####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS304_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS304_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 16 - 35 4.95 12.00 LONGEST_CONTINUOUS_SEGMENT: 20 17 - 36 4.71 12.07 LCS_AVERAGE: 51.92 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 16 - 27 1.53 10.69 LCS_AVERAGE: 25.71 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 17 - 27 0.81 10.78 LCS_AVERAGE: 18.53 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 3 17 3 3 3 3 3 3 4 4 4 15 15 16 16 16 16 16 17 17 17 19 LCS_GDT F 13 F 13 6 7 17 3 3 5 6 6 7 9 10 12 15 15 16 16 16 16 20 21 22 23 23 LCS_GDT H 14 H 14 6 7 17 4 5 5 6 6 7 9 10 12 15 15 17 18 18 19 20 21 22 23 23 LCS_GDT Y 15 Y 15 6 7 17 4 5 5 6 6 7 9 12 12 15 15 17 18 18 19 20 21 22 23 24 LCS_GDT T 16 T 16 6 12 20 4 5 5 6 10 12 15 15 15 16 17 18 18 20 21 22 23 24 24 26 LCS_GDT V 17 V 17 11 12 20 4 8 11 12 13 13 15 15 16 16 17 18 20 21 23 23 23 24 24 26 LCS_GDT T 18 T 18 11 12 20 7 8 11 12 13 13 15 15 16 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT D 19 D 19 11 12 20 7 9 11 12 13 13 15 15 16 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT I 20 I 20 11 12 20 7 9 11 12 13 13 15 15 16 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT K 21 K 21 11 12 20 7 9 11 12 13 13 15 15 16 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT D 22 D 22 11 12 20 7 9 11 12 13 13 15 15 16 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT L 23 L 23 11 12 20 7 9 11 12 13 13 15 15 16 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT T 24 T 24 11 12 20 7 9 11 12 13 13 15 15 16 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT K 25 K 25 11 12 20 4 9 11 12 13 13 15 15 16 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT L 26 L 26 11 12 20 4 9 11 12 13 13 15 15 16 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT G 27 G 27 11 12 20 4 9 11 12 13 13 15 15 16 16 17 18 18 20 23 23 23 24 25 26 LCS_GDT A 28 A 28 4 4 20 3 4 4 4 5 6 8 15 16 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT I 29 I 29 4 4 20 3 4 4 4 5 8 10 11 13 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT Y 30 Y 30 4 4 20 3 4 4 4 4 5 8 8 11 14 16 19 20 21 23 23 23 24 25 26 LCS_GDT D 31 D 31 4 4 20 3 4 4 4 5 6 8 8 11 14 16 19 20 20 23 23 23 24 25 26 LCS_GDT K 32 K 32 3 3 20 3 3 4 4 4 5 7 11 11 12 14 15 17 20 21 22 23 24 25 26 LCS_GDT T 33 T 33 4 10 20 3 4 4 5 8 10 10 11 11 14 16 19 20 21 23 23 23 24 25 26 LCS_GDT K 34 K 34 4 10 20 3 4 5 6 8 10 10 11 11 14 16 19 20 21 23 23 23 24 25 26 LCS_GDT K 35 K 35 4 10 20 3 4 4 6 8 10 10 11 15 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT Y 36 Y 36 4 10 20 3 4 4 6 8 12 14 15 16 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT W 37 W 37 4 10 15 3 4 5 6 13 13 15 15 16 16 17 18 18 21 23 23 23 24 25 26 LCS_GDT V 38 V 38 4 10 15 3 4 4 5 7 10 10 11 12 13 16 17 18 18 19 22 23 24 25 26 LCS_GDT Y 39 Y 39 4 10 15 3 4 5 6 8 10 10 11 11 12 15 17 18 18 19 22 23 24 25 26 LCS_GDT Q 40 Q 40 5 10 15 3 4 5 6 8 10 10 11 11 12 12 13 15 18 19 22 23 24 25 26 LCS_GDT G 41 G 41 5 10 15 3 4 5 6 8 10 10 11 11 12 12 13 18 18 19 22 23 24 25 26 LCS_GDT K 42 K 42 5 10 15 3 4 5 6 8 10 10 11 12 13 16 17 18 18 19 22 23 24 25 26 LCS_GDT P 43 P 43 5 7 15 3 4 5 11 11 12 15 15 15 16 17 18 18 21 23 23 23 24 25 26 LCS_GDT V 44 V 44 5 7 15 3 4 11 12 13 13 15 15 16 16 17 19 20 21 23 23 23 24 25 26 LCS_GDT M 45 M 45 4 7 14 3 4 5 6 7 9 14 15 16 16 17 19 20 21 23 23 23 24 24 26 LCS_GDT P 46 P 46 3 7 14 3 4 4 5 7 9 10 11 11 11 12 12 14 16 18 20 22 22 22 23 LCS_AVERAGE LCS_A: 32.05 ( 18.53 25.71 51.92 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 9 11 12 13 13 15 15 16 16 17 19 20 21 23 23 23 24 25 26 GDT PERCENT_AT 20.00 25.71 31.43 34.29 37.14 37.14 42.86 42.86 45.71 45.71 48.57 54.29 57.14 60.00 65.71 65.71 65.71 68.57 71.43 74.29 GDT RMS_LOCAL 0.27 0.71 0.81 1.11 1.26 1.26 1.95 1.95 2.56 2.56 2.95 4.30 8.33 4.78 5.08 5.08 5.09 5.30 6.48 6.16 GDT RMS_ALL_AT 10.79 10.70 10.78 10.77 10.85 10.85 10.66 10.66 11.18 11.18 10.55 11.82 11.82 11.09 11.24 11.24 11.28 11.01 13.06 10.84 # Checking swapping # possible swapping detected: F 13 F 13 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 19.842 0 0.121 0.982 23.059 0.000 0.000 LGA F 13 F 13 17.274 0 0.118 0.827 20.880 0.000 0.000 LGA H 14 H 14 13.603 0 0.356 1.218 14.611 0.000 0.000 LGA Y 15 Y 15 9.262 0 0.055 1.269 14.040 7.143 2.421 LGA T 16 T 16 4.035 0 0.078 0.124 7.069 37.143 30.884 LGA V 17 V 17 2.369 0 0.526 1.391 6.824 72.976 55.102 LGA T 18 T 18 0.916 0 0.055 1.083 1.969 90.595 85.510 LGA D 19 D 19 0.796 0 0.112 0.252 2.544 92.857 79.881 LGA I 20 I 20 1.272 0 0.050 0.103 2.092 83.690 77.262 LGA K 21 K 21 1.121 0 0.023 0.655 2.097 88.214 79.735 LGA D 22 D 22 0.965 0 0.033 1.042 2.568 90.595 83.036 LGA L 23 L 23 1.534 0 0.081 1.384 4.817 79.286 73.274 LGA T 24 T 24 1.091 0 0.048 1.285 2.972 85.952 77.075 LGA K 25 K 25 0.617 0 0.082 1.158 5.891 88.214 72.698 LGA L 26 L 26 1.019 0 0.056 1.405 3.441 85.952 78.690 LGA G 27 G 27 0.425 0 0.270 0.270 3.035 76.786 76.786 LGA A 28 A 28 7.600 0 0.595 0.585 9.748 11.548 9.333 LGA I 29 I 29 11.165 0 0.165 0.190 13.350 0.357 0.179 LGA Y 30 Y 30 14.540 0 0.602 1.114 21.499 0.000 0.000 LGA D 31 D 31 18.538 0 0.584 0.739 22.242 0.000 0.000 LGA K 32 K 32 20.176 0 0.518 1.157 21.141 0.000 0.000 LGA T 33 T 33 18.798 0 0.591 0.902 20.885 0.000 0.000 LGA K 34 K 34 14.334 0 0.715 0.941 16.705 0.000 0.000 LGA K 35 K 35 12.422 0 0.639 0.536 18.994 0.000 0.000 LGA Y 36 Y 36 7.995 0 0.108 1.289 14.988 17.976 6.032 LGA W 37 W 37 2.703 0 0.098 0.241 12.501 45.357 19.082 LGA V 38 V 38 7.303 0 0.358 1.191 10.848 9.881 6.054 LGA Y 39 Y 39 11.452 0 0.066 1.054 20.360 0.357 0.119 LGA Q 40 Q 40 15.997 0 0.417 0.666 21.239 0.000 0.000 LGA G 41 G 41 15.037 0 0.257 0.257 15.286 0.000 0.000 LGA K 42 K 42 8.631 0 0.090 0.812 11.354 9.286 4.339 LGA P 43 P 43 3.036 0 0.086 0.257 5.303 57.262 49.796 LGA V 44 V 44 2.850 0 0.081 1.149 5.715 47.857 49.864 LGA M 45 M 45 8.485 0 0.037 0.997 10.597 5.476 3.869 LGA P 46 P 46 14.917 0 0.044 0.057 17.050 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 9.847 9.637 11.235 33.850 29.172 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 15 1.95 42.143 38.371 0.732 LGA_LOCAL RMSD: 1.949 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.660 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 9.847 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.426647 * X + -0.847430 * Y + -0.315965 * Z + 24.262190 Y_new = 0.797596 * X + 0.517254 * Y + -0.310303 * Z + -90.423073 Z_new = 0.426395 * X + -0.119623 * Y + 0.896592 * Z + 21.466223 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.079608 -0.440503 -0.132636 [DEG: 61.8570 -25.2390 -7.5995 ] ZXZ: -0.794439 0.458783 1.844310 [DEG: -45.5180 26.2863 105.6712 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS304_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS304_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 15 1.95 38.371 9.85 REMARK ---------------------------------------------------------- MOLECULE T0548TS304_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 1pytA ATOM 87 N HIS 12 -29.018 -15.475 36.901 1.00330.16 N ATOM 88 CA HIS 12 -28.309 -14.895 37.994 1.00330.16 C ATOM 89 ND1 HIS 12 -26.441 -12.344 38.798 1.00330.16 N ATOM 90 CG HIS 12 -27.701 -12.749 39.179 1.00330.16 C ATOM 91 CB HIS 12 -28.673 -13.424 38.260 1.00330.16 C ATOM 92 NE2 HIS 12 -26.671 -11.791 40.941 1.00330.16 N ATOM 93 CD2 HIS 12 -27.825 -12.405 40.490 1.00330.16 C ATOM 94 CE1 HIS 12 -25.868 -11.778 39.890 1.00330.16 C ATOM 95 C HIS 12 -28.695 -15.707 39.180 1.00330.16 C ATOM 96 O HIS 12 -29.669 -16.459 39.132 1.00330.16 O ATOM 97 N PHE 13 -27.934 -15.604 40.280 1.00260.75 N ATOM 98 CA PHE 13 -28.313 -16.377 41.420 1.00260.75 C ATOM 99 CB PHE 13 -27.178 -16.613 42.433 1.00260.75 C ATOM 100 CG PHE 13 -27.562 -17.807 43.239 1.00260.75 C ATOM 101 CD1 PHE 13 -27.321 -19.064 42.736 1.00260.75 C ATOM 102 CD2 PHE 13 -28.150 -17.687 44.477 1.00260.75 C ATOM 103 CE1 PHE 13 -27.663 -20.187 43.453 1.00260.75 C ATOM 104 CE2 PHE 13 -28.495 -18.809 45.198 1.00260.75 C ATOM 105 CZ PHE 13 -28.252 -20.062 44.687 1.00260.75 C ATOM 106 C PHE 13 -29.387 -15.578 42.078 1.00260.75 C ATOM 107 O PHE 13 -29.485 -14.373 41.849 1.00260.75 O ATOM 108 N HIS 14 -30.226 -16.221 42.912 1.00276.07 N ATOM 109 CA HIS 14 -31.314 -15.489 43.492 1.00276.07 C ATOM 110 ND1 HIS 14 -28.470 -14.702 45.132 1.00276.07 N ATOM 111 CG HIS 14 -29.828 -14.634 45.362 1.00276.07 C ATOM 112 CB HIS 14 -30.831 -14.275 44.304 1.00276.07 C ATOM 113 NE2 HIS 14 -28.775 -15.217 47.274 1.00276.07 N ATOM 114 CD2 HIS 14 -29.995 -14.951 46.676 1.00276.07 C ATOM 115 CE1 HIS 14 -27.889 -15.055 46.307 1.00276.07 C ATOM 116 C HIS 14 -32.108 -14.986 42.331 1.00276.07 C ATOM 117 O HIS 14 -32.519 -13.828 42.285 1.00276.07 O ATOM 118 N TYR 15 -32.331 -15.887 41.357 1.00346.80 N ATOM 119 CA TYR 15 -32.961 -15.591 40.102 1.00346.80 C ATOM 120 CB TYR 15 -32.608 -16.631 39.030 1.00346.80 C ATOM 121 CG TYR 15 -33.046 -17.942 39.588 1.00346.80 C ATOM 122 CD1 TYR 15 -32.266 -18.589 40.518 1.00346.80 C ATOM 123 CD2 TYR 15 -34.228 -18.524 39.192 1.00346.80 C ATOM 124 CE1 TYR 15 -32.652 -19.798 41.047 1.00346.80 C ATOM 125 CE2 TYR 15 -34.620 -19.733 39.717 1.00346.80 C ATOM 126 CZ TYR 15 -33.834 -20.374 40.646 1.00346.80 C ATOM 127 OH TYR 15 -34.236 -21.616 41.184 1.00346.80 H ATOM 128 C TYR 15 -34.452 -15.591 40.218 1.00346.80 C ATOM 129 O TYR 15 -35.051 -16.471 40.836 1.00346.80 O ATOM 130 N THR 16 -35.081 -14.557 39.623 1.00248.08 N ATOM 131 CA THR 16 -36.509 -14.466 39.531 1.00248.08 C ATOM 132 CB THR 16 -37.041 -13.070 39.676 1.00248.08 C ATOM 133 OG1 THR 16 -36.548 -12.244 38.632 1.00248.08 O ATOM 134 CG2 THR 16 -36.607 -12.514 41.044 1.00248.08 C ATOM 135 C THR 16 -36.846 -14.929 38.150 1.00248.08 C ATOM 136 O THR 16 -35.966 -15.382 37.420 1.00248.08 O ATOM 137 N VAL 17 -38.134 -14.863 37.754 1.00205.35 N ATOM 138 CA VAL 17 -38.453 -15.278 36.418 1.00205.35 C ATOM 139 CB VAL 17 -39.824 -15.896 36.313 1.00205.35 C ATOM 140 CG1 VAL 17 -39.797 -17.238 37.064 1.00205.35 C ATOM 141 CG2 VAL 17 -40.873 -14.926 36.888 1.00205.35 C ATOM 142 C VAL 17 -38.369 -14.072 35.535 1.00205.35 C ATOM 143 O VAL 17 -39.374 -13.519 35.086 1.00205.35 O ATOM 144 N THR 18 -37.129 -13.644 35.242 1.00112.20 N ATOM 145 CA THR 18 -36.898 -12.510 34.401 1.00112.20 C ATOM 146 CB THR 18 -35.461 -12.070 34.402 1.00112.20 C ATOM 147 OG1 THR 18 -35.318 -10.842 33.705 1.00112.20 O ATOM 148 CG2 THR 18 -34.601 -13.162 33.742 1.00112.20 C ATOM 149 C THR 18 -37.274 -12.874 33.003 1.00112.20 C ATOM 150 O THR 18 -37.819 -12.060 32.261 1.00112.20 O ATOM 151 N ASP 19 -37.006 -14.135 32.623 1.00 48.72 N ATOM 152 CA ASP 19 -37.219 -14.590 31.281 1.00 48.72 C ATOM 153 CB ASP 19 -36.806 -16.054 31.054 1.00 48.72 C ATOM 154 CG ASP 19 -35.290 -16.107 31.078 1.00 48.72 C ATOM 155 OD1 ASP 19 -34.662 -15.018 31.136 1.00 48.72 O ATOM 156 OD2 ASP 19 -34.736 -17.237 31.053 1.00 48.72 O ATOM 157 C ASP 19 -38.667 -14.473 30.948 1.00 48.72 C ATOM 158 O ASP 19 -39.030 -14.280 29.789 1.00 48.72 O ATOM 159 N ILE 20 -39.555 -14.613 31.941 1.00 48.80 N ATOM 160 CA ILE 20 -40.935 -14.516 31.583 1.00 48.80 C ATOM 161 CB ILE 20 -41.866 -14.747 32.736 1.00 48.80 C ATOM 162 CG2 ILE 20 -43.299 -14.510 32.225 1.00 48.80 C ATOM 163 CG1 ILE 20 -41.655 -16.149 33.332 1.00 48.80 C ATOM 164 CD1 ILE 20 -42.354 -16.354 34.675 1.00 48.80 C ATOM 165 C ILE 20 -41.211 -13.133 31.065 1.00 48.80 C ATOM 166 O ILE 20 -41.839 -12.974 30.021 1.00 48.80 O ATOM 167 N LYS 21 -40.723 -12.091 31.767 1.00117.80 N ATOM 168 CA LYS 21 -41.064 -10.737 31.416 1.00117.80 C ATOM 169 CB LYS 21 -40.528 -9.701 32.419 1.00117.80 C ATOM 170 CG LYS 21 -39.004 -9.592 32.446 1.00117.80 C ATOM 171 CD LYS 21 -38.490 -8.381 33.225 1.00117.80 C ATOM 172 CE LYS 21 -38.720 -7.047 32.512 1.00117.80 C ATOM 173 NZ LYS 21 -38.205 -5.936 33.345 1.00117.80 N ATOM 174 C LYS 21 -40.556 -10.338 30.063 1.00117.80 C ATOM 175 O LYS 21 -41.307 -9.789 29.258 1.00117.80 O ATOM 176 N ASP 22 -39.274 -10.593 29.746 1.00106.66 N ATOM 177 CA ASP 22 -38.795 -10.111 28.480 1.00106.66 C ATOM 178 CB ASP 22 -37.265 -10.177 28.310 1.00106.66 C ATOM 179 CG ASP 22 -36.788 -11.611 28.414 1.00106.66 C ATOM 180 OD1 ASP 22 -37.496 -12.408 29.076 1.00106.66 O ATOM 181 OD2 ASP 22 -35.710 -11.927 27.842 1.00106.66 O ATOM 182 C ASP 22 -39.476 -10.843 27.374 1.00106.66 C ATOM 183 O ASP 22 -39.708 -10.292 26.299 1.00106.66 O ATOM 184 N LEU 23 -39.818 -12.118 27.619 1.00 70.01 N ATOM 185 CA LEU 23 -40.482 -12.906 26.630 1.00 70.01 C ATOM 186 CB LEU 23 -40.710 -14.363 27.072 1.00 70.01 C ATOM 187 CG LEU 23 -41.424 -15.212 26.004 1.00 70.01 C ATOM 188 CD1 LEU 23 -40.590 -15.296 24.713 1.00 70.01 C ATOM 189 CD2 LEU 23 -41.805 -16.598 26.550 1.00 70.01 C ATOM 190 C LEU 23 -41.824 -12.287 26.362 1.00 70.01 C ATOM 191 O LEU 23 -42.312 -12.344 25.236 1.00 70.01 O ATOM 192 N THR 24 -42.467 -11.691 27.391 1.00112.64 N ATOM 193 CA THR 24 -43.774 -11.109 27.218 1.00112.64 C ATOM 194 CB THR 24 -44.437 -10.613 28.474 1.00112.64 C ATOM 195 OG1 THR 24 -45.844 -10.553 28.272 1.00112.64 O ATOM 196 CG2 THR 24 -43.932 -9.194 28.786 1.00112.64 C ATOM 197 C THR 24 -43.657 -9.945 26.286 1.00112.64 C ATOM 198 O THR 24 -44.601 -9.607 25.576 1.00112.64 O ATOM 199 N LYS 25 -42.488 -9.283 26.276 1.00 93.04 N ATOM 200 CA LYS 25 -42.298 -8.156 25.412 1.00 93.04 C ATOM 201 CB LYS 25 -40.866 -7.598 25.476 1.00 93.04 C ATOM 202 CG LYS 25 -40.539 -6.914 26.803 1.00 93.04 C ATOM 203 CD LYS 25 -41.420 -5.698 27.089 1.00 93.04 C ATOM 204 CE LYS 25 -41.097 -5.009 28.415 1.00 93.04 C ATOM 205 NZ LYS 25 -41.990 -3.847 28.608 1.00 93.04 N ATOM 206 C LYS 25 -42.541 -8.630 24.012 1.00 93.04 C ATOM 207 O LYS 25 -43.054 -7.891 23.175 1.00 93.04 O ATOM 208 N LEU 26 -42.157 -9.886 23.731 1.00173.90 N ATOM 209 CA LEU 26 -42.343 -10.543 22.465 1.00173.90 C ATOM 210 CB LEU 26 -41.717 -11.947 22.446 1.00173.90 C ATOM 211 CG LEU 26 -40.184 -11.922 22.440 1.00173.90 C ATOM 212 CD1 LEU 26 -39.590 -13.336 22.459 1.00173.90 C ATOM 213 CD2 LEU 26 -39.683 -11.098 21.245 1.00173.90 C ATOM 214 C LEU 26 -43.808 -10.724 22.214 1.00173.90 C ATOM 215 O LEU 26 -44.257 -10.740 21.068 1.00173.90 O ATOM 216 N GLY 27 -44.585 -10.889 23.297 1.00 39.72 N ATOM 217 CA GLY 27 -45.992 -11.155 23.220 1.00 39.72 C ATOM 218 C GLY 27 -46.680 -10.043 22.504 1.00 39.72 C ATOM 219 O GLY 27 -47.651 -10.275 21.785 1.00 39.72 O ATOM 220 N ALA 28 -46.193 -8.803 22.676 1.00 36.22 N ATOM 221 CA ALA 28 -46.853 -7.680 22.086 1.00 36.22 C ATOM 222 CB ALA 28 -46.096 -6.360 22.307 1.00 36.22 C ATOM 223 C ALA 28 -46.941 -7.895 20.610 1.00 36.22 C ATOM 224 O ALA 28 -47.974 -7.607 20.008 1.00 36.22 O ATOM 225 N ILE 29 -45.879 -8.426 19.972 1.00125.50 N ATOM 226 CA ILE 29 -45.989 -8.575 18.551 1.00125.50 C ATOM 227 CB ILE 29 -44.681 -8.874 17.867 1.00125.50 C ATOM 228 CG2 ILE 29 -43.754 -7.668 18.088 1.00125.50 C ATOM 229 CG1 ILE 29 -44.082 -10.207 18.344 1.00125.50 C ATOM 230 CD1 ILE 29 -42.812 -10.593 17.587 1.00125.50 C ATOM 231 C ILE 29 -46.972 -9.667 18.259 1.00125.50 C ATOM 232 O ILE 29 -46.742 -10.848 18.522 1.00125.50 O ATOM 233 N TYR 30 -48.111 -9.259 17.671 1.00 50.49 N ATOM 234 CA TYR 30 -49.223 -10.111 17.366 1.00 50.49 C ATOM 235 CB TYR 30 -50.440 -9.318 16.863 1.00 50.49 C ATOM 236 CG TYR 30 -50.817 -8.354 17.933 1.00 50.49 C ATOM 237 CD1 TYR 30 -50.142 -7.161 18.051 1.00 50.49 C ATOM 238 CD2 TYR 30 -51.838 -8.633 18.810 1.00 50.49 C ATOM 239 CE1 TYR 30 -50.479 -6.259 19.034 1.00 50.49 C ATOM 240 CE2 TYR 30 -52.178 -7.734 19.795 1.00 50.49 C ATOM 241 CZ TYR 30 -51.498 -6.545 19.908 1.00 50.49 C ATOM 242 OH TYR 30 -51.847 -5.621 20.917 1.00 50.49 H ATOM 243 C TYR 30 -48.865 -11.072 16.279 1.00 50.49 C ATOM 244 O TYR 30 -49.215 -12.249 16.339 1.00 50.49 O ATOM 245 N ASP 31 -48.127 -10.591 15.263 1.00 85.94 N ATOM 246 CA ASP 31 -47.917 -11.367 14.076 1.00 85.94 C ATOM 247 CB ASP 31 -47.021 -10.663 13.040 1.00 85.94 C ATOM 248 CG ASP 31 -47.840 -9.572 12.358 1.00 85.94 C ATOM 249 OD1 ASP 31 -49.096 -9.673 12.373 1.00 85.94 O ATOM 250 OD2 ASP 31 -47.217 -8.624 11.807 1.00 85.94 O ATOM 251 C ASP 31 -47.298 -12.692 14.383 1.00 85.94 C ATOM 252 O ASP 31 -47.758 -13.708 13.867 1.00 85.94 O ATOM 253 N LYS 32 -46.258 -12.758 15.233 1.00220.82 N ATOM 254 CA LYS 32 -45.699 -14.071 15.396 1.00220.82 C ATOM 255 CB LYS 32 -44.214 -14.055 15.789 1.00220.82 C ATOM 256 CG LYS 32 -43.917 -13.280 17.072 1.00220.82 C ATOM 257 CD LYS 32 -42.535 -13.581 17.646 1.00220.82 C ATOM 258 CE LYS 32 -41.395 -13.051 16.776 1.00220.82 C ATOM 259 NZ LYS 32 -40.102 -13.233 17.474 1.00220.82 N ATOM 260 C LYS 32 -46.441 -14.776 16.476 1.00220.82 C ATOM 261 O LYS 32 -45.842 -15.181 17.469 1.00220.82 O ATOM 262 N THR 33 -47.742 -15.043 16.225 1.00154.68 N ATOM 263 CA THR 33 -48.651 -15.589 17.193 1.00154.68 C ATOM 264 CB THR 33 -49.941 -16.063 16.595 1.00154.68 C ATOM 265 OG1 THR 33 -49.705 -17.134 15.692 1.00154.68 O ATOM 266 CG2 THR 33 -50.605 -14.890 15.859 1.00154.68 C ATOM 267 C THR 33 -48.025 -16.741 17.900 1.00154.68 C ATOM 268 O THR 33 -47.866 -17.835 17.360 1.00154.68 O ATOM 269 N LYS 34 -47.624 -16.477 19.156 1.00 86.47 N ATOM 270 CA LYS 34 -47.000 -17.466 19.972 1.00 86.47 C ATOM 271 CB LYS 34 -46.116 -16.878 21.083 1.00 86.47 C ATOM 272 CG LYS 34 -44.906 -16.089 20.587 1.00 86.47 C ATOM 273 CD LYS 34 -44.280 -15.223 21.679 1.00 86.47 C ATOM 274 CE LYS 34 -43.050 -14.447 21.213 1.00 86.47 C ATOM 275 NZ LYS 34 -41.941 -15.382 20.929 1.00 86.47 N ATOM 276 C LYS 34 -48.100 -18.181 20.671 1.00 86.47 C ATOM 277 O LYS 34 -49.180 -17.628 20.873 1.00 86.47 O ATOM 278 N LYS 35 -47.856 -19.449 21.040 1.00 64.21 N ATOM 279 CA LYS 35 -48.838 -20.149 21.802 1.00 64.21 C ATOM 280 CB LYS 35 -48.708 -21.675 21.671 1.00 64.21 C ATOM 281 CG LYS 35 -48.935 -22.141 20.230 1.00 64.21 C ATOM 282 CD LYS 35 -48.445 -23.562 19.946 1.00 64.21 C ATOM 283 CE LYS 35 -48.645 -23.992 18.493 1.00 64.21 C ATOM 284 NZ LYS 35 -48.052 -25.330 18.276 1.00 64.21 N ATOM 285 C LYS 35 -48.546 -19.740 23.204 1.00 64.21 C ATOM 286 O LYS 35 -47.453 -19.981 23.717 1.00 64.21 O ATOM 287 N TYR 36 -49.527 -19.101 23.863 1.00164.04 N ATOM 288 CA TYR 36 -49.253 -18.523 25.140 1.00164.04 C ATOM 289 CB TYR 36 -50.233 -17.407 25.544 1.00164.04 C ATOM 290 CG TYR 36 -49.995 -16.219 24.679 1.00164.04 C ATOM 291 CD1 TYR 36 -50.549 -16.140 23.422 1.00164.04 C ATOM 292 CD2 TYR 36 -49.222 -15.176 25.134 1.00164.04 C ATOM 293 CE1 TYR 36 -50.329 -15.038 22.627 1.00164.04 C ATOM 294 CE2 TYR 36 -48.998 -14.071 24.345 1.00164.04 C ATOM 295 CZ TYR 36 -49.551 -14.003 23.089 1.00164.04 C ATOM 296 OH TYR 36 -49.321 -12.870 22.280 1.00164.04 H ATOM 297 C TYR 36 -49.295 -19.533 26.231 1.00164.04 C ATOM 298 O TYR 36 -50.238 -20.313 26.360 1.00164.04 O ATOM 299 N TRP 37 -48.212 -19.539 27.029 1.00214.04 N ATOM 300 CA TRP 37 -48.126 -20.303 28.232 1.00214.04 C ATOM 301 CB TRP 37 -47.284 -21.585 28.108 1.00214.04 C ATOM 302 CG TRP 37 -47.925 -22.660 27.261 1.00214.04 C ATOM 303 CD2 TRP 37 -48.788 -23.679 27.785 1.00214.04 C ATOM 304 CD1 TRP 37 -47.833 -22.883 25.918 1.00214.04 C ATOM 305 NE1 TRP 37 -48.589 -23.977 25.570 1.00214.04 N ATOM 306 CE2 TRP 37 -49.183 -24.477 26.712 1.00214.04 C ATOM 307 CE3 TRP 37 -49.218 -23.928 29.059 1.00214.04 C ATOM 308 CZ2 TRP 37 -50.017 -25.542 26.896 1.00214.04 C ATOM 309 CZ3 TRP 37 -50.058 -25.004 29.242 1.00214.04 C ATOM 310 CH2 TRP 37 -50.449 -25.793 28.180 1.00214.04 H ATOM 311 C TRP 37 -47.411 -19.395 29.180 1.00214.04 C ATOM 312 O TRP 37 -46.361 -18.852 28.842 1.00214.04 O ATOM 313 N VAL 38 -47.965 -19.177 30.386 1.00153.37 N ATOM 314 CA VAL 38 -47.269 -18.310 31.287 1.00153.37 C ATOM 315 CB VAL 38 -48.195 -17.353 31.993 1.00153.37 C ATOM 316 CG1 VAL 38 -49.296 -18.150 32.712 1.00153.37 C ATOM 317 CG2 VAL 38 -47.369 -16.449 32.922 1.00153.37 C ATOM 318 C VAL 38 -46.593 -19.171 32.298 1.00153.37 C ATOM 319 O VAL 38 -46.844 -19.078 33.498 1.00153.37 O ATOM 320 N TYR 39 -45.669 -20.027 31.833 1.00109.24 N ATOM 321 CA TYR 39 -44.999 -20.864 32.774 1.00109.24 C ATOM 322 CB TYR 39 -45.509 -22.313 32.805 1.00109.24 C ATOM 323 CG TYR 39 -46.867 -22.248 33.415 1.00109.24 C ATOM 324 CD1 TYR 39 -47.974 -21.977 32.646 1.00109.24 C ATOM 325 CD2 TYR 39 -47.026 -22.448 34.768 1.00109.24 C ATOM 326 CE1 TYR 39 -49.224 -21.917 33.216 1.00109.24 C ATOM 327 CE2 TYR 39 -48.272 -22.389 35.344 1.00109.24 C ATOM 328 CZ TYR 39 -49.373 -22.125 34.567 1.00109.24 C ATOM 329 OH TYR 39 -50.654 -22.064 35.155 1.00109.24 H ATOM 330 C TYR 39 -43.554 -20.874 32.442 1.00109.24 C ATOM 331 O TYR 39 -43.160 -20.796 31.279 1.00109.24 O ATOM 332 N GLN 40 -42.723 -20.954 33.493 1.00156.16 N ATOM 333 CA GLN 40 -41.308 -20.974 33.320 1.00156.16 C ATOM 334 CB GLN 40 -40.592 -21.090 34.672 1.00156.16 C ATOM 335 CG GLN 40 -39.075 -21.190 34.572 1.00156.16 C ATOM 336 CD GLN 40 -38.545 -21.462 35.975 1.00156.16 C ATOM 337 OE1 GLN 40 -37.944 -22.505 36.229 1.00156.16 O ATOM 338 NE2 GLN 40 -38.773 -20.499 36.910 1.00156.16 N ATOM 339 C GLN 40 -40.969 -22.208 32.551 1.00156.16 C ATOM 340 O GLN 40 -40.200 -22.170 31.594 1.00156.16 O ATOM 341 N GLY 41 -41.578 -23.335 32.948 1.00114.97 N ATOM 342 CA GLY 41 -41.275 -24.608 32.373 1.00114.97 C ATOM 343 C GLY 41 -41.672 -24.698 30.934 1.00114.97 C ATOM 344 O GLY 41 -40.935 -25.260 30.127 1.00114.97 O ATOM 345 N LYS 42 -42.853 -24.162 30.574 1.00135.79 N ATOM 346 CA LYS 42 -43.344 -24.343 29.236 1.00135.79 C ATOM 347 CB LYS 42 -44.819 -23.929 29.085 1.00135.79 C ATOM 348 CG LYS 42 -45.484 -24.397 27.790 1.00135.79 C ATOM 349 CD LYS 42 -45.675 -25.913 27.715 1.00135.79 C ATOM 350 CE LYS 42 -46.425 -26.372 26.462 1.00135.79 C ATOM 351 NZ LYS 42 -46.510 -27.848 26.430 1.00135.79 N ATOM 352 C LYS 42 -42.536 -23.527 28.275 1.00135.79 C ATOM 353 O LYS 42 -42.316 -22.332 28.464 1.00135.79 O ATOM 354 N PRO 43 -42.051 -24.187 27.256 1.00 86.94 N ATOM 355 CA PRO 43 -41.327 -23.513 26.211 1.00 86.94 C ATOM 356 CD PRO 43 -41.617 -25.565 27.410 1.00 86.94 C ATOM 357 CB PRO 43 -40.312 -24.521 25.674 1.00 86.94 C ATOM 358 CG PRO 43 -40.857 -25.888 26.117 1.00 86.94 C ATOM 359 C PRO 43 -42.301 -23.073 25.168 1.00 86.94 C ATOM 360 O PRO 43 -43.399 -23.626 25.122 1.00 86.94 O ATOM 361 N VAL 44 -41.944 -22.083 24.326 1.00130.71 N ATOM 362 CA VAL 44 -42.854 -21.717 23.282 1.00130.71 C ATOM 363 CB VAL 44 -43.867 -20.681 23.689 1.00130.71 C ATOM 364 CG1 VAL 44 -44.782 -21.278 24.774 1.00130.71 C ATOM 365 CG2 VAL 44 -43.116 -19.413 24.131 1.00130.71 C ATOM 366 C VAL 44 -42.079 -21.137 22.135 1.00130.71 C ATOM 367 O VAL 44 -41.062 -20.474 22.330 1.00130.71 O ATOM 368 N MET 45 -42.541 -21.410 20.896 1.00120.84 N ATOM 369 CA MET 45 -41.944 -20.842 19.720 1.00120.84 C ATOM 370 CB MET 45 -40.496 -21.300 19.477 1.00120.84 C ATOM 371 CG MET 45 -39.837 -20.639 18.263 1.00120.84 C ATOM 372 SD MET 45 -38.198 -21.304 17.844 1.00120.84 S ATOM 373 CE MET 45 -38.850 -22.852 17.151 1.00120.84 C ATOM 374 C MET 45 -42.743 -21.331 18.558 1.00120.84 C ATOM 375 O MET 45 -42.904 -22.535 18.371 1.00120.84 O ATOM 376 N PRO 46 -43.249 -20.445 17.757 1.00 85.86 N ATOM 377 CA PRO 46 -43.991 -20.922 16.627 1.00 85.86 C ATOM 378 CD PRO 46 -43.828 -19.228 18.305 1.00 85.86 C ATOM 379 CB PRO 46 -44.907 -19.773 16.205 1.00 85.86 C ATOM 380 CG PRO 46 -45.116 -18.979 17.505 1.00 85.86 C ATOM 381 C PRO 46 -43.067 -21.369 15.543 1.00 85.86 C ATOM 382 O PRO 46 -41.902 -20.971 15.545 1.00 85.86 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 71.31 54.4 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 50.57 64.7 34 100.0 34 ARMSMC SURFACE . . . . . . . . 73.49 51.8 56 100.0 56 ARMSMC BURIED . . . . . . . . 60.09 66.7 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.86 25.0 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 91.91 27.6 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 97.75 23.5 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 94.08 25.9 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 98.99 20.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.50 64.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 54.13 76.2 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 57.91 76.9 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 70.80 68.2 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 76.45 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.28 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 90.96 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 117.05 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 97.28 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.65 66.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 70.65 66.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 89.62 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 70.65 66.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.85 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.85 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2813 CRMSCA SECONDARY STRUCTURE . . 7.11 17 100.0 17 CRMSCA SURFACE . . . . . . . . 10.37 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.77 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.81 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 7.27 85 100.0 85 CRMSMC SURFACE . . . . . . . . 10.29 143 100.0 143 CRMSMC BURIED . . . . . . . . 7.10 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.51 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 12.22 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 10.71 84 100.0 84 CRMSSC SURFACE . . . . . . . . 12.89 127 100.0 127 CRMSSC BURIED . . . . . . . . 10.65 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.24 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 9.27 152 100.0 152 CRMSALL SURFACE . . . . . . . . 11.65 243 100.0 243 CRMSALL BURIED . . . . . . . . 9.14 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 130.945 0.860 0.872 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 110.839 0.881 0.891 17 100.0 17 ERRCA SURFACE . . . . . . . . 126.553 0.854 0.867 29 100.0 29 ERRCA BURIED . . . . . . . . 152.172 0.886 0.896 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 131.685 0.860 0.873 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 110.733 0.879 0.889 85 100.0 85 ERRMC SURFACE . . . . . . . . 127.432 0.856 0.868 143 100.0 143 ERRMC BURIED . . . . . . . . 151.958 0.884 0.894 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 144.943 0.839 0.855 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 137.221 0.832 0.850 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 111.762 0.835 0.853 84 100.0 84 ERRSC SURFACE . . . . . . . . 132.417 0.826 0.844 127 100.0 127 ERRSC BURIED . . . . . . . . 199.800 0.896 0.903 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 138.390 0.849 0.864 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 111.358 0.855 0.869 152 100.0 152 ERRALL SURFACE . . . . . . . . 129.699 0.840 0.856 243 100.0 243 ERRALL BURIED . . . . . . . . 178.237 0.892 0.900 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 11 22 35 35 DISTCA CA (P) 0.00 2.86 8.57 31.43 62.86 35 DISTCA CA (RMS) 0.00 1.67 2.39 4.07 5.96 DISTCA ALL (N) 0 3 13 68 151 296 296 DISTALL ALL (P) 0.00 1.01 4.39 22.97 51.01 296 DISTALL ALL (RMS) 0.00 1.81 2.42 3.82 5.93 DISTALL END of the results output