####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS218_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS218_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 3.72 3.72 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 13 - 33 1.64 4.50 LONGEST_CONTINUOUS_SEGMENT: 21 14 - 34 1.94 4.20 LONGEST_CONTINUOUS_SEGMENT: 21 15 - 35 1.84 4.08 LCS_AVERAGE: 47.43 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 15 - 32 0.99 4.36 LONGEST_CONTINUOUS_SEGMENT: 18 16 - 33 0.82 4.49 LCS_AVERAGE: 34.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 4 35 3 3 4 4 4 5 6 6 6 6 18 22 23 25 28 35 35 35 35 35 LCS_GDT F 13 F 13 3 21 35 3 3 4 4 19 20 21 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT H 14 H 14 3 21 35 3 3 4 4 5 6 11 20 27 31 33 34 34 34 34 35 35 35 35 35 LCS_GDT Y 15 Y 15 18 21 35 3 4 15 17 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT T 16 T 16 18 21 35 8 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT V 17 V 17 18 21 35 9 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT T 18 T 18 18 21 35 10 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT D 19 D 19 18 21 35 10 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT I 20 I 20 18 21 35 10 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT K 21 K 21 18 21 35 10 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT D 22 D 22 18 21 35 10 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT L 23 L 23 18 21 35 10 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT T 24 T 24 18 21 35 10 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT K 25 K 25 18 21 35 10 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT L 26 L 26 18 21 35 7 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT G 27 G 27 18 21 35 7 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT A 28 A 28 18 21 35 7 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT I 29 I 29 18 21 35 3 10 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT Y 30 Y 30 18 21 35 10 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT D 31 D 31 18 21 35 10 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT K 32 K 32 18 21 35 3 10 18 18 19 20 25 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT T 33 T 33 18 21 35 3 9 18 18 19 20 25 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT K 34 K 34 6 21 35 3 5 7 9 13 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT K 35 K 35 6 21 35 3 5 6 8 14 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT Y 36 Y 36 6 9 35 4 5 7 9 13 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT W 37 W 37 6 9 35 4 5 7 9 13 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT V 38 V 38 6 9 35 4 5 7 9 13 18 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT Y 39 Y 39 6 9 35 4 5 7 9 10 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT Q 40 Q 40 5 9 35 4 5 7 9 10 10 15 24 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT G 41 G 41 5 9 35 4 5 7 9 10 10 15 24 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT K 42 K 42 5 9 35 4 5 7 9 13 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT P 43 P 43 5 9 35 3 3 5 7 18 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT V 44 V 44 4 9 35 3 5 6 9 10 11 22 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT M 45 M 45 4 9 35 0 3 4 11 13 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 LCS_GDT P 46 P 46 3 4 35 0 3 3 3 8 10 12 20 21 21 32 34 34 34 34 35 35 35 35 35 LCS_AVERAGE LCS_A: 60.52 ( 34.12 47.43 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 15 18 18 19 20 26 28 31 32 33 34 34 34 34 35 35 35 35 35 GDT PERCENT_AT 28.57 42.86 51.43 51.43 54.29 57.14 74.29 80.00 88.57 91.43 94.29 97.14 97.14 97.14 97.14 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.35 0.49 0.82 0.82 1.07 1.27 2.46 2.58 2.91 3.00 3.12 3.30 3.30 3.30 3.30 3.72 3.72 3.72 3.72 3.72 GDT RMS_ALL_AT 4.25 4.38 4.49 4.49 4.41 4.30 3.89 3.87 3.80 3.81 3.78 3.76 3.76 3.76 3.76 3.72 3.72 3.72 3.72 3.72 # Checking swapping # possible swapping detected: Y 15 Y 15 # possible swapping detected: Y 30 Y 30 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 11.653 0 0.364 1.132 17.033 0.714 0.286 LGA F 13 F 13 5.050 0 0.046 1.107 7.469 19.881 36.104 LGA H 14 H 14 6.008 0 0.623 1.020 12.348 24.048 10.476 LGA Y 15 Y 15 2.267 0 0.681 1.121 9.640 70.952 38.690 LGA T 16 T 16 0.129 0 0.228 1.179 2.820 92.976 84.626 LGA V 17 V 17 0.180 0 0.112 0.950 2.424 95.238 88.367 LGA T 18 T 18 0.721 0 0.048 0.139 1.292 90.595 90.544 LGA D 19 D 19 1.422 0 0.129 0.183 2.226 83.690 75.238 LGA I 20 I 20 0.797 0 0.045 0.057 0.994 90.476 90.476 LGA K 21 K 21 0.910 0 0.017 0.666 2.374 90.476 82.646 LGA D 22 D 22 1.467 0 0.032 0.129 1.839 77.143 75.000 LGA L 23 L 23 1.739 0 0.041 1.365 4.787 75.000 66.786 LGA T 24 T 24 1.363 0 0.014 1.126 3.382 79.286 74.490 LGA K 25 K 25 1.707 0 0.090 0.566 2.666 68.810 67.566 LGA L 26 L 26 2.631 0 0.124 1.356 6.074 60.952 50.655 LGA G 27 G 27 2.639 0 0.134 0.134 2.934 57.143 57.143 LGA A 28 A 28 2.537 0 0.087 0.111 2.624 62.857 61.714 LGA I 29 I 29 2.277 0 0.037 0.045 3.287 68.810 61.190 LGA Y 30 Y 30 1.472 0 0.089 1.270 7.241 69.048 51.190 LGA D 31 D 31 2.051 0 0.167 0.391 3.939 63.095 59.345 LGA K 32 K 32 3.130 0 0.566 0.901 5.083 49.048 45.450 LGA T 33 T 33 3.644 0 0.423 0.656 7.461 62.500 42.789 LGA K 34 K 34 3.641 0 0.329 0.653 8.780 45.000 28.201 LGA K 35 K 35 2.992 0 0.135 0.124 5.810 51.786 42.011 LGA Y 36 Y 36 3.739 0 0.117 1.149 7.015 46.667 38.333 LGA W 37 W 37 3.776 0 0.087 0.647 6.734 43.333 32.653 LGA V 38 V 38 3.936 0 0.038 0.176 4.617 41.786 38.980 LGA Y 39 Y 39 3.735 0 0.035 0.177 4.019 43.333 42.817 LGA Q 40 Q 40 5.365 0 0.196 0.840 8.093 23.095 19.788 LGA G 41 G 41 5.610 0 0.056 0.056 5.610 26.310 26.310 LGA K 42 K 42 3.875 0 0.574 1.160 6.186 42.024 31.693 LGA P 43 P 43 2.616 0 0.159 0.303 4.655 60.952 52.653 LGA V 44 V 44 4.937 0 0.645 1.025 9.863 43.929 26.599 LGA M 45 M 45 3.278 0 0.074 0.671 6.228 35.833 46.548 LGA P 46 P 46 7.523 0 0.115 0.126 8.351 10.833 12.517 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 3.723 3.620 4.659 56.218 49.996 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 28 2.58 68.571 65.679 1.044 LGA_LOCAL RMSD: 2.582 Number of atoms: 28 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.874 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 3.723 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.999487 * X + 0.009325 * Y + -0.030646 * Z + -26.247078 Y_new = -0.023688 * X + 0.428864 * Y + 0.903058 * Z + -41.369053 Z_new = 0.021564 * X + 0.903321 * Y + -0.428423 * Z + 38.228054 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.117897 -0.021566 2.013654 [DEG: -178.6423 -1.2356 115.3739 ] ZXZ: -3.107670 2.013543 0.023868 [DEG: -178.0564 115.3675 1.3675 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS218_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS218_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 28 2.58 65.679 3.72 REMARK ---------------------------------------------------------- MOLECULE T0548TS218_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 87 N HIS 12 -33.497 -21.514 32.075 1.00 0.00 N ATOM 88 CA HIS 12 -34.242 -20.450 31.415 1.00 0.00 C ATOM 89 C HIS 12 -35.642 -20.917 31.016 1.00 0.00 C ATOM 90 O HIS 12 -36.008 -21.051 29.845 1.00 0.00 O ATOM 91 CB HIS 12 -33.516 -19.993 30.148 1.00 0.00 C ATOM 92 CG HIS 12 -32.161 -19.410 30.405 1.00 0.00 C ATOM 93 ND1 HIS 12 -31.980 -18.186 31.011 1.00 0.00 N ATOM 94 CD2 HIS 12 -30.788 -19.827 30.160 1.00 0.00 C ATOM 95 CE1 HIS 12 -30.662 -17.934 31.103 1.00 0.00 C ATOM 96 NE2 HIS 12 -29.941 -18.915 30.595 1.00 0.00 N ATOM 97 N PHE 13 -36.437 -21.170 32.053 1.00 0.00 N ATOM 98 CA PHE 13 -37.845 -21.482 31.912 1.00 0.00 C ATOM 99 C PHE 13 -38.581 -20.292 32.509 1.00 0.00 C ATOM 100 O PHE 13 -38.229 -19.801 33.584 1.00 0.00 O ATOM 101 CB PHE 13 -38.186 -22.771 32.660 1.00 0.00 C ATOM 102 CG PHE 13 -37.559 -24.001 32.066 1.00 0.00 C ATOM 103 CD1 PHE 13 -36.318 -24.439 32.495 1.00 0.00 C ATOM 104 CD2 PHE 13 -38.210 -24.719 31.079 1.00 0.00 C ATOM 105 CE1 PHE 13 -35.742 -25.570 31.949 1.00 0.00 C ATOM 106 CE2 PHE 13 -37.633 -25.850 30.533 1.00 0.00 C ATOM 107 CZ PHE 13 -36.404 -26.276 30.963 1.00 0.00 C ATOM 108 N HIS 14 -39.608 -19.854 31.770 1.00 0.00 N ATOM 109 CA HIS 14 -40.351 -18.611 31.982 1.00 0.00 C ATOM 110 C HIS 14 -40.464 -18.025 33.380 1.00 0.00 C ATOM 111 O HIS 14 -40.297 -16.810 33.548 1.00 0.00 O ATOM 112 CB HIS 14 -41.809 -18.778 31.549 1.00 0.00 C ATOM 113 CG HIS 14 -41.981 -18.996 30.078 1.00 0.00 C ATOM 114 ND1 HIS 14 -41.783 -17.998 29.149 1.00 0.00 N ATOM 115 CD2 HIS 14 -42.350 -20.122 29.231 1.00 0.00 C ATOM 116 CE1 HIS 14 -42.011 -18.493 27.919 1.00 0.00 C ATOM 117 NE2 HIS 14 -42.351 -19.766 27.961 1.00 0.00 N ATOM 118 N TYR 15 -40.743 -18.864 34.384 1.00 0.00 N ATOM 119 CA TYR 15 -40.972 -18.437 35.760 1.00 0.00 C ATOM 120 C TYR 15 -39.867 -17.595 36.408 1.00 0.00 C ATOM 121 O TYR 15 -40.077 -16.985 37.454 1.00 0.00 O ATOM 122 CB TYR 15 -41.144 -19.650 36.675 1.00 0.00 C ATOM 123 CG TYR 15 -39.883 -20.466 36.855 1.00 0.00 C ATOM 124 CD1 TYR 15 -38.937 -20.113 37.809 1.00 0.00 C ATOM 125 CD2 TYR 15 -39.643 -21.586 36.069 1.00 0.00 C ATOM 126 CE1 TYR 15 -37.781 -20.852 37.979 1.00 0.00 C ATOM 127 CE2 TYR 15 -38.493 -22.336 36.225 1.00 0.00 C ATOM 128 CZ TYR 15 -37.560 -21.960 37.190 1.00 0.00 C ATOM 129 OH TYR 15 -36.411 -22.699 37.358 1.00 0.00 H ATOM 130 N THR 16 -38.675 -17.546 35.802 1.00 0.00 N ATOM 131 CA THR 16 -37.644 -16.597 36.196 1.00 0.00 C ATOM 132 C THR 16 -38.026 -15.173 35.779 1.00 0.00 C ATOM 133 O THR 16 -38.147 -14.846 34.596 1.00 0.00 O ATOM 134 CB THR 16 -36.290 -16.931 35.541 1.00 0.00 C ATOM 135 OG1 THR 16 -35.888 -18.255 35.915 1.00 0.00 O ATOM 136 CG2 THR 16 -35.223 -15.946 35.993 1.00 0.00 C ATOM 137 N VAL 17 -38.218 -14.324 36.797 1.00 0.00 N ATOM 138 CA VAL 17 -38.698 -12.946 36.668 1.00 0.00 C ATOM 139 C VAL 17 -38.089 -12.072 35.562 1.00 0.00 C ATOM 140 O VAL 17 -38.775 -11.223 34.985 1.00 0.00 O ATOM 141 CB VAL 17 -38.450 -12.138 37.955 1.00 0.00 C ATOM 142 CG1 VAL 17 -36.959 -11.925 38.171 1.00 0.00 C ATOM 143 CG2 VAL 17 -39.122 -10.777 37.869 1.00 0.00 C ATOM 144 N THR 18 -36.800 -12.267 35.257 1.00 0.00 N ATOM 145 CA THR 18 -36.121 -11.534 34.191 1.00 0.00 C ATOM 146 C THR 18 -36.731 -11.837 32.816 1.00 0.00 C ATOM 147 O THR 18 -36.896 -10.944 31.982 1.00 0.00 O ATOM 148 CB THR 18 -34.626 -11.899 34.118 1.00 0.00 C ATOM 149 OG1 THR 18 -33.985 -11.543 35.349 1.00 0.00 O ATOM 150 CG2 THR 18 -33.951 -11.154 32.977 1.00 0.00 C ATOM 151 N ASP 19 -37.076 -13.104 32.557 1.00 0.00 N ATOM 152 CA ASP 19 -37.582 -13.482 31.246 1.00 0.00 C ATOM 153 C ASP 19 -39.065 -13.196 31.059 1.00 0.00 C ATOM 154 O ASP 19 -39.480 -12.980 29.916 1.00 0.00 O ATOM 155 CB ASP 19 -37.388 -14.982 31.008 1.00 0.00 C ATOM 156 CG ASP 19 -35.926 -15.375 30.938 1.00 0.00 C ATOM 157 OD1 ASP 19 -35.181 -14.755 30.149 1.00 0.00 O ATOM 158 OD2 ASP 19 -35.524 -16.304 31.670 1.00 0.00 O ATOM 159 N ILE 20 -39.878 -13.185 32.128 1.00 0.00 N ATOM 160 CA ILE 20 -41.277 -12.747 32.049 1.00 0.00 C ATOM 161 C ILE 20 -41.361 -11.349 31.434 1.00 0.00 C ATOM 162 O ILE 20 -42.137 -11.103 30.512 1.00 0.00 O ATOM 163 CB ILE 20 -41.933 -12.696 33.442 1.00 0.00 C ATOM 164 CG1 ILE 20 -42.082 -14.108 34.013 1.00 0.00 C ATOM 165 CG2 ILE 20 -43.311 -12.060 33.358 1.00 0.00 C ATOM 166 CD1 ILE 20 -42.461 -14.136 35.477 1.00 0.00 C ATOM 167 N LYS 21 -40.539 -10.439 31.972 1.00 0.00 N ATOM 168 CA LYS 21 -40.457 -9.072 31.481 1.00 0.00 C ATOM 169 C LYS 21 -39.948 -9.001 30.043 1.00 0.00 C ATOM 170 O LYS 21 -40.567 -8.333 29.207 1.00 0.00 O ATOM 171 CB LYS 21 -39.501 -8.249 32.347 1.00 0.00 C ATOM 172 CG LYS 21 -39.386 -6.792 31.931 1.00 0.00 C ATOM 173 CD LYS 21 -38.478 -6.018 32.874 1.00 0.00 C ATOM 174 CE LYS 21 -38.323 -4.573 32.428 1.00 0.00 C ATOM 175 NZ LYS 21 -37.417 -3.808 33.330 1.00 0.00 N ATOM 176 N ASP 22 -38.832 -9.671 29.717 1.00 0.00 N ATOM 177 CA ASP 22 -38.288 -9.651 28.361 1.00 0.00 C ATOM 178 C ASP 22 -39.232 -10.214 27.298 1.00 0.00 C ATOM 179 O ASP 22 -39.310 -9.683 26.189 1.00 0.00 O ATOM 180 CB ASP 22 -37.006 -10.480 28.285 1.00 0.00 C ATOM 181 CG ASP 22 -35.832 -9.803 28.965 1.00 0.00 C ATOM 182 OD1 ASP 22 -35.944 -8.601 29.285 1.00 0.00 O ATOM 183 OD2 ASP 22 -34.800 -10.474 29.178 1.00 0.00 O ATOM 184 N LEU 23 -39.953 -11.289 27.628 1.00 0.00 N ATOM 185 CA LEU 23 -40.899 -11.910 26.711 1.00 0.00 C ATOM 186 C LEU 23 -42.144 -11.052 26.475 1.00 0.00 C ATOM 187 O LEU 23 -42.609 -10.949 25.341 1.00 0.00 O ATOM 188 CB LEU 23 -41.372 -13.256 27.262 1.00 0.00 C ATOM 189 CG LEU 23 -42.353 -14.040 26.387 1.00 0.00 C ATOM 190 CD1 LEU 23 -41.726 -14.371 25.042 1.00 0.00 C ATOM 191 CD2 LEU 23 -42.750 -15.345 27.061 1.00 0.00 C ATOM 192 N THR 24 -42.709 -10.424 27.519 1.00 0.00 N ATOM 193 CA THR 24 -43.826 -9.500 27.329 1.00 0.00 C ATOM 194 C THR 24 -43.388 -8.249 26.557 1.00 0.00 C ATOM 195 O THR 24 -44.140 -7.753 25.711 1.00 0.00 O ATOM 196 CB THR 24 -44.407 -9.032 28.676 1.00 0.00 C ATOM 197 OG1 THR 24 -44.913 -10.161 29.399 1.00 0.00 O ATOM 198 CG2 THR 24 -45.540 -8.043 28.452 1.00 0.00 C ATOM 199 N LYS 25 -42.183 -7.722 26.827 1.00 0.00 N ATOM 200 CA LYS 25 -41.618 -6.590 26.094 1.00 0.00 C ATOM 201 C LYS 25 -41.452 -6.872 24.599 1.00 0.00 C ATOM 202 O LYS 25 -41.706 -5.999 23.766 1.00 0.00 O ATOM 203 CB LYS 25 -40.235 -6.233 26.643 1.00 0.00 C ATOM 204 CG LYS 25 -39.591 -5.033 25.968 1.00 0.00 C ATOM 205 CD LYS 25 -38.259 -4.687 26.612 1.00 0.00 C ATOM 206 CE LYS 25 -37.600 -3.505 25.918 1.00 0.00 C ATOM 207 NZ LYS 25 -36.286 -3.163 26.531 1.00 0.00 N ATOM 208 N LEU 26 -41.026 -8.088 24.234 1.00 0.00 N ATOM 209 CA LEU 26 -40.949 -8.485 22.833 1.00 0.00 C ATOM 210 C LEU 26 -42.284 -8.845 22.175 1.00 0.00 C ATOM 211 O LEU 26 -42.319 -9.226 21.005 1.00 0.00 O ATOM 212 CB LEU 26 -40.060 -9.721 22.674 1.00 0.00 C ATOM 213 CG LEU 26 -38.591 -9.555 23.066 1.00 0.00 C ATOM 214 CD1 LEU 26 -37.853 -10.881 22.963 1.00 0.00 C ATOM 215 CD2 LEU 26 -37.901 -8.554 22.152 1.00 0.00 C ATOM 216 N GLY 27 -43.401 -8.733 22.904 1.00 0.00 N ATOM 217 CA GLY 27 -44.731 -8.915 22.340 1.00 0.00 C ATOM 218 C GLY 27 -45.207 -10.361 22.313 1.00 0.00 C ATOM 219 O GLY 27 -45.734 -10.825 21.300 1.00 0.00 O ATOM 220 N ALA 28 -45.031 -11.097 23.414 1.00 0.00 N ATOM 221 CA ALA 28 -45.494 -12.475 23.506 1.00 0.00 C ATOM 222 C ALA 28 -46.193 -12.760 24.836 1.00 0.00 C ATOM 223 O ALA 28 -46.342 -11.858 25.662 1.00 0.00 O ATOM 224 CB ALA 28 -44.322 -13.437 23.386 1.00 0.00 C ATOM 225 N ILE 29 -46.635 -14.002 25.082 1.00 0.00 N ATOM 226 CA ILE 29 -47.595 -14.288 26.142 1.00 0.00 C ATOM 227 C ILE 29 -47.408 -15.688 26.737 1.00 0.00 C ATOM 228 O ILE 29 -46.823 -16.586 26.125 1.00 0.00 O ATOM 229 CB ILE 29 -49.045 -14.210 25.628 1.00 0.00 C ATOM 230 CG1 ILE 29 -49.257 -15.200 24.481 1.00 0.00 C ATOM 231 CG2 ILE 29 -49.355 -12.811 25.120 1.00 0.00 C ATOM 232 CD1 ILE 29 -50.699 -15.327 24.043 1.00 0.00 C ATOM 233 N TYR 30 -47.929 -15.846 27.958 1.00 0.00 N ATOM 234 CA TYR 30 -48.179 -17.136 28.583 1.00 0.00 C ATOM 235 C TYR 30 -49.239 -17.981 27.880 1.00 0.00 C ATOM 236 O TYR 30 -50.183 -17.449 27.292 1.00 0.00 O ATOM 237 CB TYR 30 -48.662 -16.949 30.023 1.00 0.00 C ATOM 238 CG TYR 30 -47.586 -16.472 30.973 1.00 0.00 C ATOM 239 CD1 TYR 30 -47.517 -15.138 31.358 1.00 0.00 C ATOM 240 CD2 TYR 30 -46.642 -17.355 31.480 1.00 0.00 C ATOM 241 CE1 TYR 30 -46.538 -14.694 32.225 1.00 0.00 C ATOM 242 CE2 TYR 30 -45.655 -16.927 32.348 1.00 0.00 C ATOM 243 CZ TYR 30 -45.610 -15.584 32.719 1.00 0.00 C ATOM 244 OH TYR 30 -44.634 -15.144 33.582 1.00 0.00 H ATOM 245 N ASP 31 -49.102 -19.306 27.928 1.00 0.00 N ATOM 246 CA ASP 31 -50.260 -20.184 27.839 1.00 0.00 C ATOM 247 C ASP 31 -49.980 -21.407 28.698 1.00 0.00 C ATOM 248 O ASP 31 -48.888 -21.975 28.654 1.00 0.00 O ATOM 249 CB ASP 31 -50.500 -20.610 26.389 1.00 0.00 C ATOM 250 CG ASP 31 -51.881 -21.194 26.173 1.00 0.00 C ATOM 251 OD1 ASP 31 -52.194 -22.228 26.800 1.00 0.00 O ATOM 252 OD2 ASP 31 -52.652 -20.617 25.378 1.00 0.00 O ATOM 253 N LYS 32 -50.977 -21.809 29.484 1.00 0.00 N ATOM 254 CA LYS 32 -50.803 -22.854 30.483 1.00 0.00 C ATOM 255 C LYS 32 -51.508 -24.137 30.065 1.00 0.00 C ATOM 256 O LYS 32 -52.631 -24.100 29.555 1.00 0.00 O ATOM 257 CB LYS 32 -51.382 -22.410 31.828 1.00 0.00 C ATOM 258 CG LYS 32 -50.643 -21.248 32.468 1.00 0.00 C ATOM 259 CD LYS 32 -51.259 -20.871 33.806 1.00 0.00 C ATOM 260 CE LYS 32 -50.534 -19.693 34.437 1.00 0.00 C ATOM 261 NZ LYS 32 -51.155 -19.285 35.727 1.00 0.00 N ATOM 262 N THR 33 -50.855 -25.281 30.280 1.00 0.00 N ATOM 263 CA THR 33 -51.456 -26.581 30.009 1.00 0.00 C ATOM 264 C THR 33 -51.594 -27.399 31.305 1.00 0.00 C ATOM 265 O THR 33 -52.397 -27.032 32.165 1.00 0.00 O ATOM 266 CB THR 33 -50.602 -27.402 29.025 1.00 0.00 C ATOM 267 OG1 THR 33 -49.281 -27.566 29.555 1.00 0.00 O ATOM 268 CG2 THR 33 -50.510 -26.695 27.681 1.00 0.00 C ATOM 269 N LYS 34 -50.852 -28.502 31.504 1.00 0.00 N ATOM 270 CA LYS 34 -50.791 -29.295 32.737 1.00 0.00 C ATOM 271 C LYS 34 -50.076 -28.529 33.871 1.00 0.00 C ATOM 272 O LYS 34 -49.130 -29.017 34.489 1.00 0.00 O ATOM 273 CB LYS 34 -50.027 -30.599 32.498 1.00 0.00 C ATOM 274 CG LYS 34 -50.727 -31.565 31.556 1.00 0.00 C ATOM 275 CD LYS 34 -49.937 -32.855 31.400 1.00 0.00 C ATOM 276 CE LYS 34 -50.623 -33.810 30.437 1.00 0.00 C ATOM 277 NZ LYS 34 -49.845 -35.066 30.253 1.00 0.00 N ATOM 278 N LYS 35 -50.507 -27.294 34.187 1.00 0.00 N ATOM 279 CA LYS 35 -49.776 -26.346 35.038 1.00 0.00 C ATOM 280 C LYS 35 -48.348 -26.060 34.526 1.00 0.00 C ATOM 281 O LYS 35 -47.460 -25.573 35.226 1.00 0.00 O ATOM 282 CB LYS 35 -49.645 -26.894 36.461 1.00 0.00 C ATOM 283 CG LYS 35 -50.972 -27.075 37.180 1.00 0.00 C ATOM 284 CD LYS 35 -50.768 -27.611 38.588 1.00 0.00 C ATOM 285 CE LYS 35 -52.096 -27.909 39.264 1.00 0.00 C ATOM 286 NZ LYS 35 -51.911 -28.482 40.625 1.00 0.00 N ATOM 287 N TYR 36 -48.114 -26.377 33.247 1.00 0.00 N ATOM 288 CA TYR 36 -46.836 -26.169 32.599 1.00 0.00 C ATOM 289 C TYR 36 -47.047 -25.076 31.566 1.00 0.00 C ATOM 290 O TYR 36 -47.962 -25.136 30.739 1.00 0.00 O ATOM 291 CB TYR 36 -46.362 -27.458 31.924 1.00 0.00 C ATOM 292 CG TYR 36 -45.062 -27.309 31.165 1.00 0.00 C ATOM 293 CD1 TYR 36 -43.848 -27.262 31.837 1.00 0.00 C ATOM 294 CD2 TYR 36 -45.055 -27.216 29.780 1.00 0.00 C ATOM 295 CE1 TYR 36 -42.655 -27.127 31.152 1.00 0.00 C ATOM 296 CE2 TYR 36 -43.872 -27.079 29.077 1.00 0.00 C ATOM 297 CZ TYR 36 -42.667 -27.035 29.777 1.00 0.00 C ATOM 298 OH TYR 36 -41.481 -26.900 29.092 1.00 0.00 H ATOM 299 N TRP 37 -46.157 -24.085 31.664 1.00 0.00 N ATOM 300 CA TRP 37 -46.095 -22.983 30.719 1.00 0.00 C ATOM 301 C TRP 37 -45.567 -23.501 29.390 1.00 0.00 C ATOM 302 O TRP 37 -44.529 -24.175 29.328 1.00 0.00 O ATOM 303 CB TRP 37 -45.164 -21.885 31.238 1.00 0.00 C ATOM 304 CG TRP 37 -45.688 -21.175 32.448 1.00 0.00 C ATOM 305 CD1 TRP 37 -46.880 -21.398 33.077 1.00 0.00 C ATOM 306 CD2 TRP 37 -45.039 -20.128 33.177 1.00 0.00 C ATOM 307 NE1 TRP 37 -47.014 -20.555 34.152 1.00 0.00 N ATOM 308 CE2 TRP 37 -45.895 -19.763 34.235 1.00 0.00 C ATOM 309 CE3 TRP 37 -43.818 -19.461 33.040 1.00 0.00 C ATOM 310 CZ2 TRP 37 -45.569 -18.763 35.150 1.00 0.00 C ATOM 311 CZ3 TRP 37 -43.499 -18.469 33.948 1.00 0.00 C ATOM 312 CH2 TRP 37 -44.368 -18.129 34.990 1.00 0.00 H ATOM 313 N VAL 38 -46.293 -23.176 28.324 1.00 0.00 N ATOM 314 CA VAL 38 -45.958 -23.608 26.978 1.00 0.00 C ATOM 315 C VAL 38 -45.907 -22.351 26.105 1.00 0.00 C ATOM 316 O VAL 38 -46.817 -21.520 26.165 1.00 0.00 O ATOM 317 CB VAL 38 -47.008 -24.586 26.422 1.00 0.00 C ATOM 318 CG1 VAL 38 -46.654 -24.997 25.000 1.00 0.00 C ATOM 319 CG2 VAL 38 -47.077 -25.840 27.281 1.00 0.00 C ATOM 320 N TYR 39 -44.860 -22.176 25.283 1.00 0.00 N ATOM 321 CA TYR 39 -44.704 -20.979 24.455 1.00 0.00 C ATOM 322 C TYR 39 -45.816 -20.947 23.409 1.00 0.00 C ATOM 323 O TYR 39 -46.012 -21.904 22.650 1.00 0.00 O ATOM 324 CB TYR 39 -43.348 -20.992 23.745 1.00 0.00 C ATOM 325 CG TYR 39 -43.109 -19.790 22.859 1.00 0.00 C ATOM 326 CD1 TYR 39 -42.804 -18.551 23.408 1.00 0.00 C ATOM 327 CD2 TYR 39 -43.190 -19.899 21.477 1.00 0.00 C ATOM 328 CE1 TYR 39 -42.584 -17.448 22.605 1.00 0.00 C ATOM 329 CE2 TYR 39 -42.973 -18.806 20.659 1.00 0.00 C ATOM 330 CZ TYR 39 -42.668 -17.574 21.236 1.00 0.00 C ATOM 331 OH TYR 39 -42.449 -16.478 20.435 1.00 0.00 H ATOM 332 N GLN 40 -46.561 -19.835 23.361 1.00 0.00 N ATOM 333 CA GLN 40 -47.709 -19.650 22.469 1.00 0.00 C ATOM 334 C GLN 40 -48.830 -20.692 22.569 1.00 0.00 C ATOM 335 O GLN 40 -49.790 -20.647 21.797 1.00 0.00 O ATOM 336 CB GLN 40 -47.262 -19.681 21.007 1.00 0.00 C ATOM 337 CG GLN 40 -46.256 -18.601 20.642 1.00 0.00 C ATOM 338 CD GLN 40 -46.799 -17.202 20.858 1.00 0.00 C ATOM 339 OE1 GLN 40 -47.905 -16.882 20.424 1.00 0.00 O ATOM 340 NE2 GLN 40 -46.020 -16.364 21.530 1.00 0.00 N ATOM 341 N GLY 41 -48.748 -21.646 23.505 1.00 0.00 N ATOM 342 CA GLY 41 -49.703 -22.740 23.581 1.00 0.00 C ATOM 343 C GLY 41 -49.306 -24.005 22.834 1.00 0.00 C ATOM 344 O GLY 41 -50.075 -24.966 22.862 1.00 0.00 O ATOM 345 N LYS 42 -48.150 -24.070 22.160 1.00 0.00 N ATOM 346 CA LYS 42 -47.759 -25.274 21.427 1.00 0.00 C ATOM 347 C LYS 42 -46.310 -25.716 21.679 1.00 0.00 C ATOM 348 O LYS 42 -46.130 -26.871 22.069 1.00 0.00 O ATOM 349 CB LYS 42 -47.891 -25.049 19.919 1.00 0.00 C ATOM 350 CG LYS 42 -47.581 -26.279 19.079 1.00 0.00 C ATOM 351 CD LYS 42 -47.824 -26.013 17.603 1.00 0.00 C ATOM 352 CE LYS 42 -47.574 -27.259 16.769 1.00 0.00 C ATOM 353 NZ LYS 42 -47.941 -27.055 15.341 1.00 0.00 N ATOM 354 N PRO 43 -45.232 -24.925 21.502 1.00 0.00 N ATOM 355 CA PRO 43 -43.879 -25.279 21.933 1.00 0.00 C ATOM 356 C PRO 43 -43.477 -25.433 23.389 1.00 0.00 C ATOM 357 O PRO 43 -43.885 -24.711 24.299 1.00 0.00 O ATOM 358 CB PRO 43 -43.007 -24.150 21.379 1.00 0.00 C ATOM 359 CG PRO 43 -43.935 -22.990 21.250 1.00 0.00 C ATOM 360 CD PRO 43 -45.279 -23.567 20.906 1.00 0.00 C ATOM 361 N VAL 44 -42.630 -26.450 23.536 1.00 0.00 N ATOM 362 CA VAL 44 -41.823 -26.665 24.729 1.00 0.00 C ATOM 363 C VAL 44 -40.761 -25.590 24.959 1.00 0.00 C ATOM 364 O VAL 44 -40.372 -25.328 26.097 1.00 0.00 O ATOM 365 CB VAL 44 -41.068 -28.006 24.666 1.00 0.00 C ATOM 366 CG1 VAL 44 -42.045 -29.161 24.514 1.00 0.00 C ATOM 367 CG2 VAL 44 -40.114 -28.024 23.482 1.00 0.00 C ATOM 368 N MET 45 -40.274 -24.950 23.888 1.00 0.00 N ATOM 369 CA MET 45 -39.132 -24.056 23.965 1.00 0.00 C ATOM 370 C MET 45 -39.272 -22.918 22.956 1.00 0.00 C ATOM 371 O MET 45 -39.691 -23.171 21.825 1.00 0.00 O ATOM 372 CB MET 45 -37.837 -24.813 23.663 1.00 0.00 C ATOM 373 CG MET 45 -36.593 -23.941 23.663 1.00 0.00 C ATOM 374 SD MET 45 -36.196 -23.295 25.299 1.00 0.00 S ATOM 375 CE MET 45 -35.471 -24.741 26.066 1.00 0.00 C ATOM 376 N PRO 46 -38.940 -21.663 23.308 1.00 0.00 N ATOM 377 CA PRO 46 -38.895 -20.526 22.389 1.00 0.00 C ATOM 378 C PRO 46 -37.905 -20.669 21.237 1.00 0.00 C ATOM 379 O PRO 46 -36.788 -21.169 21.392 1.00 0.00 O ATOM 380 CB PRO 46 -38.488 -19.348 23.277 1.00 0.00 C ATOM 381 CG PRO 46 -38.930 -19.743 24.647 1.00 0.00 C ATOM 382 CD PRO 46 -38.695 -21.225 24.749 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 54.67 66.2 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 23.99 82.4 34 100.0 34 ARMSMC SURFACE . . . . . . . . 50.77 66.1 56 100.0 56 ARMSMC BURIED . . . . . . . . 70.06 66.7 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.88 50.0 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 72.97 51.7 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 67.50 58.8 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 71.42 51.9 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 91.34 40.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.75 44.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 55.47 47.6 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 53.50 61.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 61.82 50.0 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 89.43 0.0 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.43 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 67.76 71.4 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 80.74 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 64.43 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 52.46 83.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 52.46 83.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 90.77 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 52.46 83.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.72 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.72 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.1064 CRMSCA SECONDARY STRUCTURE . . 2.50 17 100.0 17 CRMSCA SURFACE . . . . . . . . 3.74 29 100.0 29 CRMSCA BURIED . . . . . . . . 3.62 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.78 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 2.56 85 100.0 85 CRMSMC SURFACE . . . . . . . . 3.82 143 100.0 143 CRMSMC BURIED . . . . . . . . 3.59 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.45 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 4.63 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 3.66 84 100.0 84 CRMSSC SURFACE . . . . . . . . 5.35 127 100.0 127 CRMSSC BURIED . . . . . . . . 5.88 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.68 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 3.20 152 100.0 152 CRMSALL SURFACE . . . . . . . . 4.63 243 100.0 243 CRMSALL BURIED . . . . . . . . 4.88 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.228 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 2.222 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 3.184 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 3.439 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.263 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 2.276 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 3.247 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 3.338 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.594 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 4.069 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 3.267 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 4.406 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 5.417 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.923 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 2.814 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 3.821 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 4.391 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 3 10 17 31 34 35 35 DISTCA CA (P) 8.57 28.57 48.57 88.57 97.14 35 DISTCA CA (RMS) 0.70 1.39 2.01 3.00 3.34 DISTCA ALL (N) 19 67 113 235 283 296 296 DISTALL ALL (P) 6.42 22.64 38.18 79.39 95.61 296 DISTALL ALL (RMS) 0.69 1.41 1.94 3.19 3.99 DISTALL END of the results output