####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS244_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS244_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 4.23 4.23 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 12 - 29 1.95 4.31 LONGEST_CONTINUOUS_SEGMENT: 18 13 - 30 1.76 4.36 LCS_AVERAGE: 35.51 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 14 - 28 0.90 5.32 LONGEST_CONTINUOUS_SEGMENT: 15 15 - 29 0.98 5.15 LCS_AVERAGE: 25.39 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 18 35 3 3 4 4 10 12 19 21 23 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT F 13 F 13 3 18 35 3 4 10 15 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT H 14 H 14 15 18 35 3 10 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT Y 15 Y 15 15 18 35 3 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT T 16 T 16 15 18 35 7 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT V 17 V 17 15 18 35 8 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT T 18 T 18 15 18 35 8 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT D 19 D 19 15 18 35 7 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT I 20 I 20 15 18 35 7 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT K 21 K 21 15 18 35 8 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT D 22 D 22 15 18 35 8 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT L 23 L 23 15 18 35 8 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT T 24 T 24 15 18 35 8 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT K 25 K 25 15 18 35 8 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT L 26 L 26 15 18 35 8 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT G 27 G 27 15 18 35 8 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT A 28 A 28 15 18 35 8 12 14 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT I 29 I 29 15 18 35 2 9 13 15 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT Y 30 Y 30 3 18 35 3 3 4 4 13 18 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT D 31 D 31 5 17 35 5 5 5 6 14 17 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT K 32 K 32 5 17 35 5 5 5 5 16 18 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT T 33 T 33 5 6 35 5 5 5 5 6 6 18 20 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT K 34 K 34 5 6 35 5 5 5 5 6 6 7 7 11 26 30 31 32 34 35 35 35 35 35 35 LCS_GDT K 35 K 35 5 6 35 5 5 5 5 7 17 19 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT Y 36 Y 36 3 4 35 3 4 4 8 15 17 18 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT W 37 W 37 3 4 35 0 4 4 4 9 17 18 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT V 38 V 38 4 4 35 0 4 4 14 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT Y 39 Y 39 4 4 35 3 3 4 4 4 6 6 7 16 21 22 26 30 33 35 35 35 35 35 35 LCS_GDT Q 40 Q 40 4 4 35 3 3 4 4 4 4 16 18 20 22 27 31 32 34 35 35 35 35 35 35 LCS_GDT G 41 G 41 4 4 35 3 3 4 4 4 6 9 14 16 24 27 31 32 34 35 35 35 35 35 35 LCS_GDT K 42 K 42 3 4 35 3 3 4 4 5 7 11 14 16 24 27 31 32 34 35 35 35 35 35 35 LCS_GDT P 43 P 43 3 4 35 6 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 LCS_GDT V 44 V 44 3 3 35 3 3 3 4 4 17 19 21 25 27 30 30 32 34 35 35 35 35 35 35 LCS_GDT M 45 M 45 3 3 35 3 3 3 4 14 17 19 21 25 27 30 30 31 34 35 35 35 35 35 35 LCS_GDT P 46 P 46 3 3 35 3 3 3 3 3 5 5 21 24 26 28 29 31 34 35 35 35 35 35 35 LCS_AVERAGE LCS_A: 53.63 ( 25.39 35.51 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 12 15 16 17 19 20 21 25 27 30 31 32 34 35 35 35 35 35 35 GDT PERCENT_AT 22.86 34.29 42.86 45.71 48.57 54.29 57.14 60.00 71.43 77.14 85.71 88.57 91.43 97.14 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.21 0.47 0.90 0.95 1.18 1.63 1.79 2.01 2.63 2.89 3.39 3.76 3.85 4.06 4.23 4.23 4.23 4.23 4.23 4.23 GDT RMS_ALL_AT 5.55 5.64 5.37 5.30 5.05 4.57 4.44 4.51 4.47 4.43 4.33 4.28 4.25 4.24 4.23 4.23 4.23 4.23 4.23 4.23 # Checking swapping # possible swapping detected: Y 15 Y 15 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 7.199 0 0.624 0.851 9.463 17.262 17.667 LGA F 13 F 13 3.069 0 0.636 1.194 8.589 54.762 33.636 LGA H 14 H 14 1.891 0 0.444 1.137 6.527 68.810 48.524 LGA Y 15 Y 15 2.142 0 0.099 0.297 4.513 70.833 53.810 LGA T 16 T 16 1.175 0 0.036 0.105 1.550 81.548 82.789 LGA V 17 V 17 1.033 0 0.067 0.106 2.100 85.952 80.408 LGA T 18 T 18 0.674 0 0.059 0.166 1.306 95.238 90.612 LGA D 19 D 19 0.524 0 0.020 0.138 1.611 92.857 86.071 LGA I 20 I 20 1.485 0 0.013 0.653 4.186 79.286 69.583 LGA K 21 K 21 1.571 0 0.046 1.116 6.680 79.286 55.238 LGA D 22 D 22 0.654 0 0.040 0.102 0.945 95.238 94.048 LGA L 23 L 23 0.750 0 0.026 0.301 1.434 90.476 87.083 LGA T 24 T 24 0.783 0 0.054 1.145 3.365 90.476 81.020 LGA K 25 K 25 0.611 0 0.074 0.885 4.533 90.476 74.074 LGA L 26 L 26 0.635 0 0.071 1.377 4.034 92.857 77.619 LGA G 27 G 27 0.652 0 0.012 0.012 0.987 90.476 90.476 LGA A 28 A 28 1.052 0 0.704 0.646 3.054 75.833 78.762 LGA I 29 I 29 1.853 0 0.518 1.434 7.252 51.071 43.214 LGA Y 30 Y 30 5.488 0 0.029 1.412 8.465 20.595 28.214 LGA D 31 D 31 6.998 0 0.346 1.185 9.119 19.762 11.845 LGA K 32 K 32 3.462 0 0.052 1.050 11.490 38.929 26.561 LGA T 33 T 33 6.755 0 0.075 0.686 9.421 12.381 10.748 LGA K 34 K 34 8.726 0 0.149 0.716 15.913 5.000 2.381 LGA K 35 K 35 5.525 0 0.153 0.165 10.798 25.357 14.868 LGA Y 36 Y 36 5.689 0 0.558 1.298 7.669 32.262 24.246 LGA W 37 W 37 4.837 0 0.614 0.970 12.713 41.786 13.639 LGA V 38 V 38 3.576 0 0.590 0.528 8.077 41.429 29.320 LGA Y 39 Y 39 8.377 0 0.580 0.540 19.610 8.452 2.817 LGA Q 40 Q 40 8.063 0 0.373 0.406 13.872 9.048 4.550 LGA G 41 G 41 6.832 0 0.304 0.304 7.878 11.905 11.905 LGA K 42 K 42 7.065 0 0.603 0.753 16.306 16.667 7.937 LGA P 43 P 43 3.022 0 0.585 0.687 4.054 51.905 54.762 LGA V 44 V 44 4.412 0 0.611 0.608 7.391 32.976 25.782 LGA M 45 M 45 4.268 0 0.577 1.332 9.487 38.929 26.310 LGA P 46 P 46 6.095 0 0.654 0.615 7.446 17.976 22.517 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 4.225 4.188 5.937 52.231 44.658 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 21 2.01 60.000 56.196 0.995 LGA_LOCAL RMSD: 2.011 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 4.511 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 4.225 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.161488 * X + 0.568537 * Y + 0.806652 * Z + -40.137852 Y_new = 0.926816 * X + -0.193422 * Y + 0.321870 * Z + -23.899820 Z_new = 0.339020 * X + 0.799596 * Y + -0.495693 * Z + 23.877323 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.743304 -0.345875 2.125741 [DEG: 99.8840 -19.8172 121.7960 ] ZXZ: 1.950457 2.089429 0.401014 [DEG: 111.7530 119.7155 22.9764 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS244_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS244_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 21 2.01 56.196 4.23 REMARK ---------------------------------------------------------- MOLECULE T0548TS244_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 87 N HIS 12 -43.077 -22.581 38.502 1.00999.00 N ATOM 88 CA HIS 12 -43.644 -23.800 37.950 1.00999.00 C ATOM 89 CB HIS 12 -45.031 -23.523 37.368 1.00999.00 C ATOM 90 CG HIS 12 -45.688 -24.728 36.772 1.00999.00 C ATOM 91 CD2 HIS 12 -46.001 -25.178 35.422 1.00999.00 C ATOM 92 ND1 HIS 12 -46.176 -25.765 37.536 1.00999.00 N ATOM 93 CE1 HIS 12 -46.705 -26.697 36.722 1.00999.00 C ATOM 94 NE2 HIS 12 -46.603 -26.352 35.453 1.00999.00 N ATOM 95 O HIS 12 -42.720 -25.585 36.681 1.00999.00 O ATOM 96 C HIS 12 -42.802 -24.368 36.852 1.00999.00 C ATOM 97 N PHE 13 -42.160 -23.489 36.090 1.00999.00 N ATOM 98 CA PHE 13 -41.307 -23.922 34.990 1.00999.00 C ATOM 99 CB PHE 13 -41.484 -23.024 33.763 1.00999.00 C ATOM 100 CG PHE 13 -42.834 -23.142 33.115 1.00999.00 C ATOM 101 CD1 PHE 13 -43.792 -22.159 33.298 1.00999.00 C ATOM 102 CD2 PHE 13 -43.147 -24.234 32.324 1.00999.00 C ATOM 103 CE1 PHE 13 -45.034 -22.267 32.701 1.00999.00 C ATOM 104 CE2 PHE 13 -44.389 -24.339 31.729 1.00999.00 C ATOM 105 CZ PHE 13 -45.332 -23.362 31.915 1.00999.00 C ATOM 106 O PHE 13 -39.033 -24.239 34.415 1.00999.00 O ATOM 107 C PHE 13 -39.841 -23.945 35.289 1.00999.00 C ATOM 108 N HIS 14 -39.302 -23.595 36.569 1.00999.00 N ATOM 109 CA HIS 14 -37.898 -23.560 36.891 1.00999.00 C ATOM 110 CB HIS 14 -37.267 -24.937 36.680 1.00999.00 C ATOM 111 CG HIS 14 -37.861 -26.013 37.534 1.00999.00 C ATOM 112 CD2 HIS 14 -38.700 -27.180 37.301 1.00999.00 C ATOM 113 ND1 HIS 14 -37.673 -26.071 38.897 1.00999.00 N ATOM 114 CE1 HIS 14 -38.326 -27.140 39.385 1.00999.00 C ATOM 115 NE2 HIS 14 -38.945 -27.811 38.432 1.00999.00 N ATOM 116 O HIS 14 -35.997 -22.585 35.779 1.00999.00 O ATOM 117 C HIS 14 -37.181 -22.460 36.103 1.00999.00 C ATOM 118 N TYR 15 -37.913 -21.396 35.767 1.00999.00 N ATOM 119 CA TYR 15 -37.341 -20.266 35.039 1.00999.00 C ATOM 120 CB TYR 15 -38.164 -20.051 33.766 1.00999.00 C ATOM 121 CG TYR 15 -38.140 -21.226 32.815 1.00999.00 C ATOM 122 CD1 TYR 15 -39.249 -21.533 32.039 1.00999.00 C ATOM 123 CD2 TYR 15 -37.010 -22.024 32.699 1.00999.00 C ATOM 124 CE1 TYR 15 -39.238 -22.606 31.165 1.00999.00 C ATOM 125 CE2 TYR 15 -36.979 -23.099 31.831 1.00999.00 C ATOM 126 CZ TYR 15 -38.107 -23.386 31.063 1.00999.00 C ATOM 127 OH TYR 15 -38.092 -24.454 30.195 1.00999.00 H ATOM 128 O TYR 15 -37.929 -19.077 37.011 1.00999.00 O ATOM 129 C TYR 15 -37.338 -19.049 35.934 1.00999.00 C ATOM 130 N THR 16 -36.643 -18.000 35.524 1.00999.00 N ATOM 131 CA THR 16 -36.575 -16.810 36.363 1.00999.00 C ATOM 132 CB THR 16 -35.213 -16.101 36.227 1.00999.00 C ATOM 133 CG2 THR 16 -34.079 -17.056 36.565 1.00999.00 C ATOM 134 OG1 THR 16 -35.043 -15.644 34.881 1.00999.00 O ATOM 135 O THR 16 -38.330 -15.966 34.957 1.00999.00 O ATOM 136 C THR 16 -37.719 -15.853 36.021 1.00999.00 C ATOM 137 N VAL 17 -38.000 -14.919 36.944 1.00999.00 N ATOM 138 CA VAL 17 -39.050 -13.943 36.664 1.00999.00 C ATOM 139 CB VAL 17 -39.243 -13.024 37.884 1.00999.00 C ATOM 140 CG1 VAL 17 -40.186 -11.879 37.544 1.00999.00 C ATOM 141 CG2 VAL 17 -39.770 -13.818 39.070 1.00999.00 C ATOM 142 O VAL 17 -39.627 -12.790 34.641 1.00999.00 O ATOM 143 C VAL 17 -38.729 -13.144 35.406 1.00999.00 C ATOM 144 N THR 18 -37.448 -12.859 35.194 1.00999.00 N ATOM 145 CA THR 18 -37.024 -12.098 34.015 1.00999.00 C ATOM 146 CB THR 18 -35.512 -11.800 34.033 1.00999.00 C ATOM 147 CG2 THR 18 -35.100 -11.066 32.767 1.00999.00 C ATOM 148 OG1 THR 18 -35.197 -10.979 35.163 1.00999.00 O ATOM 149 O THR 18 -37.716 -12.213 31.722 1.00999.00 O ATOM 150 C THR 18 -37.326 -12.831 32.712 1.00999.00 C ATOM 151 N ASP 19 -37.144 -14.147 32.716 1.00999.00 N ATOM 152 CA ASP 19 -37.405 -14.952 31.522 1.00999.00 C ATOM 153 CB ASP 19 -37.008 -16.420 31.693 1.00999.00 C ATOM 154 CG ASP 19 -35.506 -16.620 31.708 1.00999.00 C ATOM 155 OD1 ASP 19 -34.777 -15.681 31.322 1.00999.00 O ATOM 156 OD2 ASP 19 -35.055 -17.714 32.105 1.00999.00 O ATOM 157 O ASP 19 -39.185 -14.617 29.967 1.00999.00 O ATOM 158 C ASP 19 -38.859 -14.848 31.132 1.00999.00 C ATOM 159 N ILE 20 -39.745 -15.018 32.109 1.00999.00 N ATOM 160 CA ILE 20 -41.178 -14.938 31.850 1.00999.00 C ATOM 161 CB ILE 20 -42.005 -15.313 33.094 1.00999.00 C ATOM 162 CG1 ILE 20 -41.759 -16.772 33.480 1.00999.00 C ATOM 163 CG2 ILE 20 -43.481 -15.030 32.855 1.00999.00 C ATOM 164 CD1 ILE 20 -42.157 -17.762 32.407 1.00999.00 C ATOM 165 O ILE 20 -42.382 -13.379 30.439 1.00999.00 O ATOM 166 C ILE 20 -41.560 -13.537 31.358 1.00999.00 C ATOM 167 N LYS 21 -40.981 -12.515 31.983 1.00999.00 N ATOM 168 CA LYS 21 -41.287 -11.148 31.595 1.00999.00 C ATOM 169 CB LYS 21 -40.594 -10.158 32.533 1.00999.00 C ATOM 170 CG LYS 21 -41.173 -10.128 33.939 1.00999.00 C ATOM 171 CD LYS 21 -40.437 -9.128 34.817 1.00999.00 C ATOM 172 CE LYS 21 -41.022 -9.088 36.220 1.00999.00 C ATOM 173 NZ LYS 21 -40.286 -8.142 37.102 1.00999.00 N ATOM 174 O LYS 21 -41.575 -10.185 29.400 1.00999.00 O ATOM 175 C LYS 21 -40.881 -10.895 30.143 1.00999.00 C ATOM 176 N ASP 22 -39.776 -11.512 29.740 1.00999.00 N ATOM 177 CA ASP 22 -39.294 -11.349 28.382 1.00999.00 C ATOM 178 CB ASP 22 -37.921 -12.004 28.221 1.00999.00 C ATOM 179 CG ASP 22 -36.826 -11.251 28.951 1.00999.00 C ATOM 180 OD1 ASP 22 -37.067 -10.092 29.349 1.00999.00 O ATOM 181 OD2 ASP 22 -35.728 -11.820 29.124 1.00999.00 O ATOM 182 O ASP 22 -40.523 -11.375 26.325 1.00999.00 O ATOM 183 C ASP 22 -40.283 -11.948 27.387 1.00999.00 C ATOM 184 N LEU 23 -40.862 -13.098 27.726 1.00999.00 N ATOM 185 CA LEU 23 -41.836 -13.735 26.845 1.00999.00 C ATOM 186 CB LEU 23 -42.212 -15.127 27.380 1.00999.00 C ATOM 187 CG LEU 23 -41.150 -16.213 27.546 1.00999.00 C ATOM 188 CD1 LEU 23 -41.833 -17.481 28.043 1.00999.00 C ATOM 189 CD2 LEU 23 -40.441 -16.472 26.226 1.00999.00 C ATOM 190 O LEU 23 -43.551 -12.687 25.532 1.00999.00 O ATOM 191 C LEU 23 -43.059 -12.840 26.652 1.00999.00 C ATOM 192 N THR 24 -43.536 -12.239 27.737 1.00999.00 N ATOM 193 CA THR 24 -44.642 -11.275 27.662 1.00999.00 C ATOM 194 CB THR 24 -45.092 -10.789 29.039 1.00999.00 C ATOM 195 CG2 THR 24 -46.187 -9.758 28.891 1.00999.00 C ATOM 196 OG1 THR 24 -45.580 -11.905 29.783 1.00999.00 O ATOM 197 O THR 24 -45.060 -9.714 25.886 1.00999.00 O ATOM 198 C THR 24 -44.281 -10.087 26.763 1.00999.00 C ATOM 199 N LYS 25 -43.112 -9.502 26.960 1.00999.00 N ATOM 200 CA LYS 25 -42.678 -8.340 26.193 1.00999.00 C ATOM 201 CB LYS 25 -41.360 -7.794 26.750 1.00999.00 C ATOM 202 CG LYS 25 -41.491 -7.120 28.106 1.00999.00 C ATOM 203 CD LYS 25 -40.145 -6.620 28.605 1.00999.00 C ATOM 204 CE LYS 25 -40.275 -5.959 29.968 1.00999.00 C ATOM 205 NZ LYS 25 -38.956 -5.502 30.490 1.00999.00 N ATOM 206 O LYS 25 -42.801 -7.851 23.854 1.00999.00 O ATOM 207 C LYS 25 -42.506 -8.680 24.714 1.00999.00 C ATOM 208 N LEU 26 -42.043 -9.893 24.418 1.00999.00 N ATOM 209 CA LEU 26 -41.874 -10.328 23.024 1.00999.00 C ATOM 210 CB LEU 26 -40.976 -11.565 22.950 1.00999.00 C ATOM 211 CG LEU 26 -39.514 -11.365 23.353 1.00999.00 C ATOM 212 CD1 LEU 26 -38.772 -12.693 23.363 1.00999.00 C ATOM 213 CD2 LEU 26 -38.826 -10.382 22.416 1.00999.00 C ATOM 214 O LEU 26 -43.201 -10.859 21.111 1.00999.00 O ATOM 215 C LEU 26 -43.197 -10.632 22.328 1.00999.00 C ATOM 216 N GLY 27 -44.298 -10.638 23.092 1.00999.00 N ATOM 217 CA GLY 27 -45.589 -10.908 22.494 1.00999.00 C ATOM 218 O GLY 27 -46.797 -12.779 21.614 1.00999.00 O ATOM 219 C GLY 27 -45.950 -12.376 22.416 1.00999.00 C ATOM 220 N ALA 28 -45.307 -13.186 23.248 1.00999.00 N ATOM 221 CA ALA 28 -45.549 -14.616 23.234 1.00999.00 C ATOM 222 CB ALA 28 -44.359 -15.359 23.826 1.00999.00 C ATOM 223 O ALA 28 -47.170 -16.255 23.898 1.00999.00 O ATOM 224 C ALA 28 -46.780 -15.090 23.997 1.00999.00 C ATOM 225 N ILE 29 -47.393 -14.188 24.757 1.00999.00 N ATOM 226 CA ILE 29 -48.578 -14.532 25.525 1.00999.00 C ATOM 227 CB ILE 29 -48.354 -14.490 27.048 1.00999.00 C ATOM 228 CG1 ILE 29 -47.232 -15.450 27.447 1.00999.00 C ATOM 229 CG2 ILE 29 -49.648 -14.791 27.786 1.00999.00 C ATOM 230 CD1 ILE 29 -45.853 -14.827 27.414 1.00999.00 C ATOM 231 O ILE 29 -50.623 -13.218 26.019 1.00999.00 O ATOM 232 C ILE 29 -49.807 -13.668 25.208 1.00999.00 C ATOM 233 N TYR 30 -51.481 -14.190 33.822 1.00999.00 N ATOM 234 CA TYR 30 -51.715 -15.347 32.952 1.00999.00 C ATOM 235 CB TYR 30 -50.549 -16.334 33.046 1.00999.00 C ATOM 236 CG TYR 30 -49.271 -15.832 32.414 1.00999.00 C ATOM 237 CD1 TYR 30 -48.039 -16.076 33.011 1.00999.00 C ATOM 238 CD2 TYR 30 -49.298 -15.118 31.224 1.00999.00 C ATOM 239 CE1 TYR 30 -46.865 -15.620 32.440 1.00999.00 C ATOM 240 CE2 TYR 30 -48.134 -14.657 30.638 1.00999.00 C ATOM 241 CZ TYR 30 -46.912 -14.913 31.258 1.00999.00 C ATOM 242 OH TYR 30 -45.745 -14.461 30.689 1.00999.00 H ATOM 243 O TYR 30 -53.177 -16.536 34.429 1.00999.00 O ATOM 244 C TYR 30 -53.017 -16.066 33.301 1.00999.00 C ATOM 245 N ASP 31 -53.947 -16.158 32.358 1.00999.00 N ATOM 246 CA ASP 31 -55.162 -16.907 32.640 1.00999.00 C ATOM 247 CB ASP 31 -56.334 -16.329 31.844 1.00999.00 C ATOM 248 CG ASP 31 -56.190 -16.545 30.350 1.00999.00 C ATOM 249 OD1 ASP 31 -55.384 -17.412 29.951 1.00999.00 O ATOM 250 OD2 ASP 31 -56.880 -15.848 29.579 1.00999.00 O ATOM 251 O ASP 31 -53.705 -18.675 31.938 1.00999.00 O ATOM 252 C ASP 31 -54.843 -18.361 32.293 1.00999.00 C ATOM 253 N LYS 32 -55.811 -19.271 32.403 1.00999.00 N ATOM 254 CA LYS 32 -55.543 -20.676 32.105 1.00999.00 C ATOM 255 CB LYS 32 -56.825 -21.502 32.224 1.00999.00 C ATOM 256 CG LYS 32 -56.637 -22.984 31.942 1.00999.00 C ATOM 257 CD LYS 32 -57.938 -23.750 32.119 1.00999.00 C ATOM 258 CE LYS 32 -57.759 -25.224 31.797 1.00999.00 C ATOM 259 NZ LYS 32 -59.027 -25.988 31.965 1.00999.00 N ATOM 260 O LYS 32 -53.997 -21.573 30.503 1.00999.00 O ATOM 261 C LYS 32 -54.967 -20.840 30.702 1.00999.00 C ATOM 262 N THR 33 -55.599 -20.160 29.666 1.00999.00 N ATOM 263 CA THR 33 -55.152 -20.221 28.277 1.00999.00 C ATOM 264 CB THR 33 -56.118 -19.433 27.374 1.00999.00 C ATOM 265 CG2 THR 33 -55.643 -19.467 25.928 1.00999.00 C ATOM 266 OG1 THR 33 -57.423 -20.019 27.439 1.00999.00 O ATOM 267 O THR 33 -52.915 -20.217 27.392 1.00999.00 O ATOM 268 C THR 33 -53.733 -19.658 28.123 1.00999.00 C ATOM 269 N LYS 34 -53.450 -18.558 28.813 1.00999.00 N ATOM 270 CA LYS 34 -52.131 -17.940 28.744 1.00999.00 C ATOM 271 CB LYS 34 -52.132 -16.674 29.602 1.00999.00 C ATOM 272 CG LYS 34 -52.956 -15.535 29.027 1.00999.00 C ATOM 273 CD LYS 34 -52.897 -14.304 29.918 1.00999.00 C ATOM 274 CE LYS 34 -53.753 -13.178 29.363 1.00999.00 C ATOM 275 NZ LYS 34 -53.212 -12.652 28.079 1.00999.00 N ATOM 276 O LYS 34 -49.971 -18.957 28.617 1.00999.00 O ATOM 277 C LYS 34 -51.046 -18.890 29.214 1.00999.00 C ATOM 278 N LYS 35 -51.364 -19.670 30.250 1.00999.00 N ATOM 279 CA LYS 35 -50.346 -20.551 30.809 1.00999.00 C ATOM 280 CB LYS 35 -50.866 -21.104 32.137 1.00999.00 C ATOM 281 CG LYS 35 -50.931 -20.078 33.256 1.00999.00 C ATOM 282 CD LYS 35 -51.474 -20.689 34.536 1.00999.00 C ATOM 283 CE LYS 35 -51.551 -19.659 35.650 1.00999.00 C ATOM 284 NZ LYS 35 -52.122 -20.233 36.900 1.00999.00 N ATOM 285 O LYS 35 -48.855 -22.098 29.760 1.00999.00 O ATOM 286 C LYS 35 -50.005 -21.686 29.857 1.00999.00 C ATOM 287 N TYR 36 -51.113 -22.018 29.052 1.00999.00 N ATOM 288 CA TYR 36 -50.872 -23.108 28.108 1.00999.00 C ATOM 289 CB TYR 36 -52.197 -23.648 27.565 1.00999.00 C ATOM 290 CG TYR 36 -52.036 -24.748 26.541 1.00999.00 C ATOM 291 CD1 TYR 36 -51.761 -26.051 26.935 1.00999.00 C ATOM 292 CD2 TYR 36 -52.157 -24.481 25.184 1.00999.00 C ATOM 293 CE1 TYR 36 -51.612 -27.064 26.007 1.00999.00 C ATOM 294 CE2 TYR 36 -52.012 -25.481 24.242 1.00999.00 C ATOM 295 CZ TYR 36 -51.738 -26.780 24.664 1.00999.00 C ATOM 296 OH TYR 36 -51.590 -27.788 23.738 1.00999.00 H ATOM 297 O TYR 36 -49.016 -23.262 26.602 1.00999.00 O ATOM 298 C TYR 36 -49.980 -22.600 26.989 1.00999.00 C ATOM 299 N TRP 37 -50.245 -21.390 26.544 1.00999.00 N ATOM 300 CA TRP 37 -49.407 -20.792 25.510 1.00999.00 C ATOM 301 CB TRP 37 -50.000 -19.462 25.043 1.00999.00 C ATOM 302 CG TRP 37 -51.217 -19.618 24.184 1.00999.00 C ATOM 303 CD1 TRP 37 -51.494 -20.651 23.335 1.00999.00 C ATOM 304 CD2 TRP 37 -52.324 -18.712 24.089 1.00999.00 C ATOM 305 CE2 TRP 37 -53.232 -19.260 23.165 1.00999.00 C ATOM 306 CE3 TRP 37 -52.634 -17.492 24.695 1.00999.00 C ATOM 307 NE1 TRP 37 -52.705 -20.446 22.716 1.00999.00 N ATOM 308 CZ2 TRP 37 -54.431 -18.630 22.833 1.00999.00 C ATOM 309 CZ3 TRP 37 -53.822 -16.871 24.364 1.00999.00 C ATOM 310 CH2 TRP 37 -54.707 -17.438 23.441 1.00999.00 H ATOM 311 O TRP 37 -47.015 -20.780 25.327 1.00999.00 O ATOM 312 C TRP 37 -47.993 -20.597 26.051 1.00999.00 C ATOM 313 N VAL 38 -47.890 -20.235 27.325 1.00999.00 N ATOM 314 CA VAL 38 -46.591 -20.035 27.947 1.00999.00 C ATOM 315 CB VAL 38 -46.721 -19.501 29.387 1.00999.00 C ATOM 316 CG1 VAL 38 -45.368 -19.509 30.081 1.00999.00 C ATOM 317 CG2 VAL 38 -47.315 -18.102 29.385 1.00999.00 C ATOM 318 O VAL 38 -44.611 -21.347 27.573 1.00999.00 O ATOM 319 C VAL 38 -45.792 -21.309 27.840 1.00999.00 C ATOM 320 N TYR 39 -46.532 -22.495 27.975 1.00999.00 N ATOM 321 CA TYR 39 -45.875 -23.779 28.032 1.00999.00 C ATOM 322 CB TYR 39 -46.897 -24.856 28.400 1.00999.00 C ATOM 323 CG TYR 39 -46.338 -26.260 28.396 1.00999.00 C ATOM 324 CD1 TYR 39 -45.588 -26.731 29.466 1.00999.00 C ATOM 325 CD2 TYR 39 -46.560 -27.110 27.321 1.00999.00 C ATOM 326 CE1 TYR 39 -45.072 -28.013 29.472 1.00999.00 C ATOM 327 CE2 TYR 39 -46.052 -28.397 27.307 1.00999.00 C ATOM 328 CZ TYR 39 -45.303 -28.842 28.395 1.00999.00 C ATOM 329 OH TYR 39 -44.790 -30.120 28.399 1.00999.00 H ATOM 330 O TYR 39 -44.038 -24.398 26.638 1.00999.00 O ATOM 331 C TYR 39 -45.220 -24.058 26.701 1.00999.00 C ATOM 332 N GLN 40 -45.987 -23.914 25.625 1.00999.00 N ATOM 333 CA GLN 40 -45.463 -24.153 24.286 1.00999.00 C ATOM 334 CB GLN 40 -46.583 -24.085 23.246 1.00999.00 C ATOM 335 CG GLN 40 -47.594 -25.217 23.345 1.00999.00 C ATOM 336 CD GLN 40 -48.730 -25.072 22.352 1.00999.00 C ATOM 337 OE1 GLN 40 -49.055 -23.964 21.923 1.00999.00 O ATOM 338 NE2 GLN 40 -49.339 -26.193 21.985 1.00999.00 N ATOM 339 O GLN 40 -43.380 -23.518 23.243 1.00999.00 O ATOM 340 C GLN 40 -44.344 -23.159 23.929 1.00999.00 C ATOM 341 N GLY 41 -44.441 -21.942 24.597 1.00999.00 N ATOM 342 CA GLY 41 -43.414 -20.959 24.261 1.00999.00 C ATOM 343 O GLY 41 -41.072 -21.399 23.982 1.00999.00 O ATOM 344 C GLY 41 -42.040 -21.409 24.744 1.00999.00 C ATOM 345 N LYS 42 -41.957 -21.806 26.010 1.00999.00 N ATOM 346 CA LYS 42 -40.711 -22.252 26.562 1.00999.00 C ATOM 347 CB LYS 42 -40.833 -22.466 28.073 1.00999.00 C ATOM 348 CG LYS 42 -41.049 -21.186 28.866 1.00999.00 C ATOM 349 CD LYS 42 -39.844 -20.264 28.762 1.00999.00 C ATOM 350 CE LYS 42 -40.021 -19.027 29.629 1.00999.00 C ATOM 351 NZ LYS 42 -38.867 -18.095 29.505 1.00999.00 N ATOM 352 O LYS 42 -39.076 -23.694 25.541 1.00999.00 O ATOM 353 C LYS 42 -40.251 -23.535 25.869 1.00999.00 C ATOM 354 N PRO 43 -41.195 -24.429 25.622 1.00999.00 N ATOM 355 CA PRO 43 -40.885 -25.667 24.931 1.00999.00 C ATOM 356 CB PRO 43 -42.135 -26.435 24.821 1.00999.00 C ATOM 357 CG PRO 43 -42.802 -26.104 26.130 1.00999.00 C ATOM 358 CD PRO 43 -42.613 -24.598 26.193 1.00999.00 C ATOM 359 O PRO 43 -39.170 -25.836 23.230 1.00999.00 O ATOM 360 C PRO 43 -40.269 -25.373 23.554 1.00999.00 C ATOM 361 N VAL 44 -40.736 -24.212 22.938 1.00999.00 N ATOM 362 CA VAL 44 -40.239 -23.951 21.606 1.00999.00 C ATOM 363 CB VAL 44 -41.335 -23.210 20.755 1.00999.00 C ATOM 364 CG1 VAL 44 -40.752 -22.640 19.450 1.00999.00 C ATOM 365 CG2 VAL 44 -42.495 -24.166 20.499 1.00999.00 C ATOM 366 O VAL 44 -38.023 -23.418 20.877 1.00999.00 O ATOM 367 C VAL 44 -38.939 -23.169 21.663 1.00999.00 C ATOM 368 N MET 45 -38.850 -22.224 22.587 1.00999.00 N ATOM 369 CA MET 45 -37.634 -21.446 22.703 1.00999.00 C ATOM 370 CB MET 45 -37.817 -20.310 23.712 1.00999.00 C ATOM 371 CG MET 45 -38.759 -19.212 23.243 1.00999.00 C ATOM 372 SD MET 45 -38.170 -18.373 21.760 1.00999.00 S ATOM 373 CE MET 45 -36.724 -17.530 22.402 1.00999.00 C ATOM 374 O MET 45 -35.464 -22.438 22.420 1.00999.00 O ATOM 375 C MET 45 -36.480 -22.366 23.113 1.00999.00 C ATOM 376 N PRO 46 -36.749 -23.292 24.128 1.00999.00 N ATOM 377 CA PRO 46 -35.745 -24.226 24.608 1.00999.00 C ATOM 378 CB PRO 46 -36.306 -24.806 25.899 1.00999.00 C ATOM 379 CG PRO 46 -37.185 -23.708 26.406 1.00999.00 C ATOM 380 CD PRO 46 -37.788 -22.992 25.188 1.00999.00 C ATOM 381 O PRO 46 -34.220 -25.796 23.639 1.00999.00 O ATOM 382 C PRO 46 -35.322 -25.250 23.571 1.00999.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 81.37 61.8 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 65.59 70.6 34 100.0 34 ARMSMC SURFACE . . . . . . . . 76.50 62.5 56 100.0 56 ARMSMC BURIED . . . . . . . . 101.01 58.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.16 56.2 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 73.64 51.7 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 77.27 52.9 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 76.25 48.1 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 10.30 100.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.67 48.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 57.59 47.6 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 66.75 53.8 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 61.40 50.0 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 63.62 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 41.45 87.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 44.15 85.7 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 82.11 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 41.45 87.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.57 66.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 70.57 66.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 88.87 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 70.57 66.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.23 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.23 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.1207 CRMSCA SECONDARY STRUCTURE . . 3.39 17 100.0 17 CRMSCA SURFACE . . . . . . . . 4.37 29 100.0 29 CRMSCA BURIED . . . . . . . . 3.47 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.30 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 3.47 85 100.0 85 CRMSMC SURFACE . . . . . . . . 4.38 143 100.0 143 CRMSMC BURIED . . . . . . . . 3.90 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.19 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 7.30 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 6.88 84 100.0 84 CRMSSC SURFACE . . . . . . . . 7.17 127 100.0 127 CRMSSC BURIED . . . . . . . . 7.26 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 5.96 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 5.55 152 100.0 152 CRMSALL SURFACE . . . . . . . . 5.97 243 100.0 243 CRMSALL BURIED . . . . . . . . 5.93 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 995.411 0.993 0.993 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 996.271 0.995 0.995 17 100.0 17 ERRCA SURFACE . . . . . . . . 995.287 0.993 0.993 29 100.0 29 ERRCA BURIED . . . . . . . . 996.012 0.994 0.994 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 995.338 0.993 0.993 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 996.201 0.994 0.994 85 100.0 85 ERRMC SURFACE . . . . . . . . 995.260 0.993 0.993 143 100.0 143 ERRMC BURIED . . . . . . . . 995.709 0.993 0.993 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 992.916 0.988 0.988 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 992.857 0.988 0.988 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 993.464 0.989 0.989 84 100.0 84 ERRSC SURFACE . . . . . . . . 992.987 0.988 0.988 127 100.0 127 ERRSC BURIED . . . . . . . . 992.608 0.987 0.987 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 994.109 0.990 0.990 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 994.763 0.992 0.992 152 100.0 152 ERRALL SURFACE . . . . . . . . 994.114 0.990 0.990 243 100.0 243 ERRALL BURIED . . . . . . . . 994.089 0.990 0.990 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 6 13 16 24 35 35 35 DISTCA CA (P) 17.14 37.14 45.71 68.57 100.00 35 DISTCA CA (RMS) 0.84 1.35 1.61 2.70 4.23 DISTCA ALL (N) 21 70 105 168 269 296 296 DISTALL ALL (P) 7.09 23.65 35.47 56.76 90.88 296 DISTALL ALL (RMS) 0.78 1.38 1.85 2.89 4.70 DISTALL END of the results output