30.271 1.00 99.99 C ATOM 315 C VAL 38 -38.176 -25.876 30.635 1.00 99.99 C ATOM 316 O VAL 38 -37.289 -26.422 29.983 1.00 99.99 O ATOM 317 CB VAL 38 -40.130 -25.011 29.230 1.00 99.99 C ATOM 318 CG1 VAL 38 -41.454 -25.449 28.612 1.00 99.99 C ATOM 319 CG2 VAL 38 -40.235 -23.610 29.825 1.00 99.99 C ATOM 320 N TYR 39 -37.861 -25.328 31.811 1.00 99.99 N ATOM 321 CA TYR 39 -36.541 -25.086 32.356 1.00 99.99 C ATOM 322 C TYR 39 -35.750 -26.308 32.802 1.00 99.99 C ATOM 323 O TYR 39 -36.233 -27.047 33.657 1.00 99.99 O ATOM 324 CB TYR 39 -36.704 -24.059 33.474 1.00 99.99 C ATOM 325 CG TYR 39 -35.407 -23.585 34.083 1.00 99.99 C ATOM 326 CD1 TYR 39 -35.093 -24.110 35.343 1.00 99.99 C ATOM 327 CD2 TYR 39 -34.560 -22.611 33.542 1.00 99.99 C ATOM 328 CE1 TYR 39 -34.014 -23.627 36.092 1.00 99.99 C ATOM 329 CE2 TYR 39 -33.404 -22.206 34.221 1.00 99.99 C ATOM 330 CZ TYR 39 -33.185 -22.627 35.547 1.00 99.99 C ATOM 331 OH TYR 39 -32.129 -22.245 36.321 1.00 99.99 H ATOM 332 N GLN 40 -34.486 -26.346 32.373 1.00 99.99 N ATOM 333 CA GLN 40 -33.482 -27.386 32.468 1.00 99.99 C ATOM 334 C GLN 40 -33.106 -27.702 33.909 1.00 99.99 C ATOM 335 O GLN 40 -32.678 -28.811 34.220 1.00 99.99 O ATOM 336 CB GLN 40 -32.225 -26.976 31.703 1.00 99.99 C ATOM 337 CG GLN 40 -31.299 -25.843 32.134 1.00 99.99 C ATOM 338 CD GLN 40 -30.105 -25.542 31.239 1.00 99.99 C ATOM 339 OE1 GLN 40 -28.974 -25.928 31.527 1.00 99.99 O ATOM 340 NE2 GLN 40 -30.335 -25.016 30.034 1.00 99.99 N ATOM 341 N GLY 41 -33.176 -26.707 34.797 1.00 99.99 N ATOM 342 CA GLY 41 -32.927 -26.843 36.218 1.00 99.99 C ATOM 343 C GLY 41 -34.106 -27.547 36.875 1.00 99.99 C ATOM 344 O GLY 41 -34.962 -26.893 37.466 1.00 99.99 O ATOM 345 N LYS 42 -34.081 -28.878 36.768 1.00 99.99 N ATOM 346 CA LYS 42 -35.119 -29.844 37.067 1.00 99.99 C ATOM 347 C LYS 42 -34.789 -30.754 38.242 1.00 99.99 C ATOM 348 O LYS 42 -33.985 -31.675 38.120 1.00 99.99 O ATOM 349 CB LYS 42 -35.350 -30.672 35.806 1.00 99.99 C ATOM 350 CG LYS 42 -36.316 -30.020 34.820 1.00 99.99 C ATOM 351 CD LYS 42 -36.742 -31.069 33.799 1.00 99.99 C ATOM 352 CE LYS 42 -37.867 -30.612 32.875 1.00 99.99 C ATOM 353 NZ LYS 42 -37.529 -29.447 32.044 1.00 99.99 N ATOM 354 N PRO 43 -35.361 -30.548 39.430 1.00 99.99 N ATOM 355 CA PRO 43 -35.132 -31.393 40.584 1.00 99.99 C ATOM 356 C PRO 43 -35.760 -32.777 40.490 1.00 99.99 C ATOM 357 O PRO 43 -36.965 -32.932 40.679 1.00 99.99 O ATOM 358 CB PRO 43 -35.634 -30.618 41.799 1.00 99.99 C ATOM 359 CG PRO 43 -36.508 -29.500 41.239 1.00 99.99 C ATOM 360 CD PRO 43 -36.170 -29.390 39.754 1.00 99.99 C ATOM 361 N VAL 44 -34.999 -33.845 40.245 1.00 99.99 N ATOM 362 CA VAL 44 -35.510 -35.195 40.110 1.00 99.99 C ATOM 363 C VAL 44 -35.023 -36.132 41.205 1.00 99.99 C ATOM 364 O VAL 44 -35.593 -37.204 41.391 1.00 99.99 O ATOM 365 CB VAL 44 -34.994 -35.747 38.784 1.00 99.99 C ATOM 366 CG1 VAL 44 -35.526 -34.967 37.585 1.00 99.99 C ATOM 367 CG2 VAL 44 -33.471 -35.703 38.697 1.00 99.99 C ATOM 368 N MET 45 -33.939 -35.751 41.885 1.00 99.99 N ATOM 369 CA MET 45 -33.250 -36.359 43.006 1.00 99.99 C ATOM 370 C MET 45 -34.051 -36.399 44.301 1.00 99.99 C ATOM 371 O MET 45 -34.499 -35.320 44.682 1.00 99.99 O ATOM 372 CB MET 45 -32.006 -35.538 43.330 1.00 99.99 C ATOM 373 CG MET 45 -31.171 -35.204 42.096 1.00 99.99 C ATOM 374 SD MET 45 -31.663 -33.671 41.272 1.00 99.99 S ATOM 375 CE MET 45 -30.318 -33.529 40.068 1.00 99.99 C ATOM 376 N PRO 46 -34.234 -37.513 45.013 1.00 99.99 N ATOM 377 CA PRO 46 -34.998 -37.492 46.243 1.00 99.99 C ATOM 378 C PRO 46 -34.276 -36.917 47.452 1.00 99.99 C ATOM 379 O PRO 46 -33.591 -37.623 48.188 1.00 99.99 O ATOM 380 CB PRO 46 -35.388 -38.938 46.538 1.00 99.99 C ATOM 381 CG PRO 46 -34.181 -39.690 45.986 1.00 99.99 C ATOM 382 CD PRO 46 -33.730 -38.853 44.792 1.00 99.99 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 246 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 75.12 50.0 58 85.3 68 ARMSMC SECONDARY STRUCTURE . . 77.70 51.5 33 97.1 34 ARMSMC SURFACE . . . . . . . . 69.08 54.2 48 85.7 56 ARMSMC BURIED . . . . . . . . 99.14 30.0 10 83.3 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 93.03 18.5 27 84.4 32 ARMSSC1 RELIABLE SIDE CHAINS . 87.25 20.8 24 82.8 29 ARMSSC1 SECONDARY STRUCTURE . . 96.81 29.4 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 88.53 21.7 23 85.2 27 ARMSSC1 BURIED . . . . . . . . 115.53 0.0 4 80.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.77 33.3 21 84.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 71.84 31.6 19 90.5 21 ARMSSC2 SECONDARY STRUCTURE . . 77.73 38.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 67.53 36.8 19 86.4 22 ARMSSC2 BURIED . . . . . . . . 103.75 0.0 2 66.7 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.99 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 65.09 71.4 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 82.13 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 67.99 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.27 66.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 77.27 66.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 106.71 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 77.27 66.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.16 (Number of atoms: 30) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.16 30 85.7 35 CRMSCA CRN = ALL/NP . . . . . 0.2719 CRMSCA SECONDARY STRUCTURE . . 6.35 17 100.0 17 CRMSCA SURFACE . . . . . . . . 8.26 25 86.2 29 CRMSCA BURIED . . . . . . . . 7.65 5 83.3 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.26 148 85.5 173 CRMSMC SECONDARY STRUCTURE . . 6.52 85 100.0 85 CRMSMC SURFACE . . . . . . . . 8.34 123 86.0 143 CRMSMC BURIED . . . . . . . . 7.87 25 83.3 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.28 126 80.8 156 CRMSSC RELIABLE SIDE CHAINS . 9.04 114 83.8 136 CRMSSC SECONDARY STRUCTURE . . 8.25 84 100.0 84 CRMSSC SURFACE . . . . . . . . 8.97 105 82.7 127 CRMSSC BURIED . . . . . . . . 10.71 21 72.4 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.74 246 83.1 296 CRMSALL SECONDARY STRUCTURE . . 7.47 152 100.0 152 CRMSALL SURFACE . . . . . . . . 8.62 205 84.4 243 CRMSALL BURIED . . . . . . . . 9.34 41 77.4 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.721 0.867 0.877 30 85.7 35 ERRCA SECONDARY STRUCTURE . . 94.270 0.893 0.899 17 100.0 17 ERRCA SURFACE . . . . . . . . 92.596 0.864 0.874 25 86.2 29 ERRCA BURIED . . . . . . . . 93.349 0.878 0.887 5 83.3 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.665 0.866 0.876 148 85.5 173 ERRMC SECONDARY STRUCTURE . . 94.124 0.891 0.897 85 100.0 85 ERRMC SURFACE . . . . . . . . 92.556 0.864 0.874 123 86.0 143 ERRMC BURIED . . . . . . . . 93.198 0.875 0.885 25 83.3 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.593 0.847 0.860 126 80.8 156 ERRSC RELIABLE SIDE CHAINS . 91.775 0.850 0.862 114 83.8 136 ERRSC SECONDARY STRUCTURE . . 92.459 0.862 0.872 84 100.0 84 ERRSC SURFACE . . . . . . . . 91.903 0.853 0.864 105 82.7 127 ERRSC BURIED . . . . . . . . 90.044 0.821 0.838 21 72.4 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.172 0.857 0.869 246 83.1 296 ERRALL SECONDARY STRUCTURE . . 93.263 0.876 0.884 152 100.0 152 ERRALL SURFACE . . . . . . . . 92.270 0.859 0.870 205 84.4 243 ERRALL BURIED . . . . . . . . 91.683 0.849 0.862 41 77.4 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 2 9 24 30 35 DISTCA CA (P) 0.00 2.86 5.71 25.71 68.57 35 DISTCA CA (RMS) 0.00 1.29 1.94 3.77 6.17 DISTCA ALL (N) 1 3 15 68 187 246 296 DISTALL ALL (P) 0.34 1.01 5.07 22.97 63.18 296 DISTALL ALL (RMS) 0.90 1.22 2.34 3.84 6.40 DISTALL END of the results output