####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 256), selected 31 , name T0548TS319_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 31 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS319_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 16 - 31 4.65 14.98 LONGEST_CONTINUOUS_SEGMENT: 16 31 - 46 4.70 15.45 LCS_AVERAGE: 45.71 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 35 - 45 2.00 16.40 LCS_AVERAGE: 25.62 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 17 - 24 0.76 16.86 LONGEST_CONTINUOUS_SEGMENT: 8 36 - 43 0.87 15.68 LCS_AVERAGE: 18.25 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 16 T 16 3 9 16 3 3 3 3 3 5 8 9 11 12 14 15 17 18 19 19 19 21 22 22 LCS_GDT V 17 V 17 8 9 16 4 7 8 8 8 8 8 9 11 14 15 15 17 18 19 19 20 21 23 24 LCS_GDT T 18 T 18 8 9 16 4 7 8 8 8 8 8 10 11 14 15 15 17 21 21 21 23 23 24 24 LCS_GDT D 19 D 19 8 9 16 4 7 8 8 8 10 10 11 12 14 16 18 19 21 21 22 23 24 24 25 LCS_GDT I 20 I 20 8 9 16 4 7 8 8 8 10 10 11 12 14 16 18 19 21 21 22 23 24 25 25 LCS_GDT K 21 K 21 8 9 16 4 7 8 8 8 8 8 10 11 12 14 18 18 21 21 22 23 24 25 25 LCS_GDT D 22 D 22 8 9 16 4 7 8 8 8 8 8 10 11 12 15 18 19 21 21 22 23 24 25 25 LCS_GDT L 23 L 23 8 9 16 4 7 8 8 8 8 8 9 10 12 16 18 19 21 21 22 23 24 25 25 LCS_GDT T 24 T 24 8 9 16 4 7 8 8 8 8 8 10 10 11 16 18 19 21 21 22 23 24 25 25 LCS_GDT K 25 K 25 3 9 16 3 3 5 5 5 7 8 10 10 11 16 18 19 21 21 22 23 24 25 25 LCS_GDT L 26 L 26 3 5 16 3 3 3 4 5 7 8 10 10 11 14 14 16 21 21 22 23 23 25 25 LCS_GDT G 27 G 27 3 5 16 3 3 3 4 4 7 8 10 10 14 16 18 19 21 21 22 23 24 25 25 LCS_GDT A 28 A 28 3 5 16 3 3 3 4 5 9 9 11 12 14 16 18 19 21 21 22 23 23 25 25 LCS_GDT I 29 I 29 6 8 16 4 5 6 6 8 10 10 11 12 14 16 18 19 21 21 22 23 24 25 25 LCS_GDT Y 30 Y 30 6 8 16 4 5 6 6 8 10 10 11 12 14 16 18 19 21 21 22 23 24 25 25 LCS_GDT D 31 D 31 6 8 16 4 5 6 6 8 10 10 11 12 14 16 18 19 21 21 22 23 24 25 25 LCS_GDT K 32 K 32 6 8 16 4 5 6 7 8 10 10 11 13 14 16 18 19 21 21 22 23 24 25 25 LCS_GDT T 33 T 33 6 8 16 3 5 6 7 8 10 10 11 13 14 16 18 19 21 21 22 23 24 25 25 LCS_GDT K 34 K 34 6 8 16 3 4 6 7 8 10 10 11 13 14 16 18 19 21 21 22 23 24 25 25 LCS_GDT K 35 K 35 5 11 16 3 4 6 7 9 10 11 12 13 14 16 18 19 21 21 22 23 24 25 25 LCS_GDT Y 36 Y 36 8 11 16 3 6 8 9 10 10 11 12 13 14 16 18 19 21 21 22 23 24 25 25 LCS_GDT W 37 W 37 8 11 16 3 6 8 9 10 10 11 12 13 13 13 16 18 20 21 22 23 24 25 25 LCS_GDT V 38 V 38 8 11 16 3 6 8 9 10 10 11 12 13 13 13 15 17 18 20 22 23 24 25 25 LCS_GDT Y 39 Y 39 8 11 16 3 6 8 9 10 10 11 12 13 13 13 15 17 18 19 22 23 24 25 25 LCS_GDT Q 40 Q 40 8 11 16 3 6 8 9 10 10 11 12 13 13 13 15 17 18 19 22 23 24 25 25 LCS_GDT G 41 G 41 8 11 16 3 6 8 9 10 10 11 12 13 13 13 14 17 18 20 22 23 24 25 25 LCS_GDT K 42 K 42 8 11 16 3 6 8 9 10 10 11 12 13 13 13 16 18 18 20 22 23 24 25 25 LCS_GDT P 43 P 43 8 11 16 3 6 8 9 10 10 11 12 13 13 14 16 19 20 21 22 23 24 25 25 LCS_GDT V 44 V 44 6 11 16 3 5 8 9 10 10 11 12 13 13 14 18 19 20 21 22 23 24 25 25 LCS_GDT M 45 M 45 5 11 16 3 4 6 9 10 10 11 12 12 14 16 18 19 21 21 22 23 23 24 25 LCS_GDT P 46 P 46 3 4 16 3 3 4 4 5 9 9 12 12 14 15 16 17 21 21 21 23 23 24 24 LCS_AVERAGE LCS_A: 29.86 ( 18.25 25.62 45.71 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 8 9 10 10 11 12 13 14 16 18 19 21 21 22 23 24 25 25 GDT PERCENT_AT 11.43 20.00 22.86 25.71 28.57 28.57 31.43 34.29 37.14 40.00 45.71 51.43 54.29 60.00 60.00 62.86 65.71 68.57 71.43 71.43 GDT RMS_LOCAL 0.28 0.68 0.76 1.04 1.46 1.46 2.00 2.38 3.16 3.50 4.59 4.84 5.02 5.33 5.27 5.45 5.73 6.22 6.52 6.51 GDT RMS_ALL_AT 16.41 16.88 16.86 15.65 15.80 15.80 16.40 16.36 14.98 10.34 9.76 9.77 9.24 10.45 9.14 9.26 9.01 9.01 9.18 8.81 # Checking swapping # possible swapping detected: D 22 D 22 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 16 T 16 22.416 0 0.135 0.267 23.200 0.000 0.000 LGA V 17 V 17 25.892 0 0.586 0.638 29.960 0.000 0.000 LGA T 18 T 18 22.629 0 0.070 1.011 24.328 0.000 0.000 LGA D 19 D 19 20.404 0 0.077 0.155 21.979 0.000 0.000 LGA I 20 I 20 21.169 0 0.040 0.055 23.777 0.000 0.000 LGA K 21 K 21 21.241 0 0.022 1.121 25.424 0.000 0.000 LGA D 22 D 22 19.328 0 0.038 1.103 20.221 0.000 0.000 LGA L 23 L 23 19.337 0 0.120 0.229 20.125 0.000 0.000 LGA T 24 T 24 19.979 0 0.258 0.326 23.735 0.000 0.000 LGA K 25 K 25 26.753 0 0.687 1.075 34.540 0.000 0.000 LGA L 26 L 26 26.305 0 0.671 1.486 28.883 0.000 0.000 LGA G 27 G 27 26.543 0 0.631 0.631 26.543 0.000 0.000 LGA A 28 A 28 25.041 0 0.077 0.073 25.742 0.000 0.000 LGA I 29 I 29 22.329 0 0.048 1.158 24.446 0.000 0.000 LGA Y 30 Y 30 16.040 0 0.254 1.399 18.664 0.000 0.000 LGA D 31 D 31 15.197 0 0.254 1.260 19.206 0.000 0.000 LGA K 32 K 32 11.346 0 0.143 1.249 13.421 1.905 0.847 LGA T 33 T 33 11.614 0 0.113 0.702 16.150 0.119 0.068 LGA K 34 K 34 9.568 0 0.672 0.982 19.941 10.000 4.444 LGA K 35 K 35 3.391 0 0.656 0.504 11.971 48.333 27.460 LGA Y 36 Y 36 0.846 0 0.153 1.534 9.842 85.952 51.627 LGA W 37 W 37 1.731 0 0.109 0.218 6.655 79.286 49.626 LGA V 38 V 38 1.556 0 0.017 0.135 1.887 77.143 76.531 LGA Y 39 Y 39 1.213 0 0.158 0.152 2.459 75.119 77.222 LGA Q 40 Q 40 1.395 0 0.281 1.258 8.565 83.929 48.307 LGA G 41 G 41 3.091 0 0.175 0.175 4.173 52.500 52.500 LGA K 42 K 42 3.015 0 0.096 0.619 10.311 65.238 39.841 LGA P 43 P 43 1.295 0 0.018 0.306 3.223 73.095 67.687 LGA V 44 V 44 2.259 0 0.136 0.133 3.787 65.119 60.816 LGA M 45 M 45 2.944 0 0.268 0.580 8.616 59.048 37.381 LGA P 46 P 46 3.612 0 0.715 0.657 5.270 41.429 48.639 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 253 253 100.00 35 SUMMARY(RMSD_GDC): 8.515 8.326 9.213 23.378 18.371 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 35 4.0 12 2.38 35.714 33.323 0.483 LGA_LOCAL RMSD: 2.384 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.359 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.515 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.695677 * X + -0.069701 * Y + 0.714966 * Z + 61.472275 Y_new = 0.696357 * X + 0.309850 * Y + -0.647364 * Z + -27.767933 Z_new = -0.176410 * X + 0.948227 * Y + 0.264092 * Z + 3.388268 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.785887 0.177338 1.299169 [DEG: 45.0280 10.1607 74.4369 ] ZXZ: 0.834980 1.303534 -0.183939 [DEG: 47.8408 74.6870 -10.5389 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS319_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS319_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 35 4.0 12 2.38 33.323 8.51 REMARK ---------------------------------------------------------- MOLECULE T0548TS319_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 1 N THR 16 -39.654 -34.436 24.783 1.00 0.00 N ATOM 2 CA THR 16 -40.702 -35.470 24.660 1.00 0.00 C ATOM 3 C THR 16 -41.934 -34.878 24.086 1.00 0.00 C ATOM 4 O THR 16 -41.886 -33.912 23.327 1.00 0.00 O ATOM 5 H1 THR 16 -38.847 -34.651 25.119 1.00 0.00 H ATOM 6 H2 THR 16 -39.798 -33.708 25.293 1.00 0.00 H ATOM 7 H3 THR 16 -39.361 -34.003 24.051 1.00 0.00 H ATOM 8 CB THR 16 -41.015 -36.121 26.021 1.00 0.00 C ATOM 10 OG1 THR 16 -41.528 -35.131 26.921 1.00 0.00 O ATOM 11 CG2 THR 16 -39.755 -36.722 26.626 1.00 0.00 C ATOM 12 N VAL 17 -43.096 -35.443 24.441 1.00 0.00 N ATOM 13 CA VAL 17 -44.260 -34.859 23.872 1.00 0.00 C ATOM 14 C VAL 17 -44.426 -33.550 24.560 1.00 0.00 C ATOM 15 O VAL 17 -44.873 -33.477 25.702 1.00 0.00 O ATOM 17 CB VAL 17 -45.487 -35.776 24.032 1.00 0.00 C ATOM 18 CG1 VAL 17 -46.731 -35.105 23.469 1.00 0.00 C ATOM 19 CG2 VAL 17 -45.245 -37.114 23.349 1.00 0.00 C ATOM 20 N THR 18 -44.020 -32.481 23.852 1.00 0.00 N ATOM 21 CA THR 18 -44.074 -31.136 24.335 1.00 0.00 C ATOM 22 C THR 18 -45.498 -30.699 24.421 1.00 0.00 C ATOM 23 O THR 18 -45.868 -29.938 25.314 1.00 0.00 O ATOM 25 CB THR 18 -43.275 -30.179 23.431 1.00 0.00 C ATOM 27 OG1 THR 18 -43.812 -30.210 22.103 1.00 0.00 O ATOM 28 CG2 THR 18 -41.813 -30.597 23.374 1.00 0.00 C ATOM 29 N ASP 19 -46.341 -31.178 23.490 1.00 0.00 N ATOM 30 CA ASP 19 -47.696 -30.717 23.412 1.00 0.00 C ATOM 31 C ASP 19 -48.387 -31.015 24.696 1.00 0.00 C ATOM 32 O ASP 19 -49.209 -30.229 25.158 1.00 0.00 O ATOM 34 CB ASP 19 -48.416 -31.372 22.232 1.00 0.00 C ATOM 35 CG ASP 19 -47.941 -30.845 20.893 1.00 0.00 C ATOM 36 OD1 ASP 19 -47.265 -29.795 20.874 1.00 0.00 O ATOM 37 OD2 ASP 19 -48.244 -31.481 19.861 1.00 0.00 O ATOM 38 N ILE 20 -48.046 -32.150 25.323 1.00 0.00 N ATOM 39 CA ILE 20 -48.699 -32.566 26.528 1.00 0.00 C ATOM 40 C ILE 20 -48.493 -31.515 27.584 1.00 0.00 C ATOM 41 O ILE 20 -49.368 -31.288 28.420 1.00 0.00 O ATOM 43 CB ILE 20 -48.182 -33.936 27.005 1.00 0.00 C ATOM 44 CD1 ILE 20 -47.917 -36.361 26.264 1.00 0.00 C ATOM 45 CG1 ILE 20 -48.607 -35.035 26.029 1.00 0.00 C ATOM 46 CG2 ILE 20 -48.659 -34.222 28.421 1.00 0.00 C ATOM 47 N LYS 21 -47.326 -30.841 27.580 1.00 0.00 N ATOM 48 CA LYS 21 -46.998 -29.893 28.613 1.00 0.00 C ATOM 49 C LYS 21 -48.023 -28.800 28.695 1.00 0.00 C ATOM 50 O LYS 21 -48.432 -28.423 29.793 1.00 0.00 O ATOM 52 CB LYS 21 -45.611 -29.294 28.370 1.00 0.00 C ATOM 53 CD LYS 21 -43.123 -29.611 28.321 1.00 0.00 C ATOM 54 CE LYS 21 -41.978 -30.587 28.535 1.00 0.00 C ATOM 55 CG LYS 21 -44.465 -30.266 28.598 1.00 0.00 C ATOM 59 NZ LYS 21 -40.658 -29.972 28.226 1.00 0.00 N ATOM 60 N ASP 22 -48.468 -28.256 27.545 1.00 0.00 N ATOM 61 CA ASP 22 -49.396 -27.156 27.551 1.00 0.00 C ATOM 62 C ASP 22 -50.672 -27.614 28.182 1.00 0.00 C ATOM 63 O ASP 22 -51.355 -26.845 28.857 1.00 0.00 O ATOM 65 CB ASP 22 -49.628 -26.643 26.128 1.00 0.00 C ATOM 66 CG ASP 22 -48.430 -25.895 25.576 1.00 0.00 C ATOM 67 OD1 ASP 22 -47.534 -25.538 26.371 1.00 0.00 O ATOM 68 OD2 ASP 22 -48.386 -25.666 24.350 1.00 0.00 O ATOM 69 N LEU 23 -51.001 -28.903 27.992 1.00 0.00 N ATOM 70 CA LEU 23 -52.184 -29.497 28.542 1.00 0.00 C ATOM 71 C LEU 23 -52.082 -29.365 30.021 1.00 0.00 C ATOM 72 O LEU 23 -53.095 -29.351 30.719 1.00 0.00 O ATOM 74 CB LEU 23 -52.310 -30.954 28.094 1.00 0.00 C ATOM 75 CG LEU 23 -52.585 -31.184 26.607 1.00 0.00 C ATOM 76 CD1 LEU 23 -52.533 -32.668 26.274 1.00 0.00 C ATOM 77 CD2 LEU 23 -53.934 -30.602 26.213 1.00 0.00 C ATOM 78 N THR 24 -50.836 -29.249 30.514 1.00 0.00 N ATOM 79 CA THR 24 -50.541 -29.169 31.911 1.00 0.00 C ATOM 80 C THR 24 -50.606 -30.560 32.459 1.00 0.00 C ATOM 81 O THR 24 -50.652 -30.787 33.667 1.00 0.00 O ATOM 83 CB THR 24 -51.518 -28.229 32.641 1.00 0.00 C ATOM 85 OG1 THR 24 -52.780 -28.886 32.813 1.00 0.00 O ATOM 86 CG2 THR 24 -51.737 -26.958 31.834 1.00 0.00 C ATOM 87 N LYS 25 -50.551 -31.549 31.545 1.00 0.00 N ATOM 88 CA LYS 25 -50.487 -32.922 31.949 1.00 0.00 C ATOM 89 C LYS 25 -49.114 -33.112 32.511 1.00 0.00 C ATOM 90 O LYS 25 -48.163 -32.485 32.047 1.00 0.00 O ATOM 92 CB LYS 25 -50.781 -33.844 30.764 1.00 0.00 C ATOM 93 CD LYS 25 -52.441 -34.723 29.100 1.00 0.00 C ATOM 94 CE LYS 25 -53.866 -34.628 28.578 1.00 0.00 C ATOM 95 CG LYS 25 -52.208 -33.755 30.247 1.00 0.00 C ATOM 99 NZ LYS 25 -54.104 -35.562 27.442 1.00 0.00 N ATOM 100 N LEU 26 -48.973 -33.962 33.547 1.00 0.00 N ATOM 101 CA LEU 26 -47.685 -34.146 34.158 1.00 0.00 C ATOM 102 C LEU 26 -46.912 -35.175 33.393 1.00 0.00 C ATOM 103 O LEU 26 -47.487 -36.078 32.790 1.00 0.00 O ATOM 105 CB LEU 26 -47.842 -34.556 35.623 1.00 0.00 C ATOM 106 CG LEU 26 -48.531 -33.545 36.541 1.00 0.00 C ATOM 107 CD1 LEU 26 -48.717 -34.124 37.936 1.00 0.00 C ATOM 108 CD2 LEU 26 -47.733 -32.251 36.609 1.00 0.00 C ATOM 109 N GLY 27 -45.567 -35.036 33.387 1.00 0.00 N ATOM 110 CA GLY 27 -44.707 -35.980 32.729 1.00 0.00 C ATOM 111 C GLY 27 -43.481 -36.149 33.572 1.00 0.00 C ATOM 112 O GLY 27 -43.125 -35.260 34.346 1.00 0.00 O ATOM 114 N ALA 28 -42.788 -37.301 33.438 1.00 0.00 N ATOM 115 CA ALA 28 -41.573 -37.480 34.184 1.00 0.00 C ATOM 116 C ALA 28 -40.686 -36.408 33.677 1.00 0.00 C ATOM 117 O ALA 28 -40.849 -35.987 32.532 1.00 0.00 O ATOM 119 CB ALA 28 -41.026 -38.884 33.979 1.00 0.00 C ATOM 120 N ILE 29 -39.765 -35.873 34.515 1.00 0.00 N ATOM 121 CA ILE 29 -38.996 -34.758 34.033 1.00 0.00 C ATOM 122 C ILE 29 -39.957 -33.603 33.873 1.00 0.00 C ATOM 123 O ILE 29 -41.169 -33.764 33.765 1.00 0.00 O ATOM 125 CB ILE 29 -38.271 -35.099 32.718 1.00 0.00 C ATOM 126 CD1 ILE 29 -36.686 -36.793 31.662 1.00 0.00 C ATOM 127 CG1 ILE 29 -37.268 -36.234 32.941 1.00 0.00 C ATOM 128 CG2 ILE 29 -37.604 -33.860 32.141 1.00 0.00 C ATOM 129 N TYR 30 -39.461 -32.359 33.888 1.00 0.00 N ATOM 130 CA TYR 30 -40.380 -31.270 33.717 1.00 0.00 C ATOM 131 C TYR 30 -41.385 -31.259 34.824 1.00 0.00 C ATOM 132 O TYR 30 -42.556 -31.565 34.619 1.00 0.00 O ATOM 134 CB TYR 30 -41.079 -31.366 32.360 1.00 0.00 C ATOM 135 CG TYR 30 -40.132 -31.365 31.181 1.00 0.00 C ATOM 137 OH TYR 30 -37.534 -31.377 27.935 1.00 0.00 H ATOM 138 CZ TYR 30 -38.393 -31.371 29.010 1.00 0.00 C ATOM 139 CD1 TYR 30 -40.127 -32.415 30.271 1.00 0.00 C ATOM 140 CE1 TYR 30 -39.265 -32.423 29.192 1.00 0.00 C ATOM 141 CD2 TYR 30 -39.245 -30.314 30.982 1.00 0.00 C ATOM 142 CE2 TYR 30 -38.377 -30.306 29.908 1.00 0.00 C ATOM 143 N ASP 31 -40.935 -30.934 36.050 1.00 0.00 N ATOM 144 CA ASP 31 -41.869 -30.890 37.131 1.00 0.00 C ATOM 145 C ASP 31 -42.852 -29.788 36.886 1.00 0.00 C ATOM 146 O ASP 31 -42.630 -28.867 36.100 1.00 0.00 O ATOM 148 CB ASP 31 -41.141 -30.694 38.461 1.00 0.00 C ATOM 149 CG ASP 31 -40.358 -31.921 38.884 1.00 0.00 C ATOM 150 OD1 ASP 31 -40.570 -32.997 38.284 1.00 0.00 O ATOM 151 OD2 ASP 31 -39.533 -31.809 39.815 1.00 0.00 O ATOM 152 N LYS 32 -43.989 -29.912 37.590 1.00 0.00 N ATOM 153 CA LYS 32 -45.196 -29.141 37.514 1.00 0.00 C ATOM 154 C LYS 32 -45.075 -27.702 37.924 1.00 0.00 C ATOM 155 O LYS 32 -45.828 -26.875 37.418 1.00 0.00 O ATOM 157 CB LYS 32 -46.292 -29.776 38.371 1.00 0.00 C ATOM 158 CD LYS 32 -48.253 -29.166 36.929 1.00 0.00 C ATOM 159 CE LYS 32 -49.639 -28.541 36.897 1.00 0.00 C ATOM 160 CG LYS 32 -47.627 -29.052 38.309 1.00 0.00 C ATOM 164 NZ LYS 32 -50.245 -28.604 35.539 1.00 0.00 N ATOM 165 N THR 33 -44.161 -27.340 38.839 1.00 0.00 N ATOM 166 CA THR 33 -44.151 -25.994 39.353 1.00 0.00 C ATOM 167 C THR 33 -44.036 -24.975 38.254 1.00 0.00 C ATOM 168 O THR 33 -44.802 -24.012 38.234 1.00 0.00 O ATOM 170 CB THR 33 -43.000 -25.781 40.354 1.00 0.00 C ATOM 172 OG1 THR 33 -43.176 -26.650 41.480 1.00 0.00 O ATOM 173 CG2 THR 33 -42.983 -24.342 40.848 1.00 0.00 C ATOM 174 N LYS 34 -43.105 -25.148 37.295 1.00 0.00 N ATOM 175 CA LYS 34 -42.941 -24.107 36.318 1.00 0.00 C ATOM 176 C LYS 34 -44.023 -24.118 35.295 1.00 0.00 C ATOM 177 O LYS 34 -44.614 -25.147 34.969 1.00 0.00 O ATOM 179 CB LYS 34 -41.583 -24.233 35.625 1.00 0.00 C ATOM 180 CD LYS 34 -40.324 -22.778 37.237 1.00 0.00 C ATOM 181 CE LYS 34 -39.081 -22.651 38.102 1.00 0.00 C ATOM 182 CG LYS 34 -40.393 -24.141 36.567 1.00 0.00 C ATOM 186 NZ LYS 34 -39.027 -21.341 38.808 1.00 0.00 N ATOM 187 N LYS 35 -44.292 -22.912 34.762 1.00 0.00 N ATOM 188 CA LYS 35 -45.346 -22.680 33.828 1.00 0.00 C ATOM 189 C LYS 35 -44.792 -22.793 32.450 1.00 0.00 C ATOM 190 O LYS 35 -43.751 -22.223 32.129 1.00 0.00 O ATOM 192 CB LYS 35 -45.980 -21.309 34.065 1.00 0.00 C ATOM 193 CD LYS 35 -47.300 -19.793 35.569 1.00 0.00 C ATOM 194 CE LYS 35 -47.997 -19.656 36.912 1.00 0.00 C ATOM 195 CG LYS 35 -46.695 -21.177 35.400 1.00 0.00 C ATOM 199 NZ LYS 35 -48.562 -18.292 37.107 1.00 0.00 N ATOM 200 N TYR 36 -45.489 -23.559 31.593 1.00 0.00 N ATOM 201 CA TYR 36 -45.061 -23.673 30.238 1.00 0.00 C ATOM 202 C TYR 36 -46.151 -23.015 29.455 1.00 0.00 C ATOM 203 O TYR 36 -47.307 -23.436 29.515 1.00 0.00 O ATOM 205 CB TYR 36 -44.837 -25.141 29.869 1.00 0.00 C ATOM 206 CG TYR 36 -43.683 -25.787 30.601 1.00 0.00 C ATOM 208 OH TYR 36 -40.516 -27.579 32.614 1.00 0.00 H ATOM 209 CZ TYR 36 -41.563 -26.984 31.948 1.00 0.00 C ATOM 210 CD1 TYR 36 -43.731 -27.128 30.963 1.00 0.00 C ATOM 211 CE1 TYR 36 -42.681 -27.726 31.632 1.00 0.00 C ATOM 212 CD2 TYR 36 -42.549 -25.055 30.928 1.00 0.00 C ATOM 213 CE2 TYR 36 -41.488 -25.637 31.597 1.00 0.00 C ATOM 214 N TRP 37 -45.808 -21.957 28.696 1.00 0.00 N ATOM 215 CA TRP 37 -46.825 -21.243 27.981 1.00 0.00 C ATOM 216 C TRP 37 -46.622 -21.394 26.513 1.00 0.00 C ATOM 217 O TRP 37 -45.689 -22.053 26.060 1.00 0.00 O ATOM 219 CB TRP 37 -46.818 -19.764 28.376 1.00 0.00 C ATOM 222 CG TRP 37 -47.199 -19.523 29.805 1.00 0.00 C ATOM 223 CD1 TRP 37 -46.370 -19.542 30.889 1.00 0.00 C ATOM 225 NE1 TRP 37 -47.081 -19.276 32.034 1.00 0.00 N ATOM 226 CD2 TRP 37 -48.509 -19.227 30.304 1.00 0.00 C ATOM 227 CE2 TRP 37 -48.398 -19.078 31.699 1.00 0.00 C ATOM 228 CH2 TRP 37 -50.708 -18.637 31.900 1.00 0.00 H ATOM 229 CZ2 TRP 37 -49.494 -18.783 32.509 1.00 0.00 C ATOM 230 CE3 TRP 37 -49.764 -19.072 29.709 1.00 0.00 C ATOM 231 CZ3 TRP 37 -50.848 -18.780 30.515 1.00 0.00 C ATOM 232 N VAL 38 -47.539 -20.788 25.728 1.00 0.00 N ATOM 233 CA VAL 38 -47.529 -20.960 24.306 1.00 0.00 C ATOM 234 C VAL 38 -47.052 -19.726 23.609 1.00 0.00 C ATOM 235 O VAL 38 -47.377 -18.595 23.968 1.00 0.00 O ATOM 237 CB VAL 38 -48.921 -21.348 23.775 1.00 0.00 C ATOM 238 CG1 VAL 38 -48.902 -21.451 22.258 1.00 0.00 C ATOM 239 CG2 VAL 38 -49.384 -22.655 24.397 1.00 0.00 C ATOM 240 N TYR 39 -46.227 -19.973 22.578 1.00 0.00 N ATOM 241 CA TYR 39 -45.719 -19.033 21.628 1.00 0.00 C ATOM 242 C TYR 39 -45.945 -19.744 20.342 1.00 0.00 C ATOM 243 O TYR 39 -46.065 -20.968 20.337 1.00 0.00 O ATOM 245 CB TYR 39 -44.256 -18.702 21.931 1.00 0.00 C ATOM 246 CG TYR 39 -43.648 -17.693 20.983 1.00 0.00 C ATOM 248 OH TYR 39 -41.981 -14.907 18.386 1.00 0.00 H ATOM 249 CZ TYR 39 -42.532 -15.831 19.244 1.00 0.00 C ATOM 250 CD1 TYR 39 -43.922 -16.338 21.115 1.00 0.00 C ATOM 251 CE1 TYR 39 -43.370 -15.409 20.254 1.00 0.00 C ATOM 252 CD2 TYR 39 -42.802 -18.100 19.960 1.00 0.00 C ATOM 253 CE2 TYR 39 -42.241 -17.185 19.089 1.00 0.00 C ATOM 254 N GLN 40 -46.042 -19.017 19.216 1.00 0.00 N ATOM 255 CA GLN 40 -46.335 -19.723 18.008 1.00 0.00 C ATOM 256 C GLN 40 -45.145 -20.538 17.625 1.00 0.00 C ATOM 257 O GLN 40 -44.221 -20.062 16.969 1.00 0.00 O ATOM 259 CB GLN 40 -46.721 -18.745 16.897 1.00 0.00 C ATOM 260 CD GLN 40 -48.294 -20.269 15.638 1.00 0.00 C ATOM 261 CG GLN 40 -47.046 -19.411 15.570 1.00 0.00 C ATOM 262 OE1 GLN 40 -49.364 -19.796 16.024 1.00 0.00 O ATOM 265 NE2 GLN 40 -48.162 -21.535 15.264 1.00 0.00 N ATOM 266 N GLY 41 -45.163 -21.818 18.031 1.00 0.00 N ATOM 267 CA GLY 41 -44.119 -22.728 17.680 1.00 0.00 C ATOM 268 C GLY 41 -43.106 -22.808 18.778 1.00 0.00 C ATOM 269 O GLY 41 -42.391 -23.804 18.881 1.00 0.00 O ATOM 271 N LYS 42 -43.009 -21.781 19.645 1.00 0.00 N ATOM 272 CA LYS 42 -41.999 -21.888 20.661 1.00 0.00 C ATOM 273 C LYS 42 -42.689 -22.113 21.967 1.00 0.00 C ATOM 274 O LYS 42 -43.582 -21.360 22.352 1.00 0.00 O ATOM 276 CB LYS 42 -41.127 -20.630 20.685 1.00 0.00 C ATOM 277 CD LYS 42 -39.457 -19.163 19.519 1.00 0.00 C ATOM 278 CE LYS 42 -38.681 -18.921 18.236 1.00 0.00 C ATOM 279 CG LYS 42 -40.312 -20.417 19.420 1.00 0.00 C ATOM 283 NZ LYS 42 -37.871 -17.674 18.303 1.00 0.00 N ATOM 284 N PRO 43 -42.319 -23.161 22.651 1.00 0.00 N ATOM 285 CA PRO 43 -42.911 -23.392 23.938 1.00 0.00 C ATOM 286 C PRO 43 -42.290 -22.469 24.928 1.00 0.00 C ATOM 287 O PRO 43 -41.087 -22.222 24.839 1.00 0.00 O ATOM 288 CB PRO 43 -42.597 -24.861 24.231 1.00 0.00 C ATOM 289 CD PRO 43 -41.376 -24.289 22.253 1.00 0.00 C ATOM 290 CG PRO 43 -41.321 -25.123 23.502 1.00 0.00 C ATOM 291 N VAL 44 -43.079 -21.968 25.894 1.00 0.00 N ATOM 292 CA VAL 44 -42.516 -21.114 26.889 1.00 0.00 C ATOM 293 C VAL 44 -41.963 -22.046 27.901 1.00 0.00 C ATOM 294 O VAL 44 -42.666 -22.556 28.770 1.00 0.00 O ATOM 296 CB VAL 44 -43.567 -20.144 27.461 1.00 0.00 C ATOM 297 CG1 VAL 44 -42.953 -19.271 28.545 1.00 0.00 C ATOM 298 CG2 VAL 44 -44.158 -19.286 26.353 1.00 0.00 C ATOM 299 N MET 45 -40.662 -22.300 27.746 1.00 0.00 N ATOM 300 CA MET 45 -39.857 -23.164 28.541 1.00 0.00 C ATOM 301 C MET 45 -38.593 -23.150 27.744 1.00 0.00 C ATOM 302 O MET 45 -38.593 -22.579 26.659 1.00 0.00 O ATOM 304 CB MET 45 -40.530 -24.529 28.697 1.00 0.00 C ATOM 305 SD MET 45 -41.652 -26.807 27.590 1.00 0.00 S ATOM 306 CE MET 45 -43.295 -26.138 27.838 1.00 0.00 C ATOM 307 CG MET 45 -40.693 -25.294 27.393 1.00 0.00 C ATOM 308 N PRO 46 -37.516 -23.690 28.211 1.00 0.00 N ATOM 309 CA PRO 46 -36.292 -23.638 27.446 1.00 0.00 C ATOM 310 C PRO 46 -36.109 -24.616 26.315 1.00 0.00 C ATOM 311 O PRO 46 -35.072 -24.546 25.660 1.00 0.00 O ATOM 312 CB PRO 46 -35.196 -23.896 28.483 1.00 0.00 C ATOM 313 CD PRO 46 -37.264 -24.354 29.598 1.00 0.00 C ATOM 314 CG PRO 46 -35.833 -24.802 29.482 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 73.66 60.0 60 88.2 68 ARMSMC SECONDARY STRUCTURE . . 71.56 67.6 34 100.0 34 ARMSMC SURFACE . . . . . . . . 80.11 56.0 50 89.3 56 ARMSMC BURIED . . . . . . . . 21.66 80.0 10 83.3 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.89 46.4 28 87.5 32 ARMSSC1 RELIABLE SIDE CHAINS . 77.00 40.0 25 86.2 29 ARMSSC1 SECONDARY STRUCTURE . . 75.40 52.9 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 78.61 37.5 24 88.9 27 ARMSSC1 BURIED . . . . . . . . 10.46 100.0 4 80.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.20 57.1 21 84.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 58.59 57.9 19 90.5 21 ARMSSC2 SECONDARY STRUCTURE . . 44.48 76.9 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 65.31 52.6 19 86.4 22 ARMSSC2 BURIED . . . . . . . . 10.59 100.0 2 66.7 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.31 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 66.73 71.4 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 81.99 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 67.31 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 51.40 83.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 51.40 83.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 88.79 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 51.40 83.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.51 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.51 31 88.6 35 CRMSCA CRN = ALL/NP . . . . . 0.2747 CRMSCA SECONDARY STRUCTURE . . 7.99 17 100.0 17 CRMSCA SURFACE . . . . . . . . 8.72 26 89.7 29 CRMSCA BURIED . . . . . . . . 7.35 5 83.3 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.50 153 88.4 173 CRMSMC SECONDARY STRUCTURE . . 8.12 85 100.0 85 CRMSMC SURFACE . . . . . . . . 8.66 128 89.5 143 CRMSMC BURIED . . . . . . . . 7.64 25 83.3 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.05 129 82.7 156 CRMSSC RELIABLE SIDE CHAINS . 9.84 117 86.0 136 CRMSSC SECONDARY STRUCTURE . . 10.43 84 100.0 84 CRMSSC SURFACE . . . . . . . . 10.09 108 85.0 127 CRMSSC BURIED . . . . . . . . 9.84 21 72.4 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.25 253 85.5 296 CRMSALL SECONDARY STRUCTURE . . 9.40 152 100.0 152 CRMSALL SURFACE . . . . . . . . 9.35 212 87.2 243 CRMSALL BURIED . . . . . . . . 8.72 41 77.4 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.695 1.000 0.500 31 88.6 35 ERRCA SECONDARY STRUCTURE . . 7.451 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 7.830 1.000 0.500 26 89.7 29 ERRCA BURIED . . . . . . . . 6.993 1.000 0.500 5 83.3 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.672 1.000 0.500 153 88.4 173 ERRMC SECONDARY STRUCTURE . . 7.550 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 7.780 1.000 0.500 128 89.5 143 ERRMC BURIED . . . . . . . . 7.120 1.000 0.500 25 83.3 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.269 1.000 0.500 129 82.7 156 ERRSC RELIABLE SIDE CHAINS . 9.052 1.000 0.500 117 86.0 136 ERRSC SECONDARY STRUCTURE . . 9.914 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 9.232 1.000 0.500 108 85.0 127 ERRSC BURIED . . . . . . . . 9.460 1.000 0.500 21 72.4 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.416 1.000 0.500 253 85.5 296 ERRALL SECONDARY STRUCTURE . . 8.778 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 8.461 1.000 0.500 212 87.2 243 ERRALL BURIED . . . . . . . . 8.180 1.000 0.500 41 77.4 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 9 23 31 35 DISTCA CA (P) 0.00 0.00 8.57 25.71 65.71 35 DISTCA CA (RMS) 0.00 0.00 2.73 3.78 6.46 DISTCA ALL (N) 0 3 19 58 164 253 296 DISTALL ALL (P) 0.00 1.01 6.42 19.59 55.41 296 DISTALL ALL (RMS) 0.00 1.64 2.52 3.73 6.50 DISTALL END of the results output