####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS253_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS253_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 4.99 4.99 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 33 - 46 1.77 7.60 LCS_AVERAGE: 26.61 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 36 - 44 0.94 8.28 LCS_AVERAGE: 16.41 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 3 35 0 3 3 3 4 4 5 10 13 15 16 18 24 32 34 35 35 35 35 35 LCS_GDT F 13 F 13 3 3 35 0 3 3 3 4 4 5 12 16 19 23 28 30 33 34 35 35 35 35 35 LCS_GDT H 14 H 14 3 3 35 0 3 3 3 4 5 7 12 16 19 25 28 30 33 34 35 35 35 35 35 LCS_GDT Y 15 Y 15 3 5 35 0 3 3 4 5 7 9 18 21 23 25 28 30 33 34 35 35 35 35 35 LCS_GDT T 16 T 16 3 5 35 3 3 3 3 5 5 6 8 13 19 23 27 30 33 34 35 35 35 35 35 LCS_GDT V 17 V 17 3 5 35 3 3 3 6 9 9 10 18 21 23 25 28 30 33 34 35 35 35 35 35 LCS_GDT T 18 T 18 3 5 35 3 3 3 4 5 5 7 10 13 23 24 27 29 33 34 35 35 35 35 35 LCS_GDT D 19 D 19 3 5 35 3 3 3 4 5 9 15 18 21 23 25 28 30 33 34 35 35 35 35 35 LCS_GDT I 20 I 20 3 4 35 1 3 3 4 5 10 15 18 21 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT K 21 K 21 3 5 35 3 4 7 8 10 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT D 22 D 22 3 5 35 3 3 6 8 8 12 19 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT L 23 L 23 3 5 35 3 4 4 4 5 5 7 8 9 18 27 27 30 33 34 35 35 35 35 35 LCS_GDT T 24 T 24 3 5 35 3 4 4 4 5 9 9 18 21 24 27 27 30 33 34 35 35 35 35 35 LCS_GDT K 25 K 25 3 9 35 3 4 4 7 8 11 17 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT L 26 L 26 3 9 35 4 4 7 11 13 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT G 27 G 27 7 9 35 4 6 7 8 11 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT A 28 A 28 7 9 35 4 6 7 8 11 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT I 29 I 29 7 9 35 4 6 7 8 11 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT Y 30 Y 30 7 9 35 4 6 7 8 11 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT D 31 D 31 7 9 35 3 6 7 8 11 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT K 32 K 32 7 9 35 1 6 7 8 11 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT T 33 T 33 7 14 35 3 6 7 8 11 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT K 34 K 34 7 14 35 4 7 10 13 13 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT K 35 K 35 7 14 35 3 7 10 13 13 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT Y 36 Y 36 9 14 35 5 7 10 13 13 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT W 37 W 37 9 14 35 5 7 10 13 13 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT V 38 V 38 9 14 35 5 7 10 13 13 15 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT Y 39 Y 39 9 14 35 5 7 10 13 13 14 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT Q 40 Q 40 9 14 35 5 7 10 13 13 14 20 23 24 25 27 27 29 32 34 35 35 35 35 35 LCS_GDT G 41 G 41 9 14 35 4 6 9 13 13 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT K 42 K 42 9 14 35 4 7 10 13 13 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT P 43 P 43 9 14 35 4 7 10 13 13 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT V 44 V 44 9 14 35 4 7 10 13 13 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT M 45 M 45 6 14 35 3 6 8 13 13 15 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_GDT P 46 P 46 6 14 35 3 6 8 13 13 14 21 23 24 25 27 28 30 33 34 35 35 35 35 35 LCS_AVERAGE LCS_A: 47.67 ( 16.41 26.61 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 7 10 13 13 17 21 23 24 25 27 28 30 33 34 35 35 35 35 35 GDT PERCENT_AT 14.29 20.00 28.57 37.14 37.14 48.57 60.00 65.71 68.57 71.43 77.14 80.00 85.71 94.29 97.14 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.40 0.52 0.96 1.36 1.36 2.52 2.73 2.88 2.98 3.17 3.49 4.08 4.41 4.78 4.85 4.99 4.99 4.99 4.99 4.99 GDT RMS_ALL_AT 8.51 8.14 7.46 7.81 7.81 5.90 5.93 6.13 6.10 5.91 6.10 5.08 5.01 5.01 5.00 4.99 4.99 4.99 4.99 4.99 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 15 Y 15 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 12.533 0 0.052 1.215 13.522 0.000 0.000 LGA F 13 F 13 11.741 0 0.635 1.308 14.742 0.000 0.000 LGA H 14 H 14 11.678 0 0.625 1.048 12.723 0.000 0.190 LGA Y 15 Y 15 8.812 0 0.643 0.780 11.097 1.190 5.794 LGA T 16 T 16 10.949 0 0.604 0.616 12.229 0.357 0.204 LGA V 17 V 17 10.367 0 0.181 0.225 10.828 0.000 0.204 LGA T 18 T 18 11.891 0 0.421 1.141 16.172 0.000 0.000 LGA D 19 D 19 8.955 0 0.551 0.659 13.081 8.690 4.524 LGA I 20 I 20 6.586 0 0.605 0.563 13.250 22.976 12.024 LGA K 21 K 21 3.039 0 0.558 1.420 10.327 46.667 27.725 LGA D 22 D 22 3.950 0 0.152 0.350 5.753 35.238 41.845 LGA L 23 L 23 7.095 0 0.152 1.266 12.012 14.524 7.440 LGA T 24 T 24 6.887 0 0.601 0.993 8.258 18.571 14.150 LGA K 25 K 25 5.062 0 0.653 1.043 12.899 35.476 17.196 LGA L 26 L 26 2.671 0 0.222 1.392 8.176 61.190 37.024 LGA G 27 G 27 3.064 0 0.310 0.310 3.170 51.786 51.786 LGA A 28 A 28 3.668 0 0.084 0.111 4.265 48.452 46.190 LGA I 29 I 29 2.974 0 0.107 1.153 5.832 50.119 48.333 LGA Y 30 Y 30 3.353 0 0.053 1.271 14.211 51.786 22.460 LGA D 31 D 31 2.554 0 0.306 1.025 6.117 53.690 41.190 LGA K 32 K 32 3.050 0 0.555 0.847 9.151 52.024 34.180 LGA T 33 T 33 3.339 0 0.636 0.628 5.536 50.119 44.150 LGA K 34 K 34 2.949 0 0.284 1.087 7.139 59.048 42.593 LGA K 35 K 35 2.446 0 0.265 0.308 3.538 55.595 59.841 LGA Y 36 Y 36 2.506 0 0.129 1.359 8.068 62.857 42.262 LGA W 37 W 37 2.353 0 0.197 0.308 5.501 70.952 47.823 LGA V 38 V 38 2.856 0 0.071 0.121 3.398 53.571 52.041 LGA Y 39 Y 39 3.184 0 0.089 1.337 9.548 50.119 33.016 LGA Q 40 Q 40 3.811 0 0.253 1.254 10.012 48.452 28.201 LGA G 41 G 41 1.534 0 0.422 0.422 1.534 79.286 79.286 LGA K 42 K 42 1.215 0 0.154 0.584 4.106 81.429 67.831 LGA P 43 P 43 1.535 0 0.056 0.315 1.965 72.857 72.857 LGA V 44 V 44 1.979 0 0.179 1.059 3.702 68.810 65.170 LGA M 45 M 45 2.789 0 0.080 0.722 7.053 57.262 42.917 LGA P 46 P 46 3.410 0 0.021 0.150 3.718 46.667 48.163 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 4.989 4.919 6.279 40.279 32.532 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 23 2.88 55.714 49.197 0.772 LGA_LOCAL RMSD: 2.879 Number of atoms: 23 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.130 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 4.989 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.522255 * X + 0.408690 * Y + 0.748480 * Z + -36.026409 Y_new = 0.003961 * X + 0.878837 * Y + -0.477105 * Z + -3.290646 Z_new = -0.852780 * X + -0.246206 * Y + -0.460596 * Z + 27.961103 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.134009 1.021286 -2.650698 [DEG: 179.5655 58.5154 -151.8738 ] ZXZ: 1.003307 2.049463 -1.851863 [DEG: 57.4852 117.4256 -106.1040 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS253_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS253_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 23 2.88 49.197 4.99 REMARK ---------------------------------------------------------- MOLECULE T0548TS253_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3l2q_A 3l2q_A 2awd_A 1gg4_A 1fqv_A ATOM 165 N HIS 12 -40.543 -17.551 34.853 1.00 0.50 N ATOM 166 CA HIS 12 -41.350 -16.962 35.915 1.00 0.50 C ATOM 167 C HIS 12 -42.632 -16.357 35.359 1.00 0.50 C ATOM 168 O HIS 12 -42.730 -16.070 34.166 1.00 0.50 O ATOM 169 CB HIS 12 -40.548 -15.887 36.662 1.00 0.50 C ATOM 170 CG HIS 12 -39.372 -16.438 37.405 1.00 0.50 C ATOM 171 ND1 HIS 12 -39.493 -17.122 38.596 1.00 0.50 N ATOM 172 CD2 HIS 12 -38.046 -16.401 37.114 1.00 0.50 C ATOM 173 CE1 HIS 12 -38.287 -17.485 39.006 1.00 0.50 C ATOM 174 NE2 HIS 12 -37.393 -17.061 38.127 1.00 0.50 N ATOM 182 N PHE 13 -43.616 -16.163 36.231 1.00 0.50 N ATOM 183 CA PHE 13 -44.895 -15.591 35.830 1.00 0.50 C ATOM 184 C PHE 13 -44.740 -14.134 35.413 1.00 0.50 C ATOM 185 O PHE 13 -45.711 -13.479 35.035 1.00 0.50 O ATOM 186 CB PHE 13 -45.914 -15.698 36.973 1.00 0.50 C ATOM 187 CG PHE 13 -46.356 -17.111 37.260 1.00 0.50 C ATOM 188 CD1 PHE 13 -47.614 -17.553 36.866 1.00 0.50 C ATOM 189 CD2 PHE 13 -45.512 -17.992 37.926 1.00 0.50 C ATOM 190 CE1 PHE 13 -48.026 -18.857 37.131 1.00 0.50 C ATOM 191 CE2 PHE 13 -45.914 -19.298 38.195 1.00 0.50 C ATOM 192 CZ PHE 13 -47.173 -19.729 37.796 1.00 0.50 C ATOM 202 N HIS 14 -43.512 -13.630 35.487 1.00 0.50 N ATOM 203 CA HIS 14 -43.228 -12.249 35.117 1.00 0.50 C ATOM 204 C HIS 14 -43.665 -11.961 33.687 1.00 0.50 C ATOM 205 O HIS 14 -43.997 -10.825 33.347 1.00 0.50 O ATOM 206 CB HIS 14 -41.729 -11.953 35.271 1.00 0.50 C ATOM 207 CG HIS 14 -41.283 -11.900 36.701 1.00 0.50 C ATOM 208 ND1 HIS 14 -39.956 -11.933 37.070 1.00 0.50 N ATOM 209 CD2 HIS 14 -42.001 -11.813 37.848 1.00 0.50 C ATOM 210 CE1 HIS 14 -39.877 -11.870 38.391 1.00 0.50 C ATOM 211 NE2 HIS 14 -41.103 -11.796 38.886 1.00 0.50 N ATOM 219 N TYR 15 -43.661 -12.994 32.852 1.00 0.50 N ATOM 220 CA TYR 15 -44.058 -12.853 31.456 1.00 0.50 C ATOM 221 C TYR 15 -45.553 -13.085 31.282 1.00 0.50 C ATOM 222 O TYR 15 -46.161 -12.593 30.331 1.00 0.50 O ATOM 223 CB TYR 15 -43.275 -13.837 30.576 1.00 0.50 C ATOM 224 CG TYR 15 -41.774 -13.665 30.659 1.00 0.50 C ATOM 225 CD1 TYR 15 -41.099 -12.840 29.762 1.00 0.50 C ATOM 226 CD2 TYR 15 -41.036 -14.331 31.634 1.00 0.50 C ATOM 227 CE1 TYR 15 -39.718 -12.681 29.835 1.00 0.50 C ATOM 228 CE2 TYR 15 -39.655 -14.179 31.715 1.00 0.50 C ATOM 229 CZ TYR 15 -39.006 -13.353 30.812 1.00 0.50 C ATOM 230 OH TYR 15 -37.640 -13.200 30.891 1.00 0.50 H ATOM 240 N THR 16 -46.141 -13.839 32.204 1.00 0.50 N ATOM 241 CA THR 16 -47.567 -14.139 32.154 1.00 0.50 C ATOM 242 C THR 16 -48.401 -12.908 32.482 1.00 0.50 C ATOM 243 O THR 16 -49.449 -12.677 31.880 1.00 0.50 O ATOM 244 CB THR 16 -47.930 -15.276 33.135 1.00 0.50 C ATOM 245 OG1 THR 16 -47.648 -14.842 34.471 1.00 0.50 O ATOM 246 CG2 THR 16 -47.130 -16.536 32.837 1.00 0.50 C ATOM 254 N VAL 17 -47.930 -12.119 33.443 1.00 0.50 N ATOM 255 CA VAL 17 -48.631 -10.908 33.853 1.00 0.50 C ATOM 256 C VAL 17 -48.549 -9.833 32.778 1.00 0.50 C ATOM 257 O VAL 17 -49.264 -8.833 32.831 1.00 0.50 O ATOM 258 CB VAL 17 -48.063 -10.354 35.179 1.00 0.50 C ATOM 259 CG1 VAL 17 -48.715 -9.020 35.529 1.00 0.50 C ATOM 260 CG2 VAL 17 -48.274 -11.356 36.309 1.00 0.50 C ATOM 270 N THR 18 -47.669 -10.042 31.804 1.00 0.50 N ATOM 271 CA THR 18 -47.491 -9.090 30.715 1.00 0.50 C ATOM 272 C THR 18 -46.239 -8.246 30.921 1.00 0.50 C ATOM 273 O THR 18 -46.235 -7.047 30.641 1.00 0.50 O ATOM 274 CB THR 18 -48.717 -8.160 30.582 1.00 0.50 C ATOM 275 OG1 THR 18 -48.883 -7.438 31.810 1.00 0.50 O ATOM 276 CG2 THR 18 -49.982 -8.955 30.293 1.00 0.50 C ATOM 284 N ASP 19 -45.179 -8.878 31.413 1.00 0.50 N ATOM 285 CA ASP 19 -43.920 -8.186 31.657 1.00 0.50 C ATOM 286 C ASP 19 -42.964 -8.348 30.482 1.00 0.50 C ATOM 287 O ASP 19 -43.172 -9.196 29.614 1.00 0.50 O ATOM 288 CB ASP 19 -43.264 -8.707 32.941 1.00 0.50 C ATOM 289 CG ASP 19 -44.177 -8.627 34.150 1.00 0.50 C ATOM 290 OD1 ASP 19 -44.604 -7.514 34.523 1.00 0.50 O ATOM 291 OD2 ASP 19 -44.468 -9.693 34.737 1.00 0.50 O ATOM 296 N ILE 20 -41.918 -7.530 30.460 1.00 0.50 N ATOM 297 CA ILE 20 -40.928 -7.581 29.390 1.00 0.50 C ATOM 298 C ILE 20 -39.783 -8.520 29.745 1.00 0.50 C ATOM 299 O ILE 20 -39.123 -8.352 30.770 1.00 0.50 O ATOM 300 CB ILE 20 -40.364 -6.174 29.084 1.00 0.50 C ATOM 301 CG1 ILE 20 -41.452 -5.286 28.471 1.00 0.50 C ATOM 302 CG2 ILE 20 -39.154 -6.268 28.153 1.00 0.50 C ATOM 303 CD1 ILE 20 -41.163 -3.796 28.580 1.00 0.50 C ATOM 315 N LYS 21 -39.552 -9.512 28.892 1.00 0.50 N ATOM 316 CA LYS 21 -38.485 -10.481 29.112 1.00 0.50 C ATOM 317 C LYS 21 -37.208 -10.069 28.392 1.00 0.50 C ATOM 318 O LYS 21 -37.191 -9.086 27.651 1.00 0.50 O ATOM 319 CB LYS 21 -38.920 -11.872 28.642 1.00 0.50 C ATOM 320 CG LYS 21 -40.274 -12.308 29.181 1.00 0.50 C ATOM 321 CD LYS 21 -40.851 -13.462 28.373 1.00 0.50 C ATOM 322 CE LYS 21 -42.360 -13.575 28.550 1.00 0.50 C ATOM 323 NZ LYS 21 -42.717 -14.197 29.857 1.00 0.50 N ATOM 337 N ASP 22 -36.138 -10.824 28.616 1.00 0.50 N ATOM 338 CA ASP 22 -34.854 -10.537 27.988 1.00 0.50 C ATOM 339 C ASP 22 -34.994 -10.414 26.476 1.00 0.50 C ATOM 340 O ASP 22 -34.738 -9.354 25.904 1.00 0.50 O ATOM 341 CB ASP 22 -33.836 -11.630 28.331 1.00 0.50 C ATOM 342 CG ASP 22 -33.410 -11.611 29.787 1.00 0.50 C ATOM 343 OD1 ASP 22 -33.076 -10.529 30.314 1.00 0.50 O ATOM 344 OD2 ASP 22 -33.407 -12.697 30.411 1.00 0.50 O ATOM 349 N LEU 23 -35.403 -11.503 25.834 1.00 0.50 N ATOM 350 CA LEU 23 -35.578 -11.518 24.386 1.00 0.50 C ATOM 351 C LEU 23 -36.964 -12.023 24.005 1.00 0.50 C ATOM 352 O LEU 23 -37.433 -11.791 22.891 1.00 0.50 O ATOM 353 CB LEU 23 -34.508 -12.399 23.731 1.00 0.50 C ATOM 354 CG LEU 23 -33.474 -11.677 22.862 1.00 0.50 C ATOM 355 CD1 LEU 23 -33.453 -10.192 23.198 1.00 0.50 C ATOM 356 CD2 LEU 23 -32.095 -12.291 23.070 1.00 0.50 C ATOM 368 N THR 24 -37.613 -12.714 24.935 1.00 0.50 N ATOM 369 CA THR 24 -38.947 -13.253 24.698 1.00 0.50 C ATOM 370 C THR 24 -39.875 -12.192 24.121 1.00 0.50 C ATOM 371 O THR 24 -40.180 -11.197 24.778 1.00 0.50 O ATOM 372 CB THR 24 -39.561 -13.813 26.000 1.00 0.50 C ATOM 373 OG1 THR 24 -38.706 -14.845 26.507 1.00 0.50 O ATOM 374 CG2 THR 24 -40.949 -14.389 25.750 1.00 0.50 C ATOM 382 N LYS 25 -40.320 -12.409 22.888 1.00 0.50 N ATOM 383 CA LYS 25 -41.215 -11.470 22.220 1.00 0.50 C ATOM 384 C LYS 25 -42.515 -11.302 22.996 1.00 0.50 C ATOM 385 O LYS 25 -43.032 -12.257 23.577 1.00 0.50 O ATOM 386 CB LYS 25 -41.519 -11.942 20.796 1.00 0.50 C ATOM 387 CG LYS 25 -40.321 -11.881 19.860 1.00 0.50 C ATOM 388 CD LYS 25 -40.694 -12.320 18.450 1.00 0.50 C ATOM 389 CE LYS 25 -39.488 -12.308 17.519 1.00 0.50 C ATOM 390 NZ LYS 25 -39.854 -12.717 16.134 1.00 0.50 N ATOM 404 N LEU 26 -43.038 -10.080 23.004 1.00 0.50 N ATOM 405 CA LEU 26 -44.280 -9.784 23.710 1.00 0.50 C ATOM 406 C LEU 26 -45.492 -10.057 22.829 1.00 0.50 C ATOM 407 O LEU 26 -46.296 -10.943 23.121 1.00 0.50 O ATOM 408 CB LEU 26 -44.294 -8.322 24.170 1.00 0.50 C ATOM 409 CG LEU 26 -43.647 -8.032 25.527 1.00 0.50 C ATOM 410 CD1 LEU 26 -43.876 -6.577 25.916 1.00 0.50 C ATOM 411 CD2 LEU 26 -44.217 -8.964 26.587 1.00 0.50 C ATOM 423 N GLY 27 -45.620 -9.290 21.753 1.00 0.50 N ATOM 424 CA GLY 27 -46.736 -9.448 20.828 1.00 0.50 C ATOM 425 C GLY 27 -47.373 -10.825 20.963 1.00 0.50 C ATOM 426 O GLY 27 -48.597 -10.955 20.970 1.00 0.50 O ATOM 430 N ALA 28 -46.536 -11.851 21.070 1.00 0.50 N ATOM 431 CA ALA 28 -47.016 -13.221 21.205 1.00 0.50 C ATOM 432 C ALA 28 -47.606 -13.463 22.588 1.00 0.50 C ATOM 433 O ALA 28 -47.055 -13.019 23.595 1.00 0.50 O ATOM 434 CB ALA 28 -45.880 -14.205 20.943 1.00 0.50 C ATOM 440 N ILE 29 -48.730 -14.170 22.631 1.00 0.50 N ATOM 441 CA ILE 29 -49.398 -14.473 23.892 1.00 0.50 C ATOM 442 C ILE 29 -48.912 -15.797 24.469 1.00 0.50 C ATOM 443 O ILE 29 -48.932 -16.825 23.792 1.00 0.50 O ATOM 444 CB ILE 29 -50.933 -14.522 23.712 1.00 0.50 C ATOM 445 CG1 ILE 29 -51.456 -13.167 23.224 1.00 0.50 C ATOM 446 CG2 ILE 29 -51.617 -14.927 25.020 1.00 0.50 C ATOM 447 CD1 ILE 29 -52.919 -13.187 22.810 1.00 0.50 C ATOM 459 N TYR 30 -48.471 -15.764 25.721 1.00 0.50 N ATOM 460 CA TYR 30 -47.978 -16.961 26.392 1.00 0.50 C ATOM 461 C TYR 30 -48.916 -17.392 27.513 1.00 0.50 C ATOM 462 O TYR 30 -49.075 -16.685 28.507 1.00 0.50 O ATOM 463 CB TYR 30 -46.573 -16.716 26.958 1.00 0.50 C ATOM 464 CG TYR 30 -45.515 -16.521 25.895 1.00 0.50 C ATOM 465 CD1 TYR 30 -44.793 -17.605 25.399 1.00 0.50 C ATOM 466 CD2 TYR 30 -45.238 -15.253 25.390 1.00 0.50 C ATOM 467 CE1 TYR 30 -43.817 -17.430 24.422 1.00 0.50 C ATOM 468 CE2 TYR 30 -44.265 -15.067 24.414 1.00 0.50 C ATOM 469 CZ TYR 30 -43.560 -16.160 23.936 1.00 0.50 C ATOM 470 OH TYR 30 -42.598 -15.978 22.969 1.00 0.50 H ATOM 480 N ASP 31 -49.537 -18.554 27.344 1.00 0.50 N ATOM 481 CA ASP 31 -50.461 -19.081 28.341 1.00 0.50 C ATOM 482 C ASP 31 -49.862 -20.278 29.069 1.00 0.50 C ATOM 483 O ASP 31 -48.736 -20.688 28.787 1.00 0.50 O ATOM 484 CB ASP 31 -51.786 -19.478 27.684 1.00 0.50 C ATOM 485 CG ASP 31 -52.420 -18.350 26.892 1.00 0.50 C ATOM 486 OD1 ASP 31 -52.740 -17.294 27.478 1.00 0.50 O ATOM 487 OD2 ASP 31 -52.604 -18.524 25.667 1.00 0.50 O ATOM 492 N LYS 32 -50.621 -20.834 30.006 1.00 0.50 N ATOM 493 CA LYS 32 -50.168 -21.986 30.777 1.00 0.50 C ATOM 494 C LYS 32 -51.019 -23.215 30.485 1.00 0.50 C ATOM 495 O LYS 32 -52.191 -23.098 30.126 1.00 0.50 O ATOM 496 CB LYS 32 -50.204 -21.674 32.276 1.00 0.50 C ATOM 497 CG LYS 32 -49.123 -22.383 33.076 1.00 0.50 C ATOM 498 CD LYS 32 -49.167 -21.985 34.547 1.00 0.50 C ATOM 499 CE LYS 32 -47.930 -22.462 35.297 1.00 0.50 C ATOM 500 NZ LYS 32 -47.874 -21.906 36.680 1.00 0.50 N ATOM 514 N THR 33 -50.423 -24.392 30.638 1.00 0.50 N ATOM 515 CA THR 33 -51.125 -25.645 30.391 1.00 0.50 C ATOM 516 C THR 33 -50.232 -26.844 30.681 1.00 0.50 C ATOM 517 O THR 33 -49.120 -26.943 30.161 1.00 0.50 O ATOM 518 CB THR 33 -51.625 -25.724 28.931 1.00 0.50 C ATOM 519 OG1 THR 33 -52.524 -24.635 28.691 1.00 0.50 O ATOM 520 CG2 THR 33 -52.348 -27.038 28.668 1.00 0.50 C ATOM 528 N LYS 34 -50.724 -27.753 31.516 1.00 0.50 N ATOM 529 CA LYS 34 -49.970 -28.948 31.877 1.00 0.50 C ATOM 530 C LYS 34 -48.606 -28.587 32.450 1.00 0.50 C ATOM 531 O LYS 34 -47.597 -29.206 32.112 1.00 0.50 O ATOM 532 CB LYS 34 -49.798 -29.859 30.659 1.00 0.50 C ATOM 533 CG LYS 34 -51.000 -30.748 30.381 1.00 0.50 C ATOM 534 CD LYS 34 -50.944 -31.337 28.978 1.00 0.50 C ATOM 535 CE LYS 34 -49.613 -32.028 28.709 1.00 0.50 C ATOM 536 NZ LYS 34 -49.329 -33.091 29.716 1.00 0.50 N ATOM 550 N LYS 35 -48.582 -27.581 33.318 1.00 0.50 N ATOM 551 CA LYS 35 -47.341 -27.135 33.940 1.00 0.50 C ATOM 552 C LYS 35 -46.284 -26.812 32.890 1.00 0.50 C ATOM 553 O LYS 35 -45.119 -27.181 33.034 1.00 0.50 O ATOM 554 CB LYS 35 -46.810 -28.203 34.899 1.00 0.50 C ATOM 555 CG LYS 35 -47.757 -28.526 36.044 1.00 0.50 C ATOM 556 CD LYS 35 -47.038 -29.250 37.174 1.00 0.50 C ATOM 557 CE LYS 35 -48.020 -29.856 38.171 1.00 0.50 C ATOM 558 NZ LYS 35 -47.358 -30.196 39.463 1.00 0.50 N ATOM 572 N TYR 36 -46.699 -26.120 31.834 1.00 0.50 N ATOM 573 CA TYR 36 -45.790 -25.747 30.758 1.00 0.50 C ATOM 574 C TYR 36 -46.175 -24.402 30.152 1.00 0.50 C ATOM 575 O TYR 36 -47.304 -24.217 29.696 1.00 0.50 O ATOM 576 CB TYR 36 -45.783 -26.824 29.664 1.00 0.50 C ATOM 577 CG TYR 36 -45.383 -28.194 30.166 1.00 0.50 C ATOM 578 CD1 TYR 36 -44.054 -28.612 30.122 1.00 0.50 C ATOM 579 CD2 TYR 36 -46.336 -29.070 30.679 1.00 0.50 C ATOM 580 CE1 TYR 36 -43.682 -29.873 30.580 1.00 0.50 C ATOM 581 CE2 TYR 36 -45.975 -30.332 31.140 1.00 0.50 C ATOM 582 CZ TYR 36 -44.648 -30.724 31.086 1.00 0.50 C ATOM 583 OH TYR 36 -44.289 -31.973 31.542 1.00 0.50 H ATOM 593 N TRP 37 -45.232 -23.466 30.154 1.00 0.50 N ATOM 594 CA TRP 37 -45.471 -22.138 29.605 1.00 0.50 C ATOM 595 C TRP 37 -45.801 -22.206 28.119 1.00 0.50 C ATOM 596 O TRP 37 -44.921 -22.433 27.289 1.00 0.50 O ATOM 597 CB TRP 37 -44.248 -21.239 29.826 1.00 0.50 C ATOM 598 CG TRP 37 -43.979 -20.921 31.268 1.00 0.50 C ATOM 599 CD1 TRP 37 -43.071 -21.532 32.089 1.00 0.50 C ATOM 600 CD2 TRP 37 -44.625 -19.915 32.056 1.00 0.50 C ATOM 601 NE1 TRP 37 -43.115 -20.966 33.341 1.00 0.50 N ATOM 602 CE2 TRP 37 -44.058 -19.973 33.348 1.00 0.50 C ATOM 603 CE3 TRP 37 -45.626 -18.972 31.792 1.00 0.50 C ATOM 604 CZ2 TRP 37 -44.462 -19.120 34.378 1.00 0.50 C ATOM 605 CZ3 TRP 37 -46.027 -18.124 32.818 1.00 0.50 C ATOM 606 CH2 TRP 37 -45.446 -18.204 34.093 1.00 0.50 H ATOM 617 N VAL 38 -47.073 -22.009 27.791 1.00 0.50 N ATOM 618 CA VAL 38 -47.521 -22.048 26.404 1.00 0.50 C ATOM 619 C VAL 38 -47.444 -20.668 25.762 1.00 0.50 C ATOM 620 O VAL 38 -48.025 -19.707 26.264 1.00 0.50 O ATOM 621 CB VAL 38 -48.966 -22.584 26.296 1.00 0.50 C ATOM 622 CG1 VAL 38 -49.482 -22.466 24.866 1.00 0.50 C ATOM 623 CG2 VAL 38 -49.030 -24.035 26.761 1.00 0.50 C ATOM 633 N TYR 39 -46.724 -20.579 24.649 1.00 0.50 N ATOM 634 CA TYR 39 -46.569 -19.317 23.936 1.00 0.50 C ATOM 635 C TYR 39 -46.923 -19.470 22.462 1.00 0.50 C ATOM 636 O TYR 39 -46.865 -20.569 21.911 1.00 0.50 O ATOM 637 CB TYR 39 -45.131 -18.798 24.072 1.00 0.50 C ATOM 638 CG TYR 39 -44.098 -19.701 23.435 1.00 0.50 C ATOM 639 CD1 TYR 39 -43.691 -19.502 22.117 1.00 0.50 C ATOM 640 CD2 TYR 39 -43.531 -20.751 24.152 1.00 0.50 C ATOM 641 CE1 TYR 39 -42.742 -20.332 21.526 1.00 0.50 C ATOM 642 CE2 TYR 39 -42.582 -21.586 23.572 1.00 0.50 C ATOM 643 CZ TYR 39 -42.195 -21.370 22.260 1.00 0.50 C ATOM 644 OH TYR 39 -41.255 -22.194 21.684 1.00 0.50 H ATOM 654 N GLN 40 -47.290 -18.361 21.828 1.00 0.50 N ATOM 655 CA GLN 40 -47.655 -18.371 20.417 1.00 0.50 C ATOM 656 C GLN 40 -46.638 -19.148 19.591 1.00 0.50 C ATOM 657 O GLN 40 -45.651 -18.588 19.116 1.00 0.50 O ATOM 658 CB GLN 40 -47.772 -16.940 19.883 1.00 0.50 C ATOM 659 CG GLN 40 -48.259 -16.865 18.441 1.00 0.50 C ATOM 660 CD GLN 40 -49.684 -17.361 18.277 1.00 0.50 C ATOM 661 OE1 GLN 40 -50.565 -17.036 19.081 1.00 0.50 O ATOM 662 NE2 GLN 40 -49.925 -18.156 17.240 1.00 0.50 N ATOM 671 N GLY 41 -46.885 -20.444 19.425 1.00 0.50 N ATOM 672 CA GLY 41 -45.992 -21.301 18.656 1.00 0.50 C ATOM 673 C GLY 41 -45.396 -22.399 19.528 1.00 0.50 C ATOM 674 O GLY 41 -45.796 -23.559 19.441 1.00 0.50 O ATOM 678 N LYS 42 -44.435 -22.026 20.366 1.00 0.50 N ATOM 679 CA LYS 42 -43.781 -22.978 21.256 1.00 0.50 C ATOM 680 C LYS 42 -44.063 -22.651 22.717 1.00 0.50 C ATOM 681 O LYS 42 -44.962 -21.868 23.025 1.00 0.50 O ATOM 682 CB LYS 42 -42.270 -22.990 21.010 1.00 0.50 C ATOM 683 CG LYS 42 -41.888 -23.148 19.546 1.00 0.50 C ATOM 684 CD LYS 42 -40.446 -22.728 19.299 1.00 0.50 C ATOM 685 CE LYS 42 -40.199 -22.395 17.832 1.00 0.50 C ATOM 686 NZ LYS 42 -40.077 -23.625 16.999 1.00 0.50 N ATOM 700 N PRO 43 -43.291 -23.256 23.613 1.00 0.50 N ATOM 701 CA PRO 43 -43.457 -23.030 25.044 1.00 0.50 C ATOM 702 C PRO 43 -42.158 -22.553 25.680 1.00 0.50 C ATOM 703 O PRO 43 -41.089 -23.110 25.425 1.00 0.50 O ATOM 704 CB PRO 43 -43.889 -24.396 25.579 1.00 0.50 C ATOM 705 CG PRO 43 -43.256 -25.372 24.630 1.00 0.50 C ATOM 706 CD PRO 43 -43.362 -24.707 23.276 1.00 0.50 C ATOM 714 N VAL 44 -42.254 -21.518 26.507 1.00 0.50 N ATOM 715 CA VAL 44 -41.087 -20.964 27.181 1.00 0.50 C ATOM 716 C VAL 44 -40.595 -21.892 28.285 1.00 0.50 C ATOM 717 O VAL 44 -41.047 -21.808 29.426 1.00 0.50 O ATOM 718 CB VAL 44 -41.392 -19.572 27.779 1.00 0.50 C ATOM 719 CG1 VAL 44 -41.612 -18.545 26.674 1.00 0.50 C ATOM 720 CG2 VAL 44 -42.616 -19.641 28.686 1.00 0.50 C ATOM 730 N MET 45 -39.668 -22.778 27.937 1.00 0.50 N ATOM 731 CA MET 45 -39.114 -23.724 28.897 1.00 0.50 C ATOM 732 C MET 45 -38.085 -23.055 29.800 1.00 0.50 C ATOM 733 O MET 45 -37.300 -22.221 29.350 1.00 0.50 O ATOM 734 CB MET 45 -38.474 -24.912 28.172 1.00 0.50 C ATOM 735 CG MET 45 -37.986 -26.006 29.111 1.00 0.50 C ATOM 736 SD MET 45 -39.337 -26.747 30.059 1.00 0.50 S ATOM 737 CE MET 45 -40.282 -27.512 28.747 1.00 0.50 C ATOM 747 N PRO 46 -38.096 -23.423 31.076 1.00 0.50 N ATOM 748 CA PRO 46 -37.165 -22.859 32.045 1.00 0.50 C ATOM 749 C PRO 46 -35.728 -22.954 31.547 1.00 0.50 C ATOM 750 O PRO 46 -35.429 -23.714 30.626 1.00 0.50 O ATOM 751 CB PRO 46 -37.393 -23.702 33.301 1.00 0.50 C ATOM 752 CG PRO 46 -38.656 -24.458 33.003 1.00 0.50 C ATOM 753 CD PRO 46 -38.681 -24.571 31.493 1.00 0.50 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 78.32 41.2 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 72.01 47.1 34 100.0 34 ARMSMC SURFACE . . . . . . . . 81.92 39.3 56 100.0 56 ARMSMC BURIED . . . . . . . . 58.68 50.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.39 40.6 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 79.35 37.9 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 86.47 35.3 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 82.02 37.0 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 54.74 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.12 48.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 54.45 57.1 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 60.29 61.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 66.12 50.0 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 100.46 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.53 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 83.09 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 85.78 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 80.53 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.51 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 84.51 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 91.63 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 84.51 50.0 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.99 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.99 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.1425 CRMSCA SECONDARY STRUCTURE . . 5.08 17 100.0 17 CRMSCA SURFACE . . . . . . . . 5.12 29 100.0 29 CRMSCA BURIED . . . . . . . . 4.28 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.14 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 5.18 85 100.0 85 CRMSMC SURFACE . . . . . . . . 5.27 143 100.0 143 CRMSMC BURIED . . . . . . . . 4.42 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.35 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 7.27 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 7.60 84 100.0 84 CRMSSC SURFACE . . . . . . . . 7.49 127 100.0 127 CRMSSC BURIED . . . . . . . . 6.69 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.32 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 6.55 152 100.0 152 CRMSALL SURFACE . . . . . . . . 6.44 243 100.0 243 CRMSALL BURIED . . . . . . . . 5.73 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.119 0.764 0.382 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 4.247 0.782 0.391 17 100.0 17 ERRCA SURFACE . . . . . . . . 4.303 0.784 0.392 29 100.0 29 ERRCA BURIED . . . . . . . . 3.231 0.665 0.332 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.218 0.765 0.383 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 4.311 0.780 0.390 85 100.0 85 ERRMC SURFACE . . . . . . . . 4.409 0.783 0.392 143 100.0 143 ERRMC BURIED . . . . . . . . 3.310 0.682 0.341 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.373 0.842 0.421 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 6.325 0.843 0.421 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 6.723 0.857 0.428 84 100.0 84 ERRSC SURFACE . . . . . . . . 6.552 0.850 0.425 127 100.0 127 ERRSC BURIED . . . . . . . . 5.590 0.806 0.403 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.268 0.802 0.401 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 5.550 0.818 0.409 152 100.0 152 ERRALL SURFACE . . . . . . . . 5.431 0.814 0.407 243 100.0 243 ERRALL BURIED . . . . . . . . 4.519 0.747 0.373 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 2 7 22 35 35 35 DISTCA CA (P) 2.86 5.71 20.00 62.86 100.00 35 DISTCA CA (RMS) 0.65 1.25 2.14 3.55 4.99 DISTCA ALL (N) 2 15 43 124 275 296 296 DISTALL ALL (P) 0.68 5.07 14.53 41.89 92.91 296 DISTALL ALL (RMS) 0.63 1.35 2.20 3.57 5.76 DISTALL END of the results output