####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS302_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS302_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 31 16 - 46 4.97 6.08 LCS_AVERAGE: 85.96 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 24 - 32 1.78 7.50 LCS_AVERAGE: 21.55 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 18 - 24 0.83 11.97 LCS_AVERAGE: 14.94 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 4 7 23 3 4 4 5 7 8 9 11 12 15 20 22 23 26 28 29 30 31 34 35 LCS_GDT F 13 F 13 6 7 23 3 4 6 6 7 8 9 11 11 14 16 22 23 26 28 29 30 30 34 35 LCS_GDT H 14 H 14 6 7 23 4 5 6 6 7 8 9 11 12 15 20 23 25 26 28 29 31 33 34 35 LCS_GDT Y 15 Y 15 6 7 23 4 5 6 6 7 8 9 11 12 15 20 23 25 26 28 29 31 33 34 35 LCS_GDT T 16 T 16 6 8 31 3 5 6 6 7 8 9 17 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT V 17 V 17 6 8 31 4 5 6 6 7 8 14 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT T 18 T 18 7 8 31 6 6 7 7 11 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT D 19 D 19 7 8 31 6 6 7 7 10 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT I 20 I 20 7 8 31 6 6 7 8 11 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT K 21 K 21 7 8 31 6 6 7 7 7 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT D 22 D 22 7 8 31 6 6 7 7 7 7 12 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT L 23 L 23 7 8 31 6 6 7 7 11 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT T 24 T 24 7 9 31 3 3 7 9 11 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT K 25 K 25 3 9 31 3 3 4 9 11 13 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT L 26 L 26 3 9 31 3 4 5 9 11 12 14 16 20 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT G 27 G 27 5 9 31 3 4 5 7 11 13 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT A 28 A 28 5 9 31 3 4 5 9 11 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT I 29 I 29 5 9 31 3 4 6 9 11 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT Y 30 Y 30 5 9 31 4 5 6 8 11 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT D 31 D 31 5 9 31 3 4 5 9 11 12 16 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT K 32 K 32 4 9 31 3 4 5 9 11 12 13 15 19 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT T 33 T 33 4 5 31 3 4 4 4 7 9 12 13 15 17 20 22 25 27 30 31 31 33 34 35 LCS_GDT K 34 K 34 4 7 31 3 4 4 4 7 8 9 11 15 17 20 22 24 26 29 31 31 33 34 35 LCS_GDT K 35 K 35 5 7 31 4 5 5 5 6 8 9 10 14 17 20 23 25 28 30 31 31 33 34 35 LCS_GDT Y 36 Y 36 5 7 31 4 5 5 5 7 8 9 11 15 17 20 22 25 28 30 31 31 33 34 35 LCS_GDT W 37 W 37 5 7 31 4 5 5 5 7 8 9 11 15 17 20 22 25 28 30 31 31 33 34 35 LCS_GDT V 38 V 38 5 7 31 4 5 5 5 7 8 9 11 15 19 20 24 25 28 30 31 31 33 34 35 LCS_GDT Y 39 Y 39 5 7 31 3 5 5 5 7 8 9 11 15 17 20 22 24 28 30 31 31 33 34 35 LCS_GDT Q 40 Q 40 3 7 31 3 3 4 5 7 8 9 11 15 17 22 24 25 28 30 31 31 33 34 35 LCS_GDT G 41 G 41 4 7 31 3 3 4 6 10 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT K 42 K 42 5 6 31 3 5 6 9 11 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT P 43 P 43 5 6 31 3 5 5 9 11 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT V 44 V 44 5 6 31 4 5 6 8 11 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT M 45 M 45 5 6 31 3 5 5 8 11 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_GDT P 46 P 46 5 6 31 4 5 6 8 11 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 LCS_AVERAGE LCS_A: 40.82 ( 14.94 21.55 85.96 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 6 7 9 11 14 17 19 21 22 23 24 25 28 30 31 31 33 34 35 GDT PERCENT_AT 17.14 17.14 20.00 25.71 31.43 40.00 48.57 54.29 60.00 62.86 65.71 68.57 71.43 80.00 85.71 88.57 88.57 94.29 97.14 100.00 GDT RMS_LOCAL 0.25 0.25 0.83 1.41 1.72 2.20 2.52 2.81 3.02 3.15 3.34 3.51 3.77 4.43 4.79 4.97 4.97 5.36 5.61 5.84 GDT RMS_ALL_AT 11.41 11.41 11.97 7.70 7.39 6.55 6.40 6.18 6.15 6.13 6.05 6.02 6.03 6.35 6.12 6.08 6.08 5.92 5.86 5.84 # Checking swapping # possible swapping detected: Y 15 Y 15 # possible swapping detected: Y 30 Y 30 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 12.773 0 0.070 1.173 15.288 0.357 0.143 LGA F 13 F 13 11.971 0 0.097 0.328 15.182 0.000 0.000 LGA H 14 H 14 9.957 0 0.135 0.301 11.561 3.333 1.857 LGA Y 15 Y 15 8.625 0 0.081 1.278 20.377 4.524 1.508 LGA T 16 T 16 5.204 0 0.053 0.119 5.980 23.810 33.129 LGA V 17 V 17 5.058 0 0.606 1.491 7.639 30.476 22.925 LGA T 18 T 18 2.915 0 0.539 1.117 6.235 60.952 44.830 LGA D 19 D 19 2.442 0 0.081 0.168 4.929 70.952 53.393 LGA I 20 I 20 2.090 0 0.053 0.626 5.937 70.833 53.631 LGA K 21 K 21 3.146 0 0.034 0.883 12.164 53.690 29.630 LGA D 22 D 22 4.124 0 0.059 0.219 5.940 41.905 32.917 LGA L 23 L 23 2.986 0 0.593 0.729 4.708 57.262 48.869 LGA T 24 T 24 2.025 0 0.658 1.420 5.415 63.095 55.102 LGA K 25 K 25 3.553 0 0.638 1.500 6.506 45.238 32.804 LGA L 26 L 26 5.137 0 0.689 1.438 10.103 43.452 25.179 LGA G 27 G 27 3.743 0 0.674 0.674 4.519 57.500 57.500 LGA A 28 A 28 2.811 0 0.084 0.131 5.473 59.643 52.952 LGA I 29 I 29 2.511 0 0.082 0.685 8.352 61.667 38.512 LGA Y 30 Y 30 1.277 0 0.188 1.366 9.641 62.143 36.270 LGA D 31 D 31 4.476 0 0.248 0.947 6.259 31.429 33.571 LGA K 32 K 32 7.564 0 0.071 1.024 10.426 7.143 6.190 LGA T 33 T 33 10.552 0 0.684 1.382 12.549 0.595 0.340 LGA K 34 K 34 10.106 0 0.673 0.816 16.783 1.429 0.635 LGA K 35 K 35 8.866 0 0.708 0.555 9.949 2.500 1.799 LGA Y 36 Y 36 8.919 0 0.109 1.123 15.373 3.810 1.310 LGA W 37 W 37 8.183 0 0.085 1.148 15.754 4.286 1.327 LGA V 38 V 38 7.580 0 0.104 0.252 8.155 6.548 6.803 LGA Y 39 Y 39 8.567 0 0.593 0.652 15.952 4.881 1.627 LGA Q 40 Q 40 6.119 0 0.410 1.258 10.467 23.333 14.233 LGA G 41 G 41 2.447 0 0.711 0.711 3.729 65.833 65.833 LGA K 42 K 42 2.308 0 0.216 0.854 10.304 70.952 36.508 LGA P 43 P 43 2.750 0 0.063 0.195 6.059 65.119 48.707 LGA V 44 V 44 1.791 0 0.091 0.091 5.419 71.071 54.150 LGA M 45 M 45 1.293 0 0.122 0.872 7.261 79.524 54.821 LGA P 46 P 46 2.045 0 0.142 0.387 3.089 68.929 65.102 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 5.841 5.690 7.923 37.663 28.974 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 19 2.80 46.429 40.989 0.655 LGA_LOCAL RMSD: 2.802 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.262 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 5.841 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.365581 * X + -0.416425 * Y + 0.832431 * Z + 47.223778 Y_new = -0.903144 * X + -0.375014 * Y + 0.209036 * Z + -68.318436 Z_new = 0.225125 * X + -0.828224 * Y + -0.513190 * Z + 29.796885 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.186170 -0.227072 -2.125522 [DEG: -67.9625 -13.0103 -121.7835 ] ZXZ: 1.816824 2.109693 2.876188 [DEG: 104.0963 120.8765 164.7934 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS302_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS302_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 19 2.80 40.989 5.84 REMARK ---------------------------------------------------------- MOLECULE T0548TS302_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3l2t_A ATOM 87 N HIS 12 -31.753 -28.959 40.991 1.00232.61 N ATOM 88 CA HIS 12 -31.450 -28.012 42.023 1.00232.61 C ATOM 89 ND1 HIS 12 -28.375 -28.110 43.475 1.00232.61 N ATOM 90 CG HIS 12 -28.897 -28.059 42.201 1.00232.61 C ATOM 91 CB HIS 12 -30.116 -27.264 41.837 1.00232.61 C ATOM 92 NE2 HIS 12 -27.049 -29.352 42.197 1.00232.61 N ATOM 93 CD2 HIS 12 -28.075 -28.825 41.433 1.00232.61 C ATOM 94 CE1 HIS 12 -27.272 -28.896 43.416 1.00232.61 C ATOM 95 C HIS 12 -32.506 -26.963 41.991 1.00232.61 C ATOM 96 O HIS 12 -33.120 -26.713 40.956 1.00232.61 O ATOM 97 N PHE 13 -32.764 -26.336 43.154 1.00259.15 N ATOM 98 CA PHE 13 -33.715 -25.270 43.176 1.00259.15 C ATOM 99 CB PHE 13 -34.790 -25.406 44.270 1.00259.15 C ATOM 100 CG PHE 13 -35.750 -26.463 43.849 1.00259.15 C ATOM 101 CD1 PHE 13 -36.809 -26.142 43.030 1.00259.15 C ATOM 102 CD2 PHE 13 -35.600 -27.765 44.266 1.00259.15 C ATOM 103 CE1 PHE 13 -37.706 -27.104 42.630 1.00259.15 C ATOM 104 CE2 PHE 13 -36.494 -28.732 43.869 1.00259.15 C ATOM 105 CZ PHE 13 -37.549 -28.403 43.050 1.00259.15 C ATOM 106 C PHE 13 -32.970 -24.010 43.459 1.00259.15 C ATOM 107 O PHE 13 -32.365 -23.852 44.519 1.00259.15 O ATOM 108 N HIS 14 -32.983 -23.083 42.488 1.00286.71 N ATOM 109 CA HIS 14 -32.377 -21.803 42.677 1.00286.71 C ATOM 110 ND1 HIS 14 -30.335 -19.232 41.912 1.00286.71 N ATOM 111 CG HIS 14 -30.214 -20.467 42.507 1.00286.71 C ATOM 112 CB HIS 14 -30.963 -21.696 42.077 1.00286.71 C ATOM 113 NE2 HIS 14 -28.856 -19.001 43.556 1.00286.71 N ATOM 114 CD2 HIS 14 -29.307 -20.308 43.510 1.00286.71 C ATOM 115 CE1 HIS 14 -29.501 -18.393 42.578 1.00286.71 C ATOM 116 C HIS 14 -33.262 -20.873 41.925 1.00286.71 C ATOM 117 O HIS 14 -33.727 -21.208 40.836 1.00286.71 O ATOM 118 N TYR 15 -33.549 -19.682 42.481 1.00295.63 N ATOM 119 CA TYR 15 -34.419 -18.837 41.726 1.00295.63 C ATOM 120 CB TYR 15 -35.360 -17.942 42.563 1.00295.63 C ATOM 121 CG TYR 15 -34.588 -16.918 43.326 1.00295.63 C ATOM 122 CD1 TYR 15 -34.254 -15.717 42.743 1.00295.63 C ATOM 123 CD2 TYR 15 -34.212 -17.153 44.628 1.00295.63 C ATOM 124 CE1 TYR 15 -33.548 -14.767 43.443 1.00295.63 C ATOM 125 CE2 TYR 15 -33.506 -16.207 45.333 1.00295.63 C ATOM 126 CZ TYR 15 -33.172 -15.012 44.741 1.00295.63 C ATOM 127 OH TYR 15 -32.448 -14.037 45.461 1.00295.63 O ATOM 128 C TYR 15 -33.559 -17.980 40.866 1.00295.63 C ATOM 129 O TYR 15 -32.594 -17.373 41.326 1.00295.63 O ATOM 130 N THR 16 -33.874 -17.956 39.558 1.00228.59 N ATOM 131 CA THR 16 -33.117 -17.161 38.644 1.00228.59 C ATOM 132 CB THR 16 -32.985 -17.773 37.280 1.00228.59 C ATOM 133 OG1 THR 16 -34.268 -17.942 36.694 1.00228.59 O ATOM 134 CG2 THR 16 -32.273 -19.128 37.411 1.00228.59 C ATOM 135 C THR 16 -33.842 -15.872 38.479 1.00228.59 C ATOM 136 O THR 16 -34.886 -15.647 39.089 1.00228.59 O ATOM 137 N VAL 17 -33.277 -14.984 37.645 1.00105.67 N ATOM 138 CA VAL 17 -33.903 -13.727 37.390 1.00105.67 C ATOM 139 CB VAL 17 -33.046 -12.783 36.603 1.00105.67 C ATOM 140 CG1 VAL 17 -31.826 -12.408 37.459 1.00105.67 C ATOM 141 CG2 VAL 17 -32.673 -13.459 35.273 1.00105.67 C ATOM 142 C VAL 17 -35.121 -14.027 36.587 1.00105.67 C ATOM 143 O VAL 17 -35.131 -14.953 35.776 1.00105.67 O ATOM 144 N THR 18 -36.197 -13.252 36.806 1.00127.61 N ATOM 145 CA THR 18 -37.396 -13.534 36.090 1.00127.61 C ATOM 146 CB THR 18 -38.625 -13.050 36.820 1.00127.61 C ATOM 147 OG1 THR 18 -39.794 -13.350 36.073 1.00127.61 O ATOM 148 CG2 THR 18 -38.512 -11.544 37.119 1.00127.61 C ATOM 149 C THR 18 -37.301 -12.894 34.745 1.00127.61 C ATOM 150 O THR 18 -37.871 -11.836 34.478 1.00127.61 O ATOM 151 N ASP 19 -36.555 -13.558 33.847 1.00 34.34 N ATOM 152 CA ASP 19 -36.406 -13.093 32.503 1.00 34.34 C ATOM 153 CB ASP 19 -35.419 -13.944 31.686 1.00 34.34 C ATOM 154 CG ASP 19 -34.018 -13.694 32.222 1.00 34.34 C ATOM 155 OD1 ASP 19 -33.830 -12.660 32.914 1.00 34.34 O ATOM 156 OD2 ASP 19 -33.117 -14.532 31.942 1.00 34.34 O ATOM 157 C ASP 19 -37.743 -13.228 31.860 1.00 34.34 C ATOM 158 O ASP 19 -38.149 -12.398 31.049 1.00 34.34 O ATOM 159 N ILE 20 -38.470 -14.291 32.241 1.00 84.50 N ATOM 160 CA ILE 20 -39.729 -14.609 31.638 1.00 84.50 C ATOM 161 CB ILE 20 -40.342 -15.852 32.225 1.00 84.50 C ATOM 162 CG2 ILE 20 -41.776 -15.984 31.684 1.00 84.50 C ATOM 163 CG1 ILE 20 -39.458 -17.081 31.947 1.00 84.50 C ATOM 164 CD1 ILE 20 -38.126 -17.061 32.695 1.00 84.50 C ATOM 165 C ILE 20 -40.703 -13.496 31.863 1.00 84.50 C ATOM 166 O ILE 20 -41.351 -13.038 30.923 1.00 84.50 O ATOM 167 N LYS 21 -40.818 -12.999 33.108 1.00 56.97 N ATOM 168 CA LYS 21 -41.809 -11.993 33.358 1.00 56.97 C ATOM 169 CB LYS 21 -41.887 -11.558 34.833 1.00 56.97 C ATOM 170 CG LYS 21 -42.478 -12.627 35.756 1.00 56.97 C ATOM 171 CD LYS 21 -42.349 -12.291 37.245 1.00 56.97 C ATOM 172 CE LYS 21 -42.994 -13.327 38.172 1.00 56.97 C ATOM 173 NZ LYS 21 -44.469 -13.266 38.059 1.00 56.97 N ATOM 174 C LYS 21 -41.489 -10.788 32.541 1.00 56.97 C ATOM 175 O LYS 21 -42.373 -10.175 31.946 1.00 56.97 O ATOM 176 N ASP 22 -40.197 -10.431 32.466 1.00 48.35 N ATOM 177 CA ASP 22 -39.813 -9.257 31.745 1.00 48.35 C ATOM 178 CB ASP 22 -38.300 -8.989 31.805 1.00 48.35 C ATOM 179 CG ASP 22 -37.963 -8.559 33.226 1.00 48.35 C ATOM 180 OD1 ASP 22 -38.800 -7.844 33.840 1.00 48.35 O ATOM 181 OD2 ASP 22 -36.863 -8.933 33.714 1.00 48.35 O ATOM 182 C ASP 22 -40.182 -9.436 30.310 1.00 48.35 C ATOM 183 O ASP 22 -40.638 -8.495 29.662 1.00 48.35 O ATOM 184 N LEU 23 -40.014 -10.660 29.778 1.00312.36 N ATOM 185 CA LEU 23 -40.260 -10.855 28.380 1.00312.36 C ATOM 186 CB LEU 23 -39.861 -12.266 27.885 1.00312.36 C ATOM 187 CG LEU 23 -39.858 -12.505 26.353 1.00312.36 C ATOM 188 CD1 LEU 23 -39.438 -13.950 26.040 1.00312.36 C ATOM 189 CD2 LEU 23 -41.184 -12.148 25.656 1.00312.36 C ATOM 190 C LEU 23 -41.713 -10.647 28.115 1.00312.36 C ATOM 191 O LEU 23 -42.584 -11.224 28.764 1.00312.36 O ATOM 192 N THR 24 -41.985 -9.761 27.140 1.00335.80 N ATOM 193 CA THR 24 -43.292 -9.509 26.619 1.00335.80 C ATOM 194 CB THR 24 -44.007 -8.370 27.288 1.00335.80 C ATOM 195 OG1 THR 24 -45.345 -8.288 26.822 1.00335.80 O ATOM 196 CG2 THR 24 -43.257 -7.061 26.995 1.00335.80 C ATOM 197 C THR 24 -43.036 -9.125 25.197 1.00335.80 C ATOM 198 O THR 24 -42.074 -8.412 24.919 1.00335.80 O ATOM 199 N LYS 25 -43.858 -9.589 24.238 1.00207.64 N ATOM 200 CA LYS 25 -43.529 -9.214 22.894 1.00207.64 C ATOM 201 CB LYS 25 -42.299 -9.955 22.341 1.00207.64 C ATOM 202 CG LYS 25 -41.665 -9.274 21.124 1.00207.64 C ATOM 203 CD LYS 25 -40.855 -8.027 21.487 1.00207.64 C ATOM 204 CE LYS 25 -41.621 -7.016 22.345 1.00207.64 C ATOM 205 NZ LYS 25 -40.694 -5.971 22.831 1.00207.64 N ATOM 206 C LYS 25 -44.677 -9.576 22.015 1.00207.64 C ATOM 207 O LYS 25 -45.766 -9.906 22.483 1.00207.64 O ATOM 208 N LEU 26 -44.447 -9.499 20.688 1.00196.01 N ATOM 209 CA LEU 26 -45.457 -9.880 19.753 1.00196.01 C ATOM 210 CB LEU 26 -45.027 -9.698 18.287 1.00196.01 C ATOM 211 CG LEU 26 -44.742 -8.234 17.904 1.00196.01 C ATOM 212 CD1 LEU 26 -44.317 -8.114 16.434 1.00196.01 C ATOM 213 CD2 LEU 26 -45.924 -7.324 18.263 1.00196.01 C ATOM 214 C LEU 26 -45.662 -11.338 19.979 1.00196.01 C ATOM 215 O LEU 26 -44.711 -12.066 20.252 1.00196.01 O ATOM 216 N GLY 27 -46.919 -11.802 19.887 1.00 96.19 N ATOM 217 CA GLY 27 -47.181 -13.180 20.168 1.00 96.19 C ATOM 218 C GLY 27 -47.518 -13.225 21.619 1.00 96.19 C ATOM 219 O GLY 27 -47.286 -12.257 22.342 1.00 96.19 O ATOM 220 N ALA 28 -48.071 -14.353 22.101 1.00 42.83 N ATOM 221 CA ALA 28 -48.435 -14.373 23.486 1.00 42.83 C ATOM 222 CB ALA 28 -49.887 -14.820 23.732 1.00 42.83 C ATOM 223 C ALA 28 -47.554 -15.342 24.204 1.00 42.83 C ATOM 224 O ALA 28 -47.297 -16.443 23.724 1.00 42.83 O ATOM 225 N ILE 29 -47.053 -14.926 25.383 1.00157.94 N ATOM 226 CA ILE 29 -46.260 -15.793 26.203 1.00157.94 C ATOM 227 CB ILE 29 -44.872 -15.280 26.481 1.00157.94 C ATOM 228 CG2 ILE 29 -44.147 -15.147 25.132 1.00157.94 C ATOM 229 CG1 ILE 29 -44.900 -13.975 27.296 1.00157.94 C ATOM 230 CD1 ILE 29 -45.618 -12.818 26.605 1.00157.94 C ATOM 231 C ILE 29 -46.984 -15.882 27.508 1.00157.94 C ATOM 232 O ILE 29 -47.370 -14.863 28.079 1.00157.94 O ATOM 233 N TYR 30 -47.226 -17.110 28.007 1.00193.93 N ATOM 234 CA TYR 30 -47.964 -17.209 29.234 1.00193.93 C ATOM 235 CB TYR 30 -49.477 -17.343 29.005 1.00193.93 C ATOM 236 CG TYR 30 -49.668 -18.517 28.109 1.00193.93 C ATOM 237 CD1 TYR 30 -49.709 -19.793 28.619 1.00193.93 C ATOM 238 CD2 TYR 30 -49.800 -18.337 26.751 1.00193.93 C ATOM 239 CE1 TYR 30 -49.882 -20.875 27.789 1.00193.93 C ATOM 240 CE2 TYR 30 -49.974 -19.415 25.915 1.00193.93 C ATOM 241 CZ TYR 30 -50.016 -20.687 26.435 1.00193.93 C ATOM 242 OH TYR 30 -50.193 -21.797 25.582 1.00193.93 O ATOM 243 C TYR 30 -47.513 -18.401 30.022 1.00193.93 C ATOM 244 O TYR 30 -46.721 -19.215 29.549 1.00193.93 O ATOM 245 N ASP 31 -48.014 -18.498 31.277 1.00192.20 N ATOM 246 CA ASP 31 -47.777 -19.617 32.152 1.00192.20 C ATOM 247 CB ASP 31 -47.841 -20.985 31.451 1.00192.20 C ATOM 248 CG ASP 31 -49.302 -21.272 31.136 1.00192.20 C ATOM 249 OD1 ASP 31 -50.169 -20.471 31.581 1.00192.20 O ATOM 250 OD2 ASP 31 -49.573 -22.290 30.444 1.00192.20 O ATOM 251 C ASP 31 -46.458 -19.493 32.842 1.00192.20 C ATOM 252 O ASP 31 -45.574 -18.755 32.410 1.00192.20 O ATOM 253 N LYS 32 -46.316 -20.216 33.975 1.00179.52 N ATOM 254 CA LYS 32 -45.086 -20.193 34.709 1.00179.52 C ATOM 255 CB LYS 32 -45.089 -21.103 35.948 1.00179.52 C ATOM 256 CG LYS 32 -46.017 -20.627 37.066 1.00179.52 C ATOM 257 CD LYS 32 -47.502 -20.752 36.725 1.00179.52 C ATOM 258 CE LYS 32 -47.951 -22.198 36.507 1.00179.52 C ATOM 259 NZ LYS 32 -47.745 -22.986 37.744 1.00179.52 N ATOM 260 C LYS 32 -44.051 -20.712 33.777 1.00179.52 C ATOM 261 O LYS 32 -42.970 -20.139 33.653 1.00179.52 O ATOM 262 N THR 33 -44.363 -21.821 33.081 1.00124.43 N ATOM 263 CA THR 33 -43.436 -22.260 32.088 1.00124.43 C ATOM 264 CB THR 33 -43.694 -23.654 31.585 1.00124.43 C ATOM 265 OG1 THR 33 -42.678 -24.042 30.671 1.00124.43 O ATOM 266 CG2 THR 33 -45.077 -23.711 30.911 1.00124.43 C ATOM 267 C THR 33 -43.641 -21.300 30.970 1.00124.43 C ATOM 268 O THR 33 -44.778 -21.002 30.608 1.00124.43 O ATOM 269 N LYS 34 -42.553 -20.745 30.406 1.00147.25 N ATOM 270 CA LYS 34 -42.794 -19.781 29.379 1.00147.25 C ATOM 271 CB LYS 34 -41.600 -18.863 29.060 1.00147.25 C ATOM 272 CG LYS 34 -41.913 -17.846 27.958 1.00147.25 C ATOM 273 CD LYS 34 -40.872 -16.732 27.815 1.00147.25 C ATOM 274 CE LYS 34 -40.993 -15.619 28.862 1.00147.25 C ATOM 275 NZ LYS 34 -42.255 -14.868 28.672 1.00147.25 N ATOM 276 C LYS 34 -43.144 -20.514 28.132 1.00147.25 C ATOM 277 O LYS 34 -42.516 -21.510 27.779 1.00147.25 O ATOM 278 N LYS 35 -44.191 -20.029 27.442 1.00 58.20 N ATOM 279 CA LYS 35 -44.581 -20.625 26.204 1.00 58.20 C ATOM 280 CB LYS 35 -45.970 -21.286 26.229 1.00 58.20 C ATOM 281 CG LYS 35 -46.031 -22.542 27.099 1.00 58.20 C ATOM 282 CD LYS 35 -47.455 -23.042 27.350 1.00 58.20 C ATOM 283 CE LYS 35 -47.525 -24.298 28.220 1.00 58.20 C ATOM 284 NZ LYS 35 -48.936 -24.704 28.404 1.00 58.20 N ATOM 285 C LYS 35 -44.636 -19.513 25.214 1.00 58.20 C ATOM 286 O LYS 35 -44.956 -18.375 25.554 1.00 58.20 O ATOM 287 N TYR 36 -44.282 -19.819 23.956 1.00108.63 N ATOM 288 CA TYR 36 -44.306 -18.835 22.921 1.00108.63 C ATOM 289 CB TYR 36 -42.904 -18.554 22.351 1.00108.63 C ATOM 290 CG TYR 36 -43.005 -17.577 21.231 1.00108.63 C ATOM 291 CD1 TYR 36 -43.230 -16.241 21.466 1.00108.63 C ATOM 292 CD2 TYR 36 -42.844 -18.008 19.936 1.00108.63 C ATOM 293 CE1 TYR 36 -43.312 -15.356 20.415 1.00108.63 C ATOM 294 CE2 TYR 36 -42.925 -17.131 18.882 1.00108.63 C ATOM 295 CZ TYR 36 -43.163 -15.801 19.123 1.00108.63 C ATOM 296 OH TYR 36 -43.248 -14.896 18.044 1.00108.63 O ATOM 297 C TYR 36 -45.173 -19.373 21.835 1.00108.63 C ATOM 298 O TYR 36 -45.057 -20.535 21.449 1.00108.63 O ATOM 299 N TRP 37 -46.090 -18.525 21.336 1.00129.21 N ATOM 300 CA TRP 37 -46.987 -18.891 20.284 1.00129.21 C ATOM 301 CB TRP 37 -48.194 -17.942 20.201 1.00129.21 C ATOM 302 CG TRP 37 -49.141 -18.179 19.051 1.00129.21 C ATOM 303 CD2 TRP 37 -50.077 -17.189 18.601 1.00129.21 C ATOM 304 CD1 TRP 37 -49.302 -19.264 18.237 1.00129.21 C ATOM 305 NE1 TRP 37 -50.285 -19.010 17.308 1.00129.21 N ATOM 306 CE2 TRP 37 -50.769 -17.735 17.521 1.00129.21 C ATOM 307 CE3 TRP 37 -50.333 -15.927 19.053 1.00129.21 C ATOM 308 CZ2 TRP 37 -51.735 -17.019 16.872 1.00129.21 C ATOM 309 CZ3 TRP 37 -51.309 -15.208 18.398 1.00129.21 C ATOM 310 CH2 TRP 37 -51.996 -15.746 17.330 1.00129.21 C ATOM 311 C TRP 37 -46.232 -18.761 19.011 1.00129.21 C ATOM 312 O TRP 37 -45.597 -17.739 18.754 1.00129.21 O ATOM 313 N VAL 38 -46.284 -19.816 18.175 1.00 42.90 N ATOM 314 CA VAL 38 -45.578 -19.805 16.933 1.00 42.90 C ATOM 315 CB VAL 38 -44.347 -20.671 16.947 1.00 42.90 C ATOM 316 CG1 VAL 38 -43.654 -20.604 15.574 1.00 42.90 C ATOM 317 CG2 VAL 38 -43.451 -20.236 18.114 1.00 42.90 C ATOM 318 C VAL 38 -46.500 -20.398 15.919 1.00 42.90 C ATOM 319 O VAL 38 -47.436 -21.120 16.259 1.00 42.90 O ATOM 320 N TYR 39 -46.259 -20.095 14.636 1.00133.86 N ATOM 321 CA TYR 39 -47.071 -20.665 13.609 1.00133.86 C ATOM 322 CB TYR 39 -46.652 -20.222 12.199 1.00133.86 C ATOM 323 CG TYR 39 -47.442 -21.050 11.249 1.00133.86 C ATOM 324 CD1 TYR 39 -48.737 -20.716 10.928 1.00133.86 C ATOM 325 CD2 TYR 39 -46.880 -22.170 10.680 1.00133.86 C ATOM 326 CE1 TYR 39 -49.461 -21.490 10.051 1.00133.86 C ATOM 327 CE2 TYR 39 -47.598 -22.947 9.803 1.00133.86 C ATOM 328 CZ TYR 39 -48.891 -22.607 9.487 1.00133.86 C ATOM 329 OH TYR 39 -49.630 -23.404 8.587 1.00133.86 O ATOM 330 C TYR 39 -46.890 -22.146 13.684 1.00133.86 C ATOM 331 O TYR 39 -47.854 -22.904 13.592 1.00133.86 O ATOM 332 N GLN 40 -45.634 -22.595 13.875 1.00 80.16 N ATOM 333 CA GLN 40 -45.360 -24.000 13.914 1.00 80.16 C ATOM 334 CB GLN 40 -43.869 -24.319 14.125 1.00 80.16 C ATOM 335 CG GLN 40 -42.950 -23.790 13.019 1.00 80.16 C ATOM 336 CD GLN 40 -43.358 -24.433 11.701 1.00 80.16 C ATOM 337 OE1 GLN 40 -44.272 -23.956 11.029 1.00 80.16 O ATOM 338 NE2 GLN 40 -42.667 -25.540 11.317 1.00 80.16 N ATOM 339 C GLN 40 -46.101 -24.597 15.066 1.00 80.16 C ATOM 340 O GLN 40 -46.719 -25.651 14.932 1.00 80.16 O ATOM 341 N GLY 41 -46.085 -23.924 16.234 1.00 50.49 N ATOM 342 CA GLY 41 -46.746 -24.489 17.375 1.00 50.49 C ATOM 343 C GLY 41 -46.476 -23.594 18.540 1.00 50.49 C ATOM 344 O GLY 41 -46.145 -22.423 18.365 1.00 50.49 O ATOM 345 N LYS 42 -46.632 -24.123 19.771 1.00143.79 N ATOM 346 CA LYS 42 -46.398 -23.302 20.924 1.00143.79 C ATOM 347 CB LYS 42 -47.458 -23.493 22.023 1.00143.79 C ATOM 348 CG LYS 42 -48.907 -23.492 21.522 1.00143.79 C ATOM 349 CD LYS 42 -49.342 -22.221 20.794 1.00143.79 C ATOM 350 CE LYS 42 -50.790 -22.287 20.306 1.00143.79 C ATOM 351 NZ LYS 42 -50.932 -23.353 19.287 1.00143.79 N ATOM 352 C LYS 42 -45.118 -23.778 21.537 1.00143.79 C ATOM 353 O LYS 42 -45.123 -24.768 22.261 1.00143.79 O ATOM 354 N PRO 43 -44.022 -23.125 21.286 1.00137.27 N ATOM 355 CA PRO 43 -42.796 -23.597 21.874 1.00137.27 C ATOM 356 CD PRO 43 -43.806 -22.630 19.936 1.00137.27 C ATOM 357 CB PRO 43 -41.675 -23.104 20.970 1.00137.27 C ATOM 358 CG PRO 43 -42.346 -22.959 19.598 1.00137.27 C ATOM 359 C PRO 43 -42.633 -23.186 23.299 1.00137.27 C ATOM 360 O PRO 43 -43.236 -22.199 23.706 1.00137.27 O ATOM 361 N VAL 44 -41.835 -23.933 24.086 1.00 47.33 N ATOM 362 CA VAL 44 -41.598 -23.529 25.440 1.00 47.33 C ATOM 363 CB VAL 44 -41.952 -24.568 26.461 1.00 47.33 C ATOM 364 CG1 VAL 44 -41.479 -24.072 27.837 1.00 47.33 C ATOM 365 CG2 VAL 44 -43.467 -24.825 26.389 1.00 47.33 C ATOM 366 C VAL 44 -40.132 -23.289 25.550 1.00 47.33 C ATOM 367 O VAL 44 -39.338 -24.036 24.980 1.00 47.33 O ATOM 368 N MET 45 -39.722 -22.216 26.258 1.00148.73 N ATOM 369 CA MET 45 -38.306 -21.999 26.341 1.00148.73 C ATOM 370 CB MET 45 -37.834 -20.738 25.598 1.00148.73 C ATOM 371 CG MET 45 -36.321 -20.515 25.698 1.00148.73 C ATOM 372 SD MET 45 -35.710 -19.004 24.892 1.00148.73 S ATOM 373 CE MET 45 -33.956 -19.351 25.215 1.00148.73 C ATOM 374 C MET 45 -37.884 -21.813 27.768 1.00148.73 C ATOM 375 O MET 45 -37.977 -20.705 28.295 1.00148.73 O ATOM 376 N PRO 46 -37.454 -22.860 28.427 1.00107.75 N ATOM 377 CA PRO 46 -36.865 -22.678 29.728 1.00107.75 C ATOM 378 CD PRO 46 -38.152 -24.130 28.325 1.00107.75 C ATOM 379 CB PRO 46 -37.139 -23.961 30.516 1.00107.75 C ATOM 380 CG PRO 46 -37.544 -24.989 29.444 1.00107.75 C ATOM 381 C PRO 46 -35.408 -22.381 29.539 1.00107.75 C ATOM 382 O PRO 46 -34.742 -23.130 28.827 1.00107.75 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 80.48 58.8 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 85.94 58.8 34 100.0 34 ARMSMC SURFACE . . . . . . . . 85.06 55.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 54.21 75.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.09 50.0 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 80.34 48.3 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 88.77 35.3 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 79.19 51.9 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 84.80 40.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.58 52.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 59.82 52.4 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 68.68 61.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 65.18 54.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 59.97 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.00 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 84.90 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 82.86 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 87.00 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 98.57 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 98.57 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 87.13 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 98.57 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.84 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.84 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.1669 CRMSCA SECONDARY STRUCTURE . . 5.16 17 100.0 17 CRMSCA SURFACE . . . . . . . . 5.75 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.25 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.94 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 5.27 85 100.0 85 CRMSMC SURFACE . . . . . . . . 5.84 143 100.0 143 CRMSMC BURIED . . . . . . . . 6.41 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.51 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 9.68 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 8.98 84 100.0 84 CRMSSC SURFACE . . . . . . . . 8.96 127 100.0 127 CRMSSC BURIED . . . . . . . . 11.60 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.93 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 7.49 152 100.0 152 CRMSALL SURFACE . . . . . . . . 7.54 243 100.0 243 CRMSALL BURIED . . . . . . . . 9.53 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 141.527 0.909 0.914 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 140.720 0.909 0.916 17 100.0 17 ERRCA SURFACE . . . . . . . . 141.982 0.917 0.922 29 100.0 29 ERRCA BURIED . . . . . . . . 139.327 0.867 0.879 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 142.256 0.907 0.913 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 140.585 0.908 0.915 85 100.0 85 ERRMC SURFACE . . . . . . . . 142.890 0.916 0.921 143 100.0 143 ERRMC BURIED . . . . . . . . 139.235 0.865 0.878 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 151.342 0.871 0.881 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 147.953 0.870 0.881 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 135.382 0.863 0.875 84 100.0 84 ERRSC SURFACE . . . . . . . . 147.219 0.877 0.887 127 100.0 127 ERRSC BURIED . . . . . . . . 169.399 0.844 0.858 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 146.757 0.890 0.898 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 137.798 0.885 0.894 152 100.0 152 ERRALL SURFACE . . . . . . . . 144.774 0.897 0.904 243 100.0 243 ERRALL BURIED . . . . . . . . 155.852 0.857 0.870 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 4 9 20 33 35 35 DISTCA CA (P) 0.00 11.43 25.71 57.14 94.29 35 DISTCA CA (RMS) 0.00 1.56 2.20 3.37 5.44 DISTCA ALL (N) 1 18 42 115 234 296 296 DISTALL ALL (P) 0.34 6.08 14.19 38.85 79.05 296 DISTALL ALL (RMS) 0.59 1.54 2.17 3.47 5.89 DISTALL END of the results output