####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 30 ( 246), selected 30 , name T0548TS269_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 30 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS269_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 17 - 40 4.71 10.56 LONGEST_CONTINUOUS_SEGMENT: 24 18 - 41 4.78 10.11 LCS_AVERAGE: 62.19 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 18 - 30 1.63 14.21 LCS_AVERAGE: 28.29 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 18 - 27 0.98 14.93 LCS_AVERAGE: 17.52 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 30 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 17 V 17 3 10 24 0 3 3 3 4 7 9 11 13 13 14 18 20 21 21 21 22 24 24 24 LCS_GDT T 18 T 18 10 13 24 9 10 11 11 12 12 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT D 19 D 19 10 13 24 9 10 11 11 12 12 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT I 20 I 20 10 13 24 9 10 11 11 12 12 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT K 21 K 21 10 13 24 9 10 11 11 12 12 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT D 22 D 22 10 13 24 9 10 11 11 12 12 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT L 23 L 23 10 13 24 9 10 11 11 12 12 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT T 24 T 24 10 13 24 9 10 11 11 12 12 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT K 25 K 25 10 13 24 9 10 11 11 12 12 14 16 16 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT L 26 L 26 10 13 24 9 10 11 11 12 12 14 16 16 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT G 27 G 27 10 13 24 2 4 5 10 11 12 13 16 16 17 17 17 20 21 22 22 23 24 24 24 LCS_GDT A 28 A 28 5 13 24 4 10 11 11 12 12 14 16 16 17 18 21 22 22 22 23 23 24 24 24 LCS_GDT I 29 I 29 5 13 24 4 8 11 11 12 12 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT Y 30 Y 30 5 13 24 4 4 6 10 12 12 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT D 31 D 31 5 12 24 4 4 5 6 9 12 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT K 32 K 32 5 8 24 3 4 5 8 10 12 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT T 33 T 33 4 8 24 3 4 4 5 8 11 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT K 34 K 34 4 8 24 3 4 4 5 7 9 13 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT K 35 K 35 4 8 24 3 3 5 7 8 10 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT Y 36 Y 36 4 8 24 3 5 5 7 8 10 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT W 37 W 37 4 8 24 3 5 5 7 8 10 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT V 38 V 38 4 8 24 3 4 5 6 8 10 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT Y 39 Y 39 4 8 24 3 5 5 7 8 10 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT Q 40 Q 40 4 8 24 3 5 5 7 8 10 14 16 18 19 21 21 22 22 22 23 23 24 24 24 LCS_GDT G 41 G 41 4 6 24 4 4 4 5 5 7 8 10 13 16 18 19 20 21 22 23 23 24 24 24 LCS_GDT K 42 K 42 4 6 17 4 4 4 4 5 7 8 10 12 12 14 14 16 18 19 21 21 23 24 24 LCS_GDT P 43 P 43 4 6 9 4 4 4 4 5 7 8 10 12 12 14 14 16 18 19 20 20 20 21 22 LCS_GDT V 44 V 44 4 6 9 4 4 4 4 5 6 6 7 7 8 8 14 15 18 19 20 20 20 21 22 LCS_GDT M 45 M 45 4 6 9 3 3 4 4 5 6 7 7 7 8 13 14 16 18 19 20 20 20 21 22 LCS_GDT P 46 P 46 4 4 9 3 3 4 4 4 4 5 7 7 8 8 8 9 10 10 13 15 17 21 21 LCS_AVERAGE LCS_A: 36.00 ( 17.52 28.29 62.19 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 10 11 11 12 12 14 16 18 19 21 21 22 22 22 23 23 24 24 24 GDT PERCENT_AT 25.71 28.57 31.43 31.43 34.29 34.29 40.00 45.71 51.43 54.29 60.00 60.00 62.86 62.86 62.86 65.71 65.71 68.57 68.57 68.57 GDT RMS_LOCAL 0.29 0.41 0.73 0.73 1.23 1.23 2.20 2.55 3.12 3.24 3.67 3.67 3.90 3.90 3.90 4.35 4.35 4.71 4.71 4.71 GDT RMS_ALL_AT 14.34 14.36 14.09 14.09 13.86 13.86 13.23 13.56 9.63 9.67 10.11 10.11 10.27 10.27 10.27 9.86 9.86 10.56 10.56 10.56 # Checking swapping # possible swapping detected: D 22 D 22 # possible swapping detected: Y 30 Y 30 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 17 V 17 9.219 0 0.603 0.818 12.414 4.643 3.741 LGA T 18 T 18 2.740 0 0.588 1.353 5.066 53.333 53.061 LGA D 19 D 19 3.001 0 0.036 0.848 3.953 59.405 53.869 LGA I 20 I 20 2.227 0 0.039 1.340 4.493 73.095 62.857 LGA K 21 K 21 0.213 0 0.017 0.944 6.429 95.238 68.519 LGA D 22 D 22 1.078 0 0.123 0.946 3.893 85.952 70.060 LGA L 23 L 23 0.689 0 0.109 1.167 2.815 88.214 82.024 LGA T 24 T 24 1.475 0 0.088 0.148 2.455 77.381 71.973 LGA K 25 K 25 2.064 0 0.127 0.498 5.302 63.571 53.757 LGA L 26 L 26 1.621 0 0.633 0.557 5.420 71.429 56.131 LGA G 27 G 27 3.993 0 0.448 0.448 3.993 50.357 50.357 LGA A 28 A 28 2.262 0 0.027 0.046 2.464 64.762 64.762 LGA I 29 I 29 2.372 0 0.072 1.389 7.774 66.786 51.250 LGA Y 30 Y 30 2.031 0 0.046 0.423 5.159 66.786 50.952 LGA D 31 D 31 3.783 0 0.035 0.530 7.529 42.500 28.155 LGA K 32 K 32 3.311 0 0.044 0.660 7.230 53.571 35.820 LGA T 33 T 33 3.920 0 0.651 0.781 6.603 36.310 34.286 LGA K 34 K 34 5.162 0 0.609 0.939 10.168 21.667 19.365 LGA K 35 K 35 9.990 0 0.688 0.604 16.533 2.024 0.899 LGA Y 36 Y 36 10.205 0 0.047 1.227 15.972 0.595 0.198 LGA W 37 W 37 8.539 0 0.075 1.255 10.028 1.429 4.796 LGA V 38 V 38 10.537 0 0.030 1.028 14.438 0.476 0.272 LGA Y 39 Y 39 12.309 0 0.061 0.291 16.307 0.000 0.000 LGA Q 40 Q 40 16.573 0 0.366 0.880 20.915 0.000 0.000 LGA G 41 G 41 21.963 0 0.685 0.685 24.491 0.000 0.000 LGA K 42 K 42 26.415 0 0.128 0.887 33.481 0.000 0.000 LGA P 43 P 43 27.505 0 0.152 0.319 29.743 0.000 0.000 LGA V 44 V 44 28.242 0 0.107 0.924 28.754 0.000 0.000 LGA M 45 M 45 30.621 0 0.611 1.423 35.814 0.000 0.000 LGA P 46 P 46 28.574 0 0.650 0.628 31.656 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 30 120 120 100.00 246 246 100.00 35 SUMMARY(RMSD_GDC): 8.511 8.444 9.026 30.844 26.203 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 30 35 4.0 16 2.55 42.857 40.142 0.605 LGA_LOCAL RMSD: 2.546 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.562 Number of assigned atoms: 30 Std_ASGN_ATOMS RMSD: 8.511 Standard rmsd on all 30 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.549469 * X + 0.782883 * Y + 0.291853 * Z + -103.827332 Y_new = 0.785563 * X + -0.365109 * Y + -0.499586 * Z + -7.437824 Z_new = -0.284559 * X + 0.503776 * Y + -0.815620 * Z + 56.701984 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.960434 0.288546 2.588289 [DEG: 55.0288 16.5325 148.2980 ] ZXZ: 0.528714 2.524596 -0.514174 [DEG: 30.2931 144.6487 -29.4600 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS269_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS269_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 30 35 4.0 16 2.55 40.142 8.51 REMARK ---------------------------------------------------------- MOLECULE T0548TS269_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 137 N VAL 17 -33.749 -5.496 31.535 1.00 99.99 N ATOM 138 CA VAL 17 -34.902 -6.395 31.374 1.00 99.99 C ATOM 139 C VAL 17 -34.470 -7.842 31.562 1.00 99.99 C ATOM 140 O VAL 17 -33.450 -8.219 30.991 1.00 99.99 O ATOM 141 CB VAL 17 -35.644 -6.281 30.045 1.00 99.99 C ATOM 142 CG1 VAL 17 -37.074 -6.763 30.267 1.00 99.99 C ATOM 143 CG2 VAL 17 -35.750 -4.848 29.531 1.00 99.99 C ATOM 144 N THR 18 -35.266 -8.607 32.313 1.00 99.99 N ATOM 145 CA THR 18 -35.011 -10.000 32.620 1.00 99.99 C ATOM 146 C THR 18 -35.665 -10.866 31.553 1.00 99.99 C ATOM 147 O THR 18 -36.635 -10.449 30.924 1.00 99.99 O ATOM 148 CB THR 18 -35.648 -10.254 33.983 1.00 99.99 C ATOM 149 OG1 THR 18 -37.058 -10.306 34.009 1.00 99.99 O ATOM 150 CG2 THR 18 -35.428 -9.286 35.143 1.00 99.99 C ATOM 151 N ASP 19 -35.308 -12.118 31.260 1.00 99.99 N ATOM 152 CA ASP 19 -35.904 -13.016 30.291 1.00 99.99 C ATOM 153 C ASP 19 -37.383 -13.291 30.527 1.00 99.99 C ATOM 154 O ASP 19 -38.136 -13.077 29.579 1.00 99.99 O ATOM 155 CB ASP 19 -35.082 -14.302 30.300 1.00 99.99 C ATOM 156 CG ASP 19 -35.564 -15.323 29.279 1.00 99.99 C ATOM 157 OD1 ASP 19 -35.461 -15.157 28.044 1.00 99.99 O ATOM 158 OD2 ASP 19 -35.998 -16.416 29.703 1.00 99.99 O ATOM 159 N ILE 20 -37.779 -13.567 31.771 1.00 99.99 N ATOM 160 CA ILE 20 -39.209 -13.684 31.982 1.00 99.99 C ATOM 161 C ILE 20 -40.007 -12.415 31.723 1.00 99.99 C ATOM 162 O ILE 20 -41.110 -12.514 31.189 1.00 99.99 O ATOM 163 CB ILE 20 -39.536 -14.375 33.303 1.00 99.99 C ATOM 164 CG1 ILE 20 -40.964 -14.914 33.304 1.00 99.99 C ATOM 165 CG2 ILE 20 -39.200 -13.459 34.476 1.00 99.99 C ATOM 166 CD1 ILE 20 -41.485 -15.944 32.307 1.00 99.99 C ATOM 167 N LYS 21 -39.538 -11.219 32.085 1.00 99.99 N ATOM 168 CA LYS 21 -40.301 -10.044 31.714 1.00 99.99 C ATOM 169 C LYS 21 -40.267 -9.875 30.202 1.00 99.99 C ATOM 170 O LYS 21 -41.311 -9.633 29.602 1.00 99.99 O ATOM 171 CB LYS 21 -39.819 -8.875 32.567 1.00 99.99 C ATOM 172 CG LYS 21 -40.761 -7.675 32.555 1.00 99.99 C ATOM 173 CD LYS 21 -41.990 -7.847 33.443 1.00 99.99 C ATOM 174 CE LYS 21 -41.624 -7.516 34.887 1.00 99.99 C ATOM 175 NZ LYS 21 -42.824 -7.222 35.685 1.00 99.99 N ATOM 176 N ASP 22 -39.107 -9.980 29.547 1.00 99.99 N ATOM 177 CA ASP 22 -39.030 -9.979 28.100 1.00 99.99 C ATOM 178 C ASP 22 -40.052 -10.915 27.470 1.00 99.99 C ATOM 179 O ASP 22 -40.785 -10.395 26.632 1.00 99.99 O ATOM 180 CB ASP 22 -37.641 -10.366 27.602 1.00 99.99 C ATOM 181 CG ASP 22 -37.477 -10.490 26.094 1.00 99.99 C ATOM 182 OD1 ASP 22 -37.146 -11.548 25.518 1.00 99.99 O ATOM 183 OD2 ASP 22 -37.630 -9.423 25.460 1.00 99.99 O ATOM 184 N LEU 23 -40.058 -12.229 27.707 1.00 99.99 N ATOM 185 CA LEU 23 -41.071 -13.206 27.358 1.00 99.99 C ATOM 186 C LEU 23 -42.486 -12.651 27.432 1.00 99.99 C ATOM 187 O LEU 23 -43.324 -13.155 26.688 1.00 99.99 O ATOM 188 CB LEU 23 -40.957 -14.416 28.282 1.00 99.99 C ATOM 189 CG LEU 23 -41.428 -15.723 27.651 1.00 99.99 C ATOM 190 CD1 LEU 23 -40.344 -16.251 26.716 1.00 99.99 C ATOM 191 CD2 LEU 23 -41.778 -16.764 28.710 1.00 99.99 C ATOM 192 N THR 24 -42.875 -12.021 28.543 1.00 99.99 N ATOM 193 CA THR 24 -44.261 -11.724 28.841 1.00 99.99 C ATOM 194 C THR 24 -44.666 -10.477 28.067 1.00 99.99 C ATOM 195 O THR 24 -45.871 -10.323 27.883 1.00 99.99 O ATOM 196 CB THR 24 -44.529 -11.663 30.342 1.00 99.99 C ATOM 197 OG1 THR 24 -43.617 -10.777 30.951 1.00 99.99 O ATOM 198 CG2 THR 24 -44.401 -13.054 30.958 1.00 99.99 C ATOM 199 N LYS 25 -43.737 -9.616 27.644 1.00 99.99 N ATOM 200 CA LYS 25 -44.029 -8.578 26.675 1.00 99.99 C ATOM 201 C LYS 25 -44.269 -9.164 25.291 1.00 99.99 C ATOM 202 O LYS 25 -45.236 -8.770 24.643 1.00 99.99 O ATOM 203 CB LYS 25 -42.878 -7.577 26.679 1.00 99.99 C ATOM 204 CG LYS 25 -43.276 -6.342 25.876 1.00 99.99 C ATOM 205 CD LYS 25 -42.071 -5.431 25.652 1.00 99.99 C ATOM 206 CE LYS 25 -42.317 -4.291 24.668 1.00 99.99 C ATOM 207 NZ LYS 25 -41.140 -3.436 24.447 1.00 99.99 N ATOM 208 N LEU 26 -43.383 -10.030 24.795 1.00 99.99 N ATOM 209 CA LEU 26 -43.480 -10.677 23.501 1.00 99.99 C ATOM 210 C LEU 26 -42.886 -12.079 23.496 1.00 99.99 C ATOM 211 O LEU 26 -41.717 -12.218 23.851 1.00 99.99 O ATOM 212 CB LEU 26 -42.780 -9.763 22.500 1.00 99.99 C ATOM 213 CG LEU 26 -42.667 -10.496 21.167 1.00 99.99 C ATOM 214 CD1 LEU 26 -43.946 -10.604 20.342 1.00 99.99 C ATOM 215 CD2 LEU 26 -41.697 -9.596 20.407 1.00 99.99 C ATOM 216 N GLY 27 -43.691 -13.117 23.258 1.00 99.99 N ATOM 217 CA GLY 27 -43.298 -14.510 23.329 1.00 99.99 C ATOM 218 C GLY 27 -44.374 -15.413 23.914 1.00 99.99 C ATOM 219 O GLY 27 -44.917 -16.178 23.120 1.00 99.99 O ATOM 220 N ALA 28 -44.634 -15.488 25.221 1.00 99.99 N ATOM 221 CA ALA 28 -45.484 -16.531 25.757 1.00 99.99 C ATOM 222 C ALA 28 -46.288 -16.047 26.954 1.00 99.99 C ATOM 223 O ALA 28 -45.995 -15.029 27.577 1.00 99.99 O ATOM 224 CB ALA 28 -44.540 -17.677 26.113 1.00 99.99 C ATOM 225 N ILE 29 -47.289 -16.852 27.317 1.00 99.99 N ATOM 226 CA ILE 29 -48.176 -16.646 28.445 1.00 99.99 C ATOM 227 C ILE 29 -48.810 -17.934 28.951 1.00 99.99 C ATOM 228 O ILE 29 -49.251 -18.760 28.154 1.00 99.99 O ATOM 229 CB ILE 29 -49.191 -15.551 28.126 1.00 99.99 C ATOM 230 CG1 ILE 29 -49.722 -14.892 29.396 1.00 99.99 C ATOM 231 CG2 ILE 29 -50.375 -16.161 27.381 1.00 99.99 C ATOM 232 CD1 ILE 29 -48.918 -13.672 29.835 1.00 99.99 C ATOM 233 N TYR 30 -48.966 -18.145 30.259 1.00 99.99 N ATOM 234 CA TYR 30 -50.021 -19.021 30.729 1.00 99.99 C ATOM 235 C TYR 30 -51.430 -18.456 30.631 1.00 99.99 C ATOM 236 O TYR 30 -51.715 -17.388 31.169 1.00 99.99 O ATOM 237 CB TYR 30 -49.733 -19.397 32.180 1.00 99.99 C ATOM 238 CG TYR 30 -50.558 -20.426 32.912 1.00 99.99 C ATOM 239 CD1 TYR 30 -51.706 -19.985 33.583 1.00 99.99 C ATOM 240 CD2 TYR 30 -50.137 -21.760 32.982 1.00 99.99 C ATOM 241 CE1 TYR 30 -52.423 -20.834 34.435 1.00 99.99 C ATOM 242 CE2 TYR 30 -50.869 -22.638 33.789 1.00 99.99 C ATOM 243 CZ TYR 30 -52.020 -22.184 34.464 1.00 99.99 C ATOM 244 OH TYR 30 -52.824 -23.118 35.048 1.00 99.99 H ATOM 245 N ASP 31 -52.303 -19.163 29.912 1.00 99.99 N ATOM 246 CA ASP 31 -53.738 -19.016 30.058 1.00 99.99 C ATOM 247 C ASP 31 -54.334 -20.415 30.000 1.00 99.99 C ATOM 248 O ASP 31 -54.595 -20.881 28.893 1.00 99.99 O ATOM 249 CB ASP 31 -54.124 -17.947 29.040 1.00 99.99 C ATOM 250 CG ASP 31 -55.635 -17.755 29.007 1.00 99.99 C ATOM 251 OD1 ASP 31 -56.183 -17.930 27.898 1.00 99.99 O ATOM 252 OD2 ASP 31 -56.250 -17.517 30.069 1.00 99.99 O ATOM 253 N LYS 32 -54.621 -21.056 31.135 1.00 99.99 N ATOM 254 CA LYS 32 -55.039 -22.437 31.263 1.00 99.99 C ATOM 255 C LYS 32 -54.003 -23.471 30.848 1.00 99.99 C ATOM 256 O LYS 32 -53.532 -24.238 31.685 1.00 99.99 O ATOM 257 CB LYS 32 -56.386 -22.675 30.587 1.00 99.99 C ATOM 258 CG LYS 32 -57.506 -21.690 30.909 1.00 99.99 C ATOM 259 CD LYS 32 -57.696 -21.388 32.394 1.00 99.99 C ATOM 260 CE LYS 32 -58.857 -20.402 32.494 1.00 99.99 C ATOM 261 NZ LYS 32 -59.381 -20.130 33.842 1.00 99.99 N ATOM 262 N THR 33 -53.658 -23.537 29.560 1.00 99.99 N ATOM 263 CA THR 33 -52.413 -24.055 29.030 1.00 99.99 C ATOM 264 C THR 33 -51.450 -22.924 28.697 1.00 99.99 C ATOM 265 O THR 33 -51.840 -21.770 28.855 1.00 99.99 O ATOM 266 CB THR 33 -52.735 -24.797 27.736 1.00 99.99 C ATOM 267 OG1 THR 33 -53.606 -24.090 26.881 1.00 99.99 O ATOM 268 CG2 THR 33 -53.246 -26.210 27.998 1.00 99.99 C ATOM 269 N LYS 34 -50.204 -23.134 28.266 1.00 99.99 N ATOM 270 CA LYS 34 -49.191 -22.192 27.831 1.00 99.99 C ATOM 271 C LYS 34 -49.176 -21.970 26.325 1.00 99.99 C ATOM 272 O LYS 34 -49.088 -22.877 25.500 1.00 99.99 O ATOM 273 CB LYS 34 -47.795 -22.586 28.301 1.00 99.99 C ATOM 274 CG LYS 34 -47.736 -22.822 29.807 1.00 99.99 C ATOM 275 CD LYS 34 -46.475 -23.563 30.244 1.00 99.99 C ATOM 276 CE LYS 34 -46.617 -24.303 31.571 1.00 99.99 C ATOM 277 NZ LYS 34 -45.441 -24.814 32.293 1.00 99.99 N ATOM 278 N LYS 35 -49.426 -20.722 25.923 1.00 99.99 N ATOM 279 CA LYS 35 -49.752 -20.250 24.591 1.00 99.99 C ATOM 280 C LYS 35 -48.778 -19.152 24.187 1.00 99.99 C ATOM 281 O LYS 35 -48.161 -18.467 25.000 1.00 99.99 O ATOM 282 CB LYS 35 -51.197 -19.762 24.616 1.00 99.99 C ATOM 283 CG LYS 35 -52.260 -20.622 25.294 1.00 99.99 C ATOM 284 CD LYS 35 -53.690 -20.105 25.153 1.00 99.99 C ATOM 285 CE LYS 35 -54.716 -21.041 25.784 1.00 99.99 C ATOM 286 NZ LYS 35 -55.974 -20.313 26.017 1.00 99.99 N ATOM 287 N TYR 36 -48.682 -18.921 22.876 1.00 99.99 N ATOM 288 CA TYR 36 -48.013 -17.828 22.201 1.00 99.99 C ATOM 289 C TYR 36 -48.745 -16.502 22.356 1.00 99.99 C ATOM 290 O TYR 36 -49.971 -16.431 22.417 1.00 99.99 O ATOM 291 CB TYR 36 -47.771 -18.125 20.723 1.00 99.99 C ATOM 292 CG TYR 36 -47.188 -16.923 20.019 1.00 99.99 C ATOM 293 CD1 TYR 36 -48.016 -16.120 19.226 1.00 99.99 C ATOM 294 CD2 TYR 36 -45.829 -16.610 20.146 1.00 99.99 C ATOM 295 CE1 TYR 36 -47.521 -14.945 18.650 1.00 99.99 C ATOM 296 CE2 TYR 36 -45.319 -15.450 19.551 1.00 99.99 C ATOM 297 CZ TYR 36 -46.168 -14.592 18.825 1.00 99.99 C ATOM 298 OH TYR 36 -45.740 -13.373 18.389 1.00 99.99 H ATOM 299 N TRP 37 -48.021 -15.395 22.536 1.00 99.99 N ATOM 300 CA TRP 37 -48.585 -14.182 23.093 1.00 99.99 C ATOM 301 C TRP 37 -47.957 -12.870 22.642 1.00 99.99 C ATOM 302 O TRP 37 -46.731 -12.817 22.571 1.00 99.99 O ATOM 303 CB TRP 37 -48.572 -14.396 24.604 1.00 99.99 C ATOM 304 CG TRP 37 -48.815 -13.217 25.490 1.00 99.99 C ATOM 305 CD1 TRP 37 -47.843 -12.419 25.983 1.00 99.99 C ATOM 306 CD2 TRP 37 -50.068 -12.514 25.750 1.00 99.99 C ATOM 307 NE1 TRP 37 -48.407 -11.339 26.634 1.00 99.99 N ATOM 308 CE2 TRP 37 -49.781 -11.340 26.495 1.00 99.99 C ATOM 309 CE3 TRP 37 -51.425 -12.734 25.468 1.00 99.99 C ATOM 310 CZ2 TRP 37 -50.763 -10.409 26.853 1.00 99.99 C ATOM 311 CZ3 TRP 37 -52.425 -11.855 25.899 1.00 99.99 C ATOM 312 CH2 TRP 37 -52.112 -10.697 26.621 1.00 99.99 H ATOM 313 N VAL 38 -48.752 -11.814 22.457 1.00 99.99 N ATOM 314 CA VAL 38 -48.166 -10.504 22.257 1.00 99.99 C ATOM 315 C VAL 38 -49.052 -9.470 22.937 1.00 99.99 C ATOM 316 O VAL 38 -50.275 -9.587 22.899 1.00 99.99 O ATOM 317 CB VAL 38 -48.062 -10.173 20.771 1.00 99.99 C ATOM 318 CG1 VAL 38 -49.268 -10.400 19.865 1.00 99.99 C ATOM 319 CG2 VAL 38 -47.610 -8.722 20.639 1.00 99.99 C ATOM 320 N TYR 39 -48.452 -8.564 23.714 1.00 99.99 N ATOM 321 CA TYR 39 -49.187 -7.618 24.529 1.00 99.99 C ATOM 322 C TYR 39 -49.739 -6.482 23.680 1.00 99.99 C ATOM 323 O TYR 39 -49.180 -6.080 22.662 1.00 99.99 O ATOM 324 CB TYR 39 -48.242 -7.051 25.585 1.00 99.99 C ATOM 325 CG TYR 39 -48.864 -5.890 26.324 1.00 99.99 C ATOM 326 CD1 TYR 39 -48.614 -4.611 25.812 1.00 99.99 C ATOM 327 CD2 TYR 39 -49.743 -6.135 27.386 1.00 99.99 C ATOM 328 CE1 TYR 39 -49.211 -3.539 26.485 1.00 99.99 C ATOM 329 CE2 TYR 39 -50.288 -5.040 28.064 1.00 99.99 C ATOM 330 CZ TYR 39 -50.015 -3.729 27.626 1.00 99.99 C ATOM 331 OH TYR 39 -50.305 -2.610 28.350 1.00 99.99 H ATOM 332 N GLN 40 -51.022 -6.181 23.893 1.00 99.99 N ATOM 333 CA GLN 40 -51.741 -5.148 23.174 1.00 99.99 C ATOM 334 C GLN 40 -51.844 -3.842 23.949 1.00 99.99 C ATOM 335 O GLN 40 -52.428 -3.780 25.029 1.00 99.99 O ATOM 336 CB GLN 40 -53.104 -5.655 22.711 1.00 99.99 C ATOM 337 CG GLN 40 -53.243 -7.137 22.377 1.00 99.99 C ATOM 338 CD GLN 40 -53.688 -8.000 23.550 1.00 99.99 C ATOM 339 OE1 GLN 40 -54.780 -7.951 24.114 1.00 99.99 O ATOM 340 NE2 GLN 40 -52.849 -8.949 23.969 1.00 99.99 N ATOM 341 N GLY 41 -51.200 -2.808 23.404 1.00 99.99 N ATOM 342 CA GLY 41 -51.075 -1.525 24.067 1.00 99.99 C ATOM 343 C GLY 41 -50.294 -0.422 23.368 1.00 99.99 C ATOM 344 O GLY 41 -50.042 -0.609 22.180 1.00 99.99 O ATOM 345 N LYS 42 -49.931 0.686 24.019 1.00 99.99 N ATOM 346 CA LYS 42 -49.249 1.828 23.446 1.00 99.99 C ATOM 347 C LYS 42 -48.533 2.480 24.621 1.00 99.99 C ATOM 348 O LYS 42 -49.192 2.906 25.567 1.00 99.99 O ATOM 349 CB LYS 42 -50.252 2.657 22.648 1.00 99.99 C ATOM 350 CG LYS 42 -49.528 3.814 21.967 1.00 99.99 C ATOM 351 CD LYS 42 -50.406 4.792 21.191 1.00 99.99 C ATOM 352 CE LYS 42 -51.123 4.001 20.101 1.00 99.99 C ATOM 353 NZ LYS 42 -51.948 4.807 19.189 1.00 99.99 N ATOM 354 N PRO 43 -47.211 2.647 24.686 1.00 99.99 N ATOM 355 CA PRO 43 -46.446 2.903 25.891 1.00 99.99 C ATOM 356 C PRO 43 -46.583 4.335 26.388 1.00 99.99 C ATOM 357 O PRO 43 -46.171 5.303 25.753 1.00 99.99 O ATOM 358 CB PRO 43 -44.995 2.587 25.540 1.00 99.99 C ATOM 359 CG PRO 43 -44.929 2.759 24.026 1.00 99.99 C ATOM 360 CD PRO 43 -46.341 2.436 23.547 1.00 99.99 C ATOM 361 N VAL 44 -46.987 4.370 27.660 1.00 99.99 N ATOM 362 CA VAL 44 -47.499 5.456 28.473 1.00 99.99 C ATOM 363 C VAL 44 -48.054 4.875 29.766 1.00 99.99 C ATOM 364 O VAL 44 -48.462 3.717 29.817 1.00 99.99 O ATOM 365 CB VAL 44 -48.572 6.296 27.788 1.00 99.99 C ATOM 366 CG1 VAL 44 -49.941 5.632 27.664 1.00 99.99 C ATOM 367 CG2 VAL 44 -48.837 7.606 28.525 1.00 99.99 C ATOM 368 N MET 45 -47.992 5.665 30.840 1.00 99.99 N ATOM 369 CA MET 45 -48.048 5.215 32.217 1.00 99.99 C ATOM 370 C MET 45 -49.176 4.245 32.537 1.00 99.99 C ATOM 371 O MET 45 -48.812 3.210 33.093 1.00 99.99 O ATOM 372 CB MET 45 -47.824 6.424 33.120 1.00 99.99 C ATOM 373 CG MET 45 -47.955 6.145 34.614 1.00 99.99 C ATOM 374 SD MET 45 -49.594 5.588 35.139 1.00 99.99 S ATOM 375 CE MET 45 -49.099 4.441 36.448 1.00 99.99 C ATOM 376 N PRO 46 -50.446 4.390 32.153 1.00 99.99 N ATOM 377 CA PRO 46 -51.526 3.445 32.349 1.00 99.99 C ATOM 378 C PRO 46 -51.452 2.151 31.551 1.00 99.99 C ATOM 379 O PRO 46 -51.967 1.139 32.023 1.00 99.99 O ATOM 380 CB PRO 46 -52.829 4.213 32.139 1.00 99.99 C ATOM 381 CG PRO 46 -52.380 5.339 31.213 1.00 99.99 C ATOM 382 CD PRO 46 -50.992 5.672 31.754 1.00 99.99 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 246 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 76.90 50.0 58 85.3 68 ARMSMC SECONDARY STRUCTURE . . 55.86 66.7 33 97.1 34 ARMSMC SURFACE . . . . . . . . 81.71 47.9 48 85.7 56 ARMSMC BURIED . . . . . . . . 47.47 60.0 10 83.3 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.83 33.3 27 84.4 32 ARMSSC1 RELIABLE SIDE CHAINS . 75.92 37.5 24 82.8 29 ARMSSC1 SECONDARY STRUCTURE . . 84.98 35.3 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 72.50 39.1 23 85.2 27 ARMSSC1 BURIED . . . . . . . . 103.29 0.0 4 80.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.40 23.8 21 84.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 85.08 21.1 19 90.5 21 ARMSSC2 SECONDARY STRUCTURE . . 82.08 30.8 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 76.49 26.3 19 86.4 22 ARMSSC2 BURIED . . . . . . . . 132.07 0.0 2 66.7 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 90.68 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 91.84 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 96.60 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 90.68 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 45.69 83.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 45.69 83.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 76.48 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 45.69 83.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.51 (Number of atoms: 30) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.51 30 85.7 35 CRMSCA CRN = ALL/NP . . . . . 0.2837 CRMSCA SECONDARY STRUCTURE . . 5.94 17 100.0 17 CRMSCA SURFACE . . . . . . . . 8.56 25 86.2 29 CRMSCA BURIED . . . . . . . . 8.26 5 83.3 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.55 148 85.5 173 CRMSMC SECONDARY STRUCTURE . . 6.19 85 100.0 85 CRMSMC SURFACE . . . . . . . . 8.58 123 86.0 143 CRMSMC BURIED . . . . . . . . 8.35 25 83.3 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.74 126 80.8 156 CRMSSC RELIABLE SIDE CHAINS . 9.59 114 83.8 136 CRMSSC SECONDARY STRUCTURE . . 7.73 84 100.0 84 CRMSSC SURFACE . . . . . . . . 9.97 105 82.7 127 CRMSSC BURIED . . . . . . . . 8.47 21 72.4 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.13 246 83.1 296 CRMSALL SECONDARY STRUCTURE . . 7.06 152 100.0 152 CRMSALL SURFACE . . . . . . . . 9.28 205 84.4 243 CRMSALL BURIED . . . . . . . . 8.34 41 77.4 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.415 0.861 0.872 30 85.7 35 ERRCA SECONDARY STRUCTURE . . 94.505 0.897 0.903 17 100.0 17 ERRCA SURFACE . . . . . . . . 92.390 0.861 0.872 25 86.2 29 ERRCA BURIED . . . . . . . . 92.541 0.863 0.874 5 83.3 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.409 0.861 0.872 148 85.5 173 ERRMC SECONDARY STRUCTURE . . 94.358 0.894 0.901 85 100.0 85 ERRMC SURFACE . . . . . . . . 92.393 0.861 0.872 123 86.0 143 ERRMC BURIED . . . . . . . . 92.488 0.863 0.873 25 83.3 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.193 0.841 0.854 126 80.8 156 ERRSC RELIABLE SIDE CHAINS . 91.386 0.844 0.857 114 83.8 136 ERRSC SECONDARY STRUCTURE . . 92.797 0.867 0.876 84 100.0 84 ERRSC SURFACE . . . . . . . . 90.998 0.838 0.852 105 82.7 127 ERRSC BURIED . . . . . . . . 92.165 0.856 0.867 21 72.4 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.830 0.852 0.864 246 83.1 296 ERRALL SECONDARY STRUCTURE . . 93.538 0.880 0.888 152 100.0 152 ERRALL SURFACE . . . . . . . . 91.716 0.850 0.862 205 84.4 243 ERRALL BURIED . . . . . . . . 92.401 0.861 0.871 41 77.4 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 8 24 30 35 DISTCA CA (P) 0.00 0.00 2.86 22.86 68.57 35 DISTCA CA (RMS) 0.00 0.00 2.81 3.98 6.25 DISTCA ALL (N) 0 4 7 61 177 246 296 DISTALL ALL (P) 0.00 1.35 2.36 20.61 59.80 296 DISTALL ALL (RMS) 0.00 1.66 2.18 4.03 6.33 DISTALL END of the results output