####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS314_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS314_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 16 - 36 4.92 9.52 LONGEST_CONTINUOUS_SEGMENT: 21 26 - 46 4.99 10.54 LCS_AVERAGE: 59.35 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 34 - 46 1.65 12.76 LCS_AVERAGE: 25.39 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 34 - 40 0.44 13.63 LCS_AVERAGE: 15.35 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 3 19 3 3 3 3 3 6 8 10 12 14 14 16 19 21 25 28 29 32 33 34 LCS_GDT F 13 F 13 3 5 19 3 3 4 4 5 7 8 9 10 14 14 16 19 22 26 28 30 32 33 34 LCS_GDT H 14 H 14 4 7 19 3 4 4 6 7 8 12 13 13 15 16 18 21 24 27 30 30 32 33 34 LCS_GDT Y 15 Y 15 4 7 19 3 4 5 6 8 9 12 13 13 15 16 19 22 24 27 30 30 32 33 34 LCS_GDT T 16 T 16 5 7 21 3 4 5 6 8 9 12 13 13 15 16 19 22 24 27 30 30 32 33 34 LCS_GDT V 17 V 17 5 7 21 3 4 5 6 8 9 12 13 13 15 16 19 22 24 27 30 30 32 33 34 LCS_GDT T 18 T 18 5 7 21 3 4 5 6 8 9 12 13 13 15 16 19 22 24 27 30 30 32 33 34 LCS_GDT D 19 D 19 5 7 21 3 4 5 6 8 9 12 13 13 15 16 19 22 24 27 30 30 32 33 34 LCS_GDT I 20 I 20 5 7 21 3 4 5 6 8 9 12 13 13 15 16 19 22 24 27 30 30 32 33 34 LCS_GDT K 21 K 21 3 7 21 3 3 3 5 6 9 12 13 13 15 16 19 22 24 27 30 30 32 33 34 LCS_GDT D 22 D 22 3 7 21 3 4 4 5 6 7 11 13 13 15 16 19 22 24 27 30 30 32 33 34 LCS_GDT L 23 L 23 3 5 21 3 3 3 4 4 6 7 9 11 12 15 18 22 24 27 30 30 32 33 34 LCS_GDT T 24 T 24 4 7 21 3 3 4 6 6 7 8 9 11 12 13 18 22 24 27 30 30 32 33 34 LCS_GDT K 25 K 25 6 7 21 3 5 6 6 6 7 8 9 10 12 13 18 22 24 26 30 30 32 33 34 LCS_GDT L 26 L 26 6 7 21 4 5 6 6 6 7 8 10 12 14 15 18 22 24 26 30 30 32 33 34 LCS_GDT G 27 G 27 6 7 21 4 5 6 6 6 7 8 10 12 14 16 18 22 24 27 30 30 32 33 34 LCS_GDT A 28 A 28 6 7 21 4 5 6 6 6 7 8 10 12 15 16 18 22 24 27 30 30 32 33 34 LCS_GDT I 29 I 29 6 7 21 4 5 6 6 6 12 15 17 18 18 18 18 21 24 27 30 30 32 33 34 LCS_GDT Y 30 Y 30 6 7 21 4 5 6 6 6 10 15 17 18 18 18 19 22 24 27 30 30 32 33 34 LCS_GDT D 31 D 31 5 5 21 3 5 7 7 10 12 15 17 18 18 18 19 22 24 27 30 30 32 33 34 LCS_GDT K 32 K 32 5 6 21 3 5 5 6 6 11 15 17 18 18 18 19 22 24 27 30 30 32 33 34 LCS_GDT T 33 T 33 5 6 21 3 5 5 6 6 10 15 17 18 18 18 18 21 23 27 30 30 32 33 34 LCS_GDT K 34 K 34 7 13 21 6 7 9 11 12 13 15 17 18 18 18 19 22 24 27 30 30 32 33 34 LCS_GDT K 35 K 35 7 13 21 6 7 9 11 12 13 15 17 18 18 18 19 21 24 27 30 30 32 33 34 LCS_GDT Y 36 Y 36 7 13 21 6 7 9 11 12 13 15 17 18 18 18 19 22 24 27 30 30 32 33 34 LCS_GDT W 37 W 37 7 13 21 6 7 9 11 12 13 15 17 18 18 18 19 22 24 27 30 30 32 33 34 LCS_GDT V 38 V 38 7 13 21 6 7 9 11 12 13 15 17 18 18 18 19 22 24 27 30 30 32 33 34 LCS_GDT Y 39 Y 39 7 13 21 6 7 9 11 12 13 15 17 18 18 18 18 21 23 27 30 30 32 33 34 LCS_GDT Q 40 Q 40 7 13 21 4 7 8 10 12 13 14 17 18 18 18 18 21 22 27 30 30 32 33 34 LCS_GDT G 41 G 41 6 13 21 4 6 7 8 12 13 15 17 18 18 18 18 19 21 23 26 30 32 33 34 LCS_GDT K 42 K 42 6 13 21 4 7 9 11 12 13 15 17 18 18 18 19 21 24 27 30 30 32 33 34 LCS_GDT P 43 P 43 6 13 21 4 7 9 11 12 13 15 17 18 18 18 19 22 24 27 30 30 32 33 34 LCS_GDT V 44 V 44 6 13 21 4 7 9 11 12 13 15 17 18 18 18 19 21 23 27 30 30 32 33 34 LCS_GDT M 45 M 45 6 13 21 3 6 7 11 12 13 14 17 18 18 18 18 19 21 23 25 28 30 32 34 LCS_GDT P 46 P 46 6 13 21 3 6 8 11 12 13 14 17 18 18 18 18 19 20 20 20 20 22 26 27 LCS_AVERAGE LCS_A: 33.36 ( 15.35 25.39 59.35 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 7 9 11 12 13 15 17 18 18 18 19 22 24 27 30 30 32 33 34 GDT PERCENT_AT 17.14 20.00 25.71 31.43 34.29 37.14 42.86 48.57 51.43 51.43 51.43 54.29 62.86 68.57 77.14 85.71 85.71 91.43 94.29 97.14 GDT RMS_LOCAL 0.35 0.44 0.97 1.26 1.40 1.65 2.62 2.61 2.75 2.75 2.75 4.35 4.97 5.17 5.53 5.94 5.98 6.24 6.37 6.57 GDT RMS_ALL_AT 13.52 13.63 12.58 12.83 12.65 12.76 12.12 12.68 12.47 12.47 12.47 7.42 7.97 8.04 7.14 7.12 6.99 7.00 7.01 6.95 # Checking swapping # possible swapping detected: Y 30 Y 30 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 21.951 0 0.092 0.907 23.446 0.000 0.000 LGA F 13 F 13 19.898 0 0.037 1.440 21.736 0.000 0.000 LGA H 14 H 14 19.073 0 0.474 1.195 22.689 0.000 0.000 LGA Y 15 Y 15 14.268 0 0.108 0.730 17.224 0.000 0.754 LGA T 16 T 16 17.763 0 0.185 0.248 19.552 0.000 0.000 LGA V 17 V 17 17.303 0 0.075 1.263 21.058 0.000 0.000 LGA T 18 T 18 19.256 0 0.024 0.119 22.491 0.000 0.000 LGA D 19 D 19 15.826 0 0.581 0.749 17.970 0.000 0.000 LGA I 20 I 20 13.789 0 0.536 1.578 18.134 0.000 0.000 LGA K 21 K 21 17.098 0 0.596 0.946 23.326 0.000 0.000 LGA D 22 D 22 19.687 0 0.635 0.753 24.727 0.000 0.000 LGA L 23 L 23 19.732 0 0.584 0.720 23.459 0.000 0.000 LGA T 24 T 24 18.991 0 0.622 1.326 21.150 0.000 0.000 LGA K 25 K 25 22.441 0 0.485 0.512 33.746 0.000 0.000 LGA L 26 L 26 19.089 0 0.300 1.075 21.410 0.000 0.000 LGA G 27 G 27 12.973 0 0.184 0.184 14.880 0.119 0.119 LGA A 28 A 28 9.583 0 0.058 0.088 11.251 5.119 4.095 LGA I 29 I 29 3.960 0 0.069 0.678 7.551 34.881 29.762 LGA Y 30 Y 30 4.733 0 0.318 0.538 11.553 38.810 16.905 LGA D 31 D 31 3.634 0 0.274 0.404 5.229 35.952 35.119 LGA K 32 K 32 4.377 0 0.579 1.319 9.193 40.357 24.921 LGA T 33 T 33 4.285 0 0.659 0.905 7.797 40.714 28.776 LGA K 34 K 34 2.244 0 0.576 0.960 12.140 75.119 39.312 LGA K 35 K 35 1.594 0 0.184 1.324 8.448 70.833 49.894 LGA Y 36 Y 36 1.477 0 0.084 1.364 8.155 81.429 52.183 LGA W 37 W 37 1.537 0 0.078 0.561 7.222 77.143 49.184 LGA V 38 V 38 1.683 0 0.044 0.190 2.274 72.857 70.544 LGA Y 39 Y 39 2.025 0 0.129 0.171 3.812 59.524 58.254 LGA Q 40 Q 40 3.864 0 0.405 0.935 10.469 53.810 27.884 LGA G 41 G 41 2.129 0 0.309 0.309 2.135 73.214 73.214 LGA K 42 K 42 0.674 0 0.100 0.679 2.729 90.476 84.762 LGA P 43 P 43 0.755 0 0.057 0.236 0.972 92.857 91.837 LGA V 44 V 44 0.338 0 0.036 0.070 1.322 92.976 90.612 LGA M 45 M 45 2.098 0 0.184 1.029 4.714 68.929 58.095 LGA P 46 P 46 2.247 0 0.051 0.065 2.825 60.952 62.585 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 6.922 6.788 7.821 33.316 27.109 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 17 2.61 46.429 39.530 0.628 LGA_LOCAL RMSD: 2.607 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.612 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 6.922 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.445024 * X + -0.039585 * Y + 0.894643 * Z + 47.231373 Y_new = -0.893499 * X + 0.047424 * Y + 0.446554 * Z + -57.518757 Z_new = -0.060105 * X + -0.998090 * Y + -0.014264 * Z + 45.351189 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.108695 0.060141 -1.585087 [DEG: -63.5235 3.4458 -90.8188 ] ZXZ: 2.033757 1.585061 -3.081445 [DEG: 116.5257 90.8173 -176.5538 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS314_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS314_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 17 2.61 39.530 6.92 REMARK ---------------------------------------------------------- MOLECULE T0548TS314_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3l2q:A ATOM 87 N HIS 12 -40.815 -8.407 26.568 1.00 0.50 N ATOM 88 CA HIS 12 -39.495 -8.599 27.079 1.00 0.50 C ATOM 89 ND1 HIS 12 -37.622 -9.846 29.657 1.00 0.50 N ATOM 90 CG HIS 12 -37.920 -10.132 28.344 1.00 0.50 C ATOM 91 CB HIS 12 -39.282 -9.973 27.736 1.00 0.50 C ATOM 92 NE2 HIS 12 -35.735 -10.553 28.716 1.00 0.50 N ATOM 93 CD2 HIS 12 -36.757 -10.561 27.783 1.00 0.50 C ATOM 94 CE1 HIS 12 -36.303 -10.116 29.825 1.00 0.50 C ATOM 95 C HIS 12 -38.584 -8.511 25.903 1.00 0.50 C ATOM 96 O HIS 12 -38.998 -8.726 24.764 1.00 0.50 O ATOM 97 N PHE 13 -37.304 -8.186 26.150 1.00 0.50 N ATOM 98 CA PHE 13 -36.413 -8.032 25.045 1.00 0.50 C ATOM 99 CB PHE 13 -34.975 -7.664 25.448 1.00 0.50 C ATOM 100 CG PHE 13 -34.184 -7.557 24.189 1.00 0.50 C ATOM 101 CD1 PHE 13 -34.229 -6.413 23.426 1.00 0.50 C ATOM 102 CD2 PHE 13 -33.393 -8.603 23.774 1.00 0.50 C ATOM 103 CE1 PHE 13 -33.500 -6.317 22.264 1.00 0.50 C ATOM 104 CE2 PHE 13 -32.661 -8.513 22.614 1.00 0.50 C ATOM 105 CZ PHE 13 -32.712 -7.368 21.857 1.00 0.50 C ATOM 106 C PHE 13 -36.357 -9.318 24.294 1.00 0.50 C ATOM 107 O PHE 13 -36.216 -10.394 24.871 1.00 0.50 O ATOM 108 N HIS 14 -36.456 -9.196 22.958 1.00 0.50 N ATOM 109 CA HIS 14 -36.388 -10.261 22.001 1.00 0.50 C ATOM 110 ND1 HIS 14 -34.208 -11.327 19.691 1.00 0.50 N ATOM 111 CG HIS 14 -34.770 -11.844 20.836 1.00 0.50 C ATOM 112 CB HIS 14 -35.052 -11.027 22.064 1.00 0.50 C ATOM 113 NE2 HIS 14 -34.556 -13.488 19.305 1.00 0.50 N ATOM 114 CD2 HIS 14 -34.976 -13.166 20.582 1.00 0.50 C ATOM 115 CE1 HIS 14 -34.102 -12.353 18.808 1.00 0.50 C ATOM 116 C HIS 14 -37.514 -11.239 22.159 1.00 0.50 C ATOM 117 O HIS 14 -37.380 -12.389 21.750 1.00 0.50 O ATOM 118 N TYR 15 -38.674 -10.822 22.708 1.00 0.50 N ATOM 119 CA TYR 15 -39.784 -11.739 22.746 1.00 0.50 C ATOM 120 CB TYR 15 -40.446 -11.935 24.126 1.00 0.50 C ATOM 121 CG TYR 15 -39.574 -12.806 24.966 1.00 0.50 C ATOM 122 CD1 TYR 15 -39.630 -14.175 24.830 1.00 0.50 C ATOM 123 CD2 TYR 15 -38.711 -12.266 25.892 1.00 0.50 C ATOM 124 CE1 TYR 15 -38.836 -14.993 25.598 1.00 0.50 C ATOM 125 CE2 TYR 15 -37.916 -13.081 26.664 1.00 0.50 C ATOM 126 CZ TYR 15 -37.975 -14.444 26.517 1.00 0.50 C ATOM 127 OH TYR 15 -37.157 -15.277 27.310 1.00 0.50 H ATOM 128 C TYR 15 -40.825 -11.180 21.834 1.00 0.50 C ATOM 129 O TYR 15 -41.279 -10.051 22.011 1.00 0.50 O ATOM 130 N THR 16 -41.236 -11.980 20.829 1.00 0.50 N ATOM 131 CA THR 16 -42.165 -11.523 19.837 1.00 0.50 C ATOM 132 CB THR 16 -42.391 -12.520 18.739 1.00 0.50 C ATOM 133 OG1 THR 16 -43.001 -13.691 19.264 1.00 0.50 O ATOM 134 CG2 THR 16 -41.033 -12.873 18.107 1.00 0.50 C ATOM 135 C THR 16 -43.492 -11.273 20.473 1.00 0.50 C ATOM 136 O THR 16 -44.080 -12.155 21.096 1.00 0.50 O ATOM 137 N VAL 17 -43.976 -10.027 20.325 1.00 0.50 N ATOM 138 CA VAL 17 -45.236 -9.564 20.828 1.00 0.50 C ATOM 139 CB VAL 17 -45.385 -8.077 20.712 1.00 0.50 C ATOM 140 CG1 VAL 17 -44.300 -7.409 21.573 1.00 0.50 C ATOM 141 CG2 VAL 17 -45.326 -7.694 19.224 1.00 0.50 C ATOM 142 C VAL 17 -46.353 -10.181 20.045 1.00 0.50 C ATOM 143 O VAL 17 -47.428 -10.442 20.582 1.00 0.50 O ATOM 144 N THR 18 -46.119 -10.446 18.747 1.00 0.50 N ATOM 145 CA THR 18 -47.175 -10.862 17.872 1.00 0.50 C ATOM 146 CB THR 18 -46.682 -11.200 16.495 1.00 0.50 C ATOM 147 OG1 THR 18 -46.044 -10.073 15.913 1.00 0.50 O ATOM 148 CG2 THR 18 -47.884 -11.629 15.637 1.00 0.50 C ATOM 149 C THR 18 -47.860 -12.072 18.414 1.00 0.50 C ATOM 150 O THR 18 -49.088 -12.100 18.480 1.00 0.50 O ATOM 151 N ASP 19 -47.112 -13.106 18.839 1.00 0.50 N ATOM 152 CA ASP 19 -47.834 -14.245 19.321 1.00 0.50 C ATOM 153 CB ASP 19 -47.006 -15.533 19.446 1.00 0.50 C ATOM 154 CG ASP 19 -46.818 -16.061 18.031 1.00 0.50 C ATOM 155 OD1 ASP 19 -46.819 -15.228 17.086 1.00 0.50 O ATOM 156 OD2 ASP 19 -46.683 -17.304 17.873 1.00 0.50 O ATOM 157 C ASP 19 -48.418 -13.901 20.646 1.00 0.50 C ATOM 158 O ASP 19 -47.716 -13.660 21.626 1.00 0.50 O ATOM 159 N ILE 20 -49.760 -13.849 20.672 1.00 0.50 N ATOM 160 CA ILE 20 -50.510 -13.502 21.837 1.00 0.50 C ATOM 161 CB ILE 20 -50.693 -12.011 21.994 1.00 0.50 C ATOM 162 CG2 ILE 20 -49.310 -11.426 22.326 1.00 0.50 C ATOM 163 CG1 ILE 20 -51.352 -11.356 20.765 1.00 0.50 C ATOM 164 CD1 ILE 20 -52.846 -11.609 20.610 1.00 0.50 C ATOM 165 C ILE 20 -51.814 -14.226 21.760 1.00 0.50 C ATOM 166 O ILE 20 -51.917 -15.260 21.106 1.00 0.50 O ATOM 167 N LYS 21 -52.833 -13.722 22.479 1.00 0.50 N ATOM 168 CA LYS 21 -54.124 -14.344 22.524 1.00 0.50 C ATOM 169 CB LYS 21 -55.193 -13.458 23.176 1.00 0.50 C ATOM 170 CG LYS 21 -56.589 -14.079 23.149 1.00 0.50 C ATOM 171 CD LYS 21 -57.656 -13.199 23.797 1.00 0.50 C ATOM 172 CE LYS 21 -58.005 -11.966 22.965 1.00 0.50 C ATOM 173 NZ LYS 21 -59.043 -11.164 23.650 1.00 0.50 N ATOM 174 C LYS 21 -54.624 -14.593 21.142 1.00 0.50 C ATOM 175 O LYS 21 -54.522 -13.744 20.254 1.00 0.50 O ATOM 176 N ASP 22 -55.178 -15.798 20.920 1.00 0.50 N ATOM 177 CA ASP 22 -55.779 -16.115 19.660 1.00 0.50 C ATOM 178 CB ASP 22 -55.755 -17.616 19.324 1.00 0.50 C ATOM 179 CG ASP 22 -56.042 -17.790 17.837 1.00 0.50 C ATOM 180 OD1 ASP 22 -56.178 -16.759 17.126 1.00 0.50 O ATOM 181 OD2 ASP 22 -56.122 -18.966 17.393 1.00 0.50 O ATOM 182 C ASP 22 -57.208 -15.704 19.802 1.00 0.50 C ATOM 183 O ASP 22 -57.587 -15.111 20.809 1.00 0.50 O ATOM 184 N LEU 23 -58.048 -15.990 18.789 1.00 0.50 N ATOM 185 CA LEU 23 -59.417 -15.601 18.931 1.00 0.50 C ATOM 186 CB LEU 23 -60.143 -15.393 17.591 1.00 0.50 C ATOM 187 CG LEU 23 -59.564 -14.233 16.762 1.00 0.50 C ATOM 188 CD1 LEU 23 -60.372 -14.014 15.473 1.00 0.50 C ATOM 189 CD2 LEU 23 -59.425 -12.958 17.609 1.00 0.50 C ATOM 190 C LEU 23 -60.121 -16.701 19.649 1.00 0.50 C ATOM 191 O LEU 23 -60.496 -17.712 19.059 1.00 0.50 O ATOM 192 N THR 24 -60.302 -16.522 20.970 1.00 0.50 N ATOM 193 CA THR 24 -60.991 -17.488 21.767 1.00 0.50 C ATOM 194 CB THR 24 -60.096 -18.581 22.270 1.00 0.50 C ATOM 195 OG1 THR 24 -60.842 -19.522 23.027 1.00 0.50 O ATOM 196 CG2 THR 24 -58.982 -17.952 23.123 1.00 0.50 C ATOM 197 C THR 24 -61.533 -16.752 22.944 1.00 0.50 C ATOM 198 O THR 24 -61.257 -15.565 23.117 1.00 0.50 O ATOM 199 N LYS 25 -62.342 -17.426 23.784 1.00 0.50 N ATOM 200 CA LYS 25 -62.848 -16.734 24.930 1.00 0.50 C ATOM 201 CB LYS 25 -64.248 -17.203 25.364 1.00 0.50 C ATOM 202 CG LYS 25 -64.789 -16.456 26.585 1.00 0.50 C ATOM 203 CD LYS 25 -66.294 -16.632 26.795 1.00 0.50 C ATOM 204 CE LYS 25 -66.698 -18.034 27.253 1.00 0.50 C ATOM 205 NZ LYS 25 -68.165 -18.103 27.429 1.00 0.50 N ATOM 206 C LYS 25 -61.907 -17.012 26.054 1.00 0.50 C ATOM 207 O LYS 25 -62.176 -17.842 26.922 1.00 0.50 O ATOM 208 N LEU 26 -60.762 -16.307 26.050 1.00 0.50 N ATOM 209 CA LEU 26 -59.761 -16.442 27.066 1.00 0.50 C ATOM 210 CB LEU 26 -58.537 -17.268 26.626 1.00 0.50 C ATOM 211 CG LEU 26 -58.791 -18.789 26.591 1.00 0.50 C ATOM 212 CD1 LEU 26 -59.933 -19.162 25.636 1.00 0.50 C ATOM 213 CD2 LEU 26 -57.495 -19.558 26.292 1.00 0.50 C ATOM 214 C LEU 26 -59.292 -15.066 27.392 1.00 0.50 C ATOM 215 O LEU 26 -59.665 -14.493 28.415 1.00 0.50 O ATOM 216 N GLY 27 -58.462 -14.493 26.501 1.00 0.50 N ATOM 217 CA GLY 27 -57.933 -13.183 26.728 1.00 0.50 C ATOM 218 C GLY 27 -56.489 -13.340 27.063 1.00 0.50 C ATOM 219 O GLY 27 -55.724 -12.379 27.015 1.00 0.50 O ATOM 220 N ALA 28 -56.074 -14.571 27.409 1.00 0.50 N ATOM 221 CA ALA 28 -54.694 -14.774 27.723 1.00 0.50 C ATOM 222 CB ALA 28 -54.399 -16.147 28.352 1.00 0.50 C ATOM 223 C ALA 28 -53.926 -14.684 26.448 1.00 0.50 C ATOM 224 O ALA 28 -54.398 -15.102 25.392 1.00 0.50 O ATOM 225 N ILE 29 -52.714 -14.104 26.518 1.00 0.50 N ATOM 226 CA ILE 29 -51.875 -14.000 25.363 1.00 0.50 C ATOM 227 CB ILE 29 -51.586 -12.584 24.948 1.00 0.50 C ATOM 228 CG2 ILE 29 -52.930 -11.905 24.640 1.00 0.50 C ATOM 229 CG1 ILE 29 -50.770 -11.845 26.024 1.00 0.50 C ATOM 230 CD1 ILE 29 -51.495 -11.698 27.361 1.00 0.50 C ATOM 231 C ILE 29 -50.577 -14.615 25.759 1.00 0.50 C ATOM 232 O ILE 29 -50.108 -14.370 26.871 1.00 0.50 O ATOM 233 N TYR 30 -49.955 -15.404 24.851 1.00 0.50 N ATOM 234 CA TYR 30 -48.738 -16.085 25.195 1.00 0.50 C ATOM 235 CB TYR 30 -47.605 -15.095 25.521 1.00 0.50 C ATOM 236 CG TYR 30 -46.294 -15.803 25.516 1.00 0.50 C ATOM 237 CD1 TYR 30 -45.846 -16.507 26.610 1.00 0.50 C ATOM 238 CD2 TYR 30 -45.500 -15.742 24.393 1.00 0.50 C ATOM 239 CE1 TYR 30 -44.627 -17.146 26.575 1.00 0.50 C ATOM 240 CE2 TYR 30 -44.282 -16.376 24.353 1.00 0.50 C ATOM 241 CZ TYR 30 -43.843 -17.079 25.446 1.00 0.50 C ATOM 242 OH TYR 30 -42.593 -17.729 25.408 1.00 0.50 H ATOM 243 C TYR 30 -49.094 -16.854 26.425 1.00 0.50 C ATOM 244 O TYR 30 -48.446 -16.743 27.463 1.00 0.50 O ATOM 245 N ASP 31 -50.184 -17.639 26.312 1.00 0.50 N ATOM 246 CA ASP 31 -50.776 -18.326 27.422 1.00 0.50 C ATOM 247 CB ASP 31 -52.131 -18.978 27.084 1.00 0.50 C ATOM 248 CG ASP 31 -52.865 -19.327 28.377 1.00 0.50 C ATOM 249 OD1 ASP 31 -52.499 -18.770 29.446 1.00 0.50 O ATOM 250 OD2 ASP 31 -53.814 -20.154 28.307 1.00 0.50 O ATOM 251 C ASP 31 -49.865 -19.402 27.894 1.00 0.50 C ATOM 252 O ASP 31 -48.899 -19.774 27.233 1.00 0.50 O ATOM 253 N LYS 32 -50.164 -19.903 29.108 1.00 0.50 N ATOM 254 CA LYS 32 -49.381 -20.922 29.727 1.00 0.50 C ATOM 255 CB LYS 32 -48.881 -20.498 31.118 1.00 0.50 C ATOM 256 CG LYS 32 -48.036 -21.540 31.849 1.00 0.50 C ATOM 257 CD LYS 32 -47.267 -20.955 33.036 1.00 0.50 C ATOM 258 CE LYS 32 -46.623 -22.011 33.932 1.00 0.50 C ATOM 259 NZ LYS 32 -47.661 -22.631 34.782 1.00 0.50 N ATOM 260 C LYS 32 -50.249 -22.122 29.908 1.00 0.50 C ATOM 261 O LYS 32 -51.416 -22.016 30.274 1.00 0.50 O ATOM 262 N THR 33 -49.678 -23.305 29.617 1.00 0.50 N ATOM 263 CA THR 33 -50.368 -24.539 29.830 1.00 0.50 C ATOM 264 CB THR 33 -49.966 -25.632 28.888 1.00 0.50 C ATOM 265 OG1 THR 33 -48.583 -25.922 29.035 1.00 0.50 O ATOM 266 CG2 THR 33 -50.272 -25.186 27.450 1.00 0.50 C ATOM 267 C THR 33 -49.977 -24.954 31.203 1.00 0.50 C ATOM 268 O THR 33 -49.339 -24.188 31.923 1.00 0.50 O ATOM 269 N LYS 34 -50.341 -26.182 31.607 1.00 0.50 N ATOM 270 CA LYS 34 -50.025 -26.561 32.950 1.00 0.50 C ATOM 271 CB LYS 34 -50.509 -27.975 33.315 1.00 0.50 C ATOM 272 CG LYS 34 -50.179 -28.379 34.753 1.00 0.50 C ATOM 273 CD LYS 34 -50.925 -29.629 35.226 1.00 0.50 C ATOM 274 CE LYS 34 -50.590 -30.030 36.664 1.00 0.50 C ATOM 275 NZ LYS 34 -49.193 -30.509 36.746 1.00 0.50 N ATOM 276 C LYS 34 -48.543 -26.526 33.121 1.00 0.50 C ATOM 277 O LYS 34 -47.821 -27.387 32.625 1.00 0.50 O ATOM 278 N LYS 35 -48.070 -25.500 33.853 1.00 0.50 N ATOM 279 CA LYS 35 -46.695 -25.309 34.210 1.00 0.50 C ATOM 280 CB LYS 35 -46.164 -26.388 35.174 1.00 0.50 C ATOM 281 CG LYS 35 -44.803 -26.049 35.787 1.00 0.50 C ATOM 282 CD LYS 35 -44.827 -24.844 36.732 1.00 0.50 C ATOM 283 CE LYS 35 -43.462 -24.513 37.340 1.00 0.50 C ATOM 284 NZ LYS 35 -42.620 -23.808 36.349 1.00 0.50 N ATOM 285 C LYS 35 -45.805 -25.248 33.004 1.00 0.50 C ATOM 286 O LYS 35 -44.626 -25.587 33.090 1.00 0.50 O ATOM 287 N TYR 36 -46.321 -24.810 31.840 1.00 0.50 N ATOM 288 CA TYR 36 -45.426 -24.684 30.723 1.00 0.50 C ATOM 289 CB TYR 36 -45.533 -25.814 29.682 1.00 0.50 C ATOM 290 CG TYR 36 -44.899 -27.034 30.259 1.00 0.50 C ATOM 291 CD1 TYR 36 -45.596 -27.870 31.101 1.00 0.50 C ATOM 292 CD2 TYR 36 -43.596 -27.345 29.951 1.00 0.50 C ATOM 293 CE1 TYR 36 -45.003 -28.993 31.628 1.00 0.50 C ATOM 294 CE2 TYR 36 -42.994 -28.466 30.473 1.00 0.50 C ATOM 295 CZ TYR 36 -43.700 -29.292 31.315 1.00 0.50 C ATOM 296 OH TYR 36 -43.087 -30.444 31.854 1.00 0.50 H ATOM 297 C TYR 36 -45.692 -23.392 30.019 1.00 0.50 C ATOM 298 O TYR 36 -46.841 -22.990 29.848 1.00 0.50 O ATOM 299 N TRP 37 -44.613 -22.698 29.599 1.00 0.50 N ATOM 300 CA TRP 37 -44.780 -21.489 28.847 1.00 0.50 C ATOM 301 CB TRP 37 -43.484 -20.719 28.537 1.00 0.50 C ATOM 302 CG TRP 37 -42.750 -20.049 29.671 1.00 0.50 C ATOM 303 CD2 TRP 37 -41.622 -19.194 29.443 1.00 0.50 C ATOM 304 CD1 TRP 37 -42.946 -20.085 31.020 1.00 0.50 C ATOM 305 NE1 TRP 37 -42.002 -19.303 31.648 1.00 0.50 N ATOM 306 CE2 TRP 37 -41.181 -18.749 30.688 1.00 0.50 C ATOM 307 CE3 TRP 37 -41.004 -18.808 28.288 1.00 0.50 C ATOM 308 CZ2 TRP 37 -40.111 -17.908 30.790 1.00 0.50 C ATOM 309 CZ3 TRP 37 -39.921 -17.964 28.397 1.00 0.50 C ATOM 310 CH2 TRP 37 -39.483 -17.522 29.628 1.00 0.50 H ATOM 311 C TRP 37 -45.215 -21.933 27.495 1.00 0.50 C ATOM 312 O TRP 37 -44.660 -22.883 26.944 1.00 0.50 O ATOM 313 N VAL 38 -46.211 -21.247 26.914 1.00 0.50 N ATOM 314 CA VAL 38 -46.628 -21.653 25.612 1.00 0.50 C ATOM 315 CB VAL 38 -48.042 -22.144 25.568 1.00 0.50 C ATOM 316 CG1 VAL 38 -48.403 -22.481 24.112 1.00 0.50 C ATOM 317 CG2 VAL 38 -48.170 -23.330 26.537 1.00 0.50 C ATOM 318 C VAL 38 -46.545 -20.469 24.715 1.00 0.50 C ATOM 319 O VAL 38 -46.836 -19.339 25.106 1.00 0.50 O ATOM 320 N TYR 39 -46.117 -20.729 23.472 1.00 0.50 N ATOM 321 CA TYR 39 -46.014 -19.742 22.447 1.00 0.50 C ATOM 322 CB TYR 39 -44.552 -19.570 21.984 1.00 0.50 C ATOM 323 CG TYR 39 -44.404 -18.633 20.835 1.00 0.50 C ATOM 324 CD1 TYR 39 -44.391 -17.272 21.025 1.00 0.50 C ATOM 325 CD2 TYR 39 -44.253 -19.131 19.562 1.00 0.50 C ATOM 326 CE1 TYR 39 -44.229 -16.421 19.957 1.00 0.50 C ATOM 327 CE2 TYR 39 -44.091 -18.288 18.490 1.00 0.50 C ATOM 328 CZ TYR 39 -44.091 -16.928 18.688 1.00 0.50 C ATOM 329 OH TYR 39 -43.928 -16.059 17.589 1.00 0.50 H ATOM 330 C TYR 39 -46.842 -20.326 21.360 1.00 0.50 C ATOM 331 O TYR 39 -46.927 -21.548 21.247 1.00 0.50 O ATOM 332 N GLN 40 -47.490 -19.474 20.546 1.00 0.50 N ATOM 333 CA GLN 40 -48.399 -19.997 19.573 1.00 0.50 C ATOM 334 CB GLN 40 -49.026 -18.909 18.686 1.00 0.50 C ATOM 335 CG GLN 40 -50.018 -19.465 17.664 1.00 0.50 C ATOM 336 CD GLN 40 -50.564 -18.294 16.861 1.00 0.50 C ATOM 337 OE1 GLN 40 -50.063 -17.177 16.955 1.00 0.50 O ATOM 338 NE2 GLN 40 -51.624 -18.558 16.049 1.00 0.50 N ATOM 339 C GLN 40 -47.635 -20.915 18.686 1.00 0.50 C ATOM 340 O GLN 40 -48.108 -22.000 18.355 1.00 0.50 O ATOM 341 N GLY 41 -46.424 -20.505 18.281 1.00 0.50 N ATOM 342 CA GLY 41 -45.657 -21.361 17.432 1.00 0.50 C ATOM 343 C GLY 41 -45.233 -22.623 18.147 1.00 0.50 C ATOM 344 O GLY 41 -45.447 -23.715 17.622 1.00 0.50 O ATOM 345 N LYS 42 -44.644 -22.518 19.368 1.00 0.50 N ATOM 346 CA LYS 42 -44.124 -23.691 20.039 1.00 0.50 C ATOM 347 CB LYS 42 -42.765 -24.139 19.471 1.00 0.50 C ATOM 348 CG LYS 42 -42.884 -24.617 18.022 1.00 0.50 C ATOM 349 CD LYS 42 -41.572 -24.665 17.240 1.00 0.50 C ATOM 350 CE LYS 42 -41.765 -25.148 15.800 1.00 0.50 C ATOM 351 NZ LYS 42 -40.585 -24.806 14.976 1.00 0.50 N ATOM 352 C LYS 42 -43.953 -23.391 21.504 1.00 0.50 C ATOM 353 O LYS 42 -44.204 -22.276 21.949 1.00 0.50 O ATOM 354 N PRO 43 -43.572 -24.370 22.286 1.00 0.50 N ATOM 355 CA PRO 43 -43.395 -24.140 23.701 1.00 0.50 C ATOM 356 CD PRO 43 -43.988 -25.734 22.011 1.00 0.50 C ATOM 357 CB PRO 43 -43.584 -25.498 24.384 1.00 0.50 C ATOM 358 CG PRO 43 -43.516 -26.525 23.240 1.00 0.50 C ATOM 359 C PRO 43 -42.090 -23.478 24.026 1.00 0.50 C ATOM 360 O PRO 43 -41.142 -23.628 23.259 1.00 0.50 O ATOM 361 N VAL 44 -42.018 -22.739 25.156 1.00 0.50 N ATOM 362 CA VAL 44 -40.779 -22.110 25.521 1.00 0.50 C ATOM 363 CB VAL 44 -40.860 -20.613 25.583 1.00 0.50 C ATOM 364 CG1 VAL 44 -39.509 -20.075 26.084 1.00 0.50 C ATOM 365 CG2 VAL 44 -41.263 -20.085 24.195 1.00 0.50 C ATOM 366 C VAL 44 -40.406 -22.588 26.889 1.00 0.50 C ATOM 367 O VAL 44 -41.213 -22.545 27.814 1.00 0.50 O ATOM 368 N MET 45 -39.156 -23.060 27.055 1.00 0.50 N ATOM 369 CA MET 45 -38.746 -23.547 28.340 1.00 0.50 C ATOM 370 CB MET 45 -37.741 -24.711 28.307 1.00 0.50 C ATOM 371 CG MET 45 -38.291 -25.994 27.684 1.00 0.50 C ATOM 372 SD MET 45 -37.342 -27.484 28.113 1.00 0.50 S ATOM 373 CE MET 45 -35.725 -26.766 27.708 1.00 0.50 C ATOM 374 C MET 45 -38.105 -22.441 29.115 1.00 0.50 C ATOM 375 O MET 45 -37.787 -21.369 28.602 1.00 0.50 O ATOM 376 N PRO 46 -37.955 -22.719 30.380 1.00 0.50 N ATOM 377 CA PRO 46 -37.318 -21.792 31.277 1.00 0.50 C ATOM 378 CD PRO 46 -38.964 -23.519 31.058 1.00 0.50 C ATOM 379 CB PRO 46 -37.687 -22.250 32.685 1.00 0.50 C ATOM 380 CG PRO 46 -39.031 -22.973 32.493 1.00 0.50 C ATOM 381 C PRO 46 -35.847 -21.780 31.017 1.00 0.50 C ATOM 382 O PRO 46 -35.347 -22.696 30.367 1.00 0.50 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 74.30 52.9 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 78.09 58.8 34 100.0 34 ARMSMC SURFACE . . . . . . . . 79.11 46.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 45.65 83.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.87 50.0 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 72.18 48.3 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 73.29 58.8 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 79.13 40.7 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 13.11 100.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.43 44.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 60.23 42.9 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 54.40 53.8 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 68.19 45.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 61.57 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 36.17 87.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 37.36 85.7 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 68.84 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 36.17 87.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.46 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 91.46 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 90.00 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 91.46 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.92 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.92 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.1978 CRMSCA SECONDARY STRUCTURE . . 5.86 17 100.0 17 CRMSCA SURFACE . . . . . . . . 7.16 29 100.0 29 CRMSCA BURIED . . . . . . . . 5.63 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.95 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 5.97 85 100.0 85 CRMSMC SURFACE . . . . . . . . 7.19 143 100.0 143 CRMSMC BURIED . . . . . . . . 5.67 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.68 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 8.70 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 8.79 84 100.0 84 CRMSSC SURFACE . . . . . . . . 8.72 127 100.0 127 CRMSSC BURIED . . . . . . . . 8.53 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.84 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 7.55 152 100.0 152 CRMSALL SURFACE . . . . . . . . 7.96 243 100.0 243 CRMSALL BURIED . . . . . . . . 7.28 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.948 0.828 0.414 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 5.048 0.817 0.408 17 100.0 17 ERRCA SURFACE . . . . . . . . 6.181 0.832 0.416 29 100.0 29 ERRCA BURIED . . . . . . . . 4.822 0.805 0.403 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.919 0.830 0.415 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 5.069 0.813 0.407 85 100.0 85 ERRMC SURFACE . . . . . . . . 6.142 0.835 0.417 143 100.0 143 ERRMC BURIED . . . . . . . . 4.853 0.808 0.404 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.618 0.864 0.432 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 7.657 0.867 0.434 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 7.724 0.866 0.433 84 100.0 84 ERRSC SURFACE . . . . . . . . 7.673 0.868 0.434 127 100.0 127 ERRSC BURIED . . . . . . . . 7.379 0.847 0.423 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.742 0.846 0.423 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 6.417 0.839 0.420 152 100.0 152 ERRALL SURFACE . . . . . . . . 6.871 0.850 0.425 243 100.0 243 ERRALL BURIED . . . . . . . . 6.153 0.829 0.414 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 9 33 35 35 DISTCA CA (P) 0.00 2.86 8.57 25.71 94.29 35 DISTCA CA (RMS) 0.00 1.02 2.20 3.70 6.46 DISTCA ALL (N) 0 6 19 62 244 296 296 DISTALL ALL (P) 0.00 2.03 6.42 20.95 82.43 296 DISTALL ALL (RMS) 0.00 1.60 2.38 3.73 6.46 DISTALL END of the results output