####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 30 ( 246), selected 30 , name T0548TS322_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 30 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS322_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 17 - 40 4.49 10.91 LONGEST_CONTINUOUS_SEGMENT: 24 18 - 41 4.96 10.51 LCS_AVERAGE: 61.52 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 19 - 32 1.94 14.44 LCS_AVERAGE: 28.19 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 19 - 26 0.20 14.58 LCS_AVERAGE: 15.14 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 30 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 17 V 17 3 3 24 0 3 3 3 3 5 7 8 16 18 20 22 23 23 23 24 24 24 24 25 LCS_GDT T 18 T 18 3 9 24 3 4 6 8 9 12 14 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT D 19 D 19 8 14 24 8 9 10 11 12 12 14 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT I 20 I 20 8 14 24 8 9 10 11 12 12 14 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT K 21 K 21 8 14 24 8 9 10 11 12 12 14 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT D 22 D 22 8 14 24 8 9 10 11 12 12 14 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT L 23 L 23 8 14 24 8 9 10 11 12 12 14 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT T 24 T 24 8 14 24 8 9 10 11 12 12 14 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT K 25 K 25 8 14 24 8 9 10 11 12 12 14 15 16 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT L 26 L 26 8 14 24 8 9 10 11 12 12 14 15 16 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT G 27 G 27 5 14 24 2 4 6 9 10 12 14 15 15 16 17 17 18 22 23 23 24 24 24 25 LCS_GDT A 28 A 28 5 14 24 4 9 10 11 12 12 14 15 16 16 21 22 23 23 23 24 24 24 24 25 LCS_GDT I 29 I 29 5 14 24 4 6 10 11 12 12 14 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT Y 30 Y 30 5 14 24 4 4 9 11 12 12 14 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT D 31 D 31 5 14 24 4 4 6 9 12 12 14 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT K 32 K 32 4 14 24 3 3 5 9 12 12 14 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT T 33 T 33 4 4 24 3 3 5 6 7 12 14 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT K 34 K 34 4 7 24 3 3 4 4 6 7 7 13 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT K 35 K 35 3 7 24 3 3 6 8 9 10 13 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT Y 36 Y 36 5 7 24 3 5 6 8 9 10 13 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT W 37 W 37 5 7 24 4 5 5 8 9 10 13 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT V 38 V 38 5 7 24 4 5 6 8 9 10 11 15 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT Y 39 Y 39 5 7 24 4 5 6 8 9 10 13 16 18 19 21 22 23 23 23 24 24 24 24 25 LCS_GDT Q 40 Q 40 5 7 24 4 5 6 8 9 10 11 13 18 19 20 22 23 23 23 24 24 24 24 25 LCS_GDT G 41 G 41 4 6 24 3 4 4 4 6 6 7 8 9 10 13 15 19 20 21 24 24 24 24 25 LCS_GDT K 42 K 42 4 6 10 3 4 4 4 6 6 7 8 9 10 11 14 16 16 17 18 19 19 22 25 LCS_GDT P 43 P 43 4 6 9 3 4 4 4 6 6 7 8 9 10 11 14 16 16 16 18 18 19 20 22 LCS_GDT V 44 V 44 4 6 9 3 4 4 4 6 6 7 7 7 8 9 10 10 11 15 17 17 19 20 22 LCS_GDT M 45 M 45 4 6 9 3 4 4 4 6 6 7 7 8 9 9 11 13 13 16 17 17 19 20 22 LCS_GDT P 46 P 46 4 5 9 3 4 4 4 5 5 7 7 7 8 9 9 9 9 11 15 15 19 19 19 LCS_AVERAGE LCS_A: 34.95 ( 15.14 28.19 61.52 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 9 10 11 12 12 14 16 18 19 21 22 23 23 23 24 24 24 24 25 GDT PERCENT_AT 22.86 25.71 28.57 31.43 34.29 34.29 40.00 45.71 51.43 54.29 60.00 62.86 65.71 65.71 65.71 68.57 68.57 68.57 68.57 71.43 GDT RMS_LOCAL 0.20 0.34 0.64 0.94 1.34 1.34 1.94 3.19 3.35 3.48 3.86 3.99 4.13 4.13 4.13 4.68 4.49 4.49 4.49 5.02 GDT RMS_ALL_AT 14.58 14.62 14.45 14.32 14.20 14.20 14.44 10.29 10.11 10.17 11.09 10.51 10.65 10.65 10.65 10.23 10.91 10.91 10.91 10.44 # Checking swapping # possible swapping detected: D 19 D 19 # possible swapping detected: D 22 D 22 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 17 V 17 6.428 0 0.581 1.424 8.147 20.476 16.735 LGA T 18 T 18 1.823 0 0.608 0.574 5.744 59.881 50.612 LGA D 19 D 19 4.255 0 0.565 1.225 10.070 54.167 29.762 LGA I 20 I 20 2.287 0 0.045 1.347 5.077 67.262 51.726 LGA K 21 K 21 2.990 0 0.067 0.896 5.785 57.262 41.270 LGA D 22 D 22 1.257 0 0.065 0.764 3.528 67.738 70.714 LGA L 23 L 23 3.023 0 0.077 1.198 6.134 49.048 45.476 LGA T 24 T 24 3.873 0 0.032 1.042 6.580 35.000 36.871 LGA K 25 K 25 6.307 0 0.191 0.633 8.192 15.357 12.751 LGA L 26 L 26 7.218 0 0.589 1.112 9.828 7.619 9.762 LGA G 27 G 27 10.970 0 0.508 0.508 10.970 0.476 0.476 LGA A 28 A 28 7.020 0 0.065 0.087 7.795 18.690 16.952 LGA I 29 I 29 3.720 0 0.075 1.315 5.052 39.167 41.548 LGA Y 30 Y 30 2.833 0 0.065 0.319 5.957 62.976 44.841 LGA D 31 D 31 3.568 0 0.047 0.502 4.212 43.452 42.619 LGA K 32 K 32 3.379 0 0.130 1.028 11.237 51.786 32.011 LGA T 33 T 33 3.206 0 0.626 0.834 4.940 49.405 43.333 LGA K 34 K 34 5.209 0 0.673 0.900 17.077 42.976 20.265 LGA K 35 K 35 3.492 0 0.639 0.920 12.298 45.476 24.550 LGA Y 36 Y 36 3.258 0 0.069 1.117 10.390 45.119 28.849 LGA W 37 W 37 3.469 0 0.029 1.201 10.677 50.000 22.857 LGA V 38 V 38 4.519 0 0.062 0.135 7.433 38.810 27.483 LGA Y 39 Y 39 3.144 0 0.105 0.268 5.975 37.976 44.524 LGA Q 40 Q 40 5.685 0 0.508 1.394 7.482 18.214 42.222 LGA G 41 G 41 11.953 0 0.654 0.654 15.681 0.119 0.119 LGA K 42 K 42 16.909 0 0.097 0.572 18.085 0.000 0.000 LGA P 43 P 43 21.032 0 0.275 0.396 23.699 0.000 0.000 LGA V 44 V 44 21.732 0 0.107 1.006 22.742 0.000 0.000 LGA M 45 M 45 25.441 0 0.590 1.088 30.859 0.000 0.000 LGA P 46 P 46 25.330 0 0.591 0.585 28.822 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 30 120 120 100.00 246 246 100.00 35 SUMMARY(RMSD_GDC): 8.945 8.878 9.440 27.956 22.809 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 30 35 4.0 16 3.19 42.857 40.093 0.487 LGA_LOCAL RMSD: 3.185 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.291 Number of assigned atoms: 30 Std_ASGN_ATOMS RMSD: 8.945 Standard rmsd on all 30 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.495066 * X + 0.079700 * Y + 0.865192 * Z + -103.150642 Y_new = 0.592988 * X + 0.696817 * Y + -0.403499 * Z + -40.710430 Z_new = -0.635039 * X + 0.712807 * Y + 0.297710 * Z + 15.659084 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.875153 0.688059 1.175161 [DEG: 50.1426 39.4229 67.3317 ] ZXZ: 1.134413 1.268504 -0.727764 [DEG: 64.9971 72.6799 -41.6978 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS322_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS322_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 30 35 4.0 16 3.19 40.093 8.94 REMARK ---------------------------------------------------------- MOLECULE T0548TS322_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 137 N VAL 17 -31.348 -11.982 34.956 1.00 99.99 N ATOM 138 CA VAL 17 -32.568 -11.744 35.704 1.00 99.99 C ATOM 139 C VAL 17 -33.798 -12.186 34.957 1.00 99.99 C ATOM 140 O VAL 17 -33.739 -12.275 33.721 1.00 99.99 O ATOM 141 CB VAL 17 -32.733 -10.346 36.291 1.00 99.99 C ATOM 142 CG1 VAL 17 -31.729 -10.193 37.491 1.00 99.99 C ATOM 143 CG2 VAL 17 -32.650 -9.197 35.234 1.00 99.99 C ATOM 144 N THR 18 -34.861 -12.675 35.647 1.00 99.99 N ATOM 145 CA THR 18 -36.065 -13.345 35.034 1.00 99.99 C ATOM 146 C THR 18 -37.118 -12.220 34.770 1.00 99.99 C ATOM 147 O THR 18 -37.458 -11.453 35.690 1.00 99.99 O ATOM 148 CB THR 18 -36.616 -14.449 35.982 1.00 99.99 C ATOM 149 OG1 THR 18 -35.583 -15.250 36.425 1.00 99.99 O ATOM 150 CG2 THR 18 -37.717 -15.246 35.400 1.00 99.99 C ATOM 151 N ASP 19 -37.736 -12.048 33.580 1.00 99.99 N ATOM 152 CA ASP 19 -38.649 -10.949 33.239 1.00 99.99 C ATOM 153 C ASP 19 -39.724 -11.355 32.335 1.00 99.99 C ATOM 154 O ASP 19 -39.517 -12.062 31.372 1.00 99.99 O ATOM 155 CB ASP 19 -37.756 -9.912 32.606 1.00 99.99 C ATOM 156 CG ASP 19 -38.348 -8.534 32.372 1.00 99.99 C ATOM 157 OD1 ASP 19 -39.540 -8.428 31.982 1.00 99.99 O ATOM 158 OD2 ASP 19 -37.638 -7.552 32.628 1.00 99.99 O ATOM 159 N ILE 20 -40.980 -10.994 32.707 1.00 99.99 N ATOM 160 CA ILE 20 -42.200 -11.383 31.943 1.00 99.99 C ATOM 161 C ILE 20 -42.103 -11.094 30.409 1.00 99.99 C ATOM 162 O ILE 20 -42.540 -11.930 29.573 1.00 99.99 O ATOM 163 CB ILE 20 -43.422 -10.484 32.454 1.00 99.99 C ATOM 164 CG1 ILE 20 -44.714 -10.990 31.853 1.00 99.99 C ATOM 165 CG2 ILE 20 -43.314 -8.968 32.199 1.00 99.99 C ATOM 166 CD1 ILE 20 -45.158 -12.429 32.090 1.00 99.99 C ATOM 167 N LYS 21 -41.458 -9.967 30.034 1.00 99.99 N ATOM 168 CA LYS 21 -41.149 -9.685 28.680 1.00 99.99 C ATOM 169 C LYS 21 -40.411 -10.803 27.953 1.00 99.99 C ATOM 170 O LYS 21 -40.889 -11.346 26.966 1.00 99.99 O ATOM 171 CB LYS 21 -40.470 -8.251 28.584 1.00 99.99 C ATOM 172 CG LYS 21 -40.271 -7.772 27.121 1.00 99.99 C ATOM 173 CD LYS 21 -39.385 -6.500 27.026 1.00 99.99 C ATOM 174 CE LYS 21 -40.053 -5.163 27.281 1.00 99.99 C ATOM 175 NZ LYS 21 -39.378 -4.041 26.625 1.00 99.99 N ATOM 176 N ASP 22 -39.301 -11.187 28.562 1.00 99.99 N ATOM 177 CA ASP 22 -38.412 -12.223 28.052 1.00 99.99 C ATOM 178 C ASP 22 -39.062 -13.641 28.288 1.00 99.99 C ATOM 179 O ASP 22 -39.037 -14.474 27.379 1.00 99.99 O ATOM 180 CB ASP 22 -37.116 -12.086 28.865 1.00 99.99 C ATOM 181 CG ASP 22 -35.872 -12.732 28.190 1.00 99.99 C ATOM 182 OD1 ASP 22 -35.102 -13.498 28.815 1.00 99.99 O ATOM 183 OD2 ASP 22 -35.622 -12.357 26.996 1.00 99.99 O ATOM 184 N LEU 23 -39.644 -13.954 29.438 1.00 99.99 N ATOM 185 CA LEU 23 -40.627 -15.063 29.552 1.00 99.99 C ATOM 186 C LEU 23 -41.732 -15.222 28.465 1.00 99.99 C ATOM 187 O LEU 23 -41.748 -16.246 27.846 1.00 99.99 O ATOM 188 CB LEU 23 -41.202 -14.916 30.972 1.00 99.99 C ATOM 189 CG LEU 23 -41.838 -16.153 31.613 1.00 99.99 C ATOM 190 CD1 LEU 23 -40.889 -17.079 32.329 1.00 99.99 C ATOM 191 CD2 LEU 23 -42.942 -15.831 32.685 1.00 99.99 C ATOM 192 N THR 24 -42.561 -14.216 28.224 1.00 99.99 N ATOM 193 CA THR 24 -43.603 -14.299 27.228 1.00 99.99 C ATOM 194 C THR 24 -42.950 -14.631 25.816 1.00 99.99 C ATOM 195 O THR 24 -43.484 -15.458 25.069 1.00 99.99 O ATOM 196 CB THR 24 -44.337 -12.972 27.148 1.00 99.99 C ATOM 197 OG1 THR 24 -44.862 -12.689 28.422 1.00 99.99 O ATOM 198 CG2 THR 24 -45.542 -13.068 26.314 1.00 99.99 C ATOM 199 N LYS 25 -41.828 -14.014 25.456 1.00 99.99 N ATOM 200 CA LYS 25 -40.985 -14.163 24.210 1.00 99.99 C ATOM 201 C LYS 25 -40.425 -15.556 24.050 1.00 99.99 C ATOM 202 O LYS 25 -40.706 -16.215 23.017 1.00 99.99 O ATOM 203 CB LYS 25 -39.963 -13.025 23.988 1.00 99.99 C ATOM 204 CG LYS 25 -39.180 -13.059 22.683 1.00 99.99 C ATOM 205 CD LYS 25 -38.537 -11.671 22.402 1.00 99.99 C ATOM 206 CE LYS 25 -37.547 -11.698 21.259 1.00 99.99 C ATOM 207 NZ LYS 25 -36.901 -10.368 21.136 1.00 99.99 N ATOM 208 N LEU 26 -39.667 -16.036 25.027 1.00 99.99 N ATOM 209 CA LEU 26 -39.215 -17.368 25.065 1.00 99.99 C ATOM 210 C LEU 26 -39.149 -17.912 26.485 1.00 99.99 C ATOM 211 O LEU 26 -38.303 -17.493 27.264 1.00 99.99 O ATOM 212 CB LEU 26 -37.822 -17.520 24.357 1.00 99.99 C ATOM 213 CG LEU 26 -37.539 -19.009 24.076 1.00 99.99 C ATOM 214 CD1 LEU 26 -36.851 -19.203 22.717 1.00 99.99 C ATOM 215 CD2 LEU 26 -36.681 -19.562 25.210 1.00 99.99 C ATOM 216 N GLY 27 -40.076 -18.748 26.818 1.00 99.99 N ATOM 217 CA GLY 27 -40.268 -19.392 28.100 1.00 99.99 C ATOM 218 C GLY 27 -41.643 -19.915 28.250 1.00 99.99 C ATOM 219 O GLY 27 -41.902 -21.095 27.957 1.00 99.99 O ATOM 220 N ALA 28 -42.570 -19.034 28.688 1.00 99.99 N ATOM 221 CA ALA 28 -43.918 -19.527 29.160 1.00 99.99 C ATOM 222 C ALA 28 -45.063 -18.510 28.988 1.00 99.99 C ATOM 223 O ALA 28 -44.845 -17.279 28.826 1.00 99.99 O ATOM 224 CB ALA 28 -43.683 -20.047 30.585 1.00 99.99 C ATOM 225 N ILE 29 -46.247 -19.086 29.021 1.00 99.99 N ATOM 226 CA ILE 29 -47.542 -18.406 28.970 1.00 99.99 C ATOM 227 C ILE 29 -48.521 -19.131 29.976 1.00 99.99 C ATOM 228 O ILE 29 -48.191 -20.218 30.501 1.00 99.99 O ATOM 229 CB ILE 29 -47.998 -18.215 27.473 1.00 99.99 C ATOM 230 CG1 ILE 29 -48.590 -16.865 27.114 1.00 99.99 C ATOM 231 CG2 ILE 29 -48.977 -19.385 27.039 1.00 99.99 C ATOM 232 CD1 ILE 29 -49.988 -16.493 27.697 1.00 99.99 C ATOM 233 N TYR 30 -49.608 -18.419 30.396 1.00 99.99 N ATOM 234 CA TYR 30 -50.445 -18.821 31.554 1.00 99.99 C ATOM 235 C TYR 30 -51.928 -18.977 31.171 1.00 99.99 C ATOM 236 O TYR 30 -52.566 -17.988 30.847 1.00 99.99 O ATOM 237 CB TYR 30 -50.294 -17.954 32.893 1.00 99.99 C ATOM 238 CG TYR 30 -51.120 -18.463 34.069 1.00 99.99 C ATOM 239 CD1 TYR 30 -50.480 -19.405 34.909 1.00 99.99 C ATOM 240 CD2 TYR 30 -52.438 -17.957 34.462 1.00 99.99 C ATOM 241 CE1 TYR 30 -51.129 -19.841 36.049 1.00 99.99 C ATOM 242 CE2 TYR 30 -53.023 -18.400 35.675 1.00 99.99 C ATOM 243 CZ TYR 30 -52.440 -19.413 36.430 1.00 99.99 C ATOM 244 OH TYR 30 -53.006 -19.801 37.640 1.00 99.99 H ATOM 245 N ASP 31 -52.555 -20.184 31.202 1.00 99.99 N ATOM 246 CA ASP 31 -53.930 -20.359 30.893 1.00 99.99 C ATOM 247 C ASP 31 -54.442 -21.436 31.836 1.00 99.99 C ATOM 248 O ASP 31 -54.370 -22.585 31.573 1.00 99.99 O ATOM 249 CB ASP 31 -53.994 -20.840 29.416 1.00 99.99 C ATOM 250 CG ASP 31 -55.302 -21.554 28.925 1.00 99.99 C ATOM 251 OD1 ASP 31 -55.187 -22.623 28.250 1.00 99.99 O ATOM 252 OD2 ASP 31 -56.402 -21.008 29.145 1.00 99.99 O ATOM 253 N LYS 32 -54.960 -20.999 33.000 1.00 99.99 N ATOM 254 CA LYS 32 -55.437 -21.779 34.163 1.00 99.99 C ATOM 255 C LYS 32 -54.284 -22.554 34.820 1.00 99.99 C ATOM 256 O LYS 32 -54.340 -22.771 36.062 1.00 99.99 O ATOM 257 CB LYS 32 -56.638 -22.691 33.819 1.00 99.99 C ATOM 258 CG LYS 32 -57.794 -22.018 33.008 1.00 99.99 C ATOM 259 CD LYS 32 -58.853 -23.126 32.626 1.00 99.99 C ATOM 260 CE LYS 32 -59.868 -23.422 33.763 1.00 99.99 C ATOM 261 NZ LYS 32 -60.737 -24.563 33.397 1.00 99.99 N ATOM 262 N THR 33 -53.188 -22.899 34.130 1.00 99.99 N ATOM 263 CA THR 33 -51.837 -23.304 34.574 1.00 99.99 C ATOM 264 C THR 33 -50.675 -22.784 33.693 1.00 99.99 C ATOM 265 O THR 33 -50.890 -22.336 32.580 1.00 99.99 O ATOM 266 CB THR 33 -51.601 -24.862 34.740 1.00 99.99 C ATOM 267 OG1 THR 33 -51.783 -25.481 33.528 1.00 99.99 O ATOM 268 CG2 THR 33 -52.451 -25.384 35.943 1.00 99.99 C ATOM 269 N LYS 34 -49.464 -22.745 34.256 1.00 99.99 N ATOM 270 CA LYS 34 -48.216 -22.413 33.496 1.00 99.99 C ATOM 271 C LYS 34 -48.009 -23.501 32.365 1.00 99.99 C ATOM 272 O LYS 34 -48.066 -24.679 32.743 1.00 99.99 O ATOM 273 CB LYS 34 -46.907 -22.326 34.356 1.00 99.99 C ATOM 274 CG LYS 34 -46.938 -21.284 35.553 1.00 99.99 C ATOM 275 CD LYS 34 -45.924 -21.615 36.611 1.00 99.99 C ATOM 276 CE LYS 34 -45.490 -20.527 37.655 1.00 99.99 C ATOM 277 NZ LYS 34 -44.512 -20.933 38.736 1.00 99.99 N ATOM 278 N LYS 35 -47.695 -23.077 31.122 1.00 99.99 N ATOM 279 CA LYS 35 -47.339 -23.873 29.954 1.00 99.99 C ATOM 280 C LYS 35 -46.226 -23.396 29.006 1.00 99.99 C ATOM 281 O LYS 35 -46.181 -22.175 28.700 1.00 99.99 O ATOM 282 CB LYS 35 -48.632 -24.309 29.311 1.00 99.99 C ATOM 283 CG LYS 35 -49.371 -23.076 28.730 1.00 99.99 C ATOM 284 CD LYS 35 -50.691 -23.663 28.182 1.00 99.99 C ATOM 285 CE LYS 35 -50.516 -24.572 26.924 1.00 99.99 C ATOM 286 NZ LYS 35 -51.887 -24.820 26.261 1.00 99.99 N ATOM 287 N TYR 36 -45.299 -24.273 28.600 1.00 99.99 N ATOM 288 CA TYR 36 -44.049 -23.794 27.801 1.00 99.99 C ATOM 289 C TYR 36 -44.489 -23.141 26.474 1.00 99.99 C ATOM 290 O TYR 36 -45.450 -23.613 25.853 1.00 99.99 O ATOM 291 CB TYR 36 -43.087 -25.008 27.606 1.00 99.99 C ATOM 292 CG TYR 36 -41.675 -24.641 27.120 1.00 99.99 C ATOM 293 CD1 TYR 36 -41.485 -24.751 25.735 1.00 99.99 C ATOM 294 CD2 TYR 36 -40.531 -24.281 27.916 1.00 99.99 C ATOM 295 CE1 TYR 36 -40.272 -24.566 25.123 1.00 99.99 C ATOM 296 CE2 TYR 36 -39.271 -24.042 27.303 1.00 99.99 C ATOM 297 CZ TYR 36 -39.131 -24.191 25.899 1.00 99.99 C ATOM 298 OH TYR 36 -37.898 -23.986 25.311 1.00 99.99 H ATOM 299 N TRP 37 -43.901 -22.012 26.081 1.00 99.99 N ATOM 300 CA TRP 37 -44.373 -21.157 25.020 1.00 99.99 C ATOM 301 C TRP 37 -43.202 -20.420 24.354 1.00 99.99 C ATOM 302 O TRP 37 -42.228 -20.206 25.017 1.00 99.99 O ATOM 303 CB TRP 37 -45.423 -20.187 25.572 1.00 99.99 C ATOM 304 CG TRP 37 -46.076 -19.362 24.520 1.00 99.99 C ATOM 305 CD1 TRP 37 -45.761 -18.129 24.260 1.00 99.99 C ATOM 306 CD2 TRP 37 -47.199 -19.674 23.676 1.00 99.99 C ATOM 307 NE1 TRP 37 -46.504 -17.619 23.220 1.00 99.99 N ATOM 308 CE2 TRP 37 -47.455 -18.539 22.847 1.00 99.99 C ATOM 309 CE3 TRP 37 -48.036 -20.825 23.514 1.00 99.99 C ATOM 310 CZ2 TRP 37 -48.481 -18.596 21.868 1.00 99.99 C ATOM 311 CZ3 TRP 37 -49.024 -20.805 22.491 1.00 99.99 C ATOM 312 CH2 TRP 37 -49.232 -19.741 21.644 1.00 99.99 H ATOM 313 N VAL 38 -43.265 -20.148 23.079 1.00 99.99 N ATOM 314 CA VAL 38 -42.219 -19.534 22.265 1.00 99.99 C ATOM 315 C VAL 38 -42.840 -18.598 21.141 1.00 99.99 C ATOM 316 O VAL 38 -43.735 -18.974 20.423 1.00 99.99 O ATOM 317 CB VAL 38 -41.369 -20.628 21.622 1.00 99.99 C ATOM 318 CG1 VAL 38 -40.352 -20.018 20.665 1.00 99.99 C ATOM 319 CG2 VAL 38 -40.616 -21.553 22.673 1.00 99.99 C ATOM 320 N TYR 39 -42.445 -17.379 20.953 1.00 99.99 N ATOM 321 CA TYR 39 -43.006 -16.363 20.047 1.00 99.99 C ATOM 322 C TYR 39 -41.848 -15.724 19.324 1.00 99.99 C ATOM 323 O TYR 39 -40.890 -15.055 19.760 1.00 99.99 O ATOM 324 CB TYR 39 -43.973 -15.403 20.715 1.00 99.99 C ATOM 325 CG TYR 39 -44.552 -14.505 19.651 1.00 99.99 C ATOM 326 CD1 TYR 39 -44.040 -13.250 19.249 1.00 99.99 C ATOM 327 CD2 TYR 39 -45.723 -15.031 19.020 1.00 99.99 C ATOM 328 CE1 TYR 39 -44.594 -12.672 18.068 1.00 99.99 C ATOM 329 CE2 TYR 39 -46.360 -14.312 18.002 1.00 99.99 C ATOM 330 CZ TYR 39 -45.756 -13.157 17.443 1.00 99.99 C ATOM 331 OH TYR 39 -46.462 -12.400 16.541 1.00 99.99 H ATOM 332 N GLN 40 -41.910 -15.761 17.944 1.00 99.99 N ATOM 333 CA GLN 40 -40.939 -15.468 16.909 1.00 99.99 C ATOM 334 C GLN 40 -41.595 -14.720 15.743 1.00 99.99 C ATOM 335 O GLN 40 -42.811 -14.980 15.479 1.00 99.99 O ATOM 336 CB GLN 40 -40.215 -16.724 16.410 1.00 99.99 C ATOM 337 CG GLN 40 -40.992 -17.629 15.454 1.00 99.99 C ATOM 338 CD GLN 40 -42.053 -18.640 16.134 1.00 99.99 C ATOM 339 OE1 GLN 40 -41.741 -19.349 17.118 1.00 99.99 O ATOM 340 NE2 GLN 40 -43.319 -18.678 15.659 1.00 99.99 N ATOM 341 N GLY 41 -40.760 -13.951 15.020 1.00 99.99 N ATOM 342 CA GLY 41 -41.133 -13.209 13.851 1.00 99.99 C ATOM 343 C GLY 41 -40.172 -12.117 13.301 1.00 99.99 C ATOM 344 O GLY 41 -39.088 -11.901 13.881 1.00 99.99 O ATOM 345 N LYS 42 -40.457 -11.587 12.101 1.00 99.99 N ATOM 346 CA LYS 42 -39.703 -10.504 11.442 1.00 99.99 C ATOM 347 C LYS 42 -40.141 -9.155 12.165 1.00 99.99 C ATOM 348 O LYS 42 -41.354 -8.895 12.276 1.00 99.99 O ATOM 349 CB LYS 42 -40.151 -10.545 10.000 1.00 99.99 C ATOM 350 CG LYS 42 -39.572 -11.623 9.110 1.00 99.99 C ATOM 351 CD LYS 42 -40.028 -11.671 7.671 1.00 99.99 C ATOM 352 CE LYS 42 -39.108 -12.639 6.956 1.00 99.99 C ATOM 353 NZ LYS 42 -39.310 -12.547 5.493 1.00 99.99 N ATOM 354 N PRO 43 -39.156 -8.288 12.558 1.00 99.99 N ATOM 355 CA PRO 43 -39.422 -7.064 13.239 1.00 99.99 C ATOM 356 C PRO 43 -40.169 -5.953 12.352 1.00 99.99 C ATOM 357 O PRO 43 -39.542 -5.162 11.669 1.00 99.99 O ATOM 358 CB PRO 43 -38.045 -6.569 13.789 1.00 99.99 C ATOM 359 CG PRO 43 -37.083 -7.107 12.715 1.00 99.99 C ATOM 360 CD PRO 43 -37.736 -8.385 12.276 1.00 99.99 C ATOM 361 N VAL 44 -41.480 -5.936 12.451 1.00 99.99 N ATOM 362 CA VAL 44 -42.478 -4.994 11.783 1.00 99.99 C ATOM 363 C VAL 44 -43.517 -4.512 12.864 1.00 99.99 C ATOM 364 O VAL 44 -43.758 -5.223 13.861 1.00 99.99 O ATOM 365 CB VAL 44 -43.138 -5.611 10.491 1.00 99.99 C ATOM 366 CG1 VAL 44 -42.240 -5.490 9.303 1.00 99.99 C ATOM 367 CG2 VAL 44 -43.695 -7.039 10.646 1.00 99.99 C ATOM 368 N MET 45 -44.047 -3.360 12.649 1.00 99.99 N ATOM 369 CA MET 45 -45.125 -2.676 13.386 1.00 99.99 C ATOM 370 C MET 45 -46.304 -3.606 13.748 1.00 99.99 C ATOM 371 O MET 45 -46.514 -3.726 14.987 1.00 99.99 O ATOM 372 CB MET 45 -45.527 -1.283 12.853 1.00 99.99 C ATOM 373 CG MET 45 -44.372 -0.331 12.487 1.00 99.99 C ATOM 374 SD MET 45 -43.685 -0.428 10.860 1.00 99.99 S ATOM 375 CE MET 45 -41.983 0.198 11.164 1.00 99.99 C ATOM 376 N PRO 46 -47.067 -4.233 12.831 1.00 99.99 N ATOM 377 CA PRO 46 -48.117 -5.202 13.184 1.00 99.99 C ATOM 378 C PRO 46 -47.709 -6.253 14.204 1.00 99.99 C ATOM 379 O PRO 46 -48.430 -6.607 15.101 1.00 99.99 O ATOM 380 CB PRO 46 -48.712 -5.741 11.937 1.00 99.99 C ATOM 381 CG PRO 46 -48.425 -4.682 10.884 1.00 99.99 C ATOM 382 CD PRO 46 -47.042 -4.131 11.334 1.00 99.99 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 246 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 81.68 44.8 58 85.3 68 ARMSMC SECONDARY STRUCTURE . . 64.76 63.6 33 97.1 34 ARMSMC SURFACE . . . . . . . . 88.13 39.6 48 85.7 56 ARMSMC BURIED . . . . . . . . 37.66 70.0 10 83.3 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.17 29.6 27 84.4 32 ARMSSC1 RELIABLE SIDE CHAINS . 86.09 29.2 24 82.8 29 ARMSSC1 SECONDARY STRUCTURE . . 86.29 35.3 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 87.96 30.4 23 85.2 27 ARMSSC1 BURIED . . . . . . . . 82.51 25.0 4 80.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.96 38.1 21 84.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 74.73 42.1 19 90.5 21 ARMSSC2 SECONDARY STRUCTURE . . 81.50 38.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 66.67 42.1 19 86.4 22 ARMSSC2 BURIED . . . . . . . . 135.48 0.0 2 66.7 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.73 25.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 87.61 28.6 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 107.16 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 82.73 25.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 63.21 83.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 63.21 83.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 108.25 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 63.21 83.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.94 (Number of atoms: 30) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.94 30 85.7 35 CRMSCA CRN = ALL/NP . . . . . 0.2982 CRMSCA SECONDARY STRUCTURE . . 5.75 17 100.0 17 CRMSCA SURFACE . . . . . . . . 9.04 25 86.2 29 CRMSCA BURIED . . . . . . . . 8.45 5 83.3 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.99 148 85.5 173 CRMSMC SECONDARY STRUCTURE . . 6.06 85 100.0 85 CRMSMC SURFACE . . . . . . . . 9.07 123 86.0 143 CRMSMC BURIED . . . . . . . . 8.57 25 83.3 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.12 126 80.8 156 CRMSSC RELIABLE SIDE CHAINS . 10.05 114 83.8 136 CRMSSC SECONDARY STRUCTURE . . 7.84 84 100.0 84 CRMSSC SURFACE . . . . . . . . 10.29 105 82.7 127 CRMSSC BURIED . . . . . . . . 9.19 21 72.4 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.53 246 83.1 296 CRMSALL SECONDARY STRUCTURE . . 7.09 152 100.0 152 CRMSALL SURFACE . . . . . . . . 9.67 205 84.4 243 CRMSALL BURIED . . . . . . . . 8.82 41 77.4 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.123 0.857 0.868 30 85.7 35 ERRCA SECONDARY STRUCTURE . . 94.625 0.899 0.904 17 100.0 17 ERRCA SURFACE . . . . . . . . 92.030 0.855 0.867 25 86.2 29 ERRCA BURIED . . . . . . . . 92.587 0.865 0.875 5 83.3 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.088 0.856 0.868 148 85.5 173 ERRMC SECONDARY STRUCTURE . . 94.417 0.895 0.901 85 100.0 85 ERRMC SURFACE . . . . . . . . 92.004 0.855 0.867 123 86.0 143 ERRMC BURIED . . . . . . . . 92.503 0.863 0.874 25 83.3 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 90.818 0.835 0.849 126 80.8 156 ERRSC RELIABLE SIDE CHAINS . 90.926 0.837 0.851 114 83.8 136 ERRSC SECONDARY STRUCTURE . . 92.566 0.863 0.872 84 100.0 84 ERRSC SURFACE . . . . . . . . 90.693 0.833 0.848 105 82.7 127 ERRSC BURIED . . . . . . . . 91.440 0.844 0.857 21 72.4 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.480 0.846 0.859 246 83.1 296 ERRALL SECONDARY STRUCTURE . . 93.427 0.878 0.886 152 100.0 152 ERRALL SURFACE . . . . . . . . 91.367 0.844 0.857 205 84.4 243 ERRALL BURIED . . . . . . . . 92.042 0.855 0.866 41 77.4 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 11 24 30 35 DISTCA CA (P) 0.00 0.00 0.00 31.43 68.57 35 DISTCA CA (RMS) 0.00 0.00 0.00 4.24 6.46 DISTCA ALL (N) 0 0 5 55 177 246 296 DISTALL ALL (P) 0.00 0.00 1.69 18.58 59.80 296 DISTALL ALL (RMS) 0.00 0.00 2.76 3.99 6.64 DISTALL END of the results output