####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS250_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS250_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 12 - 34 4.99 10.64 LONGEST_CONTINUOUS_SEGMENT: 23 13 - 35 4.67 10.09 LCS_AVERAGE: 61.88 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 14 - 29 1.99 12.86 LCS_AVERAGE: 31.35 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 16 - 27 0.77 15.80 LCS_AVERAGE: 21.14 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 4 23 0 3 3 4 4 4 5 5 5 6 6 7 11 12 17 19 20 20 20 20 LCS_GDT F 13 F 13 3 4 23 3 3 3 4 4 5 7 12 13 17 19 19 21 21 22 22 22 26 28 29 LCS_GDT H 14 H 14 3 16 23 3 3 6 12 14 14 16 16 16 18 19 19 21 21 22 22 24 26 28 29 LCS_GDT Y 15 Y 15 11 16 23 3 5 11 11 14 14 16 16 16 18 19 20 21 21 22 22 24 27 28 29 LCS_GDT T 16 T 16 12 16 23 3 10 12 12 14 14 16 16 16 18 19 20 21 21 22 22 26 27 28 29 LCS_GDT V 17 V 17 12 16 23 9 10 12 12 14 14 16 16 17 18 19 20 21 21 23 25 26 27 28 29 LCS_GDT T 18 T 18 12 16 23 9 10 12 12 14 14 16 16 17 18 19 20 21 21 22 25 26 27 28 29 LCS_GDT D 19 D 19 12 16 23 9 10 12 12 14 14 16 16 17 18 19 20 21 21 22 25 26 27 28 29 LCS_GDT I 20 I 20 12 16 23 9 10 12 12 14 14 16 16 17 18 19 20 21 21 24 25 26 27 28 29 LCS_GDT K 21 K 21 12 16 23 9 10 12 12 14 14 16 16 17 18 19 20 21 22 24 25 26 27 28 29 LCS_GDT D 22 D 22 12 16 23 9 10 12 12 14 14 16 16 17 18 19 20 21 21 24 25 26 27 28 29 LCS_GDT L 23 L 23 12 16 23 9 10 12 12 14 14 16 16 17 18 19 20 21 22 24 25 26 27 28 29 LCS_GDT T 24 T 24 12 16 23 9 10 12 12 14 14 16 16 17 18 19 20 21 22 24 25 26 27 28 29 LCS_GDT K 25 K 25 12 16 23 9 10 12 12 14 14 16 16 17 18 19 20 21 22 24 25 26 27 28 29 LCS_GDT L 26 L 26 12 16 23 4 10 12 12 14 14 16 16 17 18 19 20 21 22 24 25 26 27 28 29 LCS_GDT G 27 G 27 12 16 23 4 6 12 12 14 14 16 16 17 18 19 20 21 22 24 25 26 27 28 29 LCS_GDT A 28 A 28 7 16 23 4 6 7 10 11 14 16 16 17 18 19 20 21 22 24 25 26 27 28 29 LCS_GDT I 29 I 29 7 16 23 4 6 7 10 11 14 16 16 17 18 19 20 21 22 24 25 26 27 28 29 LCS_GDT Y 30 Y 30 7 9 23 4 6 7 8 9 12 13 16 17 18 19 20 21 22 24 25 26 27 28 29 LCS_GDT D 31 D 31 7 9 23 4 5 7 8 9 12 14 16 17 18 19 20 21 22 24 25 26 27 28 29 LCS_GDT K 32 K 32 7 9 23 4 6 7 8 9 12 13 16 17 18 19 20 21 22 24 25 26 27 28 29 LCS_GDT T 33 T 33 7 9 23 4 6 7 8 9 12 13 16 17 18 19 20 21 22 24 25 26 27 28 29 LCS_GDT K 34 K 34 4 9 23 3 4 5 7 7 8 13 15 16 18 18 20 20 22 24 25 26 27 28 29 LCS_GDT K 35 K 35 4 8 23 3 4 5 7 7 7 8 10 13 15 15 17 19 22 24 25 26 27 28 29 LCS_GDT Y 36 Y 36 5 8 22 3 5 5 7 7 7 8 10 12 13 15 17 19 22 24 25 26 27 28 29 LCS_GDT W 37 W 37 5 8 21 4 5 5 7 7 7 8 10 12 13 15 17 19 22 24 25 26 27 28 29 LCS_GDT V 38 V 38 5 8 19 4 5 5 7 7 7 8 10 12 13 15 17 19 22 24 25 26 27 28 29 LCS_GDT Y 39 Y 39 5 8 18 4 5 5 7 7 7 8 10 12 13 15 17 19 22 24 25 26 27 28 29 LCS_GDT Q 40 Q 40 5 8 18 4 5 5 7 7 7 8 10 12 13 15 17 19 22 24 25 26 27 28 29 LCS_GDT G 41 G 41 4 7 18 3 3 4 6 7 7 8 10 12 13 15 17 19 22 24 25 26 27 28 29 LCS_GDT K 42 K 42 4 6 18 3 3 4 5 5 7 7 7 9 13 15 17 19 22 24 25 26 27 28 29 LCS_GDT P 43 P 43 3 5 18 3 3 3 5 5 7 7 7 8 13 15 17 19 22 24 25 26 27 28 29 LCS_GDT V 44 V 44 3 3 18 3 3 4 4 5 5 8 10 12 13 15 17 18 19 20 22 23 25 25 26 LCS_GDT M 45 M 45 3 3 18 2 3 4 4 5 5 6 7 10 12 15 17 18 19 20 21 21 23 24 25 LCS_GDT P 46 P 46 3 3 18 2 3 4 4 5 5 5 7 8 9 10 17 18 18 19 21 21 22 24 24 LCS_AVERAGE LCS_A: 38.12 ( 21.14 31.35 61.88 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 10 12 12 14 14 16 16 17 18 19 20 21 22 24 25 26 27 28 29 GDT PERCENT_AT 25.71 28.57 34.29 34.29 40.00 40.00 45.71 45.71 48.57 51.43 54.29 57.14 60.00 62.86 68.57 71.43 74.29 77.14 80.00 82.86 GDT RMS_LOCAL 0.25 0.32 0.77 0.77 1.33 1.33 1.99 1.99 2.88 3.09 3.29 3.53 3.86 5.45 5.64 5.77 5.90 6.03 6.20 6.37 GDT RMS_ALL_AT 14.87 14.91 15.80 15.80 14.65 14.65 12.86 12.86 10.03 10.32 10.28 10.09 10.69 9.56 9.25 9.08 8.98 8.90 8.77 8.79 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 15 Y 15 # possible swapping detected: D 19 D 19 # possible swapping detected: Y 30 Y 30 # possible swapping detected: D 31 D 31 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 11.588 0 0.134 1.521 15.575 0.238 0.095 LGA F 13 F 13 6.016 0 0.331 1.078 9.791 15.357 11.385 LGA H 14 H 14 2.617 0 0.694 1.185 8.923 65.357 35.238 LGA Y 15 Y 15 2.396 0 0.338 1.061 13.165 73.095 29.127 LGA T 16 T 16 1.342 0 0.207 0.662 1.703 79.286 80.204 LGA V 17 V 17 0.499 0 0.160 1.253 3.068 97.619 85.374 LGA T 18 T 18 0.333 0 0.081 1.009 2.994 100.000 88.571 LGA D 19 D 19 0.715 0 0.058 0.445 2.716 92.857 77.917 LGA I 20 I 20 1.409 0 0.069 1.136 4.749 81.548 72.083 LGA K 21 K 21 1.464 0 0.047 1.268 9.722 79.286 51.111 LGA D 22 D 22 1.070 0 0.099 0.381 1.773 81.429 81.488 LGA L 23 L 23 1.200 0 0.130 1.398 3.131 77.143 71.250 LGA T 24 T 24 2.023 0 0.124 1.227 5.070 64.881 59.388 LGA K 25 K 25 2.019 0 0.220 0.887 6.138 66.905 57.090 LGA L 26 L 26 0.736 0 0.151 0.599 4.780 83.810 63.869 LGA G 27 G 27 2.883 0 0.610 0.610 3.384 59.286 59.286 LGA A 28 A 28 3.652 0 0.112 0.148 6.504 50.357 42.952 LGA I 29 I 29 3.327 0 0.055 1.233 7.886 30.476 32.500 LGA Y 30 Y 30 8.620 0 0.099 1.390 19.853 10.119 3.373 LGA D 31 D 31 9.112 0 0.194 1.309 13.433 0.714 0.595 LGA K 32 K 32 11.671 0 0.546 1.672 12.610 0.000 2.434 LGA T 33 T 33 14.674 0 0.754 1.264 16.703 0.000 0.000 LGA K 34 K 34 15.929 0 0.535 1.385 20.981 0.000 0.000 LGA K 35 K 35 17.944 0 0.210 1.315 21.781 0.000 0.000 LGA Y 36 Y 36 20.616 0 0.325 1.121 24.160 0.000 0.000 LGA W 37 W 37 17.116 0 0.224 0.914 20.782 0.000 0.000 LGA V 38 V 38 16.829 0 0.052 1.217 17.838 0.000 0.000 LGA Y 39 Y 39 15.695 0 0.174 1.195 17.895 0.000 0.000 LGA Q 40 Q 40 15.793 0 0.535 0.782 17.905 0.000 0.000 LGA G 41 G 41 16.940 0 0.284 0.284 17.233 0.000 0.000 LGA K 42 K 42 18.054 0 0.595 1.248 18.905 0.000 0.000 LGA P 43 P 43 17.473 0 0.591 0.763 19.193 0.000 0.000 LGA V 44 V 44 22.819 0 0.563 0.955 25.110 0.000 0.000 LGA M 45 M 45 27.844 0 0.614 1.205 33.606 0.000 0.000 LGA P 46 P 46 27.518 0 0.495 1.214 28.303 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 8.585 8.537 9.981 34.565 28.724 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 16 1.99 45.000 42.160 0.765 LGA_LOCAL RMSD: 1.991 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.858 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 8.585 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.003839 * X + 0.115481 * Y + -0.993302 * Z + -39.980946 Y_new = 0.282276 * X + 0.953039 * Y + 0.109709 * Z + -57.285240 Z_new = 0.959326 * X + -0.279964 * Y + -0.036256 * Z + 54.132675 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.584395 -1.284603 -1.699582 [DEG: 90.7792 -73.6023 -97.3789 ] ZXZ: -1.680799 1.607060 1.854745 [DEG: -96.3027 92.0778 106.2691 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS250_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS250_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 16 1.99 42.160 8.58 REMARK ---------------------------------------------------------- MOLECULE T0548TS250_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 163 CA HIS 12 -37.919 -19.435 29.052 1.00 1.05 C ATOM 164 N HIS 12 -37.443 -20.166 28.026 1.00 0.32 N ATOM 167 C HIS 12 -39.499 -19.719 29.415 1.00 0.32 C ATOM 168 O HIS 12 -40.324 -20.449 28.785 1.00 0.32 O ATOM 169 CB HIS 12 -37.302 -18.041 28.781 1.00 0.32 C ATOM 172 CG HIS 12 -35.780 -18.418 28.883 1.00 0.32 C ATOM 173 ND1 HIS 12 -35.129 -18.972 30.053 1.00 0.32 N ATOM 174 CD2 HIS 12 -34.885 -18.495 27.847 1.00 0.32 C ATOM 175 CE1 HIS 12 -33.951 -19.429 29.677 1.00 0.32 C ATOM 176 NE2 HIS 12 -33.637 -19.127 28.279 1.00 0.32 N ATOM 180 CA PHE 13 -40.631 -20.136 31.408 1.00 0.83 C ATOM 181 N PHE 13 -39.841 -19.292 30.561 1.00 0.32 N ATOM 184 C PHE 13 -39.388 -20.181 32.383 1.00 0.32 C ATOM 185 O PHE 13 -38.531 -19.245 32.458 1.00 0.32 O ATOM 186 CB PHE 13 -41.896 -19.525 31.973 1.00 0.32 C ATOM 189 CG PHE 13 -43.218 -20.203 31.610 1.00 0.32 C ATOM 190 CD1 PHE 13 -44.292 -20.104 32.512 1.00 0.32 C ATOM 191 CD2 PHE 13 -43.415 -20.881 30.391 1.00 0.32 C ATOM 192 CE1 PHE 13 -45.531 -20.686 32.215 1.00 0.32 C ATOM 193 CE2 PHE 13 -44.655 -21.463 30.094 1.00 0.32 C ATOM 194 CZ PHE 13 -45.711 -21.367 31.006 1.00 0.32 C ATOM 200 CA HIS 14 -38.330 -21.241 34.288 1.00 1.01 C ATOM 201 N HIS 14 -39.229 -21.248 33.056 1.00 0.32 N ATOM 204 C HIS 14 -38.669 -20.580 35.627 1.00 0.32 C ATOM 205 O HIS 14 -37.928 -20.989 36.524 1.00 0.32 O ATOM 206 CB HIS 14 -36.797 -21.069 33.933 1.00 0.32 C ATOM 209 CG HIS 14 -36.269 -22.189 33.016 1.00 0.32 C ATOM 210 ND1 HIS 14 -35.653 -22.002 31.727 1.00 0.32 N ATOM 211 CD2 HIS 14 -36.267 -23.537 33.282 1.00 0.32 C ATOM 212 CE1 HIS 14 -35.309 -23.192 31.272 1.00 0.32 C ATOM 213 NE2 HIS 14 -35.657 -24.284 32.183 1.00 0.32 N ATOM 217 CA TYR 15 -39.505 -18.702 36.903 1.00 1.13 C ATOM 218 N TYR 15 -39.624 -19.714 35.848 1.00 0.32 N ATOM 221 C TYR 15 -38.473 -17.664 36.303 1.00 0.32 C ATOM 222 O TYR 15 -38.825 -17.037 35.264 1.00 0.32 O ATOM 223 CB TYR 15 -39.743 -18.941 38.446 1.00 0.32 C ATOM 226 CG TYR 15 -39.051 -20.060 39.207 1.00 0.32 C ATOM 227 CD1 TYR 15 -39.833 -21.050 39.833 1.00 0.32 C ATOM 228 CD2 TYR 15 -37.668 -20.028 39.447 1.00 0.32 C ATOM 231 CE1 TYR 15 -39.249 -21.964 40.716 1.00 0.32 C ATOM 232 CE2 TYR 15 -37.082 -20.952 40.323 1.00 0.32 C ATOM 235 CZ TYR 15 -37.874 -21.908 40.972 1.00 0.32 C ATOM 236 OH TYR 15 -37.338 -22.729 41.833 1.00 0.32 H ATOM 238 N THR 16 -37.260 -17.523 36.836 1.00 0.24 N ATOM 239 CA THR 16 -36.492 -16.327 36.796 1.00 0.25 C ATOM 240 C THR 16 -37.278 -15.191 36.364 1.00 0.08 C ATOM 241 O THR 16 -37.702 -15.364 35.232 1.00 0.37 O ATOM 242 CB THR 16 -35.227 -16.428 35.797 1.00 0.22 C ATOM 243 OG1 THR 16 -34.944 -15.173 34.994 1.00 0.05 O ATOM 248 CG2 THR 16 -35.158 -17.780 35.015 1.00 0.32 C ATOM 252 N VAL 17 -37.469 -14.156 37.078 1.00 0.18 N ATOM 253 CA VAL 17 -38.429 -13.235 36.604 1.00 0.34 C ATOM 254 C VAL 17 -38.154 -12.461 35.377 1.00 0.20 C ATOM 255 O VAL 17 -39.130 -12.006 34.761 1.00 0.15 O ATOM 256 CB VAL 17 -38.321 -12.149 37.849 1.00 0.24 C ATOM 260 CG1 VAL 17 -38.768 -12.770 39.219 1.00 0.32 C ATOM 261 CG2 VAL 17 -36.953 -11.409 38.004 1.00 0.32 C ATOM 268 N THR 18 -36.991 -12.584 34.870 1.00 0.14 N ATOM 269 CA THR 18 -36.670 -11.984 33.614 1.00 0.50 C ATOM 270 C THR 18 -37.044 -12.582 32.418 1.00 0.34 C ATOM 271 O THR 18 -37.603 -11.929 31.544 1.00 0.31 O ATOM 272 CB THR 18 -35.367 -11.079 33.733 1.00 0.17 C ATOM 276 OG1 THR 18 -34.164 -11.983 33.668 1.00 0.32 O ATOM 278 CG2 THR 18 -35.250 -10.197 35.008 1.00 0.32 C ATOM 282 N ASP 19 -36.848 -13.867 32.452 1.00 0.38 N ATOM 283 CA ASP 19 -37.212 -14.786 31.435 1.00 0.35 C ATOM 284 C ASP 19 -38.704 -14.778 31.352 1.00 0.24 C ATOM 285 O ASP 19 -39.189 -14.708 30.208 1.00 0.25 O ATOM 286 CB ASP 19 -36.458 -16.028 31.882 1.00 0.17 C ATOM 291 CG ASP 19 -34.970 -15.831 32.275 1.00 0.32 C ATOM 292 OD1 ASP 19 -34.264 -16.835 32.542 1.00 0.32 O ATOM 293 OD2 ASP 19 -34.453 -14.685 32.326 1.00 0.32 O ATOM 294 N ILE 20 -39.457 -14.848 32.372 1.00 0.41 N ATOM 295 CA ILE 20 -40.925 -14.835 32.217 1.00 0.41 C ATOM 296 C ILE 20 -41.415 -13.516 31.827 1.00 0.22 C ATOM 297 O ILE 20 -42.413 -13.545 31.110 1.00 0.20 O ATOM 298 CB ILE 20 -41.290 -15.382 33.630 1.00 0.33 C ATOM 302 CG1 ILE 20 -40.950 -14.542 34.878 1.00 0.32 C ATOM 305 CG2 ILE 20 -41.222 -16.927 33.785 1.00 0.32 C ATOM 309 CD1 ILE 20 -41.789 -14.895 36.153 1.00 0.32 C ATOM 313 N LYS 21 -40.868 -12.398 32.257 1.00 0.20 N ATOM 314 CA LYS 21 -41.239 -11.011 31.810 1.00 0.29 C ATOM 315 C LYS 21 -41.051 -11.012 30.284 1.00 0.19 C ATOM 316 O LYS 21 -41.969 -10.587 29.574 1.00 0.32 O ATOM 317 CB LYS 21 -40.614 -9.971 32.673 1.00 0.21 C ATOM 322 CG LYS 21 -41.547 -9.331 33.766 1.00 0.32 C ATOM 325 CD LYS 21 -42.027 -10.257 34.936 1.00 0.32 C ATOM 328 CE LYS 21 -43.225 -11.193 34.582 1.00 0.32 C ATOM 331 NZ LYS 21 -43.745 -11.869 35.852 1.00 0.32 N ATOM 335 N ASP 22 -39.925 -11.492 29.788 1.00 0.19 N ATOM 336 CA ASP 22 -39.614 -11.638 28.400 1.00 0.13 C ATOM 337 C ASP 22 -40.623 -12.533 27.716 1.00 0.13 C ATOM 338 O ASP 22 -40.974 -12.083 26.653 1.00 0.36 O ATOM 339 CB ASP 22 -38.248 -12.307 28.168 1.00 0.08 C ATOM 340 CG ASP 22 -37.097 -11.331 27.912 1.00 0.03 C ATOM 345 OD1 ASP 22 -37.315 -10.145 27.553 1.00 0.32 O ATOM 346 OD2 ASP 22 -35.916 -11.731 28.049 1.00 0.32 O ATOM 347 N LEU 23 -40.959 -13.695 28.056 1.00 0.26 N ATOM 348 CA LEU 23 -42.042 -14.412 27.313 1.00 0.25 C ATOM 349 C LEU 23 -43.374 -13.895 27.417 1.00 0.07 C ATOM 350 O LEU 23 -44.058 -14.126 26.415 1.00 0.10 O ATOM 351 CB LEU 23 -41.856 -15.712 28.181 1.00 0.14 C ATOM 352 CG LEU 23 -42.893 -16.803 27.834 1.00 0.06 C ATOM 353 CD1 LEU 23 -42.727 -17.191 26.355 1.00 0.09 C ATOM 354 CD2 LEU 23 -42.779 -18.039 28.759 1.00 0.04 C ATOM 366 N THR 24 -43.754 -13.291 28.496 1.00 0.08 N ATOM 367 CA THR 24 -44.853 -12.475 28.466 1.00 0.49 C ATOM 368 C THR 24 -44.944 -11.356 27.461 1.00 0.49 C ATOM 369 O THR 24 -45.807 -11.327 26.585 1.00 0.74 O ATOM 370 CB THR 24 -45.437 -12.353 29.946 1.00 0.25 C ATOM 374 OG1 THR 24 -45.703 -13.700 30.569 1.00 0.32 O ATOM 376 CG2 THR 24 -46.701 -11.440 30.012 1.00 0.32 C ATOM 380 N LYS 25 -43.898 -10.549 27.365 1.00 0.48 N ATOM 381 CA LYS 25 -43.601 -9.550 26.302 1.00 0.68 C ATOM 382 C LYS 25 -43.289 -10.176 24.893 1.00 1.06 C ATOM 383 O LYS 25 -44.107 -9.834 24.042 1.00 1.10 O ATOM 384 CB LYS 25 -42.649 -8.778 26.890 1.00 0.30 C ATOM 385 CG LYS 25 -42.627 -7.560 25.983 1.00 0.14 C ATOM 386 CD LYS 25 -41.619 -6.642 26.664 1.00 0.12 C ATOM 387 CE LYS 25 -41.461 -5.363 25.827 1.00 0.07 C ATOM 388 NZ LYS 25 -42.801 -4.645 25.722 1.00 0.05 N ATOM 402 N LEU 26 -41.889 -10.857 24.532 1.00 3.04 N ATOM 403 CA LEU 26 -41.167 -10.796 23.420 1.00 1.34 C ATOM 404 C LEU 26 -41.797 -11.674 22.269 1.00 0.42 C ATOM 405 O LEU 26 -42.040 -11.310 21.108 1.00 0.27 O ATOM 408 CB LEU 26 -40.696 -9.359 23.308 1.00 0.32 C ATOM 411 CG LEU 26 -39.646 -8.970 22.205 1.00 0.32 C ATOM 412 CD1 LEU 26 -40.193 -9.010 20.741 1.00 0.32 C ATOM 413 CD2 LEU 26 -38.319 -9.770 22.330 1.00 0.32 C ATOM 421 N GLY 27 -42.392 -12.733 22.822 1.00 0.36 N ATOM 422 CA GLY 27 -43.674 -13.319 22.441 1.00 0.35 C ATOM 423 C GLY 27 -44.613 -12.359 23.114 1.00 0.22 C ATOM 424 O GLY 27 -44.371 -12.174 24.308 1.00 0.26 O ATOM 428 N ALA 28 -45.717 -11.964 22.535 1.00 0.30 N ATOM 429 CA ALA 28 -46.812 -11.510 23.319 1.00 0.48 C ATOM 430 C ALA 28 -47.910 -12.374 23.638 1.00 0.35 C ATOM 431 O ALA 28 -48.328 -13.115 22.739 1.00 0.31 O ATOM 432 CB ALA 28 -47.277 -10.193 22.511 1.00 0.28 C ATOM 438 N ILE 29 -48.462 -12.338 24.835 1.00 0.49 N ATOM 439 CA ILE 29 -49.670 -13.225 25.195 1.00 0.65 C ATOM 440 C ILE 29 -50.865 -12.417 25.138 1.00 0.42 C ATOM 441 O ILE 29 -50.954 -11.243 25.501 1.00 0.34 O ATOM 442 CB ILE 29 -49.087 -13.358 26.744 1.00 0.25 C ATOM 443 CG1 ILE 29 -47.783 -14.247 26.988 1.00 0.20 C ATOM 444 CD1 ILE 29 -47.669 -14.800 28.451 1.00 0.07 C ATOM 450 CG2 ILE 29 -50.295 -13.940 27.582 1.00 0.32 C ATOM 457 N TYR 30 -51.867 -13.152 24.742 1.00 0.43 N ATOM 458 CA TYR 30 -53.253 -12.773 24.555 1.00 0.46 C ATOM 459 C TYR 30 -53.983 -13.737 25.293 1.00 0.27 C ATOM 460 O TYR 30 -53.825 -14.930 25.010 1.00 0.21 O ATOM 461 CB TYR 30 -53.225 -12.655 23.031 1.00 0.16 C ATOM 462 CG TYR 30 -54.615 -12.317 22.593 1.00 0.13 C ATOM 467 CD1 TYR 30 -55.220 -11.097 22.951 1.00 0.32 C ATOM 468 CD2 TYR 30 -55.340 -13.231 21.805 1.00 0.32 C ATOM 471 CE1 TYR 30 -56.531 -10.809 22.545 1.00 0.32 C ATOM 472 CE2 TYR 30 -56.644 -12.938 21.393 1.00 0.32 C ATOM 475 CZ TYR 30 -57.243 -11.728 21.765 1.00 0.32 C ATOM 476 OH TYR 30 -58.461 -11.457 21.383 1.00 0.32 H ATOM 478 N ASP 31 -54.847 -13.294 26.155 1.00 0.31 N ATOM 479 CA ASP 31 -55.802 -14.200 26.742 1.00 0.39 C ATOM 480 C ASP 31 -57.169 -13.806 26.363 1.00 0.20 C ATOM 481 O ASP 31 -57.553 -12.627 26.183 1.00 0.15 O ATOM 482 CB ASP 31 -55.550 -13.780 28.269 1.00 0.20 C ATOM 483 CG ASP 31 -54.107 -14.003 28.828 1.00 0.07 C ATOM 488 OD1 ASP 31 -53.599 -15.155 28.817 1.00 0.32 O ATOM 489 OD2 ASP 31 -53.447 -13.031 29.283 1.00 0.32 O ATOM 490 N LYS 32 -57.937 -14.835 26.391 1.00 0.34 N ATOM 491 CA LYS 32 -59.297 -14.752 26.545 1.00 0.59 C ATOM 492 C LYS 32 -59.886 -14.546 27.773 1.00 0.44 C ATOM 493 O LYS 32 -59.373 -15.122 28.743 1.00 0.42 O ATOM 494 CB LYS 32 -59.652 -15.990 25.578 1.00 0.28 C ATOM 499 CG LYS 32 -58.872 -17.351 25.809 1.00 0.32 C ATOM 502 CD LYS 32 -58.919 -17.853 27.286 1.00 0.32 C ATOM 505 CE LYS 32 -58.253 -19.250 27.447 1.00 0.32 C ATOM 508 NZ LYS 32 -58.229 -19.639 28.928 1.00 0.32 N ATOM 512 N THR 33 -60.947 -13.751 27.864 1.00 0.50 N ATOM 513 CA THR 33 -61.623 -13.379 29.172 1.00 0.56 C ATOM 514 C THR 33 -62.045 -14.817 29.482 1.00 0.18 C ATOM 515 O THR 33 -62.358 -15.582 28.546 1.00 0.46 O ATOM 516 CB THR 33 -62.755 -12.495 28.561 1.00 0.11 C ATOM 517 OG1 THR 33 -64.011 -13.301 28.445 1.00 0.05 O ATOM 518 CG2 THR 33 -62.565 -11.652 27.244 1.00 0.07 C ATOM 526 N LYS 34 -61.934 -15.078 30.760 1.00 0.37 N ATOM 527 CA LYS 34 -62.508 -15.920 31.741 1.00 0.46 C ATOM 528 C LYS 34 -63.797 -16.494 31.175 1.00 0.22 C ATOM 529 O LYS 34 -64.870 -15.860 31.233 1.00 0.24 O ATOM 530 CB LYS 34 -62.427 -15.583 33.104 1.00 0.35 C ATOM 531 CG LYS 34 -61.612 -14.306 33.106 1.00 0.28 C ATOM 532 CD LYS 34 -62.140 -13.171 32.132 1.00 0.78 C ATOM 541 CE LYS 34 -61.101 -11.990 32.149 1.00 0.32 C ATOM 544 NZ LYS 34 -61.592 -10.765 31.377 1.00 0.32 N ATOM 548 N LYS 35 -63.572 -17.652 30.733 1.00 0.49 N ATOM 549 CA LYS 35 -64.321 -18.385 30.066 1.00 1.03 C ATOM 550 C LYS 35 -65.381 -18.073 28.844 1.00 0.53 C ATOM 551 O LYS 35 -66.424 -18.665 28.487 1.00 0.48 O ATOM 552 CB LYS 35 -65.788 -18.413 31.198 1.00 0.64 C ATOM 553 CG LYS 35 -65.747 -18.486 32.814 1.00 0.18 C ATOM 560 CD LYS 35 -65.243 -19.848 33.395 1.00 0.32 C ATOM 563 CE LYS 35 -63.739 -20.177 33.138 1.00 0.32 C ATOM 566 NZ LYS 35 -62.822 -19.038 33.588 1.00 0.32 N ATOM 570 N TYR 36 -64.826 -17.200 28.076 1.00 0.49 N ATOM 571 CA TYR 36 -64.996 -16.996 26.701 1.00 0.65 C ATOM 572 C TYR 36 -63.987 -17.299 25.940 1.00 0.41 C ATOM 573 O TYR 36 -63.486 -16.250 25.774 1.00 0.38 O ATOM 574 CB TYR 36 -66.035 -15.711 26.671 1.00 0.29 C ATOM 579 CG TYR 36 -65.810 -14.787 25.457 1.00 0.32 C ATOM 580 CD1 TYR 36 -64.670 -13.963 25.398 1.00 0.32 C ATOM 581 CD2 TYR 36 -66.702 -14.756 24.369 1.00 0.32 C ATOM 584 CE1 TYR 36 -64.378 -13.193 24.270 1.00 0.32 C ATOM 585 CE2 TYR 36 -66.425 -13.963 23.241 1.00 0.32 C ATOM 588 CZ TYR 36 -65.253 -13.195 23.185 1.00 0.32 C ATOM 589 OH TYR 36 -64.970 -12.493 22.123 1.00 0.32 H ATOM 591 N TRP 37 -63.517 -18.481 25.515 1.00 0.58 N ATOM 592 CA TRP 37 -62.123 -18.752 24.764 1.00 0.75 C ATOM 593 C TRP 37 -62.570 -18.682 23.417 1.00 0.41 C ATOM 594 O TRP 37 -63.056 -19.693 22.921 1.00 0.26 O ATOM 595 CB TRP 37 -62.078 -20.111 25.646 1.00 0.27 C ATOM 596 CG TRP 37 -63.259 -20.857 26.357 1.00 0.32 C ATOM 601 CD1 TRP 37 -63.330 -20.783 27.729 1.00 0.32 C ATOM 602 CD2 TRP 37 -63.484 -22.182 26.042 1.00 0.32 C ATOM 603 NE1 TRP 37 -63.484 -22.022 28.244 1.00 0.32 N ATOM 604 CE2 TRP 37 -63.528 -22.891 27.223 1.00 0.32 C ATOM 605 CE3 TRP 37 -63.374 -22.834 24.808 1.00 0.32 C ATOM 606 CZ2 TRP 37 -63.412 -24.284 27.246 1.00 0.32 C ATOM 607 CZ3 TRP 37 -63.284 -24.236 24.803 1.00 0.32 C ATOM 608 CH2 TRP 37 -63.279 -24.955 26.016 1.00 0.32 H ATOM 615 N VAL 38 -62.221 -17.624 22.705 1.00 0.56 N ATOM 616 CA VAL 38 -62.262 -17.522 21.251 1.00 0.54 C ATOM 617 C VAL 38 -60.972 -17.728 20.666 1.00 0.47 C ATOM 618 O VAL 38 -59.935 -17.216 21.035 1.00 0.63 O ATOM 619 CB VAL 38 -63.069 -16.135 21.129 1.00 0.17 C ATOM 623 CG1 VAL 38 -64.524 -16.366 20.605 1.00 0.32 C ATOM 624 CG2 VAL 38 -62.329 -15.135 20.183 1.00 0.32 C ATOM 631 N TYR 39 -61.022 -18.411 19.557 1.00 0.45 N ATOM 632 CA TYR 39 -59.977 -18.381 18.537 1.00 0.60 C ATOM 633 C TYR 39 -60.509 -18.710 17.423 1.00 0.31 C ATOM 634 O TYR 39 -61.395 -19.540 17.467 1.00 0.64 O ATOM 635 CB TYR 39 -59.168 -19.644 19.264 1.00 0.30 C ATOM 640 CG TYR 39 -58.594 -19.544 20.675 1.00 0.32 C ATOM 641 CD1 TYR 39 -59.261 -20.165 21.748 1.00 0.32 C ATOM 642 CD2 TYR 39 -57.369 -18.897 20.906 1.00 0.32 C ATOM 645 CE1 TYR 39 -58.702 -20.152 23.031 1.00 0.32 C ATOM 646 CE2 TYR 39 -56.806 -18.894 22.190 1.00 0.32 C ATOM 649 CZ TYR 39 -57.466 -19.530 23.249 1.00 0.32 C ATOM 650 OH TYR 39 -56.926 -19.554 24.436 1.00 0.32 H ATOM 652 N GLN 40 -59.924 -18.281 16.396 1.00 0.30 N ATOM 653 CA GLN 40 -60.535 -18.260 15.156 1.00 0.21 C ATOM 654 C GLN 40 -61.388 -19.558 14.883 1.00 0.20 C ATOM 655 O GLN 40 -61.362 -20.542 15.642 1.00 0.45 O ATOM 656 CB GLN 40 -59.429 -17.923 14.129 1.00 0.09 C ATOM 661 CG GLN 40 -59.081 -16.401 14.115 1.00 0.32 C ATOM 664 CD GLN 40 -57.962 -16.109 13.096 1.00 0.32 C ATOM 665 OE1 GLN 40 -58.144 -16.319 11.919 1.00 0.32 O ATOM 666 NE2 GLN 40 -56.744 -15.606 13.521 1.00 0.32 N ATOM 669 N GLY 41 -62.308 -19.456 13.957 1.00 0.16 N ATOM 670 CA GLY 41 -63.048 -20.639 13.424 1.00 0.18 C ATOM 671 C GLY 41 -62.210 -21.852 13.233 1.00 0.03 C ATOM 672 O GLY 41 -62.603 -22.969 13.626 1.00 0.09 O ATOM 676 N LYS 42 -61.074 -21.606 12.692 1.00 0.31 N ATOM 677 CA LYS 42 -60.202 -22.598 12.409 1.00 0.50 C ATOM 678 C LYS 42 -59.548 -23.362 13.443 1.00 0.38 C ATOM 679 O LYS 42 -59.467 -24.588 13.419 1.00 0.38 O ATOM 680 CB LYS 42 -59.353 -22.205 11.084 1.00 0.16 C ATOM 681 CG LYS 42 -58.287 -23.241 10.518 1.00 0.07 C ATOM 682 CD LYS 42 -57.273 -22.554 9.533 1.00 0.04 C ATOM 683 CE LYS 42 -56.159 -23.499 8.982 1.00 0.04 C ATOM 684 NZ LYS 42 -56.685 -24.622 8.090 1.00 0.02 N ATOM 698 N PRO 43 -59.181 -22.580 14.502 1.00 0.43 N ATOM 699 CA PRO 43 -58.764 -23.048 15.846 1.00 0.70 C ATOM 700 C PRO 43 -59.672 -24.055 16.372 1.00 0.30 C ATOM 701 O PRO 43 -59.215 -25.122 16.769 1.00 0.20 O ATOM 702 CB PRO 43 -57.721 -22.151 16.415 1.00 0.36 C ATOM 706 CG PRO 43 -57.739 -20.891 15.537 1.00 0.32 C ATOM 709 CD PRO 43 -58.394 -21.354 14.217 1.00 0.32 C ATOM 712 N VAL 44 -60.921 -23.695 16.458 1.00 0.22 N ATOM 713 CA VAL 44 -61.959 -24.571 16.885 1.00 0.35 C ATOM 714 C VAL 44 -62.065 -25.835 16.304 1.00 0.19 C ATOM 715 O VAL 44 -62.053 -26.826 17.049 1.00 0.18 O ATOM 716 CB VAL 44 -63.218 -23.658 17.180 1.00 0.18 C ATOM 720 CG1 VAL 44 -63.651 -23.700 18.686 1.00 0.32 C ATOM 721 CG2 VAL 44 -64.451 -24.064 16.305 1.00 0.32 C ATOM 728 N MET 45 -62.156 -25.819 15.022 1.00 0.17 N ATOM 729 CA MET 45 -62.235 -26.994 14.331 1.00 0.25 C ATOM 730 C MET 45 -61.006 -27.968 14.472 1.00 0.28 C ATOM 731 O MET 45 -61.274 -29.128 14.785 1.00 0.19 O ATOM 732 CB MET 45 -62.644 -26.821 12.836 1.00 0.25 C ATOM 737 CG MET 45 -64.077 -27.349 12.504 1.00 0.32 C ATOM 740 SD MET 45 -65.362 -26.394 13.404 1.00 0.32 S ATOM 741 CE MET 45 -66.737 -27.589 13.590 1.00 0.32 C ATOM 745 N PRO 46 -59.640 -27.586 14.293 1.00 0.50 N ATOM 746 CA PRO 46 -58.631 -28.060 14.948 1.00 0.38 C ATOM 747 C PRO 46 -58.754 -28.734 16.235 1.00 0.15 C ATOM 748 O PRO 46 -58.436 -29.922 16.293 1.00 0.28 O ATOM 749 CB PRO 46 -57.395 -27.186 14.639 1.00 0.37 C ATOM 750 CG PRO 46 -56.538 -28.278 14.223 1.00 0.29 C ATOM 751 CD PRO 46 -57.985 -28.624 13.603 1.00 1.74 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 80.56 54.4 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 25.71 85.3 34 100.0 34 ARMSMC SURFACE . . . . . . . . 80.68 53.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 79.99 58.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.95 15.6 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 97.58 17.2 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 94.19 17.6 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 98.69 18.5 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 93.88 0.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.42 32.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 70.51 33.3 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 69.40 46.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 69.23 36.4 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 126.90 0.0 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.86 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 81.16 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 112.37 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 80.86 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 100.14 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 100.14 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 127.16 0.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 100.14 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.58 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.58 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2453 CRMSCA SECONDARY STRUCTURE . . 6.39 17 100.0 17 CRMSCA SURFACE . . . . . . . . 8.57 29 100.0 29 CRMSCA BURIED . . . . . . . . 8.65 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.72 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 6.52 85 100.0 85 CRMSMC SURFACE . . . . . . . . 8.70 143 100.0 143 CRMSMC BURIED . . . . . . . . 8.83 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.16 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 10.84 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 9.82 84 100.0 84 CRMSSC SURFACE . . . . . . . . 10.42 127 100.0 127 CRMSSC BURIED . . . . . . . . 13.94 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.01 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 8.42 152 100.0 152 CRMSALL SURFACE . . . . . . . . 9.57 243 100.0 243 CRMSALL BURIED . . . . . . . . 11.82 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.172 0.850 0.425 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 5.536 0.831 0.416 17 100.0 17 ERRCA SURFACE . . . . . . . . 7.078 0.847 0.424 29 100.0 29 ERRCA BURIED . . . . . . . . 7.631 0.863 0.431 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.492 0.893 0.446 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 5.815 0.873 0.436 85 100.0 85 ERRMC SURFACE . . . . . . . . 7.400 0.890 0.445 143 100.0 143 ERRMC BURIED . . . . . . . . 7.928 0.909 0.455 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.983 0.941 0.470 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 9.750 0.940 0.470 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 8.968 0.939 0.470 84 100.0 84 ERRSC SURFACE . . . . . . . . 9.327 0.937 0.469 127 100.0 127 ERRSC BURIED . . . . . . . . 12.854 0.956 0.478 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.708 0.913 0.457 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 7.440 0.903 0.451 152 100.0 152 ERRALL SURFACE . . . . . . . . 8.315 0.910 0.455 243 100.0 243 ERRALL BURIED . . . . . . . . 10.510 0.931 0.465 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 9 28 35 35 DISTCA CA (P) 0.00 0.00 2.86 25.71 80.00 35 DISTCA CA (RMS) 0.00 0.00 2.40 4.09 6.43 DISTCA ALL (N) 0 0 6 46 196 296 296 DISTALL ALL (P) 0.00 0.00 2.03 15.54 66.22 296 DISTALL ALL (RMS) 0.00 0.00 2.65 4.13 6.77 DISTALL END of the results output