####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS275_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS275_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 23 - 37 4.85 13.48 LONGEST_CONTINUOUS_SEGMENT: 15 24 - 38 4.87 13.90 LONGEST_CONTINUOUS_SEGMENT: 15 25 - 39 4.77 14.44 LONGEST_CONTINUOUS_SEGMENT: 15 27 - 41 4.68 17.21 LONGEST_CONTINUOUS_SEGMENT: 15 28 - 42 4.69 17.48 LCS_AVERAGE: 39.43 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 12 - 18 0.92 15.86 LONGEST_CONTINUOUS_SEGMENT: 7 40 - 46 1.85 15.90 LCS_AVERAGE: 17.31 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 12 - 18 0.92 15.86 LCS_AVERAGE: 13.63 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 7 7 13 3 6 8 8 8 8 9 10 10 11 11 12 13 14 15 16 18 19 21 23 LCS_GDT F 13 F 13 7 7 13 4 6 8 8 8 8 9 10 10 11 11 12 13 14 15 16 18 19 21 23 LCS_GDT H 14 H 14 7 7 13 4 6 8 8 8 8 9 10 10 11 11 12 13 14 15 16 18 19 21 23 LCS_GDT Y 15 Y 15 7 7 13 4 6 8 8 8 8 9 10 10 11 11 12 13 14 16 18 18 21 21 23 LCS_GDT T 16 T 16 7 7 13 4 6 8 8 8 8 9 10 10 11 11 12 13 14 17 18 20 21 22 24 LCS_GDT V 17 V 17 7 7 13 3 6 8 8 8 8 9 10 10 11 11 13 14 16 17 18 20 21 22 24 LCS_GDT T 18 T 18 7 7 13 3 3 8 8 8 8 9 10 10 11 11 13 14 16 17 18 20 21 22 24 LCS_GDT D 19 D 19 3 5 13 3 3 4 4 4 5 5 6 8 9 11 13 14 14 17 18 20 21 22 24 LCS_GDT I 20 I 20 3 5 13 3 3 4 4 4 5 5 7 10 10 11 12 13 14 17 18 20 21 22 23 LCS_GDT K 21 K 21 3 5 13 3 6 8 8 8 8 9 10 10 11 11 13 14 14 17 18 19 20 22 24 LCS_GDT D 22 D 22 3 5 13 3 3 3 4 4 5 7 9 9 10 11 13 14 16 17 18 20 21 22 24 LCS_GDT L 23 L 23 3 3 15 3 3 3 4 4 5 9 10 10 11 11 13 14 16 17 18 20 21 22 24 LCS_GDT T 24 T 24 3 3 15 0 3 3 4 4 5 7 8 8 9 11 13 14 16 17 18 20 21 22 24 LCS_GDT K 25 K 25 3 6 15 0 3 3 4 5 6 6 8 9 11 12 13 15 16 17 18 20 21 22 24 LCS_GDT L 26 L 26 3 6 15 1 3 3 4 5 6 6 8 9 11 12 13 15 16 17 18 20 21 22 24 LCS_GDT G 27 G 27 4 6 15 3 3 4 4 5 6 7 8 9 9 12 13 15 16 17 18 20 21 22 24 LCS_GDT A 28 A 28 4 6 15 3 3 4 4 5 6 6 8 9 11 13 14 15 16 17 18 20 21 22 24 LCS_GDT I 29 I 29 5 6 15 4 5 5 5 5 6 6 8 9 12 13 14 15 16 17 18 20 21 22 24 LCS_GDT Y 30 Y 30 5 6 15 4 5 5 5 5 6 6 8 9 12 13 14 15 16 17 18 19 20 22 24 LCS_GDT D 31 D 31 5 5 15 4 5 5 5 5 5 7 9 11 12 13 14 15 16 17 18 19 20 22 24 LCS_GDT K 32 K 32 5 5 15 4 5 5 5 5 7 9 10 11 12 13 14 15 16 17 18 19 20 22 24 LCS_GDT T 33 T 33 5 6 15 4 5 5 5 6 8 9 10 11 12 13 14 15 16 17 18 19 20 22 24 LCS_GDT K 34 K 34 3 6 15 3 3 3 4 6 8 9 10 11 12 13 14 15 16 17 17 19 20 22 24 LCS_GDT K 35 K 35 3 6 15 3 3 4 4 6 8 9 10 11 12 13 14 15 16 16 17 19 20 21 23 LCS_GDT Y 36 Y 36 3 6 15 3 3 5 5 6 8 9 10 11 12 13 14 15 16 17 18 19 20 22 24 LCS_GDT W 37 W 37 4 6 15 3 3 5 5 6 8 9 10 11 11 12 14 15 16 17 18 19 20 22 24 LCS_GDT V 38 V 38 4 6 15 3 3 5 5 6 8 9 10 11 12 13 14 15 16 17 18 20 21 22 24 LCS_GDT Y 39 Y 39 4 6 15 3 3 5 5 6 8 8 10 11 12 13 14 15 16 17 18 20 21 22 24 LCS_GDT Q 40 Q 40 4 7 15 3 3 5 5 6 8 9 10 11 12 13 14 15 16 17 18 20 21 22 24 LCS_GDT G 41 G 41 6 7 15 3 6 6 6 6 7 9 10 11 12 13 14 15 16 17 18 20 21 22 24 LCS_GDT K 42 K 42 6 7 15 3 6 6 6 6 7 7 7 9 10 11 12 14 16 17 18 20 21 22 24 LCS_GDT P 43 P 43 6 7 13 3 6 6 6 6 7 7 7 9 9 10 11 12 16 17 18 20 21 22 23 LCS_GDT V 44 V 44 6 7 9 3 6 6 6 6 8 9 9 10 10 11 12 13 16 17 18 20 21 22 24 LCS_GDT M 45 M 45 6 7 9 3 6 6 6 6 7 7 7 9 9 10 11 13 16 17 18 20 21 22 23 LCS_GDT P 46 P 46 6 7 9 3 6 6 6 6 7 7 7 8 9 10 10 13 16 17 18 20 21 22 23 LCS_AVERAGE LCS_A: 23.46 ( 13.63 17.31 39.43 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 6 8 8 8 8 9 10 11 12 13 14 15 16 17 18 20 21 22 24 GDT PERCENT_AT 11.43 17.14 22.86 22.86 22.86 22.86 25.71 28.57 31.43 34.29 37.14 40.00 42.86 45.71 48.57 51.43 57.14 60.00 62.86 68.57 GDT RMS_LOCAL 0.26 0.59 0.89 0.89 0.89 0.89 1.87 2.76 2.95 3.73 4.08 4.31 4.77 5.24 5.43 5.63 6.15 6.35 6.83 7.34 GDT RMS_ALL_AT 16.88 16.03 16.03 16.03 16.03 16.03 17.10 19.25 19.18 18.17 17.68 17.61 14.44 15.15 12.56 12.42 14.34 13.93 11.44 11.30 # Checking swapping # possible swapping detected: Y 15 Y 15 # possible swapping detected: D 19 D 19 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 20.521 0 0.630 1.004 22.812 0.000 0.000 LGA F 13 F 13 19.945 0 0.041 0.440 23.124 0.000 0.000 LGA H 14 H 14 25.850 0 0.082 1.133 30.061 0.000 0.000 LGA Y 15 Y 15 27.517 0 0.096 0.758 31.556 0.000 0.000 LGA T 16 T 16 32.065 0 0.034 0.105 32.328 0.000 0.000 LGA V 17 V 17 34.423 0 0.592 0.657 38.443 0.000 0.000 LGA T 18 T 18 32.394 0 0.561 0.976 33.299 0.000 0.000 LGA D 19 D 19 31.033 0 0.589 1.122 33.438 0.000 0.000 LGA I 20 I 20 32.088 0 0.563 1.054 37.936 0.000 0.000 LGA K 21 K 21 29.997 0 0.630 1.042 31.429 0.000 0.000 LGA D 22 D 22 26.775 0 0.663 0.846 29.428 0.000 0.000 LGA L 23 L 23 20.852 0 0.595 1.095 23.470 0.000 0.000 LGA T 24 T 24 20.446 0 0.640 1.419 23.342 0.000 0.000 LGA K 25 K 25 18.810 0 0.670 0.836 21.120 0.000 0.000 LGA L 26 L 26 15.478 0 0.669 0.770 15.964 0.000 0.000 LGA G 27 G 27 13.167 0 0.693 0.693 14.447 0.000 0.000 LGA A 28 A 28 12.532 0 0.044 0.048 13.649 0.000 0.000 LGA I 29 I 29 10.910 0 0.581 1.006 11.746 0.000 0.000 LGA Y 30 Y 30 10.411 0 0.090 1.218 19.170 5.119 1.706 LGA D 31 D 31 4.703 0 0.040 1.086 6.995 23.333 25.476 LGA K 32 K 32 3.483 0 0.607 1.259 12.944 50.357 27.672 LGA T 33 T 33 3.319 0 0.501 1.448 7.073 56.429 38.639 LGA K 34 K 34 3.223 0 0.206 1.209 10.997 54.286 32.116 LGA K 35 K 35 0.898 0 0.742 1.212 7.213 78.095 58.995 LGA Y 36 Y 36 1.057 0 0.122 1.087 10.187 75.833 35.675 LGA W 37 W 37 3.138 0 0.110 1.179 15.090 71.429 22.551 LGA V 38 V 38 2.010 0 0.142 1.198 6.130 57.976 43.129 LGA Y 39 Y 39 3.558 0 0.600 1.398 14.462 54.167 20.913 LGA Q 40 Q 40 2.346 0 0.398 1.311 8.501 64.881 40.370 LGA G 41 G 41 2.989 0 0.693 0.693 6.900 42.381 42.381 LGA K 42 K 42 8.495 0 0.161 0.562 12.287 5.476 4.286 LGA P 43 P 43 14.925 0 0.051 0.228 17.315 0.000 0.000 LGA V 44 V 44 16.673 0 0.036 1.080 20.938 0.000 0.000 LGA M 45 M 45 21.381 0 0.195 0.922 22.665 0.000 0.000 LGA P 46 P 46 26.835 0 0.072 0.077 29.493 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 10.330 10.231 11.066 18.279 11.255 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 10 2.76 30.000 26.795 0.349 LGA_LOCAL RMSD: 2.765 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 19.250 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 10.330 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.675410 * X + 0.044937 * Y + 0.736072 * Z + 43.911163 Y_new = 0.727299 * X + 0.124388 * Y + -0.674954 * Z + -20.268425 Z_new = -0.121889 * X + 0.991216 * Y + 0.051330 * Z + -25.446808 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.822373 0.122193 1.519057 [DEG: 47.1185 7.0012 87.0356 ] ZXZ: 0.828685 1.519444 -0.122355 [DEG: 47.4802 87.0577 -7.0104 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS275_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS275_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 10 2.76 26.795 10.33 REMARK ---------------------------------------------------------- MOLECULE T0548TS275_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 87 N HIS 12 -51.330 -33.475 16.548 1.00 11.88 N ATOM 88 CA HIS 12 -52.483 -32.883 17.165 1.00 11.88 C ATOM 89 ND1 HIS 12 -51.107 -31.889 20.155 1.00 11.88 N ATOM 90 CG HIS 12 -51.395 -33.045 19.467 1.00 11.88 C ATOM 91 CB HIS 12 -52.632 -33.261 18.648 1.00 11.88 C ATOM 92 NE2 HIS 12 -49.431 -33.299 20.551 1.00 11.88 N ATOM 93 CD2 HIS 12 -50.361 -33.895 19.718 1.00 11.88 C ATOM 94 CE1 HIS 12 -49.922 -32.096 20.786 1.00 11.88 C ATOM 95 C HIS 12 -52.482 -31.390 17.033 1.00 11.88 C ATOM 96 O HIS 12 -53.549 -30.786 16.942 1.00 11.88 O ATOM 97 N PHE 13 -51.306 -30.739 17.044 1.00 11.64 N ATOM 98 CA PHE 13 -51.299 -29.307 16.926 1.00 11.64 C ATOM 99 CB PHE 13 -49.888 -28.703 16.886 1.00 11.64 C ATOM 100 CG PHE 13 -49.248 -29.038 18.186 1.00 11.64 C ATOM 101 CD1 PHE 13 -49.540 -28.312 19.316 1.00 11.64 C ATOM 102 CD2 PHE 13 -48.353 -30.078 18.269 1.00 11.64 C ATOM 103 CE1 PHE 13 -48.948 -28.622 20.517 1.00 11.64 C ATOM 104 CE2 PHE 13 -47.756 -30.392 19.466 1.00 11.64 C ATOM 105 CZ PHE 13 -48.054 -29.664 20.593 1.00 11.64 C ATOM 106 C PHE 13 -51.978 -28.952 15.644 1.00 11.64 C ATOM 107 O PHE 13 -51.810 -29.627 14.630 1.00 11.64 O ATOM 108 N HIS 14 -52.784 -27.871 15.670 1.00 11.36 N ATOM 109 CA HIS 14 -53.543 -27.487 14.518 1.00 11.36 C ATOM 110 ND1 HIS 14 -56.703 -26.526 16.454 1.00 11.36 N ATOM 111 CG HIS 14 -55.715 -27.210 15.784 1.00 11.36 C ATOM 112 CB HIS 14 -54.727 -26.566 14.858 1.00 11.36 C ATOM 113 NE2 HIS 14 -56.907 -28.663 17.033 1.00 11.36 N ATOM 114 CD2 HIS 14 -55.855 -28.514 16.148 1.00 11.36 C ATOM 115 CE1 HIS 14 -57.386 -27.442 17.187 1.00 11.36 C ATOM 116 C HIS 14 -52.659 -26.755 13.566 1.00 11.36 C ATOM 117 O HIS 14 -51.848 -25.917 13.960 1.00 11.36 O ATOM 118 N TYR 15 -52.809 -27.067 12.265 1.00 10.95 N ATOM 119 CA TYR 15 -52.039 -26.421 11.251 1.00 10.95 C ATOM 120 CB TYR 15 -51.289 -27.399 10.329 1.00 10.95 C ATOM 121 CG TYR 15 -50.289 -28.144 11.147 1.00 10.95 C ATOM 122 CD1 TYR 15 -49.065 -27.585 11.437 1.00 10.95 C ATOM 123 CD2 TYR 15 -50.570 -29.405 11.621 1.00 10.95 C ATOM 124 CE1 TYR 15 -48.139 -28.269 12.191 1.00 10.95 C ATOM 125 CE2 TYR 15 -49.647 -30.095 12.374 1.00 10.95 C ATOM 126 CZ TYR 15 -48.429 -29.527 12.661 1.00 10.95 C ATOM 127 OH TYR 15 -47.482 -30.232 13.433 1.00 10.95 H ATOM 128 C TYR 15 -53.026 -25.687 10.395 1.00 10.95 C ATOM 129 O TYR 15 -53.999 -26.267 9.915 1.00 10.95 O ATOM 130 N THR 16 -52.800 -24.376 10.191 1.00 10.51 N ATOM 131 CA THR 16 -53.704 -23.594 9.403 1.00 10.51 C ATOM 132 CB THR 16 -54.391 -22.515 10.187 1.00 10.51 C ATOM 133 OG1 THR 16 -53.429 -21.624 10.736 1.00 10.51 O ATOM 134 CG2 THR 16 -55.218 -23.163 11.310 1.00 10.51 C ATOM 135 C THR 16 -52.900 -22.932 8.336 1.00 10.51 C ATOM 136 O THR 16 -51.673 -23.017 8.323 1.00 10.51 O ATOM 137 N VAL 17 -53.581 -22.271 7.380 1.00 9.47 N ATOM 138 CA VAL 17 -52.850 -21.633 6.329 1.00 9.47 C ATOM 139 CB VAL 17 -53.259 -22.071 4.954 1.00 9.47 C ATOM 140 CG1 VAL 17 -52.483 -21.231 3.925 1.00 9.47 C ATOM 141 CG2 VAL 17 -53.020 -23.586 4.835 1.00 9.47 C ATOM 142 C VAL 17 -53.095 -20.164 6.408 1.00 9.47 C ATOM 143 O VAL 17 -54.188 -19.714 6.748 1.00 9.47 O ATOM 144 N THR 18 -52.045 -19.381 6.103 1.00 9.51 N ATOM 145 CA THR 18 -52.116 -17.952 6.079 1.00 9.51 C ATOM 146 CB THR 18 -51.306 -17.292 7.156 1.00 9.51 C ATOM 147 OG1 THR 18 -51.570 -15.898 7.182 1.00 9.51 O ATOM 148 CG2 THR 18 -49.815 -17.551 6.884 1.00 9.51 C ATOM 149 C THR 18 -51.523 -17.586 4.765 1.00 9.51 C ATOM 150 O THR 18 -51.383 -18.470 3.920 1.00 9.51 O ATOM 151 N ASP 19 -51.178 -16.290 4.570 1.00 11.05 N ATOM 152 CA ASP 19 -50.616 -15.805 3.337 1.00 11.05 C ATOM 153 CB ASP 19 -50.009 -14.398 3.456 1.00 11.05 C ATOM 154 CG ASP 19 -51.146 -13.409 3.680 1.00 11.05 C ATOM 155 OD1 ASP 19 -52.327 -13.817 3.512 1.00 11.05 O ATOM 156 OD2 ASP 19 -50.852 -12.235 4.029 1.00 11.05 O ATOM 157 C ASP 19 -49.519 -16.741 2.980 1.00 11.05 C ATOM 158 O ASP 19 -48.442 -16.685 3.571 1.00 11.05 O ATOM 159 N ILE 20 -49.815 -17.578 1.956 1.00 10.79 N ATOM 160 CA ILE 20 -49.115 -18.747 1.495 1.00 10.79 C ATOM 161 CB ILE 20 -48.620 -18.620 0.078 1.00 10.79 C ATOM 162 CG2 ILE 20 -47.737 -17.366 -0.042 1.00 10.79 C ATOM 163 CG1 ILE 20 -47.944 -19.926 -0.368 1.00 10.79 C ATOM 164 CD1 ILE 20 -47.680 -19.994 -1.872 1.00 10.79 C ATOM 165 C ILE 20 -47.975 -19.078 2.396 1.00 10.79 C ATOM 166 O ILE 20 -46.859 -18.586 2.245 1.00 10.79 O ATOM 167 N LYS 21 -48.266 -19.979 3.351 1.00 11.83 N ATOM 168 CA LYS 21 -47.330 -20.453 4.324 1.00 11.83 C ATOM 169 CB LYS 21 -46.890 -19.406 5.373 1.00 11.83 C ATOM 170 CG LYS 21 -46.116 -18.195 4.846 1.00 11.83 C ATOM 171 CD LYS 21 -44.805 -18.548 4.143 1.00 11.83 C ATOM 172 CE LYS 21 -43.643 -18.792 5.105 1.00 11.83 C ATOM 173 NZ LYS 21 -43.818 -20.090 5.795 1.00 11.83 N ATOM 174 C LYS 21 -48.097 -21.452 5.122 1.00 11.83 C ATOM 175 O LYS 21 -49.285 -21.260 5.378 1.00 11.83 O ATOM 176 N ASP 22 -47.452 -22.558 5.527 1.00 11.82 N ATOM 177 CA ASP 22 -48.152 -23.458 6.390 1.00 11.82 C ATOM 178 CB ASP 22 -47.657 -24.913 6.319 1.00 11.82 C ATOM 179 CG ASP 22 -48.604 -25.769 7.147 1.00 11.82 C ATOM 180 OD1 ASP 22 -49.533 -25.187 7.769 1.00 11.82 O ATOM 181 OD2 ASP 22 -48.414 -27.013 7.173 1.00 11.82 O ATOM 182 C ASP 22 -47.863 -22.945 7.759 1.00 11.82 C ATOM 183 O ASP 22 -46.705 -22.714 8.102 1.00 11.82 O ATOM 184 N LEU 23 -48.909 -22.723 8.576 1.00 11.47 N ATOM 185 CA LEU 23 -48.658 -22.150 9.863 1.00 11.47 C ATOM 186 CB LEU 23 -49.418 -20.821 10.070 1.00 11.47 C ATOM 187 CG LEU 23 -49.198 -20.115 11.425 1.00 11.47 C ATOM 188 CD1 LEU 23 -49.881 -20.842 12.595 1.00 11.47 C ATOM 189 CD2 LEU 23 -47.704 -19.867 11.672 1.00 11.47 C ATOM 190 C LEU 23 -49.099 -23.119 10.909 1.00 11.47 C ATOM 191 O LEU 23 -50.068 -23.855 10.732 1.00 11.47 O ATOM 192 N THR 24 -48.356 -23.155 12.031 1.00 11.50 N ATOM 193 CA THR 24 -48.734 -23.998 13.122 1.00 11.50 C ATOM 194 CB THR 24 -47.778 -25.128 13.367 1.00 11.50 C ATOM 195 OG1 THR 24 -48.318 -26.023 14.328 1.00 11.50 O ATOM 196 CG2 THR 24 -46.440 -24.553 13.865 1.00 11.50 C ATOM 197 C THR 24 -48.722 -23.140 14.341 1.00 11.50 C ATOM 198 O THR 24 -47.850 -22.289 14.506 1.00 11.50 O ATOM 199 N LYS 25 -49.714 -23.319 15.228 1.00 10.94 N ATOM 200 CA LYS 25 -49.694 -22.520 16.412 1.00 10.94 C ATOM 201 CB LYS 25 -50.849 -21.509 16.493 1.00 10.94 C ATOM 202 CG LYS 25 -50.690 -20.502 17.632 1.00 10.94 C ATOM 203 CD LYS 25 -51.622 -19.295 17.510 1.00 10.94 C ATOM 204 CE LYS 25 -51.465 -18.284 18.648 1.00 10.94 C ATOM 205 NZ LYS 25 -51.918 -18.882 19.924 1.00 10.94 N ATOM 206 C LYS 25 -49.821 -23.452 17.563 1.00 10.94 C ATOM 207 O LYS 25 -50.596 -24.405 17.520 1.00 10.94 O ATOM 208 N LEU 26 -49.029 -23.220 18.625 1.00 12.50 N ATOM 209 CA LEU 26 -49.178 -24.082 19.754 1.00 12.50 C ATOM 210 CB LEU 26 -47.864 -24.739 20.239 1.00 12.50 C ATOM 211 CG LEU 26 -46.865 -23.844 20.999 1.00 12.50 C ATOM 212 CD1 LEU 26 -47.328 -23.551 22.438 1.00 12.50 C ATOM 213 CD2 LEU 26 -45.449 -24.443 20.949 1.00 12.50 C ATOM 214 C LEU 26 -49.779 -23.264 20.844 1.00 12.50 C ATOM 215 O LEU 26 -49.381 -22.121 21.070 1.00 12.50 O ATOM 216 N GLY 27 -50.780 -23.833 21.537 1.00 12.63 N ATOM 217 CA GLY 27 -51.427 -23.119 22.592 1.00 12.63 C ATOM 218 C GLY 27 -52.847 -23.571 22.608 1.00 12.63 C ATOM 219 O GLY 27 -53.223 -24.503 21.898 1.00 12.63 O ATOM 220 N ALA 28 -53.676 -22.912 23.434 1.00 15.00 N ATOM 221 CA ALA 28 -55.053 -23.284 23.509 1.00 15.00 C ATOM 222 CB ALA 28 -55.441 -23.936 24.846 1.00 15.00 C ATOM 223 C ALA 28 -55.851 -22.033 23.376 1.00 15.00 C ATOM 224 O ALA 28 -55.347 -20.935 23.601 1.00 15.00 O ATOM 225 N ILE 29 -57.128 -22.173 22.976 1.00 15.00 N ATOM 226 CA ILE 29 -57.962 -21.019 22.835 1.00 15.00 C ATOM 227 CB ILE 29 -59.335 -21.345 22.318 1.00 15.00 C ATOM 228 CG2 ILE 29 -59.997 -22.356 23.270 1.00 15.00 C ATOM 229 CG1 ILE 29 -60.138 -20.053 22.091 1.00 15.00 C ATOM 230 CD1 ILE 29 -61.431 -20.262 21.303 1.00 15.00 C ATOM 231 C ILE 29 -58.084 -20.393 24.185 1.00 15.00 C ATOM 232 O ILE 29 -57.962 -19.178 24.328 1.00 15.00 O ATOM 233 N TYR 30 -58.306 -21.218 25.224 1.00 15.00 N ATOM 234 CA TYR 30 -58.398 -20.691 26.550 1.00 15.00 C ATOM 235 CB TYR 30 -59.510 -21.318 27.410 1.00 15.00 C ATOM 236 CG TYR 30 -60.814 -20.824 26.877 1.00 15.00 C ATOM 237 CD1 TYR 30 -61.432 -21.444 25.814 1.00 15.00 C ATOM 238 CD2 TYR 30 -61.417 -19.729 27.451 1.00 15.00 C ATOM 239 CE1 TYR 30 -62.633 -20.976 25.333 1.00 15.00 C ATOM 240 CE2 TYR 30 -62.617 -19.256 26.976 1.00 15.00 C ATOM 241 CZ TYR 30 -63.227 -19.881 25.915 1.00 15.00 C ATOM 242 OH TYR 30 -64.459 -19.398 25.425 1.00 15.00 H ATOM 243 C TYR 30 -57.087 -20.951 27.204 1.00 15.00 C ATOM 244 O TYR 30 -56.498 -22.018 27.047 1.00 15.00 O ATOM 245 N ASP 31 -56.580 -19.947 27.940 1.00 15.00 N ATOM 246 CA ASP 31 -55.287 -20.087 28.528 1.00 15.00 C ATOM 247 CB ASP 31 -54.611 -18.740 28.845 1.00 15.00 C ATOM 248 CG ASP 31 -53.181 -19.015 29.293 1.00 15.00 C ATOM 249 OD1 ASP 31 -52.779 -20.208 29.307 1.00 15.00 O ATOM 250 OD2 ASP 31 -52.470 -18.029 29.629 1.00 15.00 O ATOM 251 C ASP 31 -55.400 -20.837 29.813 1.00 15.00 C ATOM 252 O ASP 31 -55.881 -20.316 30.819 1.00 15.00 O ATOM 253 N LYS 32 -54.966 -22.109 29.790 1.00 15.00 N ATOM 254 CA LYS 32 -54.887 -22.888 30.984 1.00 15.00 C ATOM 255 CB LYS 32 -55.496 -24.297 30.851 1.00 15.00 C ATOM 256 CG LYS 32 -57.017 -24.290 30.672 1.00 15.00 C ATOM 257 CD LYS 32 -57.594 -25.631 30.212 1.00 15.00 C ATOM 258 CE LYS 32 -57.326 -25.944 28.737 1.00 15.00 C ATOM 259 NZ LYS 32 -57.915 -27.255 28.381 1.00 15.00 N ATOM 260 C LYS 32 -53.419 -23.047 31.180 1.00 15.00 C ATOM 261 O LYS 32 -52.740 -23.626 30.333 1.00 15.00 O ATOM 262 N THR 33 -52.873 -22.518 32.289 1.00 15.00 N ATOM 263 CA THR 33 -51.450 -22.609 32.401 1.00 15.00 C ATOM 264 CB THR 33 -50.807 -21.285 32.735 1.00 15.00 C ATOM 265 OG1 THR 33 -49.399 -21.430 32.832 1.00 15.00 O ATOM 266 CG2 THR 33 -51.402 -20.712 34.035 1.00 15.00 C ATOM 267 C THR 33 -51.075 -23.630 33.426 1.00 15.00 C ATOM 268 O THR 33 -50.729 -23.308 34.562 1.00 15.00 O ATOM 269 N LYS 34 -51.131 -24.918 33.045 1.00 15.00 N ATOM 270 CA LYS 34 -50.651 -25.909 33.959 1.00 15.00 C ATOM 271 CB LYS 34 -50.822 -27.346 33.435 1.00 15.00 C ATOM 272 CG LYS 34 -52.283 -27.791 33.320 1.00 15.00 C ATOM 273 CD LYS 34 -53.023 -27.850 34.658 1.00 15.00 C ATOM 274 CE LYS 34 -52.803 -29.159 35.420 1.00 15.00 C ATOM 275 NZ LYS 34 -51.468 -29.161 36.060 1.00 15.00 N ATOM 276 C LYS 34 -49.190 -25.630 34.044 1.00 15.00 C ATOM 277 O LYS 34 -48.594 -25.600 35.119 1.00 15.00 O ATOM 278 N LYS 35 -48.597 -25.394 32.860 1.00 13.93 N ATOM 279 CA LYS 35 -47.217 -25.051 32.702 1.00 13.93 C ATOM 280 CB LYS 35 -46.353 -26.206 32.168 1.00 13.93 C ATOM 281 CG LYS 35 -46.146 -27.333 33.181 1.00 13.93 C ATOM 282 CD LYS 35 -45.370 -26.898 34.426 1.00 13.93 C ATOM 283 CE LYS 35 -43.853 -26.902 34.231 1.00 13.93 C ATOM 284 NZ LYS 35 -43.455 -25.829 33.294 1.00 13.93 N ATOM 285 C LYS 35 -47.209 -23.980 31.663 1.00 13.93 C ATOM 286 O LYS 35 -48.220 -23.749 31.001 1.00 13.93 O ATOM 287 N TYR 36 -46.077 -23.274 31.499 1.00 12.61 N ATOM 288 CA TYR 36 -46.078 -22.253 30.496 1.00 12.61 C ATOM 289 CB TYR 36 -45.599 -20.880 30.993 1.00 12.61 C ATOM 290 CG TYR 36 -45.748 -19.933 29.853 1.00 12.61 C ATOM 291 CD1 TYR 36 -44.766 -19.813 28.898 1.00 12.61 C ATOM 292 CD2 TYR 36 -46.885 -19.167 29.739 1.00 12.61 C ATOM 293 CE1 TYR 36 -44.916 -18.936 27.848 1.00 12.61 C ATOM 294 CE2 TYR 36 -47.040 -18.290 28.693 1.00 12.61 C ATOM 295 CZ TYR 36 -46.055 -18.174 27.744 1.00 12.61 C ATOM 296 OH TYR 36 -46.214 -17.275 26.668 1.00 12.61 H ATOM 297 C TYR 36 -45.139 -22.693 29.424 1.00 12.61 C ATOM 298 O TYR 36 -43.991 -23.045 29.691 1.00 12.61 O ATOM 299 N TRP 37 -45.628 -22.695 28.171 1.00 12.49 N ATOM 300 CA TRP 37 -44.828 -23.114 27.060 1.00 12.49 C ATOM 301 CB TRP 37 -45.388 -24.360 26.354 1.00 12.49 C ATOM 302 CG TRP 37 -44.481 -24.953 25.305 1.00 12.49 C ATOM 303 CD2 TRP 37 -43.562 -26.023 25.568 1.00 12.49 C ATOM 304 CD1 TRP 37 -44.357 -24.652 23.980 1.00 12.49 C ATOM 305 NE1 TRP 37 -43.415 -25.470 23.402 1.00 12.49 N ATOM 306 CE2 TRP 37 -42.919 -26.320 24.368 1.00 12.49 C ATOM 307 CE3 TRP 37 -43.283 -26.706 26.716 1.00 12.49 C ATOM 308 CZ2 TRP 37 -41.980 -27.310 24.298 1.00 12.49 C ATOM 309 CZ3 TRP 37 -42.333 -27.701 26.644 1.00 12.49 C ATOM 310 CH2 TRP 37 -41.694 -27.996 25.457 1.00 12.49 H ATOM 311 C TRP 37 -44.877 -21.985 26.084 1.00 12.49 C ATOM 312 O TRP 37 -45.653 -21.047 26.260 1.00 12.49 O ATOM 313 N VAL 38 -44.036 -22.024 25.032 1.00 10.83 N ATOM 314 CA VAL 38 -44.078 -20.931 24.108 1.00 10.83 C ATOM 315 CB VAL 38 -42.777 -20.700 23.385 1.00 10.83 C ATOM 316 CG1 VAL 38 -41.734 -20.225 24.413 1.00 10.83 C ATOM 317 CG2 VAL 38 -42.353 -21.994 22.669 1.00 10.83 C ATOM 318 C VAL 38 -45.168 -21.199 23.116 1.00 10.83 C ATOM 319 O VAL 38 -45.051 -22.041 22.227 1.00 10.83 O ATOM 320 N TYR 39 -46.281 -20.460 23.275 1.00 9.95 N ATOM 321 CA TYR 39 -47.443 -20.541 22.446 1.00 9.95 C ATOM 322 CB TYR 39 -48.582 -19.634 22.945 1.00 9.95 C ATOM 323 CG TYR 39 -48.936 -20.074 24.323 1.00 9.95 C ATOM 324 CD1 TYR 39 -48.195 -19.650 25.402 1.00 9.95 C ATOM 325 CD2 TYR 39 -50.008 -20.909 24.536 1.00 9.95 C ATOM 326 CE1 TYR 39 -48.515 -20.055 26.676 1.00 9.95 C ATOM 327 CE2 TYR 39 -50.332 -21.317 25.808 1.00 9.95 C ATOM 328 CZ TYR 39 -49.585 -20.889 26.880 1.00 9.95 C ATOM 329 OH TYR 39 -49.913 -21.305 28.187 1.00 9.95 H ATOM 330 C TYR 39 -47.061 -20.045 21.093 1.00 9.95 C ATOM 331 O TYR 39 -47.463 -20.613 20.080 1.00 9.95 O ATOM 332 N GLN 40 -46.255 -18.965 21.052 1.00 9.18 N ATOM 333 CA GLN 40 -45.899 -18.376 19.797 1.00 9.18 C ATOM 334 CB GLN 40 -44.917 -17.195 19.907 1.00 9.18 C ATOM 335 CG GLN 40 -45.541 -15.918 20.474 1.00 9.18 C ATOM 336 CD GLN 40 -46.063 -16.223 21.869 1.00 9.18 C ATOM 337 OE1 GLN 40 -47.211 -16.631 22.028 1.00 9.18 O ATOM 338 NE2 GLN 40 -45.204 -16.027 22.905 1.00 9.18 N ATOM 339 C GLN 40 -45.272 -19.423 18.946 1.00 9.18 C ATOM 340 O GLN 40 -44.248 -20.011 19.292 1.00 9.18 O ATOM 341 N GLY 41 -45.922 -19.680 17.797 1.00 8.11 N ATOM 342 CA GLY 41 -45.458 -20.642 16.848 1.00 8.11 C ATOM 343 C GLY 41 -45.510 -19.953 15.525 1.00 8.11 C ATOM 344 O GLY 41 -46.208 -18.952 15.376 1.00 8.11 O ATOM 345 N LYS 42 -44.786 -20.483 14.520 1.00 7.18 N ATOM 346 CA LYS 42 -44.719 -19.795 13.265 1.00 7.18 C ATOM 347 CB LYS 42 -43.368 -19.085 13.079 1.00 7.18 C ATOM 348 CG LYS 42 -43.098 -18.049 14.173 1.00 7.18 C ATOM 349 CD LYS 42 -44.205 -17.001 14.309 1.00 7.18 C ATOM 350 CE LYS 42 -44.018 -16.062 15.503 1.00 7.18 C ATOM 351 NZ LYS 42 -45.178 -15.150 15.618 1.00 7.18 N ATOM 352 C LYS 42 -44.943 -20.782 12.155 1.00 7.18 C ATOM 353 O LYS 42 -45.414 -21.894 12.388 1.00 7.18 O ATOM 354 N PRO 43 -44.671 -20.384 10.935 1.00 7.08 N ATOM 355 CA PRO 43 -44.891 -21.297 9.845 1.00 7.08 C ATOM 356 CD PRO 43 -44.972 -19.015 10.530 1.00 7.08 C ATOM 357 CB PRO 43 -44.884 -20.450 8.574 1.00 7.08 C ATOM 358 CG PRO 43 -45.404 -19.086 9.058 1.00 7.08 C ATOM 359 C PRO 43 -43.951 -22.454 9.805 1.00 7.08 C ATOM 360 O PRO 43 -42.806 -22.321 10.235 1.00 7.08 O ATOM 361 N VAL 44 -44.430 -23.606 9.296 1.00 6.34 N ATOM 362 CA VAL 44 -43.601 -24.768 9.212 1.00 6.34 C ATOM 363 CB VAL 44 -44.139 -25.937 9.988 1.00 6.34 C ATOM 364 CG1 VAL 44 -45.545 -26.278 9.465 1.00 6.34 C ATOM 365 CG2 VAL 44 -43.136 -27.098 9.879 1.00 6.34 C ATOM 366 C VAL 44 -43.503 -25.172 7.777 1.00 6.34 C ATOM 367 O VAL 44 -44.500 -25.384 7.091 1.00 6.34 O ATOM 368 N MET 45 -42.262 -25.280 7.279 1.00 5.71 N ATOM 369 CA MET 45 -42.036 -25.676 5.923 1.00 5.71 C ATOM 370 CB MET 45 -40.704 -25.161 5.357 1.00 5.71 C ATOM 371 CG MET 45 -39.498 -25.875 5.965 1.00 5.71 C ATOM 372 SD MET 45 -39.393 -25.730 7.773 1.00 5.71 S ATOM 373 CE MET 45 -38.721 -24.045 7.772 1.00 5.71 C ATOM 374 C MET 45 -41.974 -27.167 5.905 1.00 5.71 C ATOM 375 O MET 45 -41.870 -27.816 6.945 1.00 5.71 O ATOM 376 N PRO 46 -42.051 -27.732 4.738 1.00 4.79 N ATOM 377 CA PRO 46 -41.955 -29.160 4.647 1.00 4.79 C ATOM 378 CD PRO 46 -42.871 -27.170 3.679 1.00 4.79 C ATOM 379 CB PRO 46 -42.411 -29.520 3.234 1.00 4.79 C ATOM 380 CG PRO 46 -43.381 -28.378 2.874 1.00 4.79 C ATOM 381 C PRO 46 -40.549 -29.542 4.975 1.00 4.79 C ATOM 382 O PRO 46 -39.658 -28.713 4.813 1.00 4.79 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.07 35.3 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 103.15 26.5 34 100.0 34 ARMSMC SURFACE . . . . . . . . 100.18 33.9 56 100.0 56 ARMSMC BURIED . . . . . . . . 57.51 41.7 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.52 40.6 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 87.08 41.4 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 102.29 17.6 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 86.19 44.4 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 100.17 20.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 79.59 48.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 78.20 52.4 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 67.25 76.9 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 71.11 54.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 125.34 0.0 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.19 25.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 88.96 28.6 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 112.36 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 87.19 25.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.58 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 76.58 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 83.09 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 76.58 50.0 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.33 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.33 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2952 CRMSCA SECONDARY STRUCTURE . . 8.73 17 100.0 17 CRMSCA SURFACE . . . . . . . . 10.69 29 100.0 29 CRMSCA BURIED . . . . . . . . 8.40 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.34 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 8.85 85 100.0 85 CRMSMC SURFACE . . . . . . . . 10.67 143 100.0 143 CRMSMC BURIED . . . . . . . . 8.64 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.10 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 11.84 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 10.85 84 100.0 84 CRMSSC SURFACE . . . . . . . . 12.56 127 100.0 127 CRMSSC BURIED . . . . . . . . 9.87 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.26 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 9.95 152 100.0 152 CRMSALL SURFACE . . . . . . . . 11.64 243 100.0 243 CRMSALL BURIED . . . . . . . . 9.33 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.126 0.208 0.197 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 3.813 0.204 0.225 17 100.0 17 ERRCA SURFACE . . . . . . . . 4.126 0.204 0.187 29 100.0 29 ERRCA BURIED . . . . . . . . 4.128 0.228 0.242 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.162 0.210 0.198 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 3.802 0.203 0.224 85 100.0 85 ERRMC SURFACE . . . . . . . . 4.148 0.205 0.188 143 100.0 143 ERRMC BURIED . . . . . . . . 4.230 0.233 0.243 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.749 0.228 0.195 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 4.699 0.228 0.196 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 4.490 0.231 0.221 84 100.0 84 ERRSC SURFACE . . . . . . . . 5.237 0.245 0.204 127 100.0 127 ERRSC BURIED . . . . . . . . 2.611 0.151 0.157 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.447 0.218 0.196 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 4.188 0.219 0.225 152 100.0 152 ERRALL SURFACE . . . . . . . . 4.672 0.224 0.195 243 100.0 243 ERRALL BURIED . . . . . . . . 3.414 0.191 0.200 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 4 19 35 35 DISTCA CA (P) 0.00 0.00 0.00 11.43 54.29 35 DISTCA CA (RMS) 0.00 0.00 0.00 4.66 7.40 DISTCA ALL (N) 1 4 5 28 137 296 296 DISTALL ALL (P) 0.34 1.35 1.69 9.46 46.28 296 DISTALL ALL (RMS) 0.43 1.36 1.65 3.98 7.05 DISTALL END of the results output