####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS307_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS307_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 24 - 46 4.20 15.17 LCS_AVERAGE: 58.86 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 32 - 46 1.99 17.08 LCS_AVERAGE: 29.55 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 34 - 45 0.93 16.97 LCS_AVERAGE: 19.43 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 4 6 16 3 4 4 5 5 6 6 9 11 12 12 13 13 14 15 18 18 21 21 22 LCS_GDT F 13 F 13 4 6 16 3 4 4 5 6 7 9 11 12 12 13 14 15 16 17 18 19 21 21 22 LCS_GDT H 14 H 14 4 6 16 3 4 4 5 6 6 9 11 12 12 13 14 15 16 17 18 19 21 21 22 LCS_GDT Y 15 Y 15 4 6 16 3 4 5 5 6 7 9 11 12 12 13 14 15 16 17 18 19 21 21 22 LCS_GDT T 16 T 16 3 6 16 3 3 5 5 6 7 9 11 12 12 13 14 15 16 17 18 19 21 21 22 LCS_GDT V 17 V 17 3 6 16 3 3 5 5 6 7 9 11 12 12 13 14 15 16 17 18 19 21 21 22 LCS_GDT T 18 T 18 3 6 16 3 3 5 5 5 7 9 11 12 12 13 14 15 16 17 18 19 21 22 23 LCS_GDT D 19 D 19 3 6 16 3 3 5 5 6 6 9 11 12 12 13 14 15 16 17 18 19 21 21 22 LCS_GDT I 20 I 20 4 6 16 3 4 4 5 5 7 9 11 12 12 13 14 15 16 17 18 19 21 21 22 LCS_GDT K 21 K 21 4 5 16 3 4 4 4 5 5 9 11 12 12 13 14 15 16 17 18 19 21 21 22 LCS_GDT D 22 D 22 4 5 16 3 4 4 5 5 6 9 11 11 12 13 14 15 16 17 18 19 21 22 23 LCS_GDT L 23 L 23 4 5 16 3 4 4 5 5 7 9 11 12 12 13 14 15 16 17 18 19 21 21 22 LCS_GDT T 24 T 24 3 5 23 3 3 3 5 5 6 7 9 12 12 13 14 15 16 17 19 21 22 23 23 LCS_GDT K 25 K 25 4 9 23 3 3 6 7 7 9 9 13 19 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT L 26 L 26 4 9 23 3 4 6 7 8 9 10 17 19 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT G 27 G 27 4 9 23 3 4 5 7 8 9 11 17 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT A 28 A 28 4 9 23 3 4 6 7 8 9 14 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT I 29 I 29 5 9 23 3 5 6 7 8 12 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT Y 30 Y 30 5 9 23 3 5 7 9 10 11 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT D 31 D 31 5 9 23 3 5 7 9 10 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT K 32 K 32 5 15 23 3 5 5 7 9 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT T 33 T 33 5 15 23 3 5 6 7 8 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT K 34 K 34 12 15 23 7 10 11 13 13 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT K 35 K 35 12 15 23 4 10 11 13 13 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT Y 36 Y 36 12 15 23 7 10 11 13 13 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT W 37 W 37 12 15 23 7 10 11 13 13 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT V 38 V 38 12 15 23 7 10 11 13 13 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT Y 39 Y 39 12 15 23 5 10 11 13 13 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT Q 40 Q 40 12 15 23 3 9 11 13 13 13 15 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT G 41 G 41 12 15 23 7 10 11 13 13 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT K 42 K 42 12 15 23 7 10 11 13 13 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT P 43 P 43 12 15 23 7 10 11 13 13 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT V 44 V 44 12 15 23 3 10 11 13 13 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT M 45 M 45 12 15 23 3 7 10 13 13 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_GDT P 46 P 46 6 15 23 3 7 11 13 13 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 LCS_AVERAGE LCS_A: 35.95 ( 19.43 29.55 58.86 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 10 11 13 13 13 17 18 20 20 21 22 22 22 22 22 22 22 23 23 GDT PERCENT_AT 20.00 28.57 31.43 37.14 37.14 37.14 48.57 51.43 57.14 57.14 60.00 62.86 62.86 62.86 62.86 62.86 62.86 62.86 65.71 65.71 GDT RMS_LOCAL 0.29 0.54 0.69 1.00 1.00 1.00 2.38 2.48 2.93 2.93 3.25 3.56 3.56 3.56 3.56 3.56 3.56 3.56 4.20 4.20 GDT RMS_ALL_AT 17.09 16.90 16.89 17.16 17.16 17.16 16.89 16.86 16.62 16.62 16.14 15.56 15.56 15.56 15.56 15.56 15.56 15.56 15.17 15.17 # Checking swapping # possible swapping detected: Y 15 Y 15 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 31.180 0 0.406 1.070 33.411 0.000 0.000 LGA F 13 F 13 32.797 0 0.053 1.250 39.068 0.000 0.000 LGA H 14 H 14 31.969 0 0.442 1.146 33.878 0.000 0.000 LGA Y 15 Y 15 32.725 0 0.686 1.571 38.875 0.000 0.000 LGA T 16 T 16 31.893 0 0.422 1.284 34.325 0.000 0.000 LGA V 17 V 17 28.358 0 0.283 0.268 30.110 0.000 0.000 LGA T 18 T 18 26.175 0 0.208 1.113 27.910 0.000 0.000 LGA D 19 D 19 27.644 0 0.574 0.766 32.793 0.000 0.000 LGA I 20 I 20 24.685 0 0.251 0.801 25.390 0.000 0.000 LGA K 21 K 21 23.550 0 0.545 1.451 26.461 0.000 0.000 LGA D 22 D 22 21.224 0 0.563 1.165 25.064 0.000 0.000 LGA L 23 L 23 19.180 0 0.231 0.401 23.841 0.000 0.000 LGA T 24 T 24 12.692 0 0.128 1.144 15.255 0.119 0.068 LGA K 25 K 25 10.795 0 0.319 1.442 17.411 0.000 0.000 LGA L 26 L 26 9.379 0 0.588 0.569 10.468 1.548 1.071 LGA G 27 G 27 7.167 0 0.565 0.565 7.794 13.929 13.929 LGA A 28 A 28 5.579 0 0.189 0.246 6.227 31.429 28.571 LGA I 29 I 29 3.536 0 0.274 1.137 7.512 38.810 34.702 LGA Y 30 Y 30 3.874 0 0.053 1.263 15.276 48.333 19.683 LGA D 31 D 31 3.454 0 0.314 0.824 5.626 42.024 35.536 LGA K 32 K 32 3.774 0 0.573 1.297 6.524 45.000 35.503 LGA T 33 T 33 3.844 0 0.660 0.649 5.755 40.476 36.871 LGA K 34 K 34 2.309 0 0.162 0.884 3.480 66.786 63.386 LGA K 35 K 35 1.396 0 0.234 0.797 3.536 72.976 67.249 LGA Y 36 Y 36 1.522 0 0.157 1.482 8.394 77.143 50.595 LGA W 37 W 37 1.435 0 0.140 0.260 3.875 83.690 65.646 LGA V 38 V 38 1.461 0 0.076 0.219 2.334 72.976 71.769 LGA Y 39 Y 39 2.503 0 0.075 0.367 2.949 62.976 59.087 LGA Q 40 Q 40 3.454 0 0.057 0.449 6.350 53.571 38.095 LGA G 41 G 41 1.275 0 0.159 0.159 2.027 81.786 81.786 LGA K 42 K 42 0.305 0 0.082 0.317 1.717 95.238 86.772 LGA P 43 P 43 0.209 0 0.097 0.287 0.866 100.000 95.918 LGA V 44 V 44 0.427 0 0.088 0.164 1.201 92.976 90.612 LGA M 45 M 45 2.058 0 0.094 1.281 6.911 68.929 49.583 LGA P 46 P 46 1.952 0 0.087 0.234 2.536 64.881 65.986 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 10.558 10.621 11.804 35.874 31.212 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 18 2.48 45.000 42.363 0.699 LGA_LOCAL RMSD: 2.477 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.863 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 10.558 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.207886 * X + -0.251907 * Y + 0.945159 * Z + 40.175682 Y_new = -0.887346 * X + 0.358014 * Y + 0.290590 * Z + -76.507469 Z_new = -0.411582 * X + -0.899093 * Y + -0.149103 * Z + 9.450218 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.340668 0.424190 -1.735137 [DEG: -76.8146 24.3043 -99.4160 ] ZXZ: 1.869074 1.720457 -2.712292 [DEG: 107.0901 98.5749 -155.4029 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS307_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS307_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 18 2.48 42.363 10.56 REMARK ---------------------------------------------------------- MOLECULE T0548TS307_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3l2q_A ATOM 87 N HIS 12 -60.397 -6.308 25.667 1.00 0.00 N ATOM 88 CA HIS 12 -59.795 -5.381 26.539 1.00 0.00 C ATOM 89 C HIS 12 -60.396 -4.010 26.522 1.00 0.00 C ATOM 90 O HIS 12 -59.709 -2.995 26.227 1.00 0.00 O ATOM 91 CB HIS 12 -58.292 -5.218 26.363 1.00 0.00 C ATOM 92 CG HIS 12 -57.515 -6.454 26.576 1.00 0.00 C ATOM 93 ND1 HIS 12 -57.353 -7.142 27.721 1.00 0.00 N ATOM 94 CD2 HIS 12 -56.878 -7.103 25.531 1.00 0.00 C ATOM 95 CE1 HIS 12 -56.645 -8.205 27.405 1.00 0.00 C ATOM 96 NE2 HIS 12 -56.369 -8.173 26.098 1.00 0.00 N ATOM 97 N PHE 13 -61.729 -3.962 26.736 1.00 0.00 N ATOM 98 CA PHE 13 -62.351 -2.683 26.839 1.00 0.00 C ATOM 99 C PHE 13 -61.925 -2.133 28.205 1.00 0.00 C ATOM 100 O PHE 13 -61.968 -2.788 29.250 1.00 0.00 O ATOM 101 CB PHE 13 -63.889 -2.718 26.595 1.00 0.00 C ATOM 102 CG PHE 13 -64.474 -1.360 26.495 1.00 0.00 C ATOM 103 CD1 PHE 13 -63.951 -0.426 25.635 1.00 0.00 C ATOM 104 CD2 PHE 13 -65.603 -1.041 27.235 1.00 0.00 C ATOM 105 CE1 PHE 13 -64.550 0.812 25.510 1.00 0.00 C ATOM 106 CE2 PHE 13 -66.202 0.198 27.114 1.00 0.00 C ATOM 107 CZ PHE 13 -65.675 1.126 26.247 1.00 0.00 C ATOM 108 N HIS 14 -61.187 -1.102 28.087 1.00 0.00 N ATOM 109 CA HIS 14 -60.631 -0.330 29.135 1.00 0.00 C ATOM 110 C HIS 14 -61.695 0.753 29.322 1.00 0.00 C ATOM 111 O HIS 14 -62.750 0.389 29.844 1.00 0.00 O ATOM 112 CB HIS 14 -59.297 0.152 28.670 1.00 0.00 C ATOM 113 CG HIS 14 -59.040 0.846 27.398 1.00 0.00 C ATOM 114 ND1 HIS 14 -58.751 2.168 27.162 1.00 0.00 N ATOM 115 CD2 HIS 14 -59.033 0.284 26.180 1.00 0.00 C ATOM 116 CE1 HIS 14 -58.622 2.449 25.917 1.00 0.00 C ATOM 117 NE2 HIS 14 -58.788 1.302 25.274 1.00 0.00 N ATOM 118 N TYR 15 -61.365 2.018 29.358 1.00 0.00 N ATOM 119 CA TYR 15 -62.326 3.130 29.446 1.00 0.00 C ATOM 120 C TYR 15 -62.777 3.473 30.885 1.00 0.00 C ATOM 121 O TYR 15 -63.492 4.480 31.039 1.00 0.00 O ATOM 122 CB TYR 15 -63.600 2.817 28.605 1.00 0.00 C ATOM 123 CG TYR 15 -64.647 3.926 28.718 1.00 0.00 C ATOM 124 CD1 TYR 15 -64.415 5.145 28.090 1.00 0.00 C ATOM 125 CD2 TYR 15 -65.836 3.731 29.421 1.00 0.00 C ATOM 126 CE1 TYR 15 -65.361 6.169 28.156 1.00 0.00 C ATOM 127 CE2 TYR 15 -66.787 4.753 29.494 1.00 0.00 C ATOM 128 CZ TYR 15 -66.553 5.975 28.855 1.00 0.00 C ATOM 129 OH TYR 15 -67.502 6.992 28.872 1.00 0.00 H ATOM 130 N THR 16 -62.234 2.892 31.923 1.00 0.00 N ATOM 131 CA THR 16 -62.488 3.316 33.245 1.00 0.00 C ATOM 132 C THR 16 -61.169 3.895 33.798 1.00 0.00 C ATOM 133 O THR 16 -60.509 3.302 34.681 1.00 0.00 O ATOM 134 CB THR 16 -63.090 2.123 34.045 1.00 0.00 C ATOM 135 OG1 THR 16 -64.300 1.608 33.629 1.00 0.00 O ATOM 136 CG2 THR 16 -63.243 2.537 35.568 1.00 0.00 C ATOM 137 N VAL 17 -61.004 5.218 33.602 1.00 0.00 N ATOM 138 CA VAL 17 -59.826 5.953 34.037 1.00 0.00 C ATOM 139 C VAL 17 -58.484 5.198 33.681 1.00 0.00 C ATOM 140 O VAL 17 -57.418 5.630 34.103 1.00 0.00 O ATOM 141 CB VAL 17 -59.937 6.219 35.564 1.00 0.00 C ATOM 142 CG1 VAL 17 -58.594 6.701 36.198 1.00 0.00 C ATOM 143 CG2 VAL 17 -60.926 7.284 35.946 1.00 0.00 C ATOM 144 N THR 18 -58.480 4.462 32.558 1.00 0.00 N ATOM 145 CA THR 18 -57.273 3.646 32.225 1.00 0.00 C ATOM 146 C THR 18 -56.672 4.003 30.867 1.00 0.00 C ATOM 147 O THR 18 -55.556 3.500 30.620 1.00 0.00 O ATOM 148 CB THR 18 -57.575 2.132 32.376 1.00 0.00 C ATOM 149 OG1 THR 18 -58.396 1.661 31.260 1.00 0.00 O ATOM 150 CG2 THR 18 -58.236 1.843 33.731 1.00 0.00 C ATOM 151 N ASP 19 -57.123 5.066 30.169 1.00 0.00 N ATOM 152 CA ASP 19 -56.591 5.363 28.856 1.00 0.00 C ATOM 153 C ASP 19 -55.838 6.722 28.976 1.00 0.00 C ATOM 154 O ASP 19 -56.439 7.793 28.827 1.00 0.00 O ATOM 155 CB ASP 19 -57.762 5.365 27.859 1.00 0.00 C ATOM 156 CG ASP 19 -57.334 5.357 26.382 1.00 0.00 C ATOM 157 OD1 ASP 19 -56.166 5.164 26.023 1.00 0.00 O ATOM 158 OD2 ASP 19 -58.252 5.505 25.581 1.00 0.00 O ATOM 159 N ILE 20 -54.496 6.552 28.981 1.00 0.00 N ATOM 160 CA ILE 20 -53.635 7.720 29.185 1.00 0.00 C ATOM 161 C ILE 20 -53.176 8.346 27.818 1.00 0.00 C ATOM 162 O ILE 20 -52.336 9.247 27.863 1.00 0.00 O ATOM 163 CB ILE 20 -52.455 7.372 30.125 1.00 0.00 C ATOM 164 CG1 ILE 20 -52.510 8.157 31.428 1.00 0.00 C ATOM 165 CG2 ILE 20 -51.094 7.467 29.397 1.00 0.00 C ATOM 166 CD1 ILE 20 -53.661 7.734 32.348 1.00 0.00 C ATOM 167 N LYS 21 -53.826 8.079 26.681 1.00 0.00 N ATOM 168 CA LYS 21 -53.301 8.689 25.456 1.00 0.00 C ATOM 169 C LYS 21 -51.822 8.233 25.269 1.00 0.00 C ATOM 170 O LYS 21 -50.881 9.016 25.522 1.00 0.00 O ATOM 171 CB LYS 21 -53.398 10.200 25.440 1.00 0.00 C ATOM 172 CG LYS 21 -54.502 10.966 26.032 1.00 0.00 C ATOM 173 CD LYS 21 -55.755 10.888 25.130 1.00 0.00 C ATOM 174 CE LYS 21 -56.975 10.816 26.053 1.00 0.00 C ATOM 175 NZ LYS 21 -58.110 10.219 25.310 1.00 0.00 N ATOM 176 N ASP 22 -51.651 7.058 24.714 1.00 0.00 N ATOM 177 CA ASP 22 -50.376 6.368 24.521 1.00 0.00 C ATOM 178 C ASP 22 -49.813 5.818 25.863 1.00 0.00 C ATOM 179 O ASP 22 -49.113 6.532 26.604 1.00 0.00 O ATOM 180 CB ASP 22 -49.340 7.281 23.857 1.00 0.00 C ATOM 181 CG ASP 22 -49.488 7.453 22.380 1.00 0.00 C ATOM 182 OD1 ASP 22 -48.806 8.366 21.845 1.00 0.00 O ATOM 183 OD2 ASP 22 -50.276 6.715 21.776 1.00 0.00 O ATOM 184 N LEU 23 -50.545 4.814 26.343 1.00 0.00 N ATOM 185 CA LEU 23 -50.146 3.996 27.532 1.00 0.00 C ATOM 186 C LEU 23 -49.509 2.597 27.194 1.00 0.00 C ATOM 187 O LEU 23 -49.064 1.950 28.126 1.00 0.00 O ATOM 188 CB LEU 23 -51.301 3.769 28.494 1.00 0.00 C ATOM 189 CG LEU 23 -51.209 4.654 29.713 1.00 0.00 C ATOM 190 CD1 LEU 23 -52.415 4.469 30.621 1.00 0.00 C ATOM 191 CD2 LEU 23 -49.927 4.315 30.456 1.00 0.00 C ATOM 192 N THR 24 -49.272 2.326 25.921 1.00 0.00 N ATOM 193 CA THR 24 -48.614 1.130 25.396 1.00 0.00 C ATOM 194 C THR 24 -49.442 -0.175 25.482 1.00 0.00 C ATOM 195 O THR 24 -49.713 -0.707 24.399 1.00 0.00 O ATOM 196 CB THR 24 -47.235 0.891 26.083 1.00 0.00 C ATOM 197 OG1 THR 24 -46.291 1.983 25.955 1.00 0.00 O ATOM 198 CG2 THR 24 -46.513 -0.380 25.626 1.00 0.00 C ATOM 199 N LYS 25 -49.901 -0.599 26.689 1.00 0.00 N ATOM 200 CA LYS 25 -50.731 -1.769 26.780 1.00 0.00 C ATOM 201 C LYS 25 -50.168 -2.989 26.000 1.00 0.00 C ATOM 202 O LYS 25 -50.990 -3.663 25.371 1.00 0.00 O ATOM 203 CB LYS 25 -52.164 -1.395 26.355 1.00 0.00 C ATOM 204 CG LYS 25 -52.740 -0.311 27.184 1.00 0.00 C ATOM 205 CD LYS 25 -52.856 -0.638 28.674 1.00 0.00 C ATOM 206 CE LYS 25 -53.291 0.481 29.521 1.00 0.00 C ATOM 207 NZ LYS 25 -52.288 1.544 29.836 1.00 0.00 N ATOM 208 N LEU 26 -48.889 -3.375 26.129 1.00 0.00 N ATOM 209 CA LEU 26 -48.490 -4.589 25.435 1.00 0.00 C ATOM 210 C LEU 26 -48.586 -5.709 26.480 1.00 0.00 C ATOM 211 O LEU 26 -47.722 -5.839 27.366 1.00 0.00 O ATOM 212 CB LEU 26 -47.113 -4.491 24.762 1.00 0.00 C ATOM 213 CG LEU 26 -46.599 -5.659 23.899 1.00 0.00 C ATOM 214 CD1 LEU 26 -47.446 -5.904 22.658 1.00 0.00 C ATOM 215 CD2 LEU 26 -45.269 -5.240 23.368 1.00 0.00 C ATOM 216 N GLY 27 -49.749 -6.349 26.446 1.00 0.00 N ATOM 217 CA GLY 27 -49.928 -7.460 27.296 1.00 0.00 C ATOM 218 C GLY 27 -49.012 -8.543 26.738 1.00 0.00 C ATOM 219 O GLY 27 -49.144 -8.813 25.512 1.00 0.00 O ATOM 220 N ALA 28 -48.360 -9.346 27.568 1.00 0.00 N ATOM 221 CA ALA 28 -47.574 -10.388 26.980 1.00 0.00 C ATOM 222 C ALA 28 -48.442 -11.623 27.006 1.00 0.00 C ATOM 223 O ALA 28 -48.722 -12.179 28.103 1.00 0.00 O ATOM 224 CB ALA 28 -46.286 -10.587 27.775 1.00 0.00 C ATOM 225 N ILE 29 -49.066 -11.875 25.839 1.00 0.00 N ATOM 226 CA ILE 29 -49.998 -12.982 25.821 1.00 0.00 C ATOM 227 C ILE 29 -49.229 -14.271 25.546 1.00 0.00 C ATOM 228 O ILE 29 -49.105 -14.633 24.349 1.00 0.00 O ATOM 229 CB ILE 29 -51.111 -12.782 24.772 1.00 0.00 C ATOM 230 CG1 ILE 29 -51.939 -11.505 24.961 1.00 0.00 C ATOM 231 CG2 ILE 29 -52.127 -13.968 24.768 1.00 0.00 C ATOM 232 CD1 ILE 29 -52.773 -11.247 23.682 1.00 0.00 C ATOM 233 N TYR 30 -48.495 -14.728 26.533 1.00 0.00 N ATOM 234 CA TYR 30 -47.833 -15.976 26.385 1.00 0.00 C ATOM 235 C TYR 30 -48.592 -16.946 27.303 1.00 0.00 C ATOM 236 O TYR 30 -48.578 -16.815 28.537 1.00 0.00 O ATOM 237 CB TYR 30 -46.347 -15.865 26.765 1.00 0.00 C ATOM 238 CG TYR 30 -45.557 -14.881 25.969 1.00 0.00 C ATOM 239 CD1 TYR 30 -44.869 -15.280 24.822 1.00 0.00 C ATOM 240 CD2 TYR 30 -45.455 -13.545 26.363 1.00 0.00 C ATOM 241 CE1 TYR 30 -44.109 -14.370 24.079 1.00 0.00 C ATOM 242 CE2 TYR 30 -44.697 -12.625 25.628 1.00 0.00 C ATOM 243 CZ TYR 30 -44.030 -13.044 24.487 1.00 0.00 C ATOM 244 OH TYR 30 -43.281 -12.147 23.756 1.00 0.00 H ATOM 245 N ASP 31 -49.457 -17.731 26.668 1.00 0.00 N ATOM 246 CA ASP 31 -50.354 -18.646 27.340 1.00 0.00 C ATOM 247 C ASP 31 -49.619 -19.745 28.141 1.00 0.00 C ATOM 248 O ASP 31 -48.388 -19.721 28.233 1.00 0.00 O ATOM 249 CB ASP 31 -51.274 -19.244 26.277 1.00 0.00 C ATOM 250 CG ASP 31 -50.683 -19.935 25.098 1.00 0.00 C ATOM 251 OD1 ASP 31 -49.997 -20.961 25.255 1.00 0.00 O ATOM 252 OD2 ASP 31 -50.838 -19.546 23.930 1.00 0.00 O ATOM 253 N LYS 32 -50.354 -20.278 29.125 1.00 0.00 N ATOM 254 CA LYS 32 -49.887 -21.309 30.032 1.00 0.00 C ATOM 255 C LYS 32 -50.855 -22.523 30.013 1.00 0.00 C ATOM 256 O LYS 32 -52.026 -22.422 30.437 1.00 0.00 O ATOM 257 CB LYS 32 -49.851 -20.714 31.430 1.00 0.00 C ATOM 258 CG LYS 32 -49.235 -21.592 32.483 1.00 0.00 C ATOM 259 CD LYS 32 -49.082 -20.869 33.820 1.00 0.00 C ATOM 260 CE LYS 32 -50.331 -20.893 34.685 1.00 0.00 C ATOM 261 NZ LYS 32 -50.016 -20.338 35.991 1.00 0.00 N ATOM 262 N THR 33 -50.262 -23.698 29.808 1.00 0.00 N ATOM 263 CA THR 33 -50.911 -25.011 29.838 1.00 0.00 C ATOM 264 C THR 33 -49.849 -26.096 30.161 1.00 0.00 C ATOM 265 O THR 33 -48.777 -26.091 29.539 1.00 0.00 O ATOM 266 CB THR 33 -51.605 -25.279 28.481 1.00 0.00 C ATOM 267 OG1 THR 33 -52.654 -24.382 28.129 1.00 0.00 O ATOM 268 CG2 THR 33 -52.211 -26.718 28.424 1.00 0.00 C ATOM 269 N LYS 34 -50.259 -27.130 30.930 1.00 0.00 N ATOM 270 CA LYS 34 -49.346 -28.189 31.414 1.00 0.00 C ATOM 271 C LYS 34 -48.119 -27.662 32.234 1.00 0.00 C ATOM 272 O LYS 34 -47.148 -28.418 32.379 1.00 0.00 O ATOM 273 CB LYS 34 -48.876 -28.999 30.197 1.00 0.00 C ATOM 274 CG LYS 34 -50.059 -29.669 29.498 1.00 0.00 C ATOM 275 CD LYS 34 -49.696 -30.139 28.082 1.00 0.00 C ATOM 276 CE LYS 34 -50.519 -29.379 27.009 1.00 0.00 C ATOM 277 NZ LYS 34 -50.088 -29.781 25.665 1.00 0.00 N ATOM 278 N LYS 35 -48.344 -26.643 33.090 1.00 0.00 N ATOM 279 CA LYS 35 -47.316 -25.968 33.869 1.00 0.00 C ATOM 280 C LYS 35 -46.091 -25.535 32.986 1.00 0.00 C ATOM 281 O LYS 35 -44.907 -25.603 33.426 1.00 0.00 O ATOM 282 CB LYS 35 -46.809 -26.867 34.976 1.00 0.00 C ATOM 283 CG LYS 35 -47.783 -27.319 36.001 1.00 0.00 C ATOM 284 CD LYS 35 -48.441 -26.135 36.694 1.00 0.00 C ATOM 285 CE LYS 35 -49.037 -26.555 38.059 1.00 0.00 C ATOM 286 NZ LYS 35 -50.058 -27.596 37.886 1.00 0.00 N ATOM 287 N TYR 36 -46.324 -25.047 31.795 1.00 0.00 N ATOM 288 CA TYR 36 -45.289 -24.684 30.803 1.00 0.00 C ATOM 289 C TYR 36 -45.811 -23.479 30.018 1.00 0.00 C ATOM 290 O TYR 36 -46.842 -23.581 29.315 1.00 0.00 O ATOM 291 CB TYR 36 -44.945 -25.809 29.822 1.00 0.00 C ATOM 292 CG TYR 36 -44.548 -27.091 30.474 1.00 0.00 C ATOM 293 CD1 TYR 36 -43.413 -27.155 31.305 1.00 0.00 C ATOM 294 CD2 TYR 36 -45.262 -28.285 30.249 1.00 0.00 C ATOM 295 CE1 TYR 36 -43.032 -28.375 31.878 1.00 0.00 C ATOM 296 CE2 TYR 36 -44.876 -29.499 30.824 1.00 0.00 C ATOM 297 CZ TYR 36 -43.769 -29.536 31.643 1.00 0.00 C ATOM 298 OH TYR 36 -43.333 -30.677 32.234 1.00 0.00 H ATOM 299 N TRP 37 -45.043 -22.399 30.014 1.00 0.00 N ATOM 300 CA TRP 37 -45.396 -21.200 29.276 1.00 0.00 C ATOM 301 C TRP 37 -45.243 -21.459 27.752 1.00 0.00 C ATOM 302 O TRP 37 -44.137 -21.754 27.269 1.00 0.00 O ATOM 303 CB TRP 37 -44.475 -20.093 29.735 1.00 0.00 C ATOM 304 CG TRP 37 -44.822 -19.462 31.025 1.00 0.00 C ATOM 305 CD1 TRP 37 -44.158 -19.882 32.148 1.00 0.00 C ATOM 306 CD2 TRP 37 -45.788 -18.524 31.315 1.00 0.00 C ATOM 307 NE1 TRP 37 -44.703 -19.226 33.142 1.00 0.00 N ATOM 308 CE2 TRP 37 -45.673 -18.421 32.689 1.00 0.00 C ATOM 309 CE3 TRP 37 -46.734 -17.791 30.633 1.00 0.00 C ATOM 310 CZ2 TRP 37 -46.461 -17.594 33.445 1.00 0.00 C ATOM 311 CZ3 TRP 37 -47.537 -16.959 31.370 1.00 0.00 C ATOM 312 CH2 TRP 37 -47.410 -16.861 32.750 1.00 0.00 H ATOM 313 N VAL 38 -46.322 -21.276 26.999 1.00 0.00 N ATOM 314 CA VAL 38 -46.398 -21.470 25.560 1.00 0.00 C ATOM 315 C VAL 38 -46.865 -20.185 24.842 1.00 0.00 C ATOM 316 O VAL 38 -47.456 -19.298 25.460 1.00 0.00 O ATOM 317 CB VAL 38 -47.378 -22.592 25.204 1.00 0.00 C ATOM 318 CG1 VAL 38 -47.443 -22.841 23.669 1.00 0.00 C ATOM 319 CG2 VAL 38 -46.996 -23.875 25.903 1.00 0.00 C ATOM 320 N TYR 39 -46.322 -19.944 23.647 1.00 0.00 N ATOM 321 CA TYR 39 -46.705 -18.806 22.853 1.00 0.00 C ATOM 322 C TYR 39 -46.709 -19.197 21.362 1.00 0.00 C ATOM 323 O TYR 39 -45.678 -19.568 20.791 1.00 0.00 O ATOM 324 CB TYR 39 -45.687 -17.676 23.109 1.00 0.00 C ATOM 325 CG TYR 39 -45.639 -16.513 22.154 1.00 0.00 C ATOM 326 CD1 TYR 39 -46.768 -15.763 21.908 1.00 0.00 C ATOM 327 CD2 TYR 39 -44.437 -16.236 21.534 1.00 0.00 C ATOM 328 CE1 TYR 39 -46.692 -14.704 21.028 1.00 0.00 C ATOM 329 CE2 TYR 39 -44.356 -15.187 20.655 1.00 0.00 C ATOM 330 CZ TYR 39 -45.488 -14.434 20.408 1.00 0.00 C ATOM 331 OH TYR 39 -45.422 -13.384 19.519 1.00 0.00 H ATOM 332 N GLN 40 -47.844 -18.949 20.737 1.00 0.00 N ATOM 333 CA GLN 40 -48.124 -19.252 19.335 1.00 0.00 C ATOM 334 C GLN 40 -47.785 -20.735 18.913 1.00 0.00 C ATOM 335 O GLN 40 -47.337 -20.949 17.782 1.00 0.00 O ATOM 336 CB GLN 40 -47.341 -18.261 18.462 1.00 0.00 C ATOM 337 CG GLN 40 -47.776 -16.818 18.632 1.00 0.00 C ATOM 338 CD GLN 40 -46.962 -15.974 17.675 1.00 0.00 C ATOM 339 OE1 GLN 40 -45.731 -15.883 17.750 1.00 0.00 O ATOM 340 NE2 GLN 40 -47.633 -15.372 16.701 1.00 0.00 N ATOM 341 N GLY 41 -48.018 -21.762 19.744 1.00 0.00 N ATOM 342 CA GLY 41 -47.811 -23.178 19.332 1.00 0.00 C ATOM 343 C GLY 41 -46.624 -23.924 19.914 1.00 0.00 C ATOM 344 O GLY 41 -46.652 -25.135 19.888 1.00 0.00 O ATOM 345 N LYS 42 -45.527 -23.288 20.353 1.00 0.00 N ATOM 346 CA LYS 42 -44.404 -24.129 20.793 1.00 0.00 C ATOM 347 C LYS 42 -43.959 -23.901 22.267 1.00 0.00 C ATOM 348 O LYS 42 -43.864 -22.702 22.633 1.00 0.00 O ATOM 349 CB LYS 42 -43.208 -23.732 19.877 1.00 0.00 C ATOM 350 CG LYS 42 -43.397 -23.320 18.395 1.00 0.00 C ATOM 351 CD LYS 42 -42.329 -24.018 17.566 1.00 0.00 C ATOM 352 CE LYS 42 -42.520 -24.193 16.149 1.00 0.00 C ATOM 353 NZ LYS 42 -41.962 -25.364 15.506 1.00 0.00 N ATOM 354 N PRO 43 -43.947 -24.832 23.273 1.00 0.00 N ATOM 355 CA PRO 43 -43.440 -24.421 24.539 1.00 0.00 C ATOM 356 C PRO 43 -41.968 -23.824 24.503 1.00 0.00 C ATOM 357 O PRO 43 -41.090 -24.304 23.808 1.00 0.00 O ATOM 358 CB PRO 43 -43.463 -25.583 25.561 1.00 0.00 C ATOM 359 CG PRO 43 -43.388 -26.760 24.554 1.00 0.00 C ATOM 360 CD PRO 43 -44.090 -26.340 23.255 1.00 0.00 C ATOM 361 N VAL 44 -41.830 -22.693 25.263 1.00 0.00 N ATOM 362 CA VAL 44 -40.568 -21.942 25.529 1.00 0.00 C ATOM 363 C VAL 44 -40.135 -22.362 26.948 1.00 0.00 C ATOM 364 O VAL 44 -40.792 -21.954 27.920 1.00 0.00 O ATOM 365 CB VAL 44 -40.794 -20.431 25.420 1.00 0.00 C ATOM 366 CG1 VAL 44 -39.493 -19.609 25.550 1.00 0.00 C ATOM 367 CG2 VAL 44 -41.518 -20.032 24.152 1.00 0.00 C ATOM 368 N MET 45 -38.926 -22.896 27.104 1.00 0.00 N ATOM 369 CA MET 45 -38.564 -23.458 28.429 1.00 0.00 C ATOM 370 C MET 45 -37.622 -22.542 29.293 1.00 0.00 C ATOM 371 O MET 45 -36.711 -21.928 28.656 1.00 0.00 O ATOM 372 CB MET 45 -37.809 -24.775 28.187 1.00 0.00 C ATOM 373 CG MET 45 -38.676 -26.027 27.838 1.00 0.00 C ATOM 374 SD MET 45 -39.957 -26.321 29.111 1.00 0.00 S ATOM 375 CE MET 45 -38.992 -26.702 30.543 1.00 0.00 C ATOM 376 N PRO 46 -37.655 -22.435 30.698 1.00 0.00 N ATOM 377 CA PRO 46 -36.731 -21.485 31.273 1.00 0.00 C ATOM 378 C PRO 46 -35.207 -21.530 30.829 1.00 0.00 C ATOM 379 O PRO 46 -34.735 -22.540 30.293 1.00 0.00 O ATOM 380 CB PRO 46 -36.902 -21.512 32.767 1.00 0.00 C ATOM 381 CG PRO 46 -37.741 -22.732 33.030 1.00 0.00 C ATOM 382 CD PRO 46 -37.868 -23.510 31.713 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 78.34 41.2 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 74.12 38.2 34 100.0 34 ARMSMC SURFACE . . . . . . . . 79.96 37.5 56 100.0 56 ARMSMC BURIED . . . . . . . . 70.23 58.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.79 34.4 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 91.07 27.6 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 88.28 41.2 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 91.12 25.9 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 58.12 80.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.47 40.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 68.19 38.1 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 61.33 46.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 77.66 36.4 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 44.54 66.7 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 59.48 50.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 61.13 57.1 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 79.06 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 59.48 50.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.39 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 91.39 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 129.78 0.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 91.39 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.56 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.56 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.3017 CRMSCA SECONDARY STRUCTURE . . 8.54 17 100.0 17 CRMSCA SURFACE . . . . . . . . 10.63 29 100.0 29 CRMSCA BURIED . . . . . . . . 10.23 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.71 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 8.70 85 100.0 85 CRMSMC SURFACE . . . . . . . . 10.82 143 100.0 143 CRMSMC BURIED . . . . . . . . 10.19 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.80 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 12.90 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 10.09 84 100.0 84 CRMSSC SURFACE . . . . . . . . 12.29 127 100.0 127 CRMSSC BURIED . . . . . . . . 14.83 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.82 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 9.47 152 100.0 152 CRMSALL SURFACE . . . . . . . . 11.57 243 100.0 243 CRMSALL BURIED . . . . . . . . 12.90 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.939 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 8.171 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 9.974 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 9.770 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.061 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 8.294 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 10.121 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 9.777 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.780 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 11.831 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 9.467 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 11.301 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 13.877 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.942 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 8.939 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 10.712 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 11.995 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 3 21 35 35 DISTCA CA (P) 0.00 0.00 0.00 8.57 60.00 35 DISTCA CA (RMS) 0.00 0.00 0.00 4.66 7.83 DISTCA ALL (N) 0 1 7 17 138 296 296 DISTALL ALL (P) 0.00 0.34 2.36 5.74 46.62 296 DISTALL ALL (RMS) 0.00 1.87 2.41 3.73 7.59 DISTALL END of the results output