####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 55 ( 220), selected 55 , name T0548TS328_1-D2 # Molecule2: number of CA atoms 60 ( 491), selected 55 , name T0548-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS328_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 34 56 - 89 4.89 13.22 LCS_AVERAGE: 45.91 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 60 - 74 1.65 14.32 LONGEST_CONTINUOUS_SEGMENT: 15 61 - 75 1.99 14.41 LCS_AVERAGE: 17.45 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 61 - 73 0.85 14.98 LCS_AVERAGE: 13.06 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 55 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 47 D 47 5 7 13 3 5 6 7 7 7 7 8 9 11 12 14 15 15 18 23 24 29 30 36 LCS_GDT Q 48 Q 48 5 7 13 3 5 5 7 7 7 7 8 9 11 13 18 22 27 30 33 34 36 36 37 LCS_GDT F 49 F 49 5 7 13 3 5 6 7 7 7 7 8 9 11 13 19 27 28 30 33 34 36 36 37 LCS_GDT T 50 T 50 5 7 13 3 5 6 7 7 7 7 8 9 11 12 14 15 17 22 26 33 36 36 37 LCS_GDT F 51 F 51 5 7 13 3 5 6 7 7 7 7 8 9 11 12 14 15 18 22 30 34 36 36 37 LCS_GDT E 52 E 52 4 7 13 3 3 6 7 7 7 7 8 9 11 15 18 27 28 31 33 34 36 36 37 LCS_GDT L 53 L 53 4 7 13 0 3 6 7 7 7 7 8 9 11 14 18 27 28 31 33 34 36 36 37 LCS_GDT L 54 L 54 4 5 13 3 4 4 4 5 5 6 7 8 11 11 11 13 18 22 24 27 29 36 37 LCS_GDT D 55 D 55 4 5 33 3 4 4 4 5 5 6 8 8 11 11 11 14 16 20 24 24 26 30 32 LCS_GDT F 56 F 56 4 5 34 3 4 4 4 5 8 10 13 14 16 19 21 25 29 31 33 34 36 36 37 LCS_GDT L 57 L 57 4 5 34 3 4 4 4 7 10 13 14 16 18 22 26 30 31 31 33 34 36 36 37 LCS_GDT H 58 H 58 3 5 34 1 3 3 3 5 10 13 16 18 19 23 26 30 31 31 33 34 36 36 37 LCS_GDT Q 59 Q 59 3 6 34 1 3 5 5 9 14 17 22 23 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT L 60 L 60 3 15 34 3 4 11 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT T 61 T 61 13 15 34 3 3 10 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT H 62 H 62 13 15 34 4 11 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT L 63 L 63 13 15 34 10 11 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT S 64 S 64 13 15 34 10 11 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT F 65 F 65 13 15 34 10 11 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT S 66 S 66 13 15 34 10 11 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT K 67 K 67 13 15 34 10 11 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT M 68 M 68 13 15 34 10 11 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT K 69 K 69 13 15 34 10 11 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT A 70 A 70 13 15 34 10 11 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT L 71 L 71 13 15 34 10 11 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT L 72 L 72 13 15 34 3 4 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT E 73 E 73 13 15 34 10 11 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT R 74 R 74 3 15 34 3 3 4 8 14 17 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT S 75 S 75 3 15 34 3 3 4 6 10 14 17 22 23 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT H 76 H 76 3 8 34 3 3 5 6 16 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT S 77 S 77 4 8 34 3 3 4 7 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT P 78 P 78 5 8 34 3 5 5 8 13 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT Y 79 Y 79 5 8 34 3 5 5 8 15 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT Y 80 Y 80 5 8 34 3 5 5 8 10 16 19 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT M 81 M 81 5 8 34 3 5 5 7 13 17 19 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT L 82 L 82 5 8 34 3 5 5 8 13 16 19 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT N 83 N 83 4 13 34 3 4 4 6 9 16 19 22 24 26 27 29 30 31 31 33 34 36 36 37 LCS_GDT R 84 R 84 12 13 34 9 12 12 12 12 12 12 14 16 23 27 29 30 31 31 33 34 36 36 37 LCS_GDT D 85 D 85 12 13 34 9 12 12 12 12 12 12 14 16 18 24 29 30 31 31 33 34 36 36 37 LCS_GDT R 86 R 86 12 13 34 9 12 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 35 36 37 LCS_GDT T 87 T 87 12 13 34 9 12 12 12 17 20 20 22 23 25 27 29 29 31 31 33 33 35 36 37 LCS_GDT L 88 L 88 12 13 34 9 12 12 12 12 12 12 14 18 23 24 26 26 29 31 33 33 35 36 37 LCS_GDT K 89 K 89 12 13 34 9 12 12 12 12 12 12 14 15 20 24 26 26 29 30 31 32 35 35 37 LCS_GDT N 90 N 90 12 13 33 9 12 12 12 12 12 12 14 15 15 15 22 24 27 28 29 31 32 34 36 LCS_GDT I 91 I 91 12 13 18 9 12 12 12 12 12 12 14 15 15 15 15 16 22 25 26 27 29 30 32 LCS_GDT T 92 T 92 12 13 18 9 12 12 12 12 12 12 14 15 15 15 15 16 17 19 20 22 29 29 30 LCS_GDT E 93 E 93 12 13 18 6 12 12 12 12 12 12 14 15 15 15 15 16 17 19 20 22 29 29 31 LCS_GDT T 94 T 94 12 13 18 6 12 12 12 12 12 12 14 15 15 15 15 16 17 17 19 22 24 26 26 LCS_GDT C 95 C 95 12 13 18 6 12 12 12 12 12 12 14 15 15 15 15 16 17 17 19 20 24 26 26 LCS_GDT K 96 K 96 3 13 18 3 3 4 5 5 8 11 13 13 14 15 15 16 17 17 19 22 24 26 26 LCS_GDT A 97 A 97 3 6 18 1 3 4 5 5 8 8 11 13 14 15 15 16 17 17 19 21 24 26 26 LCS_GDT C 98 C 98 3 3 18 3 3 3 3 5 6 7 8 12 14 15 15 16 17 17 19 22 24 26 26 LCS_GDT A 99 A 99 3 3 17 3 3 3 3 3 5 6 7 9 11 13 14 16 17 17 19 22 24 26 26 LCS_GDT Q 100 Q 100 3 3 14 3 3 3 3 3 4 4 5 9 11 13 14 16 17 17 19 22 24 26 26 LCS_GDT V 101 V 101 3 3 14 3 3 3 3 3 4 4 5 8 11 13 14 16 17 17 19 22 24 26 26 LCS_AVERAGE LCS_A: 25.47 ( 13.06 17.45 45.91 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 12 12 13 17 20 20 22 24 26 27 29 30 31 31 33 34 36 36 37 GDT PERCENT_AT 16.67 20.00 20.00 21.67 28.33 33.33 33.33 36.67 40.00 43.33 45.00 48.33 50.00 51.67 51.67 55.00 56.67 60.00 60.00 61.67 GDT RMS_LOCAL 0.26 0.60 0.60 0.85 1.71 1.96 1.96 2.33 2.95 3.22 3.29 3.55 3.97 4.05 4.05 4.85 5.06 5.78 5.38 5.84 GDT RMS_ALL_AT 15.76 18.24 18.24 14.98 13.79 13.80 13.80 13.68 13.66 13.54 13.65 13.56 13.52 13.48 13.48 13.66 13.78 14.09 13.69 13.98 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 47 D 47 23.391 4 0.194 0.194 23.391 0.000 0.000 LGA Q 48 Q 48 17.066 5 0.075 0.075 19.320 0.000 0.000 LGA F 49 F 49 14.528 7 0.051 0.051 15.841 0.000 0.000 LGA T 50 T 50 18.139 3 0.021 0.021 18.246 0.000 0.000 LGA F 51 F 51 19.399 7 0.078 0.078 19.399 0.000 0.000 LGA E 52 E 52 15.867 5 0.591 0.591 16.820 0.000 0.000 LGA L 53 L 53 13.728 4 0.556 0.556 15.414 0.000 0.000 LGA L 54 L 54 17.210 4 0.572 0.572 17.414 0.000 0.000 LGA D 55 D 55 19.144 4 0.143 0.143 19.144 0.000 0.000 LGA F 56 F 56 13.424 7 0.290 0.290 15.202 0.000 0.000 LGA L 57 L 57 9.472 4 0.600 0.600 10.924 0.357 0.179 LGA H 58 H 58 10.486 6 0.609 0.609 10.486 1.548 0.619 LGA Q 59 Q 59 6.783 5 0.621 0.621 8.305 16.429 7.302 LGA L 60 L 60 1.674 4 0.665 0.665 3.144 67.619 33.810 LGA T 61 T 61 2.881 3 0.663 0.663 2.881 65.119 37.211 LGA H 62 H 62 1.717 6 0.512 0.512 1.909 77.143 30.857 LGA L 63 L 63 1.411 4 0.032 0.032 1.872 81.548 40.774 LGA S 64 S 64 0.550 2 0.056 0.056 0.830 92.857 61.905 LGA F 65 F 65 1.547 7 0.054 0.054 1.547 81.548 29.654 LGA S 66 S 66 1.822 2 0.060 0.060 1.822 77.143 51.429 LGA K 67 K 67 1.381 5 0.040 0.040 1.403 83.690 37.196 LGA M 68 M 68 0.934 4 0.052 0.052 1.475 90.595 45.298 LGA K 69 K 69 0.528 5 0.052 0.052 0.528 97.619 43.386 LGA A 70 A 70 1.605 1 0.028 0.028 2.121 75.238 60.190 LGA L 71 L 71 2.466 4 0.165 0.165 2.466 66.786 33.393 LGA L 72 L 72 2.134 4 0.410 0.410 2.746 62.857 31.429 LGA E 73 E 73 1.559 5 0.629 0.629 1.706 77.143 34.286 LGA R 74 R 74 3.936 7 0.520 0.520 4.480 43.452 15.801 LGA S 75 S 75 4.571 2 0.025 0.025 4.571 47.262 31.508 LGA H 76 H 76 2.947 6 0.271 0.271 3.909 57.619 23.048 LGA S 77 S 77 2.336 2 0.048 0.048 3.177 63.095 42.063 LGA P 78 P 78 2.927 3 0.381 0.381 3.140 53.571 30.612 LGA Y 79 Y 79 3.268 8 0.037 0.037 5.097 39.405 13.135 LGA Y 80 Y 80 6.664 8 0.073 0.073 6.664 20.714 6.905 LGA M 81 M 81 6.509 4 0.077 0.077 8.996 9.167 4.583 LGA L 82 L 82 8.199 4 0.159 0.159 8.199 9.762 4.881 LGA N 83 N 83 8.951 4 0.085 0.085 9.003 4.048 2.024 LGA R 84 R 84 7.543 7 0.533 0.533 7.802 15.714 5.714 LGA D 85 D 85 7.779 4 0.036 0.036 7.915 16.667 8.333 LGA R 86 R 86 1.546 7 0.022 0.022 3.939 64.167 23.333 LGA T 87 T 87 2.520 3 0.167 0.167 6.098 52.024 29.728 LGA L 88 L 88 6.974 4 0.059 0.059 10.785 13.333 6.667 LGA K 89 K 89 9.235 5 0.116 0.116 12.387 2.143 0.952 LGA N 90 N 90 10.763 4 0.055 0.055 14.880 0.714 0.357 LGA I 91 I 91 13.609 4 0.068 0.068 18.024 0.000 0.000 LGA T 92 T 92 17.673 3 0.040 0.040 21.370 0.000 0.000 LGA E 93 E 93 18.843 5 0.111 0.111 22.746 0.000 0.000 LGA T 94 T 94 21.921 3 0.056 0.056 25.335 0.000 0.000 LGA C 95 C 95 24.936 2 0.437 0.437 26.916 0.000 0.000 LGA K 96 K 96 26.616 5 0.642 0.642 27.164 0.000 0.000 LGA A 97 A 97 27.599 1 0.591 0.591 27.599 0.000 0.000 LGA C 98 C 98 23.795 2 0.615 0.615 27.225 0.000 0.000 LGA A 99 A 99 26.615 1 0.597 0.597 27.066 0.000 0.000 LGA Q 100 Q 100 27.951 5 0.578 0.578 31.310 0.000 0.000 LGA V 101 V 101 28.511 3 0.307 0.307 29.994 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 55 220 220 100.00 457 220 48.14 60 SUMMARY(RMSD_GDC): 12.028 12.003 12.003 27.135 13.809 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 55 60 4.0 22 2.33 33.333 30.526 0.906 LGA_LOCAL RMSD: 2.328 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.683 Number of assigned atoms: 55 Std_ASGN_ATOMS RMSD: 12.028 Standard rmsd on all 55 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.230351 * X + 0.972739 * Y + 0.026801 * Z + -16.036674 Y_new = 0.881965 * X + 0.197058 * Y + 0.428143 * Z + -46.650139 Z_new = 0.411190 * X + 0.122260 * Y + -0.903314 * Z + -33.114712 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.826268 -0.423759 3.007063 [DEG: 104.6375 -24.2796 172.2921 ] ZXZ: 3.079076 2.698228 1.281788 [DEG: 176.4181 154.5971 73.4410 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS328_1-D2 REMARK 2: T0548-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS328_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 55 60 4.0 22 2.33 30.526 12.03 REMARK ---------------------------------------------------------- MOLECULE T0548TS328_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 1v4v_B ATOM 185 N ASP 47 -14.560 -30.418 33.159 1.00 3.00 N ATOM 186 CA ASP 47 -14.386 -31.206 34.374 1.00 3.00 C ATOM 187 C ASP 47 -15.659 -31.300 35.214 1.00 3.00 C ATOM 188 O ASP 47 -15.764 -32.154 36.094 1.00 3.00 O ATOM 189 N GLN 48 -16.626 -30.431 34.936 1.00 3.00 N ATOM 190 CA GLN 48 -17.875 -30.419 35.690 1.00 3.00 C ATOM 191 C GLN 48 -19.059 -31.051 34.962 1.00 3.00 C ATOM 192 O GLN 48 -19.965 -31.588 35.598 1.00 3.00 O ATOM 193 N PHE 49 -19.055 -30.989 33.634 1.00 3.00 N ATOM 194 CA PHE 49 -20.158 -31.543 32.857 1.00 3.00 C ATOM 195 C PHE 49 -19.892 -32.916 32.241 1.00 3.00 C ATOM 196 O PHE 49 -20.734 -33.807 32.327 1.00 3.00 O ATOM 197 N THR 50 -18.729 -33.087 31.623 1.00 3.00 N ATOM 198 CA THR 50 -18.389 -34.356 30.989 1.00 3.00 C ATOM 199 C THR 50 -18.494 -35.566 31.912 1.00 3.00 C ATOM 200 O THR 50 -19.082 -36.582 31.544 1.00 3.00 O ATOM 201 N PHE 51 -17.924 -35.478 33.123 1.00 3.00 N ATOM 202 CA PHE 51 -17.998 -36.610 34.051 1.00 3.00 C ATOM 203 C PHE 51 -18.910 -37.786 33.724 1.00 3.00 C ATOM 204 O PHE 51 -18.434 -38.884 33.498 1.00 3.00 O ATOM 205 N GLU 52 -20.215 -37.560 33.715 1.00 3.00 N ATOM 206 CA GLU 52 -21.141 -38.647 33.430 1.00 3.00 C ATOM 207 C GLU 52 -22.173 -38.228 32.385 1.00 3.00 C ATOM 208 O GLU 52 -22.779 -37.166 32.487 1.00 3.00 O ATOM 209 N LEU 53 -22.352 -39.081 31.382 1.00 3.00 N ATOM 210 CA LEU 53 -23.294 -38.814 30.299 1.00 3.00 C ATOM 211 C LEU 53 -24.319 -39.928 30.212 1.00 3.00 C ATOM 212 O LEU 53 -24.060 -41.056 30.602 1.00 3.00 O ATOM 213 N LEU 54 -25.489 -39.593 29.670 1.00 3.00 N ATOM 214 CA LEU 54 -26.532 -40.582 29.501 1.00 3.00 C ATOM 215 C LEU 54 -26.335 -41.223 28.135 1.00 3.00 C ATOM 216 O LEU 54 -25.298 -41.026 27.503 1.00 3.00 O ATOM 217 N ASP 55 -27.310 -41.996 27.678 1.00 3.00 N ATOM 218 CA ASP 55 -27.221 -42.645 26.366 1.00 3.00 C ATOM 219 C ASP 55 -27.648 -41.712 25.234 1.00 3.00 C ATOM 220 O ASP 55 -27.300 -41.921 24.077 1.00 3.00 O ATOM 221 N PHE 56 -28.408 -40.667 25.576 1.00 3.00 N ATOM 222 CA PHE 56 -28.868 -39.725 24.573 1.00 3.00 C ATOM 223 C PHE 56 -28.272 -38.337 24.362 1.00 3.00 C ATOM 224 O PHE 56 -28.833 -37.516 23.635 1.00 3.00 O ATOM 225 N LEU 57 -27.138 -38.082 25.004 1.00 3.00 N ATOM 226 CA LEU 57 -26.467 -36.795 24.898 1.00 3.00 C ATOM 227 C LEU 57 -25.323 -36.818 23.893 1.00 3.00 C ATOM 228 O LEU 57 -24.669 -37.843 23.699 1.00 3.00 O ATOM 229 N HIS 58 -25.090 -35.673 23.260 1.00 3.00 N ATOM 230 CA HIS 58 -24.015 -35.526 22.291 1.00 3.00 C ATOM 231 C HIS 58 -23.202 -34.301 22.688 1.00 3.00 C ATOM 232 O HIS 58 -23.673 -33.169 22.571 1.00 3.00 O ATOM 233 N GLN 59 -21.985 -34.534 23.168 1.00 3.00 N ATOM 234 CA GLN 59 -21.103 -33.450 23.587 1.00 3.00 C ATOM 235 C GLN 59 -20.191 -33.021 22.444 1.00 3.00 C ATOM 236 O GLN 59 -19.485 -33.842 21.860 1.00 3.00 O ATOM 237 N LEU 60 -20.211 -31.728 22.138 1.00 3.00 N ATOM 238 CA LEU 60 -19.395 -31.174 21.062 1.00 3.00 C ATOM 239 C LEU 60 -18.593 -29.977 21.559 1.00 3.00 C ATOM 240 O LEU 60 -18.865 -29.435 22.630 1.00 3.00 O ATOM 241 N THR 61 -17.596 -29.577 20.779 1.00 3.00 N ATOM 242 CA THR 61 -16.790 -28.415 21.128 1.00 3.00 C ATOM 243 C THR 61 -17.535 -27.200 20.588 1.00 3.00 C ATOM 244 O THR 61 -18.476 -27.346 19.806 1.00 3.00 O ATOM 245 N HIS 62 -17.133 -25.988 20.997 1.00 3.00 N ATOM 246 CA HIS 62 -17.790 -24.764 20.532 1.00 3.00 C ATOM 247 C HIS 62 -18.050 -24.758 19.026 1.00 3.00 C ATOM 248 O HIS 62 -17.222 -25.223 18.241 1.00 3.00 O ATOM 249 N LEU 63 -19.203 -24.227 18.631 1.00 3.00 N ATOM 250 CA LEU 63 -19.579 -24.168 17.222 1.00 3.00 C ATOM 251 C LEU 63 -19.458 -22.756 16.655 1.00 3.00 C ATOM 252 O LEU 63 -19.503 -21.773 17.396 1.00 3.00 O ATOM 253 N SER 64 -19.306 -22.665 15.336 1.00 3.00 N ATOM 254 CA SER 64 -19.214 -21.374 14.663 1.00 3.00 C ATOM 255 C SER 64 -20.630 -20.820 14.525 1.00 3.00 C ATOM 256 O SER 64 -21.608 -21.563 14.639 1.00 3.00 O ATOM 257 N PHE 65 -20.734 -19.522 14.269 1.00 3.00 N ATOM 258 CA PHE 65 -22.028 -18.854 14.128 1.00 3.00 C ATOM 259 C PHE 65 -22.999 -19.596 13.211 1.00 3.00 C ATOM 260 O PHE 65 -24.129 -19.892 13.598 1.00 3.00 O ATOM 261 N SER 66 -22.558 -19.888 11.990 1.00 3.00 N ATOM 262 CA SER 66 -23.410 -20.577 11.039 1.00 3.00 C ATOM 263 C SER 66 -23.885 -21.943 11.501 1.00 3.00 C ATOM 264 O SER 66 -25.064 -22.277 11.374 1.00 3.00 O ATOM 265 N LYS 67 -22.968 -22.738 12.038 1.00 3.00 N ATOM 266 CA LYS 67 -23.314 -24.078 12.495 1.00 3.00 C ATOM 267 C LYS 67 -24.282 -24.041 13.671 1.00 3.00 C ATOM 268 O LYS 67 -25.240 -24.814 13.721 1.00 3.00 O ATOM 269 N MET 68 -24.034 -23.140 14.614 1.00 3.00 N ATOM 270 CA MET 68 -24.899 -23.006 15.779 1.00 3.00 C ATOM 271 C MET 68 -26.290 -22.535 15.359 1.00 3.00 C ATOM 272 O MET 68 -27.293 -22.954 15.930 1.00 3.00 O ATOM 273 N LYS 69 -26.349 -21.661 14.359 1.00 3.00 N ATOM 274 CA LYS 69 -27.633 -21.163 13.880 1.00 3.00 C ATOM 275 C LYS 69 -28.417 -22.314 13.252 1.00 3.00 C ATOM 276 O LYS 69 -29.614 -22.457 13.483 1.00 3.00 O ATOM 277 N ALA 70 -27.731 -23.136 12.461 1.00 3.00 N ATOM 278 CA ALA 70 -28.373 -24.273 11.808 1.00 3.00 C ATOM 279 C ALA 70 -28.867 -25.280 12.848 1.00 3.00 C ATOM 280 O ALA 70 -29.977 -25.805 12.741 1.00 3.00 O ATOM 281 N LEU 71 -28.043 -25.539 13.857 1.00 3.00 N ATOM 282 CA LEU 71 -28.408 -26.478 14.910 1.00 3.00 C ATOM 283 C LEU 71 -29.738 -26.853 15.567 1.00 3.00 C ATOM 284 O LEU 71 -30.109 -28.031 15.629 1.00 3.00 O ATOM 285 N LEU 72 -30.460 -25.848 16.065 1.00 3.00 N ATOM 286 CA LEU 72 -31.755 -26.039 16.725 1.00 3.00 C ATOM 287 C LEU 72 -32.865 -25.217 16.112 1.00 3.00 C ATOM 288 O LEU 72 -33.800 -24.843 16.814 1.00 3.00 O ATOM 289 N GLU 73 -32.764 -24.923 14.818 1.00 3.00 N ATOM 290 CA GLU 73 -33.762 -24.095 14.142 1.00 3.00 C ATOM 291 C GLU 73 -34.151 -24.697 12.810 1.00 3.00 C ATOM 292 O GLU 73 -33.500 -25.629 12.316 1.00 3.00 O ATOM 293 N ARG 74 -35.216 -24.156 12.212 1.00 9.00 N ATOM 294 CA ARG 74 -35.680 -24.650 10.938 1.00 9.00 C ATOM 295 C ARG 74 -36.096 -26.092 11.067 1.00 9.00 C ATOM 296 O ARG 74 -36.921 -26.423 11.928 1.00 9.00 O ATOM 297 N SER 75 -35.513 -26.945 10.238 1.00 9.00 N ATOM 298 CA SER 75 -35.844 -28.364 10.277 1.00 9.00 C ATOM 299 C SER 75 -35.359 -29.008 11.564 1.00 9.00 C ATOM 300 O SER 75 -35.807 -30.101 11.938 1.00 9.00 O ATOM 301 N HIS 76 -34.445 -28.344 12.270 1.00 3.00 N ATOM 302 CA HIS 76 -33.917 -28.884 13.512 1.00 3.00 C ATOM 303 C HIS 76 -34.539 -28.272 14.750 1.00 3.00 C ATOM 304 O HIS 76 -34.021 -28.451 15.859 1.00 3.00 O ATOM 305 N SER 77 -35.632 -27.544 14.570 1.00 3.00 N ATOM 306 CA SER 77 -36.308 -26.912 15.691 1.00 3.00 C ATOM 307 C SER 77 -36.748 -27.950 16.711 1.00 3.00 C ATOM 308 O SER 77 -36.971 -29.117 16.374 1.00 3.00 O ATOM 309 N PRO 78 -36.848 -27.527 17.961 1.00 3.00 N ATOM 310 CA PRO 78 -37.302 -28.390 19.049 1.00 3.00 C ATOM 311 C PRO 78 -37.311 -27.397 20.202 1.00 3.00 C ATOM 312 O PRO 78 -38.336 -26.784 20.498 1.00 3.00 O ATOM 313 N TYR 79 -36.161 -27.245 20.848 1.00 3.00 N ATOM 314 CA TYR 79 -36.032 -26.353 21.993 1.00 3.00 C ATOM 315 C TYR 79 -34.573 -26.031 22.285 1.00 3.00 C ATOM 316 O TYR 79 -33.678 -26.819 21.979 1.00 3.00 O ATOM 317 N TYR 80 -34.343 -24.867 22.881 1.00 3.00 N ATOM 318 CA TYR 80 -33.002 -24.438 23.245 1.00 3.00 C ATOM 319 C TYR 80 -32.914 -24.198 24.746 1.00 3.00 C ATOM 320 O TYR 80 -33.700 -23.439 25.305 1.00 3.00 O ATOM 321 N MET 81 -31.957 -24.858 25.389 1.00 3.00 N ATOM 322 CA MET 81 -31.734 -24.706 26.822 1.00 3.00 C ATOM 323 C MET 81 -30.413 -23.959 26.975 1.00 3.00 C ATOM 324 O MET 81 -29.359 -24.468 26.591 1.00 3.00 O ATOM 325 N LEU 82 -30.463 -22.752 27.529 1.00 3.00 N ATOM 326 CA LEU 82 -29.248 -21.962 27.682 1.00 3.00 C ATOM 327 C LEU 82 -29.284 -20.995 28.855 1.00 3.00 C ATOM 328 O LEU 82 -30.293 -20.872 29.551 1.00 3.00 O ATOM 329 N ASN 83 -28.162 -20.312 29.060 1.00 3.00 N ATOM 330 CA ASN 83 -28.021 -19.325 30.119 1.00 3.00 C ATOM 331 C ASN 83 -27.345 -18.093 29.522 1.00 3.00 C ATOM 332 O ASN 83 -26.758 -17.281 30.235 1.00 3.00 O ATOM 333 N ARG 84 -27.436 -17.972 28.200 1.00 3.00 N ATOM 334 CA ARG 84 -26.839 -16.853 27.482 1.00 3.00 C ATOM 335 C ARG 84 -27.915 -15.948 26.896 1.00 3.00 C ATOM 336 O ARG 84 -28.841 -16.420 26.236 1.00 3.00 O ATOM 337 N ASP 85 -27.788 -14.649 27.139 1.00 3.00 N ATOM 338 CA ASP 85 -28.758 -13.702 26.623 1.00 3.00 C ATOM 339 C ASP 85 -28.684 -13.573 25.114 1.00 3.00 C ATOM 340 O ASP 85 -29.698 -13.376 24.450 1.00 3.00 O ATOM 341 N ARG 86 -27.476 -13.681 24.570 1.00 3.00 N ATOM 342 CA ARG 86 -27.303 -13.568 23.134 1.00 3.00 C ATOM 343 C ARG 86 -28.006 -14.678 22.375 1.00 3.00 C ATOM 344 O ARG 86 -28.750 -14.421 21.429 1.00 3.00 O ATOM 345 N THR 87 -27.769 -15.917 22.795 1.00 3.00 N ATOM 346 CA THR 87 -28.378 -17.074 22.152 1.00 3.00 C ATOM 347 C THR 87 -29.887 -17.157 22.367 1.00 3.00 C ATOM 348 O THR 87 -30.565 -17.955 21.719 1.00 3.00 O ATOM 349 N LEU 88 -30.415 -16.335 23.270 1.00 3.00 N ATOM 350 CA LEU 88 -31.851 -16.340 23.532 1.00 3.00 C ATOM 351 C LEU 88 -32.558 -15.464 22.502 1.00 3.00 C ATOM 352 O LEU 88 -33.683 -15.755 22.093 1.00 3.00 O ATOM 353 N LYS 89 -31.893 -14.393 22.082 1.00 3.00 N ATOM 354 CA LYS 89 -32.464 -13.485 21.093 1.00 3.00 C ATOM 355 C LYS 89 -32.435 -14.124 19.710 1.00 3.00 C ATOM 356 O LYS 89 -33.326 -13.901 18.890 1.00 3.00 O ATOM 357 N ASN 90 -31.398 -14.912 19.451 1.00 3.00 N ATOM 358 CA ASN 90 -31.283 -15.601 18.175 1.00 3.00 C ATOM 359 C ASN 90 -32.406 -16.630 18.098 1.00 3.00 C ATOM 360 O ASN 90 -32.998 -16.841 17.041 1.00 3.00 O ATOM 361 N ILE 91 -32.709 -17.253 19.234 1.00 3.00 N ATOM 362 CA ILE 91 -33.779 -18.235 19.266 1.00 3.00 C ATOM 363 C ILE 91 -35.100 -17.581 18.915 1.00 3.00 C ATOM 364 O ILE 91 -35.937 -18.169 18.227 1.00 3.00 O ATOM 365 N THR 92 -35.280 -16.351 19.384 1.00 3.00 N ATOM 366 CA THR 92 -36.495 -15.586 19.125 1.00 3.00 C ATOM 367 C THR 92 -36.668 -15.298 17.639 1.00 3.00 C ATOM 368 O THR 92 -37.771 -15.379 17.104 1.00 3.00 O ATOM 369 N GLU 93 -35.572 -14.950 16.977 1.00 3.00 N ATOM 370 CA GLU 93 -35.615 -14.647 15.553 1.00 3.00 C ATOM 371 C GLU 93 -35.925 -15.906 14.755 1.00 3.00 C ATOM 372 O GLU 93 -36.661 -15.864 13.769 1.00 3.00 O ATOM 373 N THR 94 -35.363 -17.027 15.195 1.00 3.00 N ATOM 374 CA THR 94 -35.565 -18.301 14.522 1.00 3.00 C ATOM 375 C THR 94 -36.899 -18.957 14.870 1.00 3.00 C ATOM 376 O THR 94 -37.298 -19.939 14.244 1.00 3.00 O ATOM 377 N CYS 95 -37.589 -18.411 15.867 1.00 3.00 N ATOM 378 CA CYS 95 -38.864 -18.978 16.263 1.00 3.00 C ATOM 379 C CYS 95 -38.670 -20.275 17.024 1.00 3.00 C ATOM 380 O CYS 95 -39.547 -21.140 17.036 1.00 3.00 O ATOM 381 N LYS 96 -37.509 -20.413 17.654 1.00 3.00 N ATOM 382 CA LYS 96 -37.197 -21.606 18.426 1.00 3.00 C ATOM 383 C LYS 96 -37.398 -21.319 19.910 1.00 3.00 C ATOM 384 O LYS 96 -36.846 -20.357 20.444 1.00 3.00 O ATOM 385 N ALA 97 -38.201 -22.151 20.594 1.00 3.00 N ATOM 386 CA ALA 97 -38.456 -21.959 22.025 1.00 3.00 C ATOM 387 C ALA 97 -37.154 -21.987 22.817 1.00 3.00 C ATOM 388 O ALA 97 -36.258 -22.781 22.524 1.00 3.00 O ATOM 389 N CYS 98 -37.051 -21.119 23.817 1.00 3.00 N ATOM 390 CA CYS 98 -35.854 -21.056 24.639 1.00 3.00 C ATOM 391 C CYS 98 -36.194 -21.097 26.125 1.00 3.00 C ATOM 392 O CYS 98 -37.162 -20.478 26.570 1.00 3.00 O ATOM 393 N ALA 99 -35.393 -21.838 26.884 1.00 3.00 N ATOM 394 CA ALA 99 -35.579 -21.957 28.324 1.00 3.00 C ATOM 395 C ALA 99 -34.326 -21.440 29.018 1.00 3.00 C ATOM 396 O ALA 99 -33.274 -22.081 28.992 1.00 3.00 O ATOM 397 N GLN 100 -34.444 -20.268 29.631 1.00 3.00 N ATOM 398 CA GLN 100 -33.321 -19.646 30.319 1.00 3.00 C ATOM 399 C GLN 100 -33.122 -20.220 31.715 1.00 3.00 C ATOM 400 O GLN 100 -34.075 -20.366 32.479 1.00 3.00 O ATOM 401 N VAL 101 -31.874 -20.542 32.041 1.00 3.00 N ATOM 402 CA VAL 101 -31.543 -21.092 33.347 1.00 3.00 C ATOM 403 C VAL 101 -31.312 -19.965 34.346 1.00 3.00 C ATOM 404 O VAL 101 -30.288 -19.919 35.027 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 220 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 76.57 50.0 108 91.5 118 ARMSMC SECONDARY STRUCTURE . . 77.06 54.2 83 96.5 86 ARMSMC SURFACE . . . . . . . . 78.61 48.8 84 89.4 94 ARMSMC BURIED . . . . . . . . 68.98 54.2 24 100.0 24 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 56 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 55 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 40 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 42 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 27 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 31 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.03 (Number of atoms: 55) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.03 55 91.7 60 CRMSCA CRN = ALL/NP . . . . . 0.2187 CRMSCA SECONDARY STRUCTURE . . 12.18 42 97.7 43 CRMSCA SURFACE . . . . . . . . 12.25 43 89.6 48 CRMSCA BURIED . . . . . . . . 11.20 12 100.0 12 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.01 220 73.3 300 CRMSMC SECONDARY STRUCTURE . . 12.22 168 78.1 215 CRMSMC SURFACE . . . . . . . . 12.23 172 71.7 240 CRMSMC BURIED . . . . . . . . 11.21 48 80.0 60 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 251 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 207 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 184 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 203 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 48 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.01 220 44.8 491 CRMSALL SECONDARY STRUCTURE . . 12.22 168 47.2 356 CRMSALL SURFACE . . . . . . . . 12.23 172 43.5 395 CRMSALL BURIED . . . . . . . . 11.21 48 50.0 96 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.845 0.500 0.251 55 91.7 60 ERRCA SECONDARY STRUCTURE . . 7.932 0.498 0.250 42 97.7 43 ERRCA SURFACE . . . . . . . . 7.979 0.500 0.251 43 89.6 48 ERRCA BURIED . . . . . . . . 7.364 0.498 0.249 12 100.0 12 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.815 0.499 0.251 220 73.3 300 ERRMC SECONDARY STRUCTURE . . 7.931 0.497 0.250 168 78.1 215 ERRMC SURFACE . . . . . . . . 7.931 0.498 0.250 172 71.7 240 ERRMC BURIED . . . . . . . . 7.402 0.505 0.252 48 80.0 60 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 251 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 207 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 184 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 203 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 48 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.815 0.499 0.251 220 44.8 491 ERRALL SECONDARY STRUCTURE . . 7.931 0.497 0.250 168 47.2 356 ERRALL SURFACE . . . . . . . . 7.931 0.498 0.250 172 43.5 395 ERRALL BURIED . . . . . . . . 7.402 0.505 0.252 48 50.0 96 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 6 25 55 60 DISTCA CA (P) 0.00 0.00 0.00 10.00 41.67 60 DISTCA CA (RMS) 0.00 0.00 0.00 4.11 6.89 DISTCA ALL (N) 0 0 0 23 109 220 491 DISTALL ALL (P) 0.00 0.00 0.00 4.68 22.20 491 DISTALL ALL (RMS) 0.00 0.00 0.00 4.28 7.12 DISTALL END of the results output