####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 241), selected 35 , name T0548TS257_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS257_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 14 - 37 4.87 11.86 LCS_AVERAGE: 62.61 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 15 - 29 1.67 10.04 LONGEST_CONTINUOUS_SEGMENT: 15 16 - 30 1.68 11.11 LONGEST_CONTINUOUS_SEGMENT: 15 17 - 31 1.97 11.91 LCS_AVERAGE: 36.73 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 16 - 27 0.98 10.32 LCS_AVERAGE: 28.08 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 4 5 19 3 3 4 4 6 7 9 12 15 18 18 18 21 22 23 24 26 26 26 27 LCS_GDT F 13 F 13 4 5 19 3 3 4 4 6 7 10 12 16 18 18 19 21 22 23 24 26 26 26 27 LCS_GDT H 14 H 14 4 12 24 3 3 4 6 9 11 14 17 17 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT Y 15 Y 15 4 15 24 3 3 5 10 13 15 16 17 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT T 16 T 16 12 15 24 5 9 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT V 17 V 17 12 15 24 5 9 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT T 18 T 18 12 15 24 5 9 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT D 19 D 19 12 15 24 5 9 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT I 20 I 20 12 15 24 5 9 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT K 21 K 21 12 15 24 5 9 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT D 22 D 22 12 15 24 6 9 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT L 23 L 23 12 15 24 6 9 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT T 24 T 24 12 15 24 6 9 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT K 25 K 25 12 15 24 6 9 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT L 26 L 26 12 15 24 6 9 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT G 27 G 27 12 15 24 6 9 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT A 28 A 28 10 15 24 3 8 11 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT I 29 I 29 10 15 24 6 8 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT Y 30 Y 30 8 15 24 4 7 9 10 11 16 18 18 18 19 20 20 21 21 22 22 23 24 26 27 LCS_GDT D 31 D 31 8 15 24 4 7 9 9 12 16 18 18 18 19 20 20 21 21 22 22 23 24 26 27 LCS_GDT K 32 K 32 8 9 24 4 7 9 9 9 9 11 14 16 18 19 20 21 21 22 22 23 24 26 27 LCS_GDT T 33 T 33 8 9 24 4 7 9 9 9 9 11 11 13 15 18 20 21 21 22 22 23 24 26 27 LCS_GDT K 34 K 34 8 11 24 3 6 9 9 12 16 18 18 18 19 20 20 21 21 22 22 23 24 26 27 LCS_GDT K 35 K 35 11 12 24 4 9 10 11 13 16 18 18 18 19 20 20 21 21 22 22 23 24 26 27 LCS_GDT Y 36 Y 36 11 12 24 4 9 11 11 15 15 17 17 18 19 20 20 21 21 22 22 23 24 26 27 LCS_GDT W 37 W 37 11 12 24 4 9 10 11 12 12 12 12 13 15 17 19 21 21 21 22 23 25 26 27 LCS_GDT V 38 V 38 11 12 17 4 8 10 11 12 12 12 12 13 18 21 21 21 22 23 24 26 26 26 27 LCS_GDT Y 39 Y 39 11 12 17 3 9 10 11 12 12 12 12 13 15 17 19 21 21 22 24 26 26 26 27 LCS_GDT Q 40 Q 40 11 12 17 3 9 10 11 12 12 12 12 13 15 17 19 21 21 21 22 26 26 26 27 LCS_GDT G 41 G 41 11 12 17 3 9 10 11 12 12 14 15 16 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT K 42 K 42 11 12 17 3 9 10 11 12 14 16 17 17 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT P 43 P 43 11 12 17 3 9 10 11 12 15 16 17 17 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT V 44 V 44 11 12 17 4 9 10 11 12 15 16 17 17 19 21 21 21 22 23 24 26 26 26 27 LCS_GDT M 45 M 45 11 12 17 3 5 10 11 12 12 12 12 13 15 17 19 21 21 22 24 26 26 26 27 LCS_GDT P 46 P 46 3 12 17 3 3 3 3 4 5 5 9 13 15 17 19 21 21 21 22 23 23 26 26 LCS_AVERAGE LCS_A: 42.48 ( 28.08 36.73 62.61 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 9 13 14 15 16 18 18 18 19 21 21 21 22 23 24 26 26 26 27 GDT PERCENT_AT 17.14 25.71 37.14 40.00 42.86 45.71 51.43 51.43 51.43 54.29 60.00 60.00 60.00 62.86 65.71 68.57 74.29 74.29 74.29 77.14 GDT RMS_LOCAL 0.19 0.66 1.05 1.14 1.26 1.83 2.20 2.20 2.20 2.48 3.57 3.57 3.57 3.93 4.24 4.45 5.01 5.01 5.01 5.33 GDT RMS_ALL_AT 11.29 13.73 10.43 10.48 10.52 11.60 12.06 12.06 12.06 11.80 10.27 10.27 10.27 10.37 10.54 10.58 10.81 10.81 10.81 10.64 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 25.345 5 0.633 0.594 26.133 0.000 0.000 LGA F 13 F 13 19.350 6 0.309 0.351 21.612 0.000 0.000 LGA H 14 H 14 13.206 5 0.617 0.552 15.607 0.000 0.000 LGA Y 15 Y 15 8.194 7 0.079 0.107 10.065 8.810 3.333 LGA T 16 T 16 2.498 2 0.304 0.368 4.506 58.452 43.810 LGA V 17 V 17 2.185 2 0.015 0.014 2.604 68.810 47.483 LGA T 18 T 18 1.020 2 0.078 0.086 1.440 83.690 59.456 LGA D 19 D 19 1.443 3 0.068 0.072 1.988 79.286 48.750 LGA I 20 I 20 1.184 3 0.037 0.040 1.364 83.690 52.024 LGA K 21 K 21 1.574 4 0.026 0.031 2.282 72.976 39.630 LGA D 22 D 22 2.777 3 0.092 0.100 3.433 60.952 36.726 LGA L 23 L 23 1.964 3 0.020 0.020 2.054 72.976 44.583 LGA T 24 T 24 0.851 2 0.018 0.020 1.181 90.476 63.333 LGA K 25 K 25 1.495 4 0.092 0.095 2.123 81.429 43.386 LGA L 26 L 26 1.500 3 0.094 0.099 2.105 79.286 47.738 LGA G 27 G 27 1.060 0 0.186 0.186 2.616 75.476 75.476 LGA A 28 A 28 2.067 0 0.138 0.175 2.704 79.524 75.048 LGA I 29 I 29 2.422 3 0.673 0.613 4.003 55.952 33.393 LGA Y 30 Y 30 3.155 7 0.023 0.029 6.004 50.833 18.373 LGA D 31 D 31 3.305 3 0.173 0.181 4.363 50.833 30.833 LGA K 32 K 32 8.312 4 0.125 0.129 10.765 6.905 3.069 LGA T 33 T 33 9.878 2 0.036 0.039 11.721 4.048 2.313 LGA K 34 K 34 3.428 4 0.676 0.611 5.451 49.762 25.608 LGA K 35 K 35 2.847 4 0.655 0.592 4.001 59.643 30.635 LGA Y 36 Y 36 5.947 7 0.040 0.042 7.473 19.643 7.381 LGA W 37 W 37 10.839 9 0.023 0.027 12.574 0.714 0.204 LGA V 38 V 38 15.093 2 0.052 0.069 17.515 0.000 0.000 LGA Y 39 Y 39 21.217 7 0.029 0.033 23.431 0.000 0.000 LGA Q 40 Q 40 26.455 4 0.018 0.019 28.338 0.000 0.000 LGA G 41 G 41 22.827 0 0.025 0.025 23.652 0.000 0.000 LGA K 42 K 42 21.889 4 0.072 0.092 23.925 0.000 0.000 LGA P 43 P 43 16.640 2 0.038 0.067 18.801 0.000 0.000 LGA V 44 V 44 15.371 2 0.627 0.581 15.371 0.000 0.000 LGA M 45 M 45 15.286 3 0.634 0.572 16.056 0.000 0.000 LGA P 46 P 46 17.363 2 0.107 0.127 19.114 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 173 58.45 35 SUMMARY(RMSD_GDC): 9.595 9.515 9.682 36.976 23.788 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 18 2.20 46.429 45.487 0.784 LGA_LOCAL RMSD: 2.196 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.060 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 9.595 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.588813 * X + 0.796823 * Y + 0.135544 * Z + -40.561668 Y_new = 0.808265 * X + 0.579910 * Y + 0.102044 * Z + -8.722648 Z_new = 0.002708 * X + 0.169640 * Y + -0.985502 * Z + 33.949471 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.200388 -0.002708 2.971128 [DEG: 126.0730 -0.1552 170.2331 ] ZXZ: 2.216121 2.971106 0.015964 [DEG: 126.9744 170.2318 0.9147 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS257_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS257_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 18 2.20 45.487 9.59 REMARK ---------------------------------------------------------- MOLECULE T0548TS257_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 77 N HIS 12 -38.774 -8.076 47.285 1.00 0.00 N ATOM 78 CA HIS 12 -39.578 -7.285 46.359 1.00 0.00 C ATOM 79 C HIS 12 -39.843 -8.050 45.070 1.00 0.00 C ATOM 80 O HIS 12 -40.879 -7.867 44.431 1.00 0.00 O ATOM 81 CB HIS 12 -38.888 -5.953 46.046 1.00 0.00 C ATOM 82 CEN HIS 12 -38.924 -4.604 46.504 1.00 0.00 C ATOM 83 H HIS 12 -37.813 -8.280 47.051 1.00 0.00 H ATOM 84 N PHE 13 -38.900 -8.907 44.691 1.00 0.00 N ATOM 85 CA PHE 13 -38.973 -9.612 43.416 1.00 0.00 C ATOM 86 C PHE 13 -38.465 -11.042 43.548 1.00 0.00 C ATOM 87 O PHE 13 -37.362 -11.362 43.106 1.00 0.00 O ATOM 88 CB PHE 13 -38.174 -8.866 42.347 1.00 0.00 C ATOM 89 CEN PHE 13 -38.442 -7.846 41.158 1.00 0.00 C ATOM 90 H PHE 13 -38.114 -9.075 45.302 1.00 0.00 H ATOM 91 N HIS 14 -39.277 -11.899 44.160 1.00 0.00 N ATOM 92 CA HIS 14 -38.907 -13.295 44.358 1.00 0.00 C ATOM 93 C HIS 14 -39.049 -14.091 43.067 1.00 0.00 C ATOM 94 O HIS 14 -38.522 -15.197 42.948 1.00 0.00 O ATOM 95 CB HIS 14 -39.761 -13.930 45.461 1.00 0.00 C ATOM 96 CEN HIS 14 -39.671 -14.188 46.859 1.00 0.00 C ATOM 97 H HIS 14 -40.172 -11.574 44.495 1.00 0.00 H ATOM 98 N TYR 15 -39.762 -13.521 42.101 1.00 0.00 N ATOM 99 CA TYR 15 -39.982 -14.181 40.821 1.00 0.00 C ATOM 100 C TYR 15 -38.798 -13.975 39.884 1.00 0.00 C ATOM 101 O TYR 15 -37.911 -13.168 40.159 1.00 0.00 O ATOM 102 CB TYR 15 -41.266 -13.665 40.166 1.00 0.00 C ATOM 103 CEN TYR 15 -42.943 -14.120 39.943 1.00 0.00 C ATOM 104 H TYR 15 -40.164 -12.608 42.259 1.00 0.00 H ATOM 105 N THR 16 -38.792 -14.707 38.776 1.00 0.00 N ATOM 106 CA THR 16 -37.803 -14.498 37.725 1.00 0.00 C ATOM 107 C THR 16 -38.197 -13.335 36.823 1.00 0.00 C ATOM 108 O THR 16 -39.008 -13.490 35.910 1.00 0.00 O ATOM 109 CB THR 16 -37.618 -15.761 36.863 1.00 0.00 C ATOM 110 CEN THR 16 -37.479 -16.325 36.802 1.00 0.00 C ATOM 111 H THR 16 -39.490 -15.429 38.659 1.00 0.00 H ATOM 112 N VAL 17 -37.617 -12.168 37.085 1.00 0.00 N ATOM 113 CA VAL 17 -37.909 -10.975 36.300 1.00 0.00 C ATOM 114 C VAL 17 -37.382 -11.109 34.877 1.00 0.00 C ATOM 115 O VAL 17 -38.099 -10.844 33.912 1.00 0.00 O ATOM 116 CB VAL 17 -37.303 -9.713 36.944 1.00 0.00 C ATOM 117 CEN VAL 17 -37.461 -9.131 37.278 1.00 0.00 C ATOM 118 H VAL 17 -36.959 -12.107 37.848 1.00 0.00 H ATOM 119 N THR 18 -36.126 -11.522 34.754 1.00 0.00 N ATOM 120 CA THR 18 -35.501 -11.696 33.448 1.00 0.00 C ATOM 121 C THR 18 -36.118 -12.868 32.695 1.00 0.00 C ATOM 122 O THR 18 -36.229 -12.840 31.469 1.00 0.00 O ATOM 123 CB THR 18 -33.982 -11.922 33.572 1.00 0.00 C ATOM 124 CEN THR 18 -33.450 -11.751 33.740 1.00 0.00 C ATOM 125 H THR 18 -35.588 -11.721 35.586 1.00 0.00 H ATOM 126 N ASP 19 -36.519 -13.896 33.434 1.00 0.00 N ATOM 127 CA ASP 19 -37.162 -15.062 32.841 1.00 0.00 C ATOM 128 C ASP 19 -38.617 -14.774 32.498 1.00 0.00 C ATOM 129 O ASP 19 -39.123 -15.223 31.470 1.00 0.00 O ATOM 130 CB ASP 19 -37.071 -16.263 33.787 1.00 0.00 C ATOM 131 CEN ASP 19 -36.509 -17.097 33.944 1.00 0.00 C ATOM 132 H ASP 19 -36.374 -13.868 34.434 1.00 0.00 H ATOM 133 N ILE 20 -39.287 -14.024 33.367 1.00 0.00 N ATOM 134 CA ILE 20 -40.650 -13.578 33.103 1.00 0.00 C ATOM 135 C ILE 20 -40.706 -12.671 31.881 1.00 0.00 C ATOM 136 O ILE 20 -41.681 -12.685 31.130 1.00 0.00 O ATOM 137 CB ILE 20 -41.245 -12.835 34.311 1.00 0.00 C ATOM 138 CEN ILE 20 -41.771 -12.949 35.260 1.00 0.00 C ATOM 139 H ILE 20 -38.840 -13.754 34.232 1.00 0.00 H ATOM 140 N LYS 21 -39.655 -11.881 31.687 1.00 0.00 N ATOM 141 CA LYS 21 -39.572 -10.982 30.544 1.00 0.00 C ATOM 142 C LYS 21 -39.821 -11.727 29.238 1.00 0.00 C ATOM 143 O LYS 21 -40.513 -11.228 28.350 1.00 0.00 O ATOM 144 CB LYS 21 -38.209 -10.290 30.502 1.00 0.00 C ATOM 145 CEN LYS 21 -37.051 -8.551 30.832 1.00 0.00 C ATOM 146 H LYS 21 -38.893 -11.905 32.351 1.00 0.00 H ATOM 147 N ASP 22 -39.253 -12.922 29.127 1.00 0.00 N ATOM 148 CA ASP 22 -39.376 -13.721 27.914 1.00 0.00 C ATOM 149 C ASP 22 -40.835 -13.866 27.497 1.00 0.00 C ATOM 150 O ASP 22 -41.188 -13.614 26.345 1.00 0.00 O ATOM 151 CB ASP 22 -38.746 -15.101 28.112 1.00 0.00 C ATOM 152 CEN ASP 22 -37.878 -15.601 27.925 1.00 0.00 C ATOM 153 H ASP 22 -38.722 -13.289 29.904 1.00 0.00 H ATOM 154 N LEU 23 -41.676 -14.276 28.440 1.00 0.00 N ATOM 155 CA LEU 23 -43.095 -14.473 28.168 1.00 0.00 C ATOM 156 C LEU 23 -43.802 -13.143 27.939 1.00 0.00 C ATOM 157 O LEU 23 -44.590 -13.000 27.004 1.00 0.00 O ATOM 158 CB LEU 23 -43.755 -15.236 29.322 1.00 0.00 C ATOM 159 CEN LEU 23 -44.219 -16.697 29.479 1.00 0.00 C ATOM 160 H LEU 23 -41.323 -14.455 29.369 1.00 0.00 H ATOM 161 N THR 24 -43.515 -12.171 28.800 1.00 0.00 N ATOM 162 CA THR 24 -44.099 -10.841 28.673 1.00 0.00 C ATOM 163 C THR 24 -43.517 -10.094 27.480 1.00 0.00 C ATOM 164 O THR 24 -44.239 -9.423 26.744 1.00 0.00 O ATOM 165 CB THR 24 -43.875 -10.003 29.947 1.00 0.00 C ATOM 166 CEN THR 24 -43.939 -9.914 30.520 1.00 0.00 C ATOM 167 H THR 24 -42.878 -12.359 29.560 1.00 0.00 H ATOM 168 N LYS 25 -42.208 -10.218 27.292 1.00 0.00 N ATOM 169 CA LYS 25 -41.532 -9.589 26.163 1.00 0.00 C ATOM 170 C LYS 25 -42.029 -10.157 24.839 1.00 0.00 C ATOM 171 O LYS 25 -42.214 -9.423 23.868 1.00 0.00 O ATOM 172 CB LYS 25 -40.018 -9.768 26.276 1.00 0.00 C ATOM 173 CEN LYS 25 -38.127 -8.936 26.732 1.00 0.00 C ATOM 174 H LYS 25 -41.666 -10.760 27.950 1.00 0.00 H ATOM 175 N LEU 26 -42.245 -11.467 24.808 1.00 0.00 N ATOM 176 CA LEU 26 -42.670 -12.145 23.588 1.00 0.00 C ATOM 177 C LEU 26 -44.037 -11.651 23.132 1.00 0.00 C ATOM 178 O LEU 26 -44.278 -11.479 21.936 1.00 0.00 O ATOM 179 CB LEU 26 -42.696 -13.662 23.806 1.00 0.00 C ATOM 180 CEN LEU 26 -41.753 -14.798 23.367 1.00 0.00 C ATOM 181 H LEU 26 -42.110 -12.009 25.649 1.00 0.00 H ATOM 182 N GLY 27 -44.929 -11.424 24.090 1.00 0.00 N ATOM 183 CA GLY 27 -46.262 -10.916 23.791 1.00 0.00 C ATOM 184 C GLY 27 -47.318 -11.999 23.971 1.00 0.00 C ATOM 185 O GLY 27 -48.507 -11.705 24.092 1.00 0.00 O ATOM 186 CEN GLY 27 -46.262 -10.915 23.791 1.00 0.00 C ATOM 187 H GLY 27 -44.677 -11.610 25.050 1.00 0.00 H ATOM 188 N ALA 28 -46.876 -13.252 23.988 1.00 0.00 N ATOM 189 CA ALA 28 -47.775 -14.378 24.210 1.00 0.00 C ATOM 190 C ALA 28 -48.214 -14.454 25.667 1.00 0.00 C ATOM 191 O ALA 28 -47.383 -14.493 26.574 1.00 0.00 O ATOM 192 CB ALA 28 -47.110 -15.679 23.786 1.00 0.00 C ATOM 193 CEN ALA 28 -47.110 -15.679 23.787 1.00 0.00 C ATOM 194 H ALA 28 -45.892 -13.428 23.843 1.00 0.00 H ATOM 195 N ILE 29 -49.524 -14.473 25.885 1.00 0.00 N ATOM 196 CA ILE 29 -50.077 -14.554 27.231 1.00 0.00 C ATOM 197 C ILE 29 -50.335 -16.000 27.635 1.00 0.00 C ATOM 198 O ILE 29 -50.504 -16.305 28.816 1.00 0.00 O ATOM 199 CB ILE 29 -51.387 -13.756 27.355 1.00 0.00 C ATOM 200 CEN ILE 29 -51.818 -12.773 27.546 1.00 0.00 C ATOM 201 H ILE 29 -50.155 -14.429 25.097 1.00 0.00 H ATOM 202 N TYR 30 -50.363 -16.889 26.647 1.00 0.00 N ATOM 203 CA TYR 30 -50.601 -18.305 26.897 1.00 0.00 C ATOM 204 C TYR 30 -49.293 -19.084 26.947 1.00 0.00 C ATOM 205 O TYR 30 -48.527 -19.092 25.983 1.00 0.00 O ATOM 206 CB TYR 30 -51.520 -18.891 25.822 1.00 0.00 C ATOM 207 CEN TYR 30 -53.199 -19.325 25.573 1.00 0.00 C ATOM 208 H TYR 30 -50.215 -16.575 25.698 1.00 0.00 H ATOM 209 N ASP 31 -49.044 -19.738 28.076 1.00 0.00 N ATOM 210 CA ASP 31 -47.863 -20.581 28.228 1.00 0.00 C ATOM 211 C ASP 31 -48.093 -21.964 27.633 1.00 0.00 C ATOM 212 O ASP 31 -48.142 -22.960 28.355 1.00 0.00 O ATOM 213 CB ASP 31 -47.476 -20.701 29.703 1.00 0.00 C ATOM 214 CEN ASP 31 -46.833 -20.294 30.382 1.00 0.00 C ATOM 215 H ASP 31 -49.687 -19.649 28.849 1.00 0.00 H ATOM 216 N LYS 32 -48.234 -22.019 26.313 1.00 0.00 N ATOM 217 CA LYS 32 -48.653 -23.241 25.637 1.00 0.00 C ATOM 218 C LYS 32 -47.803 -24.428 26.068 1.00 0.00 C ATOM 219 O LYS 32 -48.275 -25.564 26.098 1.00 0.00 O ATOM 220 CB LYS 32 -48.581 -23.065 24.119 1.00 0.00 C ATOM 221 CEN LYS 32 -49.586 -22.756 22.283 1.00 0.00 C ATOM 222 H LYS 32 -48.043 -21.193 25.763 1.00 0.00 H ATOM 223 N THR 33 -46.545 -24.160 26.401 1.00 0.00 N ATOM 224 CA THR 33 -45.607 -25.214 26.767 1.00 0.00 C ATOM 225 C THR 33 -46.027 -25.902 28.058 1.00 0.00 C ATOM 226 O THR 33 -45.812 -27.101 28.234 1.00 0.00 O ATOM 227 CB THR 33 -44.177 -24.666 26.932 1.00 0.00 C ATOM 228 CEN THR 33 -43.702 -24.397 26.723 1.00 0.00 C ATOM 229 H THR 33 -46.230 -23.200 26.400 1.00 0.00 H ATOM 230 N LYS 34 -46.630 -25.136 28.962 1.00 0.00 N ATOM 231 CA LYS 34 -47.091 -25.673 30.236 1.00 0.00 C ATOM 232 C LYS 34 -48.303 -24.907 30.750 1.00 0.00 C ATOM 233 O LYS 34 -48.422 -23.701 30.539 1.00 0.00 O ATOM 234 CB LYS 34 -45.966 -25.634 31.272 1.00 0.00 C ATOM 235 CEN LYS 34 -44.489 -26.669 32.378 1.00 0.00 C ATOM 236 H LYS 34 -46.773 -24.157 28.759 1.00 0.00 H ATOM 237 N LYS 35 -49.201 -25.616 31.427 1.00 0.00 N ATOM 238 CA LYS 35 -50.416 -25.007 31.957 1.00 0.00 C ATOM 239 C LYS 35 -50.092 -23.787 32.811 1.00 0.00 C ATOM 240 O LYS 35 -49.170 -23.814 33.627 1.00 0.00 O ATOM 241 CB LYS 35 -51.212 -26.025 32.775 1.00 0.00 C ATOM 242 CEN LYS 35 -52.864 -27.337 32.916 1.00 0.00 C ATOM 243 H LYS 35 -49.038 -26.600 31.578 1.00 0.00 H ATOM 244 N TYR 36 -50.857 -22.717 32.619 1.00 0.00 N ATOM 245 CA TYR 36 -50.653 -21.485 33.369 1.00 0.00 C ATOM 246 C TYR 36 -51.869 -21.150 34.222 1.00 0.00 C ATOM 247 O TYR 36 -52.989 -21.557 33.909 1.00 0.00 O ATOM 248 CB TYR 36 -50.342 -20.325 32.420 1.00 0.00 C ATOM 249 CEN TYR 36 -48.978 -19.407 31.813 1.00 0.00 C ATOM 250 H TYR 36 -51.598 -22.759 31.935 1.00 0.00 H ATOM 251 N TRP 37 -51.645 -20.407 35.299 1.00 0.00 N ATOM 252 CA TRP 37 -52.721 -20.035 36.212 1.00 0.00 C ATOM 253 C TRP 37 -53.223 -18.626 35.924 1.00 0.00 C ATOM 254 O TRP 37 -52.454 -17.750 35.529 1.00 0.00 O ATOM 255 CB TRP 37 -52.248 -20.137 37.664 1.00 0.00 C ATOM 256 CEN TRP 37 -52.554 -20.993 39.162 1.00 0.00 C ATOM 257 H TRP 37 -50.706 -20.092 35.493 1.00 0.00 H ATOM 258 N VAL 38 -54.519 -18.414 36.125 1.00 0.00 N ATOM 259 CA VAL 38 -55.108 -17.085 35.996 1.00 0.00 C ATOM 260 C VAL 38 -55.812 -16.667 37.280 1.00 0.00 C ATOM 261 O VAL 38 -56.640 -17.405 37.814 1.00 0.00 O ATOM 262 CB VAL 38 -56.111 -17.023 34.829 1.00 0.00 C ATOM 263 CEN VAL 38 -56.210 -16.769 34.196 1.00 0.00 C ATOM 264 H VAL 38 -55.113 -19.193 36.374 1.00 0.00 H ATOM 265 N TYR 39 -55.477 -15.480 37.773 1.00 0.00 N ATOM 266 CA TYR 39 -56.078 -14.960 38.995 1.00 0.00 C ATOM 267 C TYR 39 -57.260 -14.051 38.685 1.00 0.00 C ATOM 268 O TYR 39 -57.152 -13.130 37.876 1.00 0.00 O ATOM 269 CB TYR 39 -55.037 -14.204 39.823 1.00 0.00 C ATOM 270 CEN TYR 39 -53.995 -14.430 41.212 1.00 0.00 C ATOM 271 H TYR 39 -54.790 -14.922 37.287 1.00 0.00 H ATOM 272 N GLN 40 -58.389 -14.316 39.332 1.00 0.00 N ATOM 273 CA GLN 40 -59.590 -13.511 39.140 1.00 0.00 C ATOM 274 C GLN 40 -59.957 -13.414 37.665 1.00 0.00 C ATOM 275 O GLN 40 -60.296 -12.340 37.169 1.00 0.00 O ATOM 276 CB GLN 40 -59.392 -12.106 39.717 1.00 0.00 C ATOM 277 CEN GLN 40 -59.730 -11.071 41.081 1.00 0.00 C ATOM 278 H GLN 40 -58.418 -15.095 39.975 1.00 0.00 H ATOM 279 N GLY 41 -59.888 -14.543 36.968 1.00 0.00 N ATOM 280 CA GLY 41 -60.235 -14.591 35.552 1.00 0.00 C ATOM 281 C GLY 41 -59.167 -13.918 34.700 1.00 0.00 C ATOM 282 O GLY 41 -59.355 -13.713 33.500 1.00 0.00 O ATOM 283 CEN GLY 41 -60.235 -14.591 35.552 1.00 0.00 C ATOM 284 H GLY 41 -59.589 -15.390 37.431 1.00 0.00 H ATOM 285 N LYS 42 -58.047 -13.575 35.327 1.00 0.00 N ATOM 286 CA LYS 42 -56.945 -12.926 34.626 1.00 0.00 C ATOM 287 C LYS 42 -55.762 -13.873 34.466 1.00 0.00 C ATOM 288 O LYS 42 -55.375 -14.564 35.408 1.00 0.00 O ATOM 289 CB LYS 42 -56.509 -11.661 35.367 1.00 0.00 C ATOM 290 CEN LYS 42 -56.506 -9.549 35.493 1.00 0.00 C ATOM 291 H LYS 42 -57.957 -13.767 36.314 1.00 0.00 H ATOM 292 N PRO 43 -55.190 -13.899 33.267 1.00 0.00 N ATOM 293 CA PRO 43 -54.032 -14.739 32.989 1.00 0.00 C ATOM 294 C PRO 43 -52.824 -14.301 33.809 1.00 0.00 C ATOM 295 O PRO 43 -52.641 -13.114 34.077 1.00 0.00 O ATOM 296 CB PRO 43 -53.797 -14.568 31.478 1.00 0.00 C ATOM 297 CEN PRO 43 -55.169 -13.432 31.588 1.00 0.00 C ATOM 298 N VAL 44 -52.004 -15.267 34.205 1.00 0.00 N ATOM 299 CA VAL 44 -50.822 -14.986 35.012 1.00 0.00 C ATOM 300 C VAL 44 -49.754 -14.270 34.194 1.00 0.00 C ATOM 301 O VAL 44 -48.998 -13.454 34.720 1.00 0.00 O ATOM 302 CB VAL 44 -50.221 -16.274 35.606 1.00 0.00 C ATOM 303 CEN VAL 44 -50.133 -16.625 36.191 1.00 0.00 C ATOM 304 H VAL 44 -52.203 -16.222 33.941 1.00 0.00 H ATOM 305 N MET 45 -49.698 -14.581 32.903 1.00 0.00 N ATOM 306 CA MET 45 -48.702 -13.991 32.015 1.00 0.00 C ATOM 307 C MET 45 -48.848 -12.476 31.954 1.00 0.00 C ATOM 308 O MET 45 -47.882 -11.761 31.686 1.00 0.00 O ATOM 309 CB MET 45 -48.823 -14.590 30.616 1.00 0.00 C ATOM 310 CEN MET 45 -48.012 -15.655 29.481 1.00 0.00 C ATOM 311 H MET 45 -50.362 -15.242 32.527 1.00 0.00 H ATOM 312 N PRO 46 -50.060 -11.993 32.205 1.00 0.00 N ATOM 313 CA PRO 46 -50.338 -10.562 32.162 1.00 0.00 C ATOM 314 C PRO 46 -49.399 -9.791 33.081 1.00 0.00 C ATOM 315 O PRO 46 -49.117 -10.222 34.199 1.00 0.00 O ATOM 316 CB PRO 46 -51.805 -10.451 32.608 1.00 0.00 C ATOM 317 CEN PRO 46 -51.681 -12.220 32.803 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 173 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 57.41 75.0 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 32.65 91.2 34 100.0 34 ARMSMC SURFACE . . . . . . . . 59.02 73.2 56 100.0 56 ARMSMC BURIED . . . . . . . . 49.21 83.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 29 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 21 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.59 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.59 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2741 CRMSCA SECONDARY STRUCTURE . . 6.05 17 100.0 17 CRMSCA SURFACE . . . . . . . . 10.29 29 100.0 29 CRMSCA BURIED . . . . . . . . 5.00 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.69 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 6.38 85 100.0 85 CRMSMC SURFACE . . . . . . . . 10.38 143 100.0 143 CRMSMC BURIED . . . . . . . . 5.20 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.36 33 21.2 156 CRMSSC RELIABLE SIDE CHAINS . 10.36 33 24.3 136 CRMSSC SECONDARY STRUCTURE . . 6.42 17 20.2 84 CRMSSC SURFACE . . . . . . . . 11.19 27 21.3 127 CRMSSC BURIED . . . . . . . . 5.15 6 20.7 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.69 173 58.4 296 CRMSALL SECONDARY STRUCTURE . . 6.38 85 55.9 152 CRMSALL SURFACE . . . . . . . . 10.38 143 58.8 243 CRMSALL BURIED . . . . . . . . 5.20 30 56.6 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.790 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 4.866 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 8.487 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 4.420 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.855 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 5.063 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 8.555 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 4.519 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.367 1.000 0.500 33 21.2 156 ERRSC RELIABLE SIDE CHAINS . 8.367 1.000 0.500 33 24.3 136 ERRSC SECONDARY STRUCTURE . . 5.155 1.000 0.500 17 20.2 84 ERRSC SURFACE . . . . . . . . 9.185 1.000 0.500 27 21.3 127 ERRSC BURIED . . . . . . . . 4.685 1.000 0.500 6 20.7 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.855 1.000 0.500 173 58.4 296 ERRALL SECONDARY STRUCTURE . . 5.063 1.000 0.500 85 55.9 152 ERRALL SURFACE . . . . . . . . 8.555 1.000 0.500 143 58.8 243 ERRALL BURIED . . . . . . . . 4.519 1.000 0.500 30 56.6 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 2 9 16 23 35 35 DISTCA CA (P) 2.86 5.71 25.71 45.71 65.71 35 DISTCA CA (RMS) 0.48 0.87 2.31 3.03 4.94 DISTCA ALL (N) 4 13 45 78 109 173 296 DISTALL ALL (P) 1.35 4.39 15.20 26.35 36.82 296 DISTALL ALL (RMS) 0.72 1.32 2.25 2.97 4.69 DISTALL END of the results output