####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 101 ( 404), selected 90 , name T0548TS328_1 # Molecule2: number of CA atoms 95 ( 787), selected 90 , name T0548.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS328_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 34 56 - 89 4.89 18.02 LCS_AVERAGE: 26.53 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 60 - 74 1.65 20.19 LONGEST_CONTINUOUS_SEGMENT: 15 61 - 75 1.99 20.93 LCS_AVERAGE: 10.53 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 61 - 73 0.85 21.13 LCS_AVERAGE: 7.29 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 90 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 4 4 20 3 4 6 9 9 10 12 12 14 16 20 23 25 26 28 30 31 32 33 34 LCS_GDT F 13 F 13 4 4 20 3 3 4 8 9 10 14 18 19 20 22 23 25 26 28 31 32 35 36 40 LCS_GDT H 14 H 14 4 14 20 3 3 7 11 12 15 17 18 19 20 22 23 25 26 28 31 32 35 37 41 LCS_GDT Y 15 Y 15 4 14 21 3 3 5 5 7 13 16 18 19 20 22 23 24 25 28 31 35 37 39 41 LCS_GDT T 16 T 16 4 14 21 3 3 7 11 12 15 17 18 19 21 23 24 26 30 32 35 38 41 44 45 LCS_GDT V 17 V 17 4 14 21 3 4 6 9 12 15 17 18 19 21 23 24 26 31 33 35 38 41 44 45 LCS_GDT T 18 T 18 7 14 21 3 4 7 11 12 15 17 18 19 21 23 24 29 31 33 36 38 41 44 45 LCS_GDT D 19 D 19 7 14 21 3 5 9 11 12 15 17 18 19 21 23 24 29 31 33 36 38 41 44 45 LCS_GDT I 20 I 20 8 14 21 3 5 9 11 12 15 17 18 19 21 23 24 26 30 32 35 38 41 44 45 LCS_GDT K 21 K 21 8 14 21 3 6 9 11 12 15 17 18 19 21 23 24 26 30 32 35 38 41 44 45 LCS_GDT D 22 D 22 8 14 21 3 6 9 11 12 15 17 18 19 21 23 24 26 30 32 35 38 41 44 45 LCS_GDT L 23 L 23 8 14 21 3 6 9 11 12 15 17 18 19 21 23 24 26 30 32 35 38 41 44 45 LCS_GDT T 24 T 24 8 14 21 4 6 9 11 12 15 17 18 19 21 23 24 26 30 32 35 38 41 44 45 LCS_GDT K 25 K 25 8 14 21 4 6 9 11 12 15 17 18 19 20 23 24 26 29 32 35 38 40 44 45 LCS_GDT L 26 L 26 8 14 21 4 6 9 11 12 15 17 18 19 21 23 24 26 30 32 35 38 41 44 45 LCS_GDT G 27 G 27 8 14 21 4 6 9 11 12 15 17 18 19 21 23 24 26 30 32 35 38 41 44 45 LCS_GDT A 28 A 28 3 4 21 3 3 3 3 3 6 12 15 18 21 23 24 26 30 32 35 38 41 44 45 LCS_GDT I 29 I 29 4 4 21 3 3 4 4 4 10 11 12 14 16 21 24 26 30 32 35 38 41 44 45 LCS_GDT Y 30 Y 30 4 4 21 3 3 4 4 4 6 8 10 12 16 19 21 23 26 30 35 38 41 44 45 LCS_GDT D 31 D 31 4 4 21 3 3 4 4 4 5 7 10 12 16 18 21 23 27 32 35 38 41 44 45 LCS_GDT K 32 K 32 4 4 21 3 3 4 4 5 6 8 10 12 14 16 21 23 24 27 28 31 32 33 34 LCS_GDT T 33 T 33 4 5 21 3 4 4 4 5 5 8 9 11 15 17 21 23 24 28 30 31 32 33 34 LCS_GDT K 34 K 34 4 5 21 3 4 4 4 5 6 9 11 13 16 18 21 25 26 30 30 35 38 38 43 LCS_GDT K 35 K 35 4 7 21 3 4 4 6 7 8 9 11 13 16 18 21 25 26 28 30 31 38 38 39 LCS_GDT Y 36 Y 36 5 7 21 3 4 6 6 8 11 14 18 19 20 22 23 25 26 30 32 35 38 39 42 LCS_GDT W 37 W 37 5 7 20 3 4 6 11 12 15 17 18 19 20 22 23 26 27 29 32 35 38 39 42 LCS_GDT V 38 V 38 5 7 11 3 4 6 6 7 8 8 10 11 12 14 17 19 21 25 26 28 34 36 41 LCS_GDT Y 39 Y 39 5 7 19 3 4 6 6 7 8 8 10 13 15 15 17 19 21 25 26 27 29 30 32 LCS_GDT Q 40 Q 40 5 7 19 3 5 6 6 7 8 8 10 13 15 15 17 19 20 25 26 27 28 30 30 LCS_GDT G 41 G 41 5 7 19 3 5 5 5 7 7 8 9 13 15 15 17 19 22 25 26 27 28 30 30 LCS_GDT K 42 K 42 5 6 19 3 5 5 5 6 7 8 11 13 15 17 20 21 22 25 26 27 28 30 30 LCS_GDT P 43 P 43 5 6 19 3 5 5 5 6 7 8 9 13 16 17 20 21 22 25 26 27 28 30 32 LCS_GDT V 44 V 44 5 6 19 3 5 5 5 6 7 8 12 13 16 17 20 21 22 25 26 27 28 30 30 LCS_GDT M 45 M 45 3 8 19 3 3 5 5 6 7 9 12 14 16 17 20 21 22 25 26 29 32 38 40 LCS_GDT P 46 P 46 6 8 19 4 6 6 9 9 10 12 12 14 15 17 20 21 22 27 34 38 41 44 45 LCS_GDT D 47 D 47 6 8 19 4 6 6 9 9 10 12 12 14 15 16 17 21 22 27 30 34 38 41 44 LCS_GDT Q 48 Q 48 6 8 19 4 6 6 9 9 10 12 12 14 15 21 23 27 31 33 36 38 41 44 45 LCS_GDT F 49 F 49 6 8 19 4 6 6 9 9 10 12 13 16 20 21 23 27 31 33 36 38 41 44 45 LCS_GDT T 50 T 50 6 8 19 3 6 6 9 9 10 12 12 14 15 17 20 21 25 29 34 37 40 43 45 LCS_GDT F 51 F 51 6 8 19 3 6 6 9 9 10 12 12 14 15 16 20 21 22 24 29 35 38 40 41 LCS_GDT E 52 E 52 4 8 19 3 3 6 9 9 10 12 12 13 15 16 20 29 31 33 36 38 38 40 41 LCS_GDT L 53 L 53 4 8 19 0 3 6 9 9 10 12 12 13 15 17 20 29 31 33 36 38 38 40 41 LCS_GDT L 54 L 54 4 5 19 3 4 4 4 5 5 7 9 13 14 15 20 21 22 23 24 27 30 38 39 LCS_GDT D 55 D 55 4 5 33 3 4 4 4 5 5 7 12 13 15 17 20 21 22 23 24 28 29 31 33 LCS_GDT F 56 F 56 4 5 34 3 4 4 4 5 7 10 12 14 16 19 21 25 29 31 33 36 38 40 41 LCS_GDT L 57 L 57 4 5 34 3 4 4 4 7 10 13 14 16 18 21 26 30 31 33 36 38 38 40 41 LCS_GDT H 58 H 58 3 5 34 1 3 3 4 5 10 13 16 18 19 23 26 30 31 33 36 38 38 40 41 LCS_GDT Q 59 Q 59 3 6 34 1 3 5 5 9 14 17 22 23 26 27 29 30 31 33 36 38 38 40 41 LCS_GDT L 60 L 60 3 15 34 3 4 9 13 17 20 20 22 24 26 27 29 30 31 33 36 38 38 40 41 LCS_GDT T 61 T 61 13 15 34 3 3 10 13 17 20 20 22 24 26 27 29 30 31 31 36 38 38 40 43 LCS_GDT H 62 H 62 13 15 34 4 11 12 13 17 20 20 22 24 26 27 29 30 31 31 36 38 39 43 45 LCS_GDT L 63 L 63 13 15 34 9 11 12 13 17 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT S 64 S 64 13 15 34 9 11 12 13 17 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT F 65 F 65 13 15 34 9 11 12 13 17 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT S 66 S 66 13 15 34 9 11 12 13 17 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT K 67 K 67 13 15 34 9 11 12 13 17 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT M 68 M 68 13 15 34 8 11 12 13 17 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT K 69 K 69 13 15 34 9 11 12 13 17 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT A 70 A 70 13 15 34 9 11 12 13 17 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT L 71 L 71 13 15 34 9 11 12 13 17 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT L 72 L 72 13 15 34 3 4 12 13 17 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT E 73 E 73 13 15 34 9 11 12 13 17 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT R 74 R 74 3 15 34 3 6 6 8 14 17 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT S 75 S 75 3 15 34 3 4 5 7 10 12 17 22 23 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT H 76 H 76 3 8 34 3 3 6 7 16 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT S 77 S 77 4 8 34 3 3 4 7 17 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT P 78 P 78 5 8 34 3 5 5 8 13 20 20 22 24 26 27 29 30 31 33 36 38 39 43 44 LCS_GDT Y 79 Y 79 5 8 34 3 5 5 8 14 20 20 22 24 26 27 29 30 31 33 36 38 39 43 44 LCS_GDT Y 80 Y 80 5 8 34 3 5 5 8 10 16 19 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT M 81 M 81 5 8 34 3 5 5 7 13 17 19 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT L 82 L 82 5 8 34 3 5 5 8 13 16 19 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT N 83 N 83 4 13 34 3 4 4 7 9 16 19 22 24 26 27 29 30 31 33 36 38 41 44 45 LCS_GDT R 84 R 84 12 13 34 9 12 12 12 12 12 12 14 16 23 27 29 30 31 33 36 38 41 44 45 LCS_GDT D 85 D 85 12 13 34 9 12 12 12 12 12 12 14 16 18 24 29 30 31 32 36 38 41 44 45 LCS_GDT R 86 R 86 12 13 34 9 12 12 13 17 20 20 22 24 26 27 29 30 31 32 36 38 41 44 45 LCS_GDT T 87 T 87 12 13 34 9 12 12 12 17 20 20 22 23 25 27 29 29 31 32 35 38 41 44 45 LCS_GDT L 88 L 88 12 13 34 9 12 12 12 12 12 14 16 18 23 24 26 26 30 32 35 38 41 44 45 LCS_GDT K 89 K 89 12 13 34 9 12 12 12 12 12 12 14 18 21 24 26 26 30 32 35 38 41 44 45 LCS_GDT N 90 N 90 12 13 33 9 12 12 12 12 12 12 14 15 16 17 22 24 27 31 32 35 39 42 45 LCS_GDT I 91 I 91 12 13 18 9 12 12 12 12 12 12 14 15 16 17 17 24 26 31 32 33 37 39 42 LCS_GDT T 92 T 92 12 13 18 9 12 12 12 12 12 12 14 15 16 18 20 24 26 31 32 35 38 39 41 LCS_GDT E 93 E 93 12 13 18 6 12 12 12 12 12 12 14 15 16 17 17 18 21 31 32 33 36 38 41 LCS_GDT T 94 T 94 12 13 18 6 12 12 12 12 12 12 14 15 16 17 17 17 18 19 20 22 32 33 35 LCS_GDT C 95 C 95 12 13 18 6 12 12 12 12 12 12 14 15 16 17 17 17 18 21 22 23 28 32 35 LCS_GDT K 96 K 96 3 13 18 3 3 4 5 5 8 11 13 13 16 17 17 17 18 19 20 22 24 26 29 LCS_GDT A 97 A 97 3 6 18 1 3 4 5 5 8 8 11 13 14 17 17 17 18 19 20 21 24 26 26 LCS_GDT C 98 C 98 3 3 18 3 3 3 3 5 6 7 8 12 14 15 16 17 17 18 19 22 24 26 26 LCS_GDT A 99 A 99 3 3 17 3 3 3 3 3 5 6 7 9 11 13 14 16 17 17 19 22 24 26 26 LCS_GDT Q 100 Q 100 3 3 14 3 3 3 3 3 4 4 5 9 11 13 14 16 17 17 19 22 24 26 26 LCS_GDT V 101 V 101 3 3 14 3 3 3 3 3 4 4 5 8 11 13 14 16 17 17 19 22 24 26 26 LCS_AVERAGE LCS_A: 14.78 ( 7.29 10.53 26.53 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 12 12 13 17 20 20 22 24 26 27 29 30 31 33 36 38 41 44 45 GDT PERCENT_AT 9.47 12.63 12.63 13.68 17.89 21.05 21.05 23.16 25.26 27.37 28.42 30.53 31.58 32.63 34.74 37.89 40.00 43.16 46.32 47.37 GDT RMS_LOCAL 0.32 0.60 0.60 0.85 1.71 1.96 1.96 2.33 2.95 3.22 3.29 3.55 3.97 4.05 5.11 5.31 5.60 6.44 6.70 6.79 GDT RMS_ALL_AT 19.48 19.76 19.76 21.13 19.51 19.16 19.16 19.13 17.46 17.56 17.57 17.66 17.74 17.84 16.48 16.46 16.38 14.11 14.12 14.13 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 18.371 6 0.202 0.202 18.371 0.000 0.000 LGA F 13 F 13 16.000 7 0.284 0.284 19.681 0.000 0.000 LGA H 14 H 14 18.786 6 0.549 0.549 18.786 0.000 0.000 LGA Y 15 Y 15 18.073 8 0.049 0.049 18.097 0.000 0.000 LGA T 16 T 16 17.039 3 0.011 0.011 20.795 0.000 0.000 LGA V 17 V 17 21.623 3 0.575 0.575 21.623 0.000 0.000 LGA T 18 T 18 21.705 3 0.234 0.234 22.848 0.000 0.000 LGA D 19 D 19 18.474 4 0.104 0.104 20.955 0.000 0.000 LGA I 20 I 20 23.505 4 0.417 0.417 27.723 0.000 0.000 LGA K 21 K 21 27.920 5 0.174 0.174 29.887 0.000 0.000 LGA D 22 D 22 25.464 4 0.067 0.067 25.852 0.000 0.000 LGA L 23 L 23 23.273 4 0.387 0.387 26.172 0.000 0.000 LGA T 24 T 24 30.274 3 0.033 0.033 32.495 0.000 0.000 LGA K 25 K 25 31.585 5 0.052 0.052 31.814 0.000 0.000 LGA L 26 L 26 26.750 4 0.076 0.076 28.010 0.000 0.000 LGA G 27 G 27 29.402 0 0.257 0.257 29.719 0.000 0.000 LGA A 28 A 28 28.775 1 0.640 0.640 29.758 0.000 0.000 LGA I 29 I 29 25.828 4 0.668 0.668 26.469 0.000 0.000 LGA Y 30 Y 30 23.547 8 0.234 0.234 26.002 0.000 0.000 LGA D 31 D 31 25.894 4 0.576 0.576 26.245 0.000 0.000 LGA K 32 K 32 27.205 5 0.341 0.341 27.205 0.000 0.000 LGA T 33 T 33 24.789 3 0.654 0.654 25.512 0.000 0.000 LGA K 34 K 34 23.775 5 0.634 0.634 24.163 0.000 0.000 LGA K 35 K 35 22.652 5 0.582 0.582 23.539 0.000 0.000 LGA Y 36 Y 36 22.723 8 0.120 0.120 22.820 0.000 0.000 LGA W 37 W 37 23.463 10 0.219 0.219 24.247 0.000 0.000 LGA V 38 V 38 25.803 3 0.151 0.151 26.321 0.000 0.000 LGA Y 39 Y 39 27.278 8 0.046 0.046 27.948 0.000 0.000 LGA Q 40 Q 40 30.017 5 0.086 0.086 32.084 0.000 0.000 LGA G 41 G 41 34.498 0 0.118 0.118 35.755 0.000 0.000 LGA K 42 K 42 32.497 5 0.069 0.069 32.725 0.000 0.000 LGA P 43 P 43 33.539 3 0.608 0.608 33.539 0.000 0.000 LGA V 44 V 44 29.270 3 0.623 0.623 30.971 0.000 0.000 LGA M 45 M 45 22.143 4 0.560 0.560 24.799 0.000 0.000 LGA P 46 P 46 22.881 3 0.521 0.521 22.881 0.000 0.000 LGA D 47 D 47 23.391 4 0.194 0.194 23.391 0.000 0.000 LGA Q 48 Q 48 17.066 5 0.075 0.075 19.320 0.000 0.000 LGA F 49 F 49 14.528 7 0.051 0.051 15.841 0.000 0.000 LGA T 50 T 50 18.139 3 0.021 0.021 18.246 0.000 0.000 LGA F 51 F 51 19.399 7 0.078 0.078 19.399 0.000 0.000 LGA E 52 E 52 15.867 5 0.591 0.591 16.820 0.000 0.000 LGA L 53 L 53 13.728 4 0.556 0.556 15.414 0.000 0.000 LGA L 54 L 54 17.210 4 0.572 0.572 17.414 0.000 0.000 LGA D 55 D 55 19.144 4 0.143 0.143 19.144 0.000 0.000 LGA F 56 F 56 13.424 7 0.290 0.290 15.202 0.000 0.000 LGA L 57 L 57 9.472 4 0.600 0.600 10.924 0.357 0.179 LGA H 58 H 58 10.486 6 0.609 0.609 10.486 1.548 0.619 LGA Q 59 Q 59 6.783 5 0.621 0.621 8.305 16.429 7.302 LGA L 60 L 60 1.674 4 0.665 0.665 3.144 67.619 33.810 LGA T 61 T 61 2.881 3 0.663 0.663 2.881 65.119 37.211 LGA H 62 H 62 1.717 6 0.512 0.512 1.909 77.143 30.857 LGA L 63 L 63 1.411 4 0.032 0.032 1.872 81.548 40.774 LGA S 64 S 64 0.550 2 0.056 0.056 0.830 92.857 61.905 LGA F 65 F 65 1.547 7 0.054 0.054 1.547 81.548 29.654 LGA S 66 S 66 1.822 2 0.060 0.060 1.822 77.143 51.429 LGA K 67 K 67 1.381 5 0.040 0.040 1.403 83.690 37.196 LGA M 68 M 68 0.934 4 0.052 0.052 1.475 90.595 45.298 LGA K 69 K 69 0.528 5 0.052 0.052 0.528 97.619 43.386 LGA A 70 A 70 1.605 1 0.028 0.028 2.121 75.238 60.190 LGA L 71 L 71 2.466 4 0.165 0.165 2.466 66.786 33.393 LGA L 72 L 72 2.134 4 0.410 0.410 2.746 62.857 31.429 LGA E 73 E 73 1.559 5 0.629 0.629 1.706 77.143 34.286 LGA R 74 R 74 3.936 7 0.520 0.520 4.480 43.452 15.801 LGA S 75 S 75 4.571 2 0.025 0.025 4.571 47.262 31.508 LGA H 76 H 76 2.947 6 0.271 0.271 3.909 57.619 23.048 LGA S 77 S 77 2.336 2 0.048 0.048 3.177 63.095 42.063 LGA P 78 P 78 2.927 3 0.381 0.381 3.140 53.571 30.612 LGA Y 79 Y 79 3.268 8 0.037 0.037 5.097 39.405 13.135 LGA Y 80 Y 80 6.664 8 0.073 0.073 6.664 20.714 6.905 LGA M 81 M 81 6.509 4 0.077 0.077 8.996 9.167 4.583 LGA L 82 L 82 8.199 4 0.159 0.159 8.199 9.762 4.881 LGA N 83 N 83 8.951 4 0.085 0.085 9.003 4.048 2.024 LGA R 84 R 84 7.543 7 0.533 0.533 7.802 15.714 5.714 LGA D 85 D 85 7.779 4 0.036 0.036 7.915 16.667 8.333 LGA R 86 R 86 1.546 7 0.022 0.022 3.939 64.167 23.333 LGA T 87 T 87 2.520 3 0.167 0.167 6.098 52.024 29.728 LGA L 88 L 88 6.974 4 0.059 0.059 10.785 13.333 6.667 LGA K 89 K 89 9.235 5 0.116 0.116 12.387 2.143 0.952 LGA N 90 N 90 10.763 4 0.055 0.055 14.880 0.714 0.357 LGA I 91 I 91 13.609 4 0.068 0.068 18.024 0.000 0.000 LGA T 92 T 92 17.673 3 0.040 0.040 21.370 0.000 0.000 LGA E 93 E 93 18.843 5 0.111 0.111 22.746 0.000 0.000 LGA T 94 T 94 21.921 3 0.056 0.056 25.335 0.000 0.000 LGA C 95 C 95 24.936 2 0.437 0.437 26.916 0.000 0.000 LGA K 96 K 96 26.616 5 0.642 0.642 27.164 0.000 0.000 LGA A 97 A 97 27.599 1 0.591 0.591 27.599 0.000 0.000 LGA C 98 C 98 23.795 2 0.615 0.615 27.225 0.000 0.000 LGA A 99 A 99 26.615 1 0.597 0.597 27.066 0.000 0.000 LGA Q 100 Q 100 27.951 5 0.578 0.578 31.310 0.000 0.000 LGA V 101 V 101 28.511 3 0.307 0.307 29.994 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 90 360 360 100.00 753 360 47.81 95 SUMMARY(RMSD_GDC): 13.579 13.592 13.592 17.138 8.722 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 101 95 4.0 22 2.33 21.842 19.395 0.906 LGA_LOCAL RMSD: 2.328 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 19.128 Number of assigned atoms: 90 Std_ASGN_ATOMS RMSD: 13.579 Standard rmsd on all 90 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.230351 * X + 0.972739 * Y + 0.026801 * Z + -16.036674 Y_new = 0.881965 * X + 0.197058 * Y + 0.428143 * Z + -46.650139 Z_new = 0.411190 * X + 0.122260 * Y + -0.903314 * Z + -33.114712 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.826268 -0.423759 3.007063 [DEG: 104.6375 -24.2796 172.2921 ] ZXZ: 3.079076 2.698228 1.281788 [DEG: 176.4181 154.5971 73.4410 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS328_1 REMARK 2: T0548.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS328_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 101 95 4.0 22 2.33 19.395 13.58 REMARK ---------------------------------------------------------- MOLECULE T0548TS328_1 PFRMAT TS TARGET T0548 MODEL 1 PARENT 1v4v_B ATOM 1 N MET 1 -25.072 -28.167 9.888 1.00 3.00 ATOM 2 CA MET 1 -25.139 -28.840 11.178 1.00 3.00 ATOM 3 C MET 1 -23.826 -29.543 11.485 1.00 3.00 ATOM 4 O MET 1 -23.047 -29.843 10.583 1.00 3.00 ATOM 5 N ILE 2 -23.553 -29.797 12.773 1.00 3.00 ATOM 6 CA ILE 2 -22.306 -30.484 13.136 1.00 3.00 ATOM 7 C ILE 2 -23.333 -31.677 13.099 1.00 3.00 ATOM 8 O ILE 2 -23.392 -32.277 11.982 1.00 3.00 ATOM 9 N GLU 3 -23.837 -31.949 14.175 1.00 3.00 ATOM 10 CA GLU 3 -24.783 -33.132 14.218 1.00 3.00 ATOM 11 C GLU 3 -26.308 -32.874 14.410 1.00 3.00 ATOM 12 O GLU 3 -26.658 -31.918 15.084 1.00 3.00 ATOM 13 N ASN 4 -26.977 -33.701 13.804 1.00 3.00 ATOM 14 CA ASN 4 -28.491 -33.667 13.931 1.00 3.00 ATOM 15 C ASN 4 -29.161 -35.089 14.140 1.00 3.00 ATOM 16 O ASN 4 -28.417 -36.061 13.861 1.00 3.00 ATOM 17 N SER 5 -30.274 -35.034 14.595 1.00 3.00 ATOM 18 CA SER 5 -30.980 -36.355 14.857 1.00 3.00 ATOM 19 C SER 5 -32.538 -36.367 14.774 1.00 3.00 ATOM 20 O SER 5 -33.086 -35.373 14.310 1.00 3.00 ATOM 21 N SER 6 -33.034 -37.476 15.227 1.00 3.00 ATOM 22 CA SER 6 -34.526 -37.534 15.219 1.00 3.00 ATOM 23 C SER 6 -35.357 -36.615 16.189 1.00 3.00 ATOM 24 O SER 6 -36.143 -37.070 16.947 1.00 3.00 ATOM 25 N PRO 7 -34.980 -35.405 16.034 1.00 3.00 ATOM 26 CA PRO 7 -35.651 -34.319 16.873 1.00 3.00 ATOM 27 C PRO 7 -34.444 -34.000 17.763 1.00 3.00 ATOM 28 O PRO 7 -33.844 -34.897 18.360 1.00 3.00 ATOM 29 N TYR 8 -34.105 -32.716 17.849 1.00 3.00 ATOM 30 CA TYR 8 -32.973 -32.271 18.655 1.00 3.00 ATOM 31 C TYR 8 -33.362 -31.252 19.718 1.00 3.00 ATOM 32 O TYR 8 -34.385 -30.577 19.617 1.00 3.00 ATOM 33 N THR 9 -32.513 -31.152 20.733 1.00 3.00 ATOM 34 CA THR 9 -32.677 -30.202 21.822 1.00 3.00 ATOM 35 C THR 9 -31.285 -29.635 22.038 1.00 3.00 ATOM 36 O THR 9 -30.368 -30.358 22.435 1.00 3.00 ATOM 37 N SER 10 -31.120 -28.349 21.754 1.00 3.00 ATOM 38 CA SER 10 -29.823 -27.707 21.911 1.00 3.00 ATOM 39 C SER 10 -29.635 -27.165 23.318 1.00 3.00 ATOM 40 O SER 10 -30.506 -26.483 23.855 1.00 3.00 ATOM 41 N GLU 11 -28.485 -27.479 23.907 1.00 3.00 ATOM 42 CA GLU 11 -28.158 -27.035 25.256 1.00 3.00 ATOM 43 C GLU 11 -26.816 -26.313 25.254 1.00 3.00 ATOM 44 O GLU 11 -25.850 -26.793 24.663 1.00 3.00 ATOM 45 N HIS 12 -26.765 -25.159 25.913 1.00 3.00 ATOM 46 CA HIS 12 -25.540 -24.374 25.992 1.00 3.00 ATOM 47 C HIS 12 -25.503 -23.517 27.253 1.00 3.00 ATOM 48 O HIS 12 -26.126 -22.457 27.307 1.00 3.00 ATOM 49 N PHE 13 -24.774 -23.979 28.264 1.00 3.00 ATOM 50 CA PHE 13 -24.643 -23.240 29.516 1.00 3.00 ATOM 51 C PHE 13 -23.323 -22.472 29.469 1.00 3.00 ATOM 52 O PHE 13 -22.331 -22.879 30.074 1.00 3.00 ATOM 53 N HIS 14 -23.328 -21.358 28.741 1.00 3.00 ATOM 54 CA HIS 14 -22.137 -20.519 28.553 1.00 3.00 ATOM 55 C HIS 14 -21.416 -20.872 29.829 1.00 3.00 ATOM 56 O HIS 14 -20.266 -21.302 29.811 1.00 3.00 ATOM 57 N TYR 15 -22.078 -20.692 30.956 1.00 3.00 ATOM 58 CA TYR 15 -21.477 -20.985 32.241 1.00 3.00 ATOM 59 C TYR 15 -22.303 -22.054 32.952 1.00 3.00 ATOM 60 O TYR 15 -23.493 -22.222 32.677 1.00 3.00 ATOM 61 N THR 16 -21.677 -22.786 33.871 1.00 3.00 ATOM 62 CA THR 16 -22.400 -23.813 34.595 1.00 3.00 ATOM 63 C THR 16 -21.545 -24.368 35.717 1.00 3.00 ATOM 64 O THR 16 -20.346 -24.105 35.783 1.00 3.00 ATOM 65 N VAL 17 -22.182 -25.138 36.595 1.00 3.00 ATOM 66 CA VAL 17 -21.445 -25.750 37.690 1.00 3.00 ATOM 67 C VAL 17 -22.314 -26.224 38.828 1.00 3.00 ATOM 68 O VAL 17 -23.139 -25.480 39.323 1.00 3.00 ATOM 69 N THR 18 -22.115 -27.477 39.242 1.00 3.00 ATOM 70 CA THR 18 -23.411 -28.416 39.709 1.00 3.00 ATOM 71 C THR 18 -24.687 -28.768 38.973 1.00 3.00 ATOM 72 O THR 18 -25.230 -29.850 39.151 1.00 3.00 ATOM 73 N ASP 19 -25.197 -27.838 38.163 1.00 3.00 ATOM 74 CA ASP 19 -26.432 -28.098 37.400 1.00 3.00 ATOM 75 C ASP 19 -26.236 -29.062 36.213 1.00 3.00 ATOM 76 O ASP 19 -27.149 -29.830 35.890 1.00 3.00 ATOM 77 N ILE 20 -25.043 -29.052 35.608 1.00 3.00 ATOM 78 CA ILE 20 -24.745 -29.928 34.469 1.00 3.00 ATOM 79 C ILE 20 -24.609 -31.403 34.874 1.00 3.00 ATOM 80 O ILE 20 -23.687 -32.091 34.437 1.00 3.00 ATOM 81 N LYS 21 -25.536 -31.860 35.718 1.00 3.00 ATOM 82 CA LYS 21 -25.573 -33.235 36.219 1.00 3.00 ATOM 83 C LYS 21 -27.009 -33.746 36.395 1.00 3.00 ATOM 84 O LYS 21 -27.224 -34.944 36.575 1.00 3.00 ATOM 85 N ASP 22 -27.985 -32.830 36.387 1.00 3.00 ATOM 86 CA ASP 22 -29.409 -33.207 36.453 1.00 3.00 ATOM 87 C ASP 22 -29.831 -33.202 34.969 1.00 3.00 ATOM 88 O ASP 22 -30.747 -33.925 34.560 1.00 3.00 ATOM 89 N LEU 23 -29.150 -32.349 34.199 1.00 3.00 ATOM 90 CA LEU 23 -29.333 -32.196 32.743 1.00 3.00 ATOM 91 C LEU 23 -29.838 -34.045 31.773 1.00 3.00 ATOM 92 O LEU 23 -30.458 -34.514 30.820 1.00 3.00 ATOM 93 N THR 24 -29.087 -34.787 32.577 1.00 3.00 ATOM 94 CA THR 24 -28.955 -36.225 32.379 1.00 3.00 ATOM 95 C THR 24 -30.285 -36.926 32.627 1.00 3.00 ATOM 96 O THR 24 -30.696 -37.796 31.861 1.00 3.00 ATOM 97 N LYS 25 -30.959 -36.528 33.700 1.00 3.00 ATOM 98 CA LYS 25 -32.237 -37.118 34.066 1.00 3.00 ATOM 99 C LYS 25 -33.364 -36.778 33.093 1.00 3.00 ATOM 100 O LYS 25 -34.277 -37.583 32.895 1.00 3.00 ATOM 101 N LEU 26 -33.311 -35.594 32.489 1.00 3.00 ATOM 102 CA LEU 26 -34.339 -35.209 31.525 1.00 3.00 ATOM 103 C LEU 26 -34.107 -35.977 30.230 1.00 3.00 ATOM 104 O LEU 26 -35.052 -36.346 29.537 1.00 3.00 ATOM 105 N GLY 27 -32.840 -36.223 29.915 1.00 3.00 ATOM 106 CA GLY 27 -32.485 -36.963 28.712 1.00 3.00 ATOM 107 C GLY 27 -33.023 -38.384 28.832 1.00 3.00 ATOM 108 O GLY 27 -33.385 -39.010 27.837 1.00 3.00 ATOM 109 N ALA 28 -33.075 -38.887 30.062 1.00 3.00 ATOM 110 CA ALA 28 -33.576 -40.232 30.318 1.00 3.00 ATOM 111 C ALA 28 -35.093 -40.235 30.208 1.00 3.00 ATOM 112 O ALA 28 -35.698 -41.246 29.850 1.00 3.00 ATOM 113 N ILE 29 -35.701 -39.093 30.516 1.00 3.00 ATOM 114 CA ILE 29 -37.149 -38.952 30.445 1.00 3.00 ATOM 115 C ILE 29 -37.587 -38.823 28.990 1.00 3.00 ATOM 116 O ILE 29 -38.770 -38.938 28.672 1.00 3.00 ATOM 117 N TYR 30 -36.617 -38.588 28.112 1.00 3.00 ATOM 118 CA TYR 30 -36.885 -38.437 26.687 1.00 3.00 ATOM 119 C TYR 30 -35.817 -39.168 25.879 1.00 3.00 ATOM 120 O TYR 30 -34.922 -38.547 25.308 1.00 3.00 ATOM 121 N ASP 31 -35.902 -40.508 25.825 1.00 3.00 ATOM 122 CA ASP 31 -34.950 -41.348 25.094 1.00 3.00 ATOM 123 C ASP 31 -35.034 -41.198 23.578 1.00 3.00 ATOM 124 O ASP 31 -34.082 -41.509 22.862 1.00 3.00 ATOM 125 N LYS 32 -36.176 -40.724 23.092 1.00 3.00 ATOM 126 CA LYS 32 -36.374 -40.547 21.660 1.00 3.00 ATOM 127 C LYS 32 -35.959 -39.160 21.180 1.00 3.00 ATOM 128 O LYS 32 -36.275 -38.761 20.058 1.00 3.00 ATOM 129 N THR 33 -35.254 -38.427 22.036 1.00 3.00 ATOM 130 CA THR 33 -34.782 -37.088 21.698 1.00 3.00 ATOM 131 C THR 33 -33.273 -37.007 21.876 1.00 3.00 ATOM 132 O THR 33 -32.723 -37.544 22.835 1.00 3.00 ATOM 133 N LYS 34 -32.605 -36.337 20.944 1.00 3.00 ATOM 134 CA LYS 34 -31.157 -36.190 21.005 1.00 3.00 ATOM 135 C LYS 34 -30.784 -34.810 21.533 1.00 3.00 ATOM 136 O LYS 34 -31.222 -33.794 20.992 1.00 3.00 ATOM 137 N LYS 35 -29.976 -34.779 22.587 1.00 3.00 ATOM 138 CA LYS 35 -29.551 -33.520 23.179 1.00 3.00 ATOM 139 C LYS 35 -28.122 -33.189 22.770 1.00 3.00 ATOM 140 O LYS 35 -27.179 -33.882 23.152 1.00 3.00 ATOM 141 N TYR 36 -27.973 -32.129 21.980 1.00 3.00 ATOM 142 CA TYR 36 -26.662 -31.693 21.512 1.00 3.00 ATOM 143 C TYR 36 -26.167 -30.575 22.420 1.00 3.00 ATOM 144 O TYR 36 -26.862 -29.580 22.623 1.00 3.00 ATOM 145 N TRP 37 -24.962 -30.735 22.955 1.00 3.00 ATOM 146 CA TRP 37 -24.408 -29.744 23.868 1.00 3.00 ATOM 147 C TRP 37 -22.944 -29.408 23.610 1.00 3.00 ATOM 148 O TRP 37 -22.048 -30.178 23.960 1.00 3.00 ATOM 149 N VAL 38 -22.685 -28.254 22.973 1.00 3.00 ATOM 150 CA VAL 38 -21.321 -27.808 22.669 1.00 3.00 ATOM 151 C VAL 38 -20.684 -27.173 23.906 1.00 3.00 ATOM 152 O VAL 38 -21.031 -26.053 24.279 1.00 3.00 ATOM 153 N TYR 39 -19.758 -27.889 24.537 1.00 3.00 ATOM 154 CA TYR 39 -19.081 -27.388 25.732 1.00 3.00 ATOM 155 C TYR 39 -17.898 -26.500 25.348 1.00 3.00 ATOM 156 O TYR 39 -17.224 -26.755 24.352 1.00 3.00 ATOM 157 N GLN 40 -17.645 -25.467 26.150 1.00 3.00 ATOM 158 CA GLN 40 -16.560 -24.521 25.885 1.00 3.00 ATOM 159 C GLN 40 -15.164 -25.063 26.170 1.00 3.00 ATOM 160 O GLN 40 -14.245 -24.293 26.453 1.00 3.00 ATOM 161 N GLY 41 -15.003 -26.380 26.083 1.00 3.00 ATOM 162 CA GLY 41 -13.720 -27.030 26.334 1.00 3.00 ATOM 163 C GLY 41 -12.911 -26.339 27.432 1.00 3.00 ATOM 164 O GLY 41 -11.682 -26.310 27.385 1.00 3.00 ATOM 165 N LYS 42 -13.609 -25.787 28.420 1.00 3.00 ATOM 166 CA LYS 42 -12.957 -25.100 29.529 1.00 3.00 ATOM 167 C LYS 42 -12.687 -26.086 30.660 1.00 3.00 ATOM 168 O LYS 42 -13.553 -26.881 31.020 1.00 3.00 ATOM 169 N PRO 43 -11.475 -26.043 31.235 1.00 3.00 ATOM 170 CA PRO 43 -11.092 -26.939 32.331 1.00 3.00 ATOM 171 C PRO 43 -12.146 -27.017 33.433 1.00 3.00 ATOM 172 O PRO 43 -12.553 -28.105 33.837 1.00 3.00 ATOM 173 N VAL 44 -12.582 -25.856 33.907 1.00 3.00 ATOM 174 CA VAL 44 -13.582 -25.780 34.966 1.00 3.00 ATOM 175 C VAL 44 -14.944 -26.293 34.507 1.00 3.00 ATOM 176 O VAL 44 -15.672 -26.916 35.279 1.00 3.00 ATOM 177 N MET 45 -15.284 -26.026 33.249 1.00 3.00 ATOM 178 CA MET 45 -16.562 -26.457 32.693 1.00 3.00 ATOM 179 C MET 45 -16.543 -27.951 32.381 1.00 3.00 ATOM 180 O MET 45 -17.304 -28.725 32.961 1.00 3.00 ATOM 181 N PRO 46 -15.673 -28.342 31.455 1.00 3.00 ATOM 182 CA PRO 46 -15.525 -29.738 31.054 1.00 3.00 ATOM 183 C PRO 46 -15.510 -30.664 32.265 1.00 3.00 ATOM 184 O PRO 46 -16.336 -31.571 32.382 1.00 3.00 ATOM 185 N ASP 47 -14.560 -30.418 33.159 1.00 3.00 ATOM 186 CA ASP 47 -14.386 -31.206 34.374 1.00 3.00 ATOM 187 C ASP 47 -15.659 -31.300 35.214 1.00 3.00 ATOM 188 O ASP 47 -15.764 -32.154 36.094 1.00 3.00 ATOM 189 N GLN 48 -16.626 -30.431 34.936 1.00 3.00 ATOM 190 CA GLN 48 -17.875 -30.419 35.690 1.00 3.00 ATOM 191 C GLN 48 -19.059 -31.051 34.962 1.00 3.00 ATOM 192 O GLN 48 -19.965 -31.588 35.598 1.00 3.00 ATOM 193 N PHE 49 -19.055 -30.989 33.634 1.00 3.00 ATOM 194 CA PHE 49 -20.158 -31.543 32.857 1.00 3.00 ATOM 195 C PHE 49 -19.892 -32.916 32.241 1.00 3.00 ATOM 196 O PHE 49 -20.734 -33.807 32.327 1.00 3.00 ATOM 197 N THR 50 -18.729 -33.087 31.623 1.00 3.00 ATOM 198 CA THR 50 -18.389 -34.356 30.989 1.00 3.00 ATOM 199 C THR 50 -18.494 -35.566 31.912 1.00 3.00 ATOM 200 O THR 50 -19.082 -36.582 31.544 1.00 3.00 ATOM 201 N PHE 51 -17.924 -35.478 33.123 1.00 3.00 ATOM 202 CA PHE 51 -17.998 -36.610 34.051 1.00 3.00 ATOM 203 C PHE 51 -18.910 -37.786 33.724 1.00 3.00 ATOM 204 O PHE 51 -18.434 -38.884 33.498 1.00 3.00 ATOM 205 N GLU 52 -20.215 -37.560 33.715 1.00 3.00 ATOM 206 CA GLU 52 -21.141 -38.647 33.430 1.00 3.00 ATOM 207 C GLU 52 -22.173 -38.228 32.385 1.00 3.00 ATOM 208 O GLU 52 -22.779 -37.166 32.487 1.00 3.00 ATOM 209 N LEU 53 -22.352 -39.081 31.382 1.00 3.00 ATOM 210 CA LEU 53 -23.294 -38.814 30.299 1.00 3.00 ATOM 211 C LEU 53 -24.319 -39.928 30.212 1.00 3.00 ATOM 212 O LEU 53 -24.060 -41.056 30.602 1.00 3.00 ATOM 213 N LEU 54 -25.489 -39.593 29.670 1.00 3.00 ATOM 214 CA LEU 54 -26.532 -40.582 29.501 1.00 3.00 ATOM 215 C LEU 54 -26.335 -41.223 28.135 1.00 3.00 ATOM 216 O LEU 54 -25.298 -41.026 27.503 1.00 3.00 ATOM 217 N ASP 55 -27.310 -41.996 27.678 1.00 3.00 ATOM 218 CA ASP 55 -27.221 -42.645 26.366 1.00 3.00 ATOM 219 C ASP 55 -27.648 -41.712 25.234 1.00 3.00 ATOM 220 O ASP 55 -27.300 -41.921 24.077 1.00 3.00 ATOM 221 N PHE 56 -28.408 -40.667 25.576 1.00 3.00 ATOM 222 CA PHE 56 -28.868 -39.725 24.573 1.00 3.00 ATOM 223 C PHE 56 -28.272 -38.337 24.362 1.00 3.00 ATOM 224 O PHE 56 -28.833 -37.516 23.635 1.00 3.00 ATOM 225 N LEU 57 -27.138 -38.082 25.004 1.00 3.00 ATOM 226 CA LEU 57 -26.467 -36.795 24.898 1.00 3.00 ATOM 227 C LEU 57 -25.323 -36.818 23.893 1.00 3.00 ATOM 228 O LEU 57 -24.669 -37.843 23.699 1.00 3.00 ATOM 229 N HIS 58 -25.090 -35.673 23.260 1.00 3.00 ATOM 230 CA HIS 58 -24.015 -35.526 22.291 1.00 3.00 ATOM 231 C HIS 58 -23.202 -34.301 22.688 1.00 3.00 ATOM 232 O HIS 58 -23.673 -33.169 22.571 1.00 3.00 ATOM 233 N GLN 59 -21.985 -34.534 23.168 1.00 3.00 ATOM 234 CA GLN 59 -21.103 -33.450 23.587 1.00 3.00 ATOM 235 C GLN 59 -20.191 -33.021 22.444 1.00 3.00 ATOM 236 O GLN 59 -19.485 -33.842 21.860 1.00 3.00 ATOM 237 N LEU 60 -20.211 -31.728 22.138 1.00 3.00 ATOM 238 CA LEU 60 -19.395 -31.174 21.062 1.00 3.00 ATOM 239 C LEU 60 -18.593 -29.977 21.559 1.00 3.00 ATOM 240 O LEU 60 -18.865 -29.435 22.630 1.00 3.00 ATOM 241 N THR 61 -17.596 -29.577 20.779 1.00 3.00 ATOM 242 CA THR 61 -16.790 -28.415 21.128 1.00 3.00 ATOM 243 C THR 61 -17.535 -27.200 20.588 1.00 3.00 ATOM 244 O THR 61 -18.476 -27.346 19.806 1.00 3.00 ATOM 245 N HIS 62 -17.133 -25.988 20.997 1.00 3.00 ATOM 246 CA HIS 62 -17.790 -24.764 20.532 1.00 3.00 ATOM 247 C HIS 62 -18.050 -24.758 19.026 1.00 3.00 ATOM 248 O HIS 62 -17.222 -25.223 18.241 1.00 3.00 ATOM 249 N LEU 63 -19.203 -24.227 18.631 1.00 3.00 ATOM 250 CA LEU 63 -19.579 -24.168 17.222 1.00 3.00 ATOM 251 C LEU 63 -19.458 -22.756 16.655 1.00 3.00 ATOM 252 O LEU 63 -19.503 -21.773 17.396 1.00 3.00 ATOM 253 N SER 64 -19.306 -22.665 15.336 1.00 3.00 ATOM 254 CA SER 64 -19.214 -21.374 14.663 1.00 3.00 ATOM 255 C SER 64 -20.630 -20.820 14.525 1.00 3.00 ATOM 256 O SER 64 -21.608 -21.563 14.639 1.00 3.00 ATOM 257 N PHE 65 -20.734 -19.522 14.269 1.00 3.00 ATOM 258 CA PHE 65 -22.028 -18.854 14.128 1.00 3.00 ATOM 259 C PHE 65 -22.999 -19.596 13.211 1.00 3.00 ATOM 260 O PHE 65 -24.129 -19.892 13.598 1.00 3.00 ATOM 261 N SER 66 -22.558 -19.888 11.990 1.00 3.00 ATOM 262 CA SER 66 -23.410 -20.577 11.039 1.00 3.00 ATOM 263 C SER 66 -23.885 -21.943 11.501 1.00 3.00 ATOM 264 O SER 66 -25.064 -22.277 11.374 1.00 3.00 ATOM 265 N LYS 67 -22.968 -22.738 12.038 1.00 3.00 ATOM 266 CA LYS 67 -23.314 -24.078 12.495 1.00 3.00 ATOM 267 C LYS 67 -24.282 -24.041 13.671 1.00 3.00 ATOM 268 O LYS 67 -25.240 -24.814 13.721 1.00 3.00 ATOM 269 N MET 68 -24.034 -23.140 14.613 1.00 3.00 ATOM 270 CA MET 68 -24.899 -23.006 15.779 1.00 3.00 ATOM 271 C MET 68 -26.290 -22.535 15.359 1.00 3.00 ATOM 272 O MET 68 -27.293 -22.954 15.930 1.00 3.00 ATOM 273 N LYS 69 -26.349 -21.661 14.359 1.00 3.00 ATOM 274 CA LYS 69 -27.633 -21.163 13.880 1.00 3.00 ATOM 275 C LYS 69 -28.417 -22.314 13.252 1.00 3.00 ATOM 276 O LYS 69 -29.614 -22.457 13.483 1.00 3.00 ATOM 277 N ALA 70 -27.731 -23.136 12.461 1.00 3.00 ATOM 278 CA ALA 70 -28.373 -24.273 11.808 1.00 3.00 ATOM 279 C ALA 70 -28.867 -25.280 12.848 1.00 3.00 ATOM 280 O ALA 70 -29.977 -25.805 12.741 1.00 3.00 ATOM 281 N LEU 71 -28.043 -25.539 13.857 1.00 3.00 ATOM 282 CA LEU 71 -28.408 -26.478 14.910 1.00 3.00 ATOM 283 C LEU 71 -29.738 -26.853 15.567 1.00 3.00 ATOM 284 O LEU 71 -30.109 -28.031 15.629 1.00 3.00 ATOM 285 N LEU 72 -30.460 -25.848 16.065 1.00 3.00 ATOM 286 CA LEU 72 -31.755 -26.039 16.725 1.00 3.00 ATOM 287 C LEU 72 -32.865 -25.217 16.112 1.00 3.00 ATOM 288 O LEU 72 -33.800 -24.843 16.814 1.00 3.00 ATOM 289 N GLU 73 -32.764 -24.923 14.818 1.00 3.00 ATOM 290 CA GLU 73 -33.762 -24.095 14.142 1.00 3.00 ATOM 291 C GLU 73 -34.151 -24.697 12.810 1.00 3.00 ATOM 292 O GLU 73 -33.500 -25.629 12.316 1.00 3.00 ATOM 293 N ARG 74 -35.216 -24.156 12.212 1.00 9.00 ATOM 294 CA ARG 74 -35.680 -24.650 10.938 1.00 9.00 ATOM 295 C ARG 74 -36.096 -26.092 11.067 1.00 9.00 ATOM 296 O ARG 74 -36.921 -26.423 11.928 1.00 9.00 ATOM 297 N SER 75 -35.513 -26.945 10.238 1.00 9.00 ATOM 298 CA SER 75 -35.844 -28.364 10.277 1.00 9.00 ATOM 299 C SER 75 -35.359 -29.008 11.564 1.00 9.00 ATOM 300 O SER 75 -35.807 -30.101 11.938 1.00 9.00 ATOM 301 N HIS 76 -34.445 -28.344 12.270 1.00 3.00 ATOM 302 CA HIS 76 -33.917 -28.884 13.512 1.00 3.00 ATOM 303 C HIS 76 -34.539 -28.272 14.750 1.00 3.00 ATOM 304 O HIS 76 -34.021 -28.451 15.859 1.00 3.00 ATOM 305 N SER 77 -35.632 -27.544 14.570 1.00 3.00 ATOM 306 CA SER 77 -36.308 -26.912 15.691 1.00 3.00 ATOM 307 C SER 77 -36.748 -27.950 16.711 1.00 3.00 ATOM 308 O SER 77 -36.971 -29.117 16.374 1.00 3.00 ATOM 309 N PRO 78 -36.848 -27.527 17.961 1.00 3.00 ATOM 310 CA PRO 78 -37.302 -28.390 19.049 1.00 3.00 ATOM 311 C PRO 78 -37.311 -27.397 20.202 1.00 3.00 ATOM 312 O PRO 78 -38.336 -26.784 20.498 1.00 3.00 ATOM 313 N TYR 79 -36.161 -27.245 20.848 1.00 3.00 ATOM 314 CA TYR 79 -36.032 -26.353 21.993 1.00 3.00 ATOM 315 C TYR 79 -34.573 -26.031 22.285 1.00 3.00 ATOM 316 O TYR 79 -33.678 -26.819 21.979 1.00 3.00 ATOM 317 N TYR 80 -34.343 -24.867 22.881 1.00 3.00 ATOM 318 CA TYR 80 -33.002 -24.438 23.245 1.00 3.00 ATOM 319 C TYR 80 -32.914 -24.198 24.746 1.00 3.00 ATOM 320 O TYR 80 -33.700 -23.439 25.305 1.00 3.00 ATOM 321 N MET 81 -31.957 -24.858 25.389 1.00 3.00 ATOM 322 CA MET 81 -31.734 -24.706 26.822 1.00 3.00 ATOM 323 C MET 81 -30.413 -23.959 26.975 1.00 3.00 ATOM 324 O MET 81 -29.359 -24.468 26.591 1.00 3.00 ATOM 325 N LEU 82 -30.463 -22.752 27.529 1.00 3.00 ATOM 326 CA LEU 82 -29.248 -21.962 27.682 1.00 3.00 ATOM 327 C LEU 82 -29.284 -20.995 28.855 1.00 3.00 ATOM 328 O LEU 82 -30.293 -20.872 29.551 1.00 3.00 ATOM 329 N ASN 83 -28.162 -20.312 29.060 1.00 3.00 ATOM 330 CA ASN 83 -28.021 -19.325 30.119 1.00 3.00 ATOM 331 C ASN 83 -27.345 -18.093 29.522 1.00 3.00 ATOM 332 O ASN 83 -26.758 -17.281 30.235 1.00 3.00 ATOM 333 N ARG 84 -27.436 -17.972 28.200 1.00 3.00 ATOM 334 CA ARG 84 -26.839 -16.853 27.482 1.00 3.00 ATOM 335 C ARG 84 -27.915 -15.948 26.896 1.00 3.00 ATOM 336 O ARG 84 -28.841 -16.420 26.236 1.00 3.00 ATOM 337 N ASP 85 -27.788 -14.649 27.139 1.00 3.00 ATOM 338 CA ASP 85 -28.758 -13.702 26.623 1.00 3.00 ATOM 339 C ASP 85 -28.684 -13.573 25.114 1.00 3.00 ATOM 340 O ASP 85 -29.698 -13.376 24.450 1.00 3.00 ATOM 341 N ARG 86 -27.476 -13.681 24.570 1.00 3.00 ATOM 342 CA ARG 86 -27.303 -13.568 23.134 1.00 3.00 ATOM 343 C ARG 86 -28.006 -14.678 22.375 1.00 3.00 ATOM 344 O ARG 86 -28.750 -14.421 21.429 1.00 3.00 ATOM 345 N THR 87 -27.769 -15.917 22.795 1.00 3.00 ATOM 346 CA THR 87 -28.378 -17.074 22.152 1.00 3.00 ATOM 347 C THR 87 -29.887 -17.157 22.367 1.00 3.00 ATOM 348 O THR 87 -30.565 -17.955 21.719 1.00 3.00 ATOM 349 N LEU 88 -30.415 -16.335 23.270 1.00 3.00 ATOM 350 CA LEU 88 -31.851 -16.340 23.532 1.00 3.00 ATOM 351 C LEU 88 -32.558 -15.464 22.502 1.00 3.00 ATOM 352 O LEU 88 -33.683 -15.755 22.093 1.00 3.00 ATOM 353 N LYS 89 -31.893 -14.393 22.082 1.00 3.00 ATOM 354 CA LYS 89 -32.464 -13.485 21.092 1.00 3.00 ATOM 355 C LYS 89 -32.435 -14.124 19.710 1.00 3.00 ATOM 356 O LYS 89 -33.326 -13.901 18.890 1.00 3.00 ATOM 357 N ASN 90 -31.398 -14.912 19.451 1.00 3.00 ATOM 358 CA ASN 90 -31.283 -15.601 18.175 1.00 3.00 ATOM 359 C ASN 90 -32.406 -16.630 18.098 1.00 3.00 ATOM 360 O ASN 90 -32.998 -16.841 17.041 1.00 3.00 ATOM 361 N ILE 91 -32.709 -17.253 19.234 1.00 3.00 ATOM 362 CA ILE 91 -33.779 -18.235 19.266 1.00 3.00 ATOM 363 C ILE 91 -35.100 -17.581 18.915 1.00 3.00 ATOM 364 O ILE 91 -35.937 -18.169 18.227 1.00 3.00 ATOM 365 N THR 92 -35.280 -16.351 19.384 1.00 3.00 ATOM 366 CA THR 92 -36.495 -15.586 19.125 1.00 3.00 ATOM 367 C THR 92 -36.668 -15.298 17.639 1.00 3.00 ATOM 368 O THR 92 -37.771 -15.379 17.104 1.00 3.00 ATOM 369 N GLU 93 -35.572 -14.950 16.977 1.00 3.00 ATOM 370 CA GLU 93 -35.615 -14.647 15.553 1.00 3.00 ATOM 371 C GLU 93 -35.925 -15.906 14.755 1.00 3.00 ATOM 372 O GLU 93 -36.661 -15.864 13.769 1.00 3.00 ATOM 373 N THR 94 -35.363 -17.027 15.195 1.00 3.00 ATOM 374 CA THR 94 -35.565 -18.301 14.522 1.00 3.00 ATOM 375 C THR 94 -36.899 -18.957 14.870 1.00 3.00 ATOM 376 O THR 94 -37.298 -19.939 14.244 1.00 3.00 ATOM 377 N CYS 95 -37.589 -18.411 15.867 1.00 3.00 ATOM 378 CA CYS 95 -38.864 -18.978 16.263 1.00 3.00 ATOM 379 C CYS 95 -38.670 -20.275 17.024 1.00 3.00 ATOM 380 O CYS 95 -39.547 -21.140 17.036 1.00 3.00 ATOM 381 N LYS 96 -37.509 -20.413 17.654 1.00 3.00 ATOM 382 CA LYS 96 -37.197 -21.606 18.426 1.00 3.00 ATOM 383 C LYS 96 -37.398 -21.319 19.910 1.00 3.00 ATOM 384 O LYS 96 -36.846 -20.357 20.444 1.00 3.00 ATOM 385 N ALA 97 -38.201 -22.151 20.594 1.00 3.00 ATOM 386 CA ALA 97 -38.456 -21.959 22.025 1.00 3.00 ATOM 387 C ALA 97 -37.154 -21.987 22.817 1.00 3.00 ATOM 388 O ALA 97 -36.258 -22.781 22.524 1.00 3.00 ATOM 389 N CYS 98 -37.051 -21.119 23.817 1.00 3.00 ATOM 390 CA CYS 98 -35.854 -21.056 24.639 1.00 3.00 ATOM 391 C CYS 98 -36.194 -21.097 26.125 1.00 3.00 ATOM 392 O CYS 98 -37.162 -20.478 26.570 1.00 3.00 ATOM 393 N ALA 99 -35.393 -21.838 26.884 1.00 3.00 ATOM 394 CA ALA 99 -35.579 -21.957 28.324 1.00 3.00 ATOM 395 C ALA 99 -34.326 -21.440 29.018 1.00 3.00 ATOM 396 O ALA 99 -33.274 -22.081 28.992 1.00 3.00 ATOM 397 N GLN 100 -34.444 -20.268 29.631 1.00 3.00 ATOM 398 CA GLN 100 -33.321 -19.646 30.319 1.00 3.00 ATOM 399 C GLN 100 -33.122 -20.220 31.715 1.00 3.00 ATOM 400 O GLN 100 -34.075 -20.366 32.479 1.00 3.00 ATOM 401 N VAL 101 -31.874 -20.542 32.041 1.00 3.00 ATOM 402 CA VAL 101 -31.543 -21.092 33.347 1.00 3.00 ATOM 403 C VAL 101 -31.312 -19.965 34.346 1.00 3.00 ATOM 404 O VAL 101 -30.288 -19.919 35.027 1.00 3.00 TER END ########################## # # # ACE results: # # # ########################## # WARNING! TARGET 787 atoms, MODEL 438 atoms, 394 common with TARGET Number of atoms possible to evaluate: 360 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 79.19 47.2 178 94.7 188 ARMSMC SECONDARY STRUCTURE . . 75.77 52.0 127 97.7 130 ARMSMC SURFACE . . . . . . . . 80.69 46.3 134 93.1 144 ARMSMC BURIED . . . . . . . . 74.44 50.0 44 100.0 44 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 88 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 84 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 62 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 67 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 67 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 48 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 48 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 20 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 18 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 14 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 10 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 13.58 (Number of atoms: 90) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 13.58 90 94.7 95 CRMSCA CRN = ALL/NP . . . . . 0.1509 CRMSCA SECONDARY STRUCTURE . . 13.34 64 98.5 65 CRMSCA SURFACE . . . . . . . . 14.27 68 93.2 73 CRMSCA BURIED . . . . . . . . 11.16 22 100.0 22 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 13.59 360 76.1 473 CRMSMC SECONDARY STRUCTURE . . 13.42 256 78.8 325 CRMSMC SURFACE . . . . . . . . 14.28 272 74.9 363 CRMSMC BURIED . . . . . . . . 11.20 88 80.0 110 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 407 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 343 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 287 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 315 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 92 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 13.59 360 45.7 787 CRMSALL SECONDARY STRUCTURE . . 13.42 256 46.8 547 CRMSALL SURFACE . . . . . . . . 14.28 272 44.8 607 CRMSALL BURIED . . . . . . . . 11.20 88 48.9 180 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.130 0.526 0.264 90 94.7 95 ERRCA SECONDARY STRUCTURE . . 8.696 0.501 0.251 64 98.5 65 ERRCA SURFACE . . . . . . . . 9.844 0.549 0.275 68 93.2 73 ERRCA BURIED . . . . . . . . 6.924 0.455 0.230 22 100.0 22 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.097 0.522 0.261 360 76.1 473 ERRMC SECONDARY STRUCTURE . . 8.722 0.498 0.249 256 78.8 325 ERRMC SURFACE . . . . . . . . 9.797 0.544 0.272 272 74.9 363 ERRMC BURIED . . . . . . . . 6.932 0.453 0.227 88 80.0 110 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 407 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 343 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 287 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 315 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 92 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.097 0.522 0.261 360 45.7 787 ERRALL SECONDARY STRUCTURE . . 8.722 0.498 0.249 256 46.8 547 ERRALL SURFACE . . . . . . . . 9.797 0.544 0.272 272 44.8 607 ERRALL BURIED . . . . . . . . 6.932 0.453 0.227 88 48.9 180 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 12 37 90 95 DISTCA CA (P) 0.00 0.00 2.11 12.63 38.95 95 DISTCA CA (RMS) 0.00 0.00 2.44 4.02 6.67 DISTCA ALL (N) 0 0 8 48 155 360 787 DISTALL ALL (P) 0.00 0.00 1.02 6.10 19.70 787 DISTALL ALL (RMS) 0.00 0.00 2.67 3.96 6.85 DISTALL END of the results output