####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS291_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS291_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 4.12 4.12 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 13 - 30 1.82 5.63 LCS_AVERAGE: 47.18 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 14 - 27 0.85 8.33 LCS_AVERAGE: 31.10 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 3 35 0 3 3 3 3 3 3 5 5 24 24 25 25 31 31 33 34 34 34 34 LCS_GDT F 13 F 13 3 18 35 0 3 7 15 18 21 23 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT H 14 H 14 14 18 35 8 12 14 15 18 21 22 22 28 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT Y 15 Y 15 14 18 35 8 12 14 15 18 21 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT T 16 T 16 14 18 35 8 12 14 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT V 17 V 17 14 18 35 7 12 14 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT T 18 T 18 14 18 35 8 12 14 15 19 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT D 19 D 19 14 18 35 8 12 14 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT I 20 I 20 14 18 35 8 12 14 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT K 21 K 21 14 18 35 8 12 14 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT D 22 D 22 14 18 35 8 12 14 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT L 23 L 23 14 18 35 5 12 14 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT T 24 T 24 14 18 35 5 12 14 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT K 25 K 25 14 18 35 5 12 14 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT L 26 L 26 14 18 35 5 12 14 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT G 27 G 27 14 18 35 5 10 14 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT A 28 A 28 13 18 35 4 8 13 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT I 29 I 29 10 18 35 4 6 11 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT Y 30 Y 30 10 18 35 6 8 10 14 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT D 31 D 31 10 16 35 6 8 11 12 17 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT K 32 K 32 10 16 35 6 8 11 12 16 20 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT T 33 T 33 10 16 35 6 8 9 12 16 20 24 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT K 34 K 34 10 16 35 3 8 9 11 17 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT K 35 K 35 10 16 35 6 8 11 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT Y 36 Y 36 10 16 35 6 8 10 12 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT W 37 W 37 10 16 35 8 8 11 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT V 38 V 38 10 16 35 8 8 11 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT Y 39 Y 39 10 16 35 8 8 11 15 19 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT Q 40 Q 40 10 16 35 8 8 11 12 17 21 22 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT G 41 G 41 10 16 35 8 8 11 12 15 15 18 20 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT K 42 K 42 10 16 35 8 8 11 12 15 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT P 43 P 43 10 16 35 8 8 11 12 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT V 44 V 44 10 16 35 8 8 11 12 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 LCS_GDT M 45 M 45 3 16 35 3 3 4 10 11 17 20 24 27 30 31 32 33 33 33 33 34 34 34 34 LCS_GDT P 46 P 46 3 11 35 0 3 3 5 7 10 13 13 14 16 17 22 22 23 27 27 31 34 34 34 LCS_AVERAGE LCS_A: 59.43 ( 31.10 47.18 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 12 14 15 20 22 25 28 30 32 32 32 33 33 33 33 34 34 34 34 GDT PERCENT_AT 22.86 34.29 40.00 42.86 57.14 62.86 71.43 80.00 85.71 91.43 91.43 91.43 94.29 94.29 94.29 94.29 97.14 97.14 97.14 97.14 GDT RMS_LOCAL 0.25 0.66 0.85 1.10 1.83 1.94 2.23 2.57 2.78 3.01 3.01 3.01 3.20 3.20 3.20 3.20 3.56 3.56 3.56 3.56 GDT RMS_ALL_AT 8.70 8.74 8.33 7.61 4.37 4.42 4.29 4.16 4.15 4.15 4.15 4.15 4.13 4.13 4.13 4.13 4.16 4.16 4.16 4.16 # Checking swapping # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 10.679 0 0.636 1.449 15.866 2.976 1.190 LGA F 13 F 13 5.465 0 0.646 0.925 7.266 16.667 22.165 LGA H 14 H 14 6.477 0 0.484 0.975 9.750 20.357 10.714 LGA Y 15 Y 15 4.082 0 0.025 0.729 8.783 44.405 26.468 LGA T 16 T 16 1.319 0 0.015 0.088 3.233 81.786 72.381 LGA V 17 V 17 2.638 0 0.027 0.088 5.133 59.286 50.000 LGA T 18 T 18 3.740 0 0.067 0.149 5.623 51.905 40.952 LGA D 19 D 19 1.594 0 0.054 0.163 4.261 79.643 64.226 LGA I 20 I 20 2.011 0 0.031 0.053 4.133 69.286 58.988 LGA K 21 K 21 3.474 0 0.069 1.098 9.643 53.571 31.164 LGA D 22 D 22 1.801 0 0.034 0.110 3.213 79.643 69.464 LGA L 23 L 23 1.113 0 0.020 0.151 2.302 79.405 76.190 LGA T 24 T 24 2.794 0 0.019 1.124 5.814 60.952 50.272 LGA K 25 K 25 2.377 0 0.046 0.870 7.393 66.786 46.878 LGA L 26 L 26 0.698 0 0.014 1.384 4.768 90.476 73.631 LGA G 27 G 27 1.550 0 0.069 0.069 1.738 77.143 77.143 LGA A 28 A 28 1.279 0 0.027 0.028 1.370 81.429 81.429 LGA I 29 I 29 1.719 0 0.040 1.412 3.800 75.000 67.262 LGA Y 30 Y 30 1.508 0 0.201 0.264 5.619 71.071 51.627 LGA D 31 D 31 2.411 0 0.011 0.199 3.941 68.810 58.631 LGA K 32 K 32 3.717 0 0.184 1.128 6.365 48.333 38.148 LGA T 33 T 33 4.118 0 0.122 0.671 6.368 43.452 36.327 LGA K 34 K 34 2.915 0 0.061 0.586 7.921 60.952 38.995 LGA K 35 K 35 1.050 0 0.276 0.724 3.490 69.405 75.132 LGA Y 36 Y 36 3.005 0 0.144 1.137 5.628 71.667 43.611 LGA W 37 W 37 2.212 0 0.129 1.275 8.127 70.952 31.565 LGA V 38 V 38 1.416 0 0.015 0.146 3.250 69.405 66.327 LGA Y 39 Y 39 3.150 0 0.039 0.193 8.135 55.476 33.452 LGA Q 40 Q 40 4.803 0 0.024 0.973 4.889 32.857 33.333 LGA G 41 G 41 5.523 0 0.053 0.053 5.651 25.119 25.119 LGA K 42 K 42 3.367 0 0.011 0.575 6.046 53.810 42.593 LGA P 43 P 43 2.809 0 0.068 0.299 4.465 57.262 48.639 LGA V 44 V 44 2.927 0 0.634 0.562 4.226 53.810 49.388 LGA M 45 M 45 6.004 0 0.088 0.883 9.418 13.690 12.024 LGA P 46 P 46 12.025 0 0.062 0.088 13.056 0.119 0.272 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 4.124 4.040 5.049 55.912 45.877 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 28 2.57 62.857 63.011 1.047 LGA_LOCAL RMSD: 2.574 Number of atoms: 28 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 4.160 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 4.124 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.407518 * X + -0.417595 * Y + -0.812122 * Z + -34.062592 Y_new = 0.016373 * X + -0.892516 * Y + 0.450718 * Z + -18.301939 Z_new = -0.913050 * X + 0.170379 * Y + 0.370554 * Z + 22.486778 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.101437 1.150701 0.430970 [DEG: 177.6992 65.9303 24.6927 ] ZXZ: -2.077461 1.191191 -1.386314 [DEG: -119.0297 68.2502 -79.4299 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS291_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS291_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 28 2.57 63.011 4.12 REMARK ---------------------------------------------------------- MOLECULE T0548TS291_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 87 N HIS 12 -33.427 -22.003 30.552 1.00 1.00 N ATOM 88 CA HIS 12 -34.750 -21.516 30.886 1.00 1.00 C ATOM 89 C HIS 12 -35.196 -22.030 32.247 1.00 1.00 C ATOM 90 O HIS 12 -35.969 -21.372 32.939 1.00 1.00 O ATOM 91 CB HIS 12 -35.770 -21.981 29.844 1.00 1.00 C ATOM 92 CG HIS 12 -35.622 -21.312 28.513 1.00 1.00 C ATOM 93 ND1 HIS 12 -34.761 -21.771 27.541 1.00 1.00 N ATOM 94 CD2 HIS 12 -36.213 -20.152 27.862 1.00 1.00 C ATOM 95 CE1 HIS 12 -34.848 -20.970 26.465 1.00 1.00 C ATOM 96 NE2 HIS 12 -35.717 -19.997 26.650 1.00 1.00 N ATOM 97 N PHE 13 -34.706 -23.212 32.630 1.00 1.00 N ATOM 98 CA PHE 13 -35.054 -23.809 33.903 1.00 1.00 C ATOM 99 C PHE 13 -34.671 -22.897 35.060 1.00 1.00 C ATOM 100 O PHE 13 -35.295 -22.934 36.117 1.00 1.00 O ATOM 101 CB PHE 13 -34.326 -25.142 34.088 1.00 1.00 C ATOM 102 CG PHE 13 -34.820 -26.232 33.180 1.00 1.00 C ATOM 103 CD1 PHE 13 -36.019 -26.099 32.503 1.00 1.00 C ATOM 104 CD2 PHE 13 -34.083 -27.391 33.004 1.00 1.00 C ATOM 105 CE1 PHE 13 -36.473 -27.103 31.669 1.00 1.00 C ATOM 106 CE2 PHE 13 -34.537 -28.394 32.169 1.00 1.00 C ATOM 107 CZ PHE 13 -35.726 -28.254 31.503 1.00 1.00 C ATOM 108 N HIS 14 -33.639 -22.074 34.855 1.00 1.00 N ATOM 109 CA HIS 14 -33.177 -21.157 35.878 1.00 1.00 C ATOM 110 C HIS 14 -33.717 -19.754 35.640 1.00 1.00 C ATOM 111 O HIS 14 -33.155 -18.777 36.132 1.00 1.00 O ATOM 112 CB HIS 14 -31.649 -21.084 35.881 1.00 1.00 C ATOM 113 CG HIS 14 -30.985 -22.336 36.367 1.00 1.00 C ATOM 114 ND1 HIS 14 -29.651 -22.602 36.150 1.00 1.00 N ATOM 115 CD2 HIS 14 -31.409 -23.516 37.105 1.00 1.00 C ATOM 116 CE1 HIS 14 -29.348 -23.791 36.699 1.00 1.00 C ATOM 117 NE2 HIS 14 -30.398 -24.346 37.274 1.00 1.00 N ATOM 118 N TYR 15 -34.812 -19.655 34.882 1.00 1.00 N ATOM 119 CA TYR 15 -35.423 -18.376 34.583 1.00 1.00 C ATOM 120 C TYR 15 -36.189 -17.840 35.783 1.00 1.00 C ATOM 121 O TYR 15 -36.779 -18.607 36.541 1.00 1.00 O ATOM 122 CB TYR 15 -36.403 -18.509 33.415 1.00 1.00 C ATOM 123 CG TYR 15 -35.734 -18.723 32.076 1.00 1.00 C ATOM 124 CD1 TYR 15 -35.614 -19.998 31.537 1.00 1.00 C ATOM 125 CD2 TYR 15 -35.226 -17.650 31.356 1.00 1.00 C ATOM 126 CE1 TYR 15 -35.004 -20.203 30.314 1.00 1.00 C ATOM 127 CE2 TYR 15 -34.613 -17.835 30.131 1.00 1.00 C ATOM 128 CZ TYR 15 -34.506 -19.125 29.612 1.00 1.00 C ATOM 129 OH TYR 15 -33.898 -19.327 28.394 1.00 1.00 H ATOM 130 N THR 16 -36.181 -16.516 35.955 1.00 1.00 N ATOM 131 CA THR 16 -36.872 -15.883 37.060 1.00 1.00 C ATOM 132 C THR 16 -38.302 -15.528 36.680 1.00 1.00 C ATOM 133 O THR 16 -38.673 -15.600 35.510 1.00 1.00 O ATOM 134 CB THR 16 -36.170 -14.583 37.495 1.00 1.00 C ATOM 135 OG1 THR 16 -36.211 -13.632 36.424 1.00 1.00 O ATOM 136 CG2 THR 16 -34.717 -14.857 37.854 1.00 1.00 C ATOM 137 N VAL 17 -39.108 -15.144 37.674 1.00 1.00 N ATOM 138 CA VAL 17 -40.491 -14.781 37.441 1.00 1.00 C ATOM 139 C VAL 17 -40.605 -13.729 36.347 1.00 1.00 C ATOM 140 O VAL 17 -41.466 -13.827 35.477 1.00 1.00 O ATOM 141 CB VAL 17 -41.144 -14.204 38.711 1.00 1.00 C ATOM 142 CG1 VAL 17 -42.519 -13.637 38.392 1.00 1.00 C ATOM 143 CG2 VAL 17 -41.304 -15.287 39.768 1.00 1.00 C ATOM 144 N THR 18 -39.731 -12.722 36.393 1.00 1.00 N ATOM 145 CA THR 18 -39.736 -11.658 35.409 1.00 1.00 C ATOM 146 C THR 18 -39.325 -12.178 34.039 1.00 1.00 C ATOM 147 O THR 18 -39.840 -11.724 33.020 1.00 1.00 O ATOM 148 CB THR 18 -38.759 -10.531 35.792 1.00 1.00 C ATOM 149 OG1 THR 18 -39.158 -9.952 37.041 1.00 1.00 O ATOM 150 CG2 THR 18 -38.754 -9.446 34.726 1.00 1.00 C ATOM 151 N ASP 19 -38.393 -13.133 34.017 1.00 1.00 N ATOM 152 CA ASP 19 -37.917 -13.710 32.775 1.00 1.00 C ATOM 153 C ASP 19 -39.070 -14.265 31.953 1.00 1.00 C ATOM 154 O ASP 19 -39.101 -14.105 30.734 1.00 1.00 O ATOM 155 CB ASP 19 -36.940 -14.852 33.056 1.00 1.00 C ATOM 156 CG ASP 19 -35.596 -14.359 33.558 1.00 1.00 C ATOM 157 OD1 ASP 19 -35.339 -13.141 33.466 1.00 1.00 O ATOM 158 OD2 ASP 19 -34.802 -15.192 34.044 1.00 1.00 O ATOM 159 N ILE 20 -40.022 -14.920 32.621 1.00 1.00 N ATOM 160 CA ILE 20 -41.170 -15.496 31.951 1.00 1.00 C ATOM 161 C ILE 20 -42.049 -14.413 31.343 1.00 1.00 C ATOM 162 O ILE 20 -42.631 -14.606 30.277 1.00 1.00 O ATOM 163 CB ILE 20 -42.041 -16.311 32.924 1.00 1.00 C ATOM 164 CG1 ILE 20 -41.292 -17.557 33.396 1.00 1.00 C ATOM 165 CG2 ILE 20 -43.329 -16.751 32.246 1.00 1.00 C ATOM 166 CD1 ILE 20 -41.961 -18.275 34.549 1.00 1.00 C ATOM 167 N LYS 21 -42.145 -13.268 32.024 1.00 1.00 N ATOM 168 CA LYS 21 -42.951 -12.160 31.550 1.00 1.00 C ATOM 169 C LYS 21 -42.382 -11.579 30.264 1.00 1.00 C ATOM 170 O LYS 21 -43.128 -11.111 29.408 1.00 1.00 O ATOM 171 CB LYS 21 -42.996 -11.044 32.596 1.00 1.00 C ATOM 172 CG LYS 21 -43.799 -11.391 33.840 1.00 1.00 C ATOM 173 CD LYS 21 -43.798 -10.244 34.836 1.00 1.00 C ATOM 174 CE LYS 21 -44.601 -10.590 36.079 1.00 1.00 C ATOM 175 NZ LYS 21 -44.585 -9.485 37.077 1.00 1.00 N ATOM 176 N ASP 22 -41.053 -11.611 30.130 1.00 1.00 N ATOM 177 CA ASP 22 -40.390 -11.090 28.952 1.00 1.00 C ATOM 178 C ASP 22 -40.805 -11.858 27.705 1.00 1.00 C ATOM 179 O ASP 22 -40.992 -11.268 26.643 1.00 1.00 O ATOM 180 CB ASP 22 -38.871 -11.204 29.097 1.00 1.00 C ATOM 181 CG ASP 22 -38.304 -10.206 30.087 1.00 1.00 C ATOM 182 OD1 ASP 22 -39.039 -9.276 30.480 1.00 1.00 O ATOM 183 OD2 ASP 22 -37.124 -10.353 30.469 1.00 1.00 O ATOM 184 N LEU 23 -40.948 -13.179 27.836 1.00 1.00 N ATOM 185 CA LEU 23 -41.339 -14.020 26.724 1.00 1.00 C ATOM 186 C LEU 23 -42.710 -13.626 26.192 1.00 1.00 C ATOM 187 O LEU 23 -42.904 -13.520 24.983 1.00 1.00 O ATOM 188 CB LEU 23 -41.401 -15.486 27.156 1.00 1.00 C ATOM 189 CG LEU 23 -40.061 -16.162 27.458 1.00 1.00 C ATOM 190 CD1 LEU 23 -40.277 -17.543 28.056 1.00 1.00 C ATOM 191 CD2 LEU 23 -39.241 -16.318 26.186 1.00 1.00 C ATOM 192 N THR 24 -43.662 -13.408 27.102 1.00 1.00 N ATOM 193 CA THR 24 -45.008 -13.026 26.724 1.00 1.00 C ATOM 194 C THR 24 -45.029 -11.643 26.091 1.00 1.00 C ATOM 195 O THR 24 -45.724 -11.418 25.103 1.00 1.00 O ATOM 196 CB THR 24 -45.949 -12.994 27.943 1.00 1.00 C ATOM 197 OG1 THR 24 -46.029 -14.301 28.523 1.00 1.00 O ATOM 198 CG2 THR 24 -47.344 -12.553 27.527 1.00 1.00 C ATOM 199 N LYS 25 -44.262 -10.711 26.664 1.00 1.00 N ATOM 200 CA LYS 25 -44.194 -9.357 26.156 1.00 1.00 C ATOM 201 C LYS 25 -43.687 -9.334 24.721 1.00 1.00 C ATOM 202 O LYS 25 -44.058 -8.459 23.942 1.00 1.00 O ATOM 203 CB LYS 25 -43.245 -8.512 27.008 1.00 1.00 C ATOM 204 CG LYS 25 -43.771 -8.202 28.401 1.00 1.00 C ATOM 205 CD LYS 25 -42.777 -7.368 29.193 1.00 1.00 C ATOM 206 CE LYS 25 -43.301 -7.063 30.587 1.00 1.00 C ATOM 207 NZ LYS 25 -42.324 -6.273 31.386 1.00 1.00 N ATOM 208 N LEU 26 -42.835 -10.301 24.372 1.00 1.00 N ATOM 209 CA LEU 26 -42.281 -10.389 23.036 1.00 1.00 C ATOM 210 C LEU 26 -43.306 -10.934 22.053 1.00 1.00 C ATOM 211 O LEU 26 -43.158 -10.772 20.844 1.00 1.00 O ATOM 212 CB LEU 26 -41.066 -11.318 23.020 1.00 1.00 C ATOM 213 CG LEU 26 -39.853 -10.863 23.834 1.00 1.00 C ATOM 214 CD1 LEU 26 -38.761 -11.921 23.809 1.00 1.00 C ATOM 215 CD2 LEU 26 -39.279 -9.573 23.268 1.00 1.00 C ATOM 216 N GLY 27 -44.350 -11.583 22.576 1.00 1.00 N ATOM 217 CA GLY 27 -45.393 -12.148 21.746 1.00 1.00 C ATOM 218 C GLY 27 -45.575 -13.627 22.056 1.00 1.00 C ATOM 219 O GLY 27 -46.345 -14.314 21.388 1.00 1.00 O ATOM 220 N ALA 28 -44.863 -14.117 23.073 1.00 1.00 N ATOM 221 CA ALA 28 -44.947 -15.508 23.467 1.00 1.00 C ATOM 222 C ALA 28 -46.101 -15.735 24.433 1.00 1.00 C ATOM 223 O ALA 28 -46.648 -14.783 24.986 1.00 1.00 O ATOM 224 CB ALA 28 -43.662 -15.943 24.154 1.00 1.00 C ATOM 225 N ILE 29 -46.472 -17.002 24.635 1.00 1.00 N ATOM 226 CA ILE 29 -47.557 -17.349 25.531 1.00 1.00 C ATOM 227 C ILE 29 -47.038 -17.649 26.930 1.00 1.00 C ATOM 228 O ILE 29 -45.975 -18.248 27.085 1.00 1.00 O ATOM 229 CB ILE 29 -48.319 -18.594 25.041 1.00 1.00 C ATOM 230 CG1 ILE 29 -48.892 -18.352 23.643 1.00 1.00 C ATOM 231 CG2 ILE 29 -49.467 -18.921 25.982 1.00 1.00 C ATOM 232 CD1 ILE 29 -49.846 -17.180 23.568 1.00 1.00 C ATOM 233 N TYR 30 -47.791 -17.232 27.950 1.00 1.00 N ATOM 234 CA TYR 30 -47.406 -17.457 29.328 1.00 1.00 C ATOM 235 C TYR 30 -48.607 -17.853 30.175 1.00 1.00 C ATOM 236 O TYR 30 -49.204 -17.011 30.844 1.00 1.00 O ATOM 237 CB TYR 30 -46.797 -16.189 29.929 1.00 1.00 C ATOM 238 CG TYR 30 -46.212 -16.384 31.310 1.00 1.00 C ATOM 239 CD1 TYR 30 -45.053 -17.125 31.493 1.00 1.00 C ATOM 240 CD2 TYR 30 -46.823 -15.827 32.426 1.00 1.00 C ATOM 241 CE1 TYR 30 -44.511 -17.308 32.751 1.00 1.00 C ATOM 242 CE2 TYR 30 -46.297 -16.000 33.691 1.00 1.00 C ATOM 243 CZ TYR 30 -45.131 -16.749 33.846 1.00 1.00 C ATOM 244 OH TYR 30 -44.594 -16.930 35.101 1.00 1.00 H ATOM 245 N ASP 31 -48.961 -19.139 30.145 1.00 1.00 N ATOM 246 CA ASP 31 -50.087 -19.642 30.907 1.00 1.00 C ATOM 247 C ASP 31 -49.620 -20.371 32.159 1.00 1.00 C ATOM 248 O ASP 31 -49.232 -21.536 32.094 1.00 1.00 O ATOM 249 CB ASP 31 -50.909 -20.620 30.066 1.00 1.00 C ATOM 250 CG ASP 31 -52.120 -21.152 30.808 1.00 1.00 C ATOM 251 OD1 ASP 31 -52.263 -20.842 32.010 1.00 1.00 O ATOM 252 OD2 ASP 31 -52.925 -21.877 30.188 1.00 1.00 O ATOM 253 N LYS 32 -49.658 -19.681 33.302 1.00 1.00 N ATOM 254 CA LYS 32 -49.240 -20.264 34.562 1.00 1.00 C ATOM 255 C LYS 32 -50.290 -21.227 35.095 1.00 1.00 C ATOM 256 O LYS 32 -49.992 -22.067 35.941 1.00 1.00 O ATOM 257 CB LYS 32 -49.021 -19.171 35.610 1.00 1.00 C ATOM 258 CG LYS 32 -50.300 -18.504 36.089 1.00 1.00 C ATOM 259 CD LYS 32 -50.010 -17.443 37.137 1.00 1.00 C ATOM 260 CE LYS 32 -51.294 -16.823 37.666 1.00 1.00 C ATOM 261 NZ LYS 32 -51.023 -15.746 38.657 1.00 1.00 N ATOM 262 N THR 33 -51.523 -21.102 34.598 1.00 1.00 N ATOM 263 CA THR 33 -52.610 -21.959 35.026 1.00 1.00 C ATOM 264 C THR 33 -52.517 -23.330 34.371 1.00 1.00 C ATOM 265 O THR 33 -52.586 -24.352 35.052 1.00 1.00 O ATOM 266 CB THR 33 -53.980 -21.360 34.657 1.00 1.00 C ATOM 267 OG1 THR 33 -54.134 -20.084 35.292 1.00 1.00 O ATOM 268 CG2 THR 33 -55.104 -22.277 35.115 1.00 1.00 C ATOM 269 N LYS 34 -52.359 -23.351 33.046 1.00 1.00 N ATOM 270 CA LYS 34 -52.256 -24.592 32.307 1.00 1.00 C ATOM 271 C LYS 34 -50.802 -24.998 32.115 1.00 1.00 C ATOM 272 O LYS 34 -50.516 -26.043 31.535 1.00 1.00 O ATOM 273 CB LYS 34 -52.895 -24.448 30.924 1.00 1.00 C ATOM 274 CG LYS 34 -54.395 -24.198 30.956 1.00 1.00 C ATOM 275 CD LYS 34 -54.961 -24.059 29.554 1.00 1.00 C ATOM 276 CE LYS 34 -56.451 -23.757 29.587 1.00 1.00 C ATOM 277 NZ LYS 34 -57.026 -23.644 28.219 1.00 1.00 N ATOM 278 N LYS 35 -49.879 -24.166 32.603 1.00 1.00 N ATOM 279 CA LYS 35 -48.462 -24.437 32.483 1.00 1.00 C ATOM 280 C LYS 35 -48.040 -24.517 31.023 1.00 1.00 C ATOM 281 O LYS 35 -47.312 -25.427 30.633 1.00 1.00 O ATOM 282 CB LYS 35 -48.113 -25.768 33.153 1.00 1.00 C ATOM 283 CG LYS 35 -48.355 -25.791 34.652 1.00 1.00 C ATOM 284 CD LYS 35 -47.990 -27.140 35.251 1.00 1.00 C ATOM 285 CE LYS 35 -49.030 -28.194 34.909 1.00 1.00 C ATOM 286 NZ LYS 35 -48.701 -29.516 35.511 1.00 1.00 N ATOM 287 N TYR 36 -48.499 -23.558 30.216 1.00 1.00 N ATOM 288 CA TYR 36 -48.170 -23.522 28.806 1.00 1.00 C ATOM 289 C TYR 36 -47.014 -22.568 28.537 1.00 1.00 C ATOM 290 O TYR 36 -47.109 -21.377 28.822 1.00 1.00 O ATOM 291 CB TYR 36 -49.373 -23.054 27.986 1.00 1.00 C ATOM 292 CG TYR 36 -49.128 -23.034 26.494 1.00 1.00 C ATOM 293 CD1 TYR 36 -49.124 -24.211 25.758 1.00 1.00 C ATOM 294 CD2 TYR 36 -48.902 -21.837 25.827 1.00 1.00 C ATOM 295 CE1 TYR 36 -48.900 -24.203 24.395 1.00 1.00 C ATOM 296 CE2 TYR 36 -48.678 -21.809 24.463 1.00 1.00 C ATOM 297 CZ TYR 36 -48.678 -23.006 23.749 1.00 1.00 C ATOM 298 OH TYR 36 -48.455 -22.994 22.391 1.00 1.00 H ATOM 299 N TRP 37 -45.918 -23.096 27.986 1.00 1.00 N ATOM 300 CA TRP 37 -44.751 -22.294 27.682 1.00 1.00 C ATOM 301 C TRP 37 -44.739 -21.878 26.217 1.00 1.00 C ATOM 302 O TRP 37 -44.729 -22.726 25.328 1.00 1.00 O ATOM 303 CB TRP 37 -43.470 -23.082 27.963 1.00 1.00 C ATOM 304 CG TRP 37 -42.217 -22.312 27.681 1.00 1.00 C ATOM 305 CD1 TRP 37 -41.441 -22.391 26.561 1.00 1.00 C ATOM 306 CD2 TRP 37 -41.594 -21.342 28.534 1.00 1.00 C ATOM 307 NE1 TRP 37 -40.373 -21.533 26.663 1.00 1.00 N ATOM 308 CE2 TRP 37 -40.445 -20.877 27.865 1.00 1.00 C ATOM 309 CE3 TRP 37 -41.896 -20.823 29.796 1.00 1.00 C ATOM 310 CZ2 TRP 37 -39.597 -19.917 28.417 1.00 1.00 C ATOM 311 CZ3 TRP 37 -41.053 -19.873 30.340 1.00 1.00 C ATOM 312 CH2 TRP 37 -39.917 -19.428 29.653 1.00 1.00 H ATOM 313 N VAL 38 -44.738 -20.567 25.968 1.00 1.00 N ATOM 314 CA VAL 38 -44.727 -20.044 24.616 1.00 1.00 C ATOM 315 C VAL 38 -43.564 -19.085 24.409 1.00 1.00 C ATOM 316 O VAL 38 -43.276 -18.258 25.271 1.00 1.00 O ATOM 317 CB VAL 38 -46.025 -19.277 24.297 1.00 1.00 C ATOM 318 CG1 VAL 38 -45.968 -18.697 22.892 1.00 1.00 C ATOM 319 CG2 VAL 38 -47.226 -20.205 24.386 1.00 1.00 C ATOM 320 N TYR 39 -42.894 -19.198 23.260 1.00 1.00 N ATOM 321 CA TYR 39 -41.767 -18.343 22.945 1.00 1.00 C ATOM 322 C TYR 39 -41.612 -18.174 21.440 1.00 1.00 C ATOM 323 O TYR 39 -41.530 -19.157 20.707 1.00 1.00 O ATOM 324 CB TYR 39 -40.470 -18.943 23.492 1.00 1.00 C ATOM 325 CG TYR 39 -39.242 -18.107 23.211 1.00 1.00 C ATOM 326 CD1 TYR 39 -38.983 -16.954 23.943 1.00 1.00 C ATOM 327 CD2 TYR 39 -38.345 -18.471 22.215 1.00 1.00 C ATOM 328 CE1 TYR 39 -37.863 -16.184 23.692 1.00 1.00 C ATOM 329 CE2 TYR 39 -37.221 -17.713 21.951 1.00 1.00 C ATOM 330 CZ TYR 39 -36.985 -16.561 22.700 1.00 1.00 C ATOM 331 OH TYR 39 -35.869 -15.796 22.450 1.00 1.00 H ATOM 332 N GLN 40 -41.572 -16.921 20.981 1.00 1.00 N ATOM 333 CA GLN 40 -41.428 -16.627 19.569 1.00 1.00 C ATOM 334 C GLN 40 -42.667 -17.050 18.792 1.00 1.00 C ATOM 335 O GLN 40 -42.565 -17.508 17.657 1.00 1.00 O ATOM 336 CB GLN 40 -40.225 -17.372 18.987 1.00 1.00 C ATOM 337 CG GLN 40 -38.879 -16.819 19.429 1.00 1.00 C ATOM 338 CD GLN 40 -38.488 -15.566 18.672 1.00 1.00 C ATOM 339 OE1 GLN 40 -39.325 -14.704 18.402 1.00 1.00 O ATOM 340 NE2 GLN 40 -37.210 -15.459 18.326 1.00 1.00 N ATOM 341 N GLY 41 -43.840 -16.893 19.408 1.00 1.00 N ATOM 342 CA GLY 41 -45.092 -17.257 18.775 1.00 1.00 C ATOM 343 C GLY 41 -45.153 -18.759 18.545 1.00 1.00 C ATOM 344 O GLY 41 -45.950 -19.236 17.740 1.00 1.00 O ATOM 345 N LYS 42 -44.307 -19.508 19.257 1.00 1.00 N ATOM 346 CA LYS 42 -44.267 -20.951 19.129 1.00 1.00 C ATOM 347 C LYS 42 -44.092 -21.617 20.486 1.00 1.00 C ATOM 348 O LYS 42 -43.491 -21.042 21.390 1.00 1.00 O ATOM 349 CB LYS 42 -43.099 -21.377 18.236 1.00 1.00 C ATOM 350 CG LYS 42 -43.246 -20.961 16.782 1.00 1.00 C ATOM 351 CD LYS 42 -42.082 -21.464 15.943 1.00 1.00 C ATOM 352 CE LYS 42 -42.219 -21.032 14.492 1.00 1.00 C ATOM 353 NZ LYS 42 -41.066 -21.484 13.668 1.00 1.00 N ATOM 354 N PRO 43 -44.622 -22.835 20.627 1.00 1.00 N ATOM 355 CA PRO 43 -44.523 -23.574 21.872 1.00 1.00 C ATOM 356 C PRO 43 -43.095 -24.034 22.124 1.00 1.00 C ATOM 357 O PRO 43 -42.464 -24.620 21.247 1.00 1.00 O ATOM 358 CB PRO 43 -45.466 -24.762 21.672 1.00 1.00 C ATOM 359 CG PRO 43 -45.526 -24.947 20.193 1.00 1.00 C ATOM 360 CD PRO 43 -45.379 -23.576 19.595 1.00 1.00 C ATOM 361 N VAL 44 -42.575 -23.770 23.327 1.00 1.00 N ATOM 362 CA VAL 44 -41.222 -24.173 23.652 1.00 1.00 C ATOM 363 C VAL 44 -41.215 -25.282 24.693 1.00 1.00 C ATOM 364 O VAL 44 -40.200 -25.947 24.890 1.00 1.00 O ATOM 365 CB VAL 44 -40.404 -22.998 24.219 1.00 1.00 C ATOM 366 CG1 VAL 44 -39.031 -23.473 24.670 1.00 1.00 C ATOM 367 CG2 VAL 44 -40.215 -21.920 23.162 1.00 1.00 C ATOM 368 N MET 45 -42.353 -25.480 25.363 1.00 1.00 N ATOM 369 CA MET 45 -42.474 -26.506 26.379 1.00 1.00 C ATOM 370 C MET 45 -43.918 -26.655 26.838 1.00 1.00 C ATOM 371 O MET 45 -44.645 -25.669 26.941 1.00 1.00 O ATOM 372 CB MET 45 -41.622 -26.154 27.599 1.00 1.00 C ATOM 373 CG MET 45 -41.599 -27.232 28.672 1.00 1.00 C ATOM 374 SD MET 45 -40.526 -26.811 30.058 1.00 1.00 S ATOM 375 CE MET 45 -41.554 -25.641 30.941 1.00 1.00 C ATOM 376 N PRO 46 -44.333 -27.894 27.113 1.00 1.00 N ATOM 377 CA PRO 46 -45.686 -28.167 27.559 1.00 1.00 C ATOM 378 C PRO 46 -46.021 -27.375 28.816 1.00 1.00 C ATOM 379 O PRO 46 -45.139 -27.080 29.620 1.00 1.00 O ATOM 380 CB PRO 46 -45.689 -29.674 27.830 1.00 1.00 C ATOM 381 CG PRO 46 -44.581 -30.206 26.987 1.00 1.00 C ATOM 382 CD PRO 46 -43.504 -29.159 27.002 1.00 1.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 41.85 80.9 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 16.50 85.3 34 100.0 34 ARMSMC SURFACE . . . . . . . . 41.18 80.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 44.87 83.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.16 59.4 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 72.56 55.2 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 70.29 58.8 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 72.34 55.6 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 48.53 80.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.41 52.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 64.92 57.1 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 70.10 76.9 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 61.85 54.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 109.98 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.73 50.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 79.26 57.1 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 81.87 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 76.73 50.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 51.61 83.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 51.61 83.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 89.20 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 51.61 83.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.12 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.12 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.1178 CRMSCA SECONDARY STRUCTURE . . 2.51 17 100.0 17 CRMSCA SURFACE . . . . . . . . 4.40 29 100.0 29 CRMSCA BURIED . . . . . . . . 2.36 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.18 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 2.53 85 100.0 85 CRMSMC SURFACE . . . . . . . . 4.44 143 100.0 143 CRMSMC BURIED . . . . . . . . 2.56 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.84 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 5.48 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 4.89 84 100.0 84 CRMSSC SURFACE . . . . . . . . 5.96 127 100.0 127 CRMSSC BURIED . . . . . . . . 5.32 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 5.07 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 3.95 152 100.0 152 CRMSALL SURFACE . . . . . . . . 5.23 243 100.0 243 CRMSALL BURIED . . . . . . . . 4.27 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.396 0.458 0.239 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 1.378 0.378 0.209 17 100.0 17 ERRCA SURFACE . . . . . . . . 2.646 0.486 0.255 29 100.0 29 ERRCA BURIED . . . . . . . . 1.190 0.324 0.162 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.409 0.450 0.227 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 1.353 0.358 0.184 85 100.0 85 ERRMC SURFACE . . . . . . . . 2.628 0.469 0.237 143 100.0 143 ERRMC BURIED . . . . . . . . 1.365 0.358 0.179 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.185 0.616 0.308 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 3.974 0.611 0.306 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 3.494 0.587 0.294 84 100.0 84 ERRSC SURFACE . . . . . . . . 4.266 0.622 0.311 127 100.0 127 ERRSC BURIED . . . . . . . . 3.834 0.588 0.294 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.278 0.529 0.266 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 2.452 0.472 0.239 152 100.0 152 ERRALL SURFACE . . . . . . . . 3.410 0.540 0.272 243 100.0 243 ERRALL BURIED . . . . . . . . 2.673 0.477 0.239 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 10 17 30 34 35 35 DISTCA CA (P) 2.86 28.57 48.57 85.71 97.14 35 DISTCA CA (RMS) 0.43 1.44 1.89 2.82 3.59 DISTCA ALL (N) 10 57 110 208 283 296 296 DISTALL ALL (P) 3.38 19.26 37.16 70.27 95.61 296 DISTALL ALL (RMS) 0.84 1.49 2.02 3.07 4.42 DISTALL END of the results output