####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 362), selected 35 , name T0548TS215_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS215_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 18 - 43 4.92 7.25 LONGEST_CONTINUOUS_SEGMENT: 26 19 - 44 4.87 7.28 LCS_AVERAGE: 69.39 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 12 - 18 0.81 11.85 LCS_AVERAGE: 16.90 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 12 - 18 0.81 11.85 LCS_AVERAGE: 14.53 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 7 7 19 3 6 7 7 7 8 10 12 13 14 17 19 22 26 29 29 31 32 32 32 LCS_GDT F 13 F 13 7 7 20 3 6 7 7 7 8 10 12 15 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT H 14 H 14 7 7 20 3 6 7 7 7 8 10 12 16 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT Y 15 Y 15 7 7 20 4 5 7 7 7 8 10 13 15 18 22 25 28 28 29 30 31 32 32 32 LCS_GDT T 16 T 16 7 7 20 4 6 7 7 7 8 10 13 15 17 19 25 28 28 29 30 31 32 32 32 LCS_GDT V 17 V 17 7 7 20 4 6 7 7 7 8 10 12 13 15 17 19 23 26 28 30 31 32 32 32 LCS_GDT T 18 T 18 7 7 26 4 6 7 7 7 8 9 11 12 13 17 18 22 26 27 28 31 32 32 32 LCS_GDT D 19 D 19 3 5 26 3 3 4 4 4 6 8 12 14 15 18 19 23 27 29 30 31 32 32 32 LCS_GDT I 20 I 20 3 5 26 3 3 4 5 7 11 12 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT K 21 K 21 3 5 26 3 3 4 5 6 8 11 13 16 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT D 22 D 22 3 5 26 3 3 4 4 7 11 12 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT L 23 L 23 4 5 26 3 3 4 5 7 11 12 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT T 24 T 24 4 5 26 3 3 4 4 6 6 10 11 14 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT K 25 K 25 4 5 26 3 3 4 5 7 11 12 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT L 26 L 26 4 5 26 3 3 4 5 6 8 10 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT G 27 G 27 4 5 26 3 4 5 5 7 11 12 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT A 28 A 28 4 5 26 3 4 5 5 6 11 12 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT I 29 I 29 5 6 26 4 5 5 5 7 11 12 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT Y 30 Y 30 5 6 26 4 5 5 5 7 11 12 13 15 17 20 25 28 28 29 30 31 32 32 32 LCS_GDT D 31 D 31 5 6 26 4 5 5 5 5 8 12 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT K 32 K 32 5 6 26 4 5 5 5 6 8 11 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT T 33 T 33 5 6 26 3 5 5 5 6 7 10 13 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT K 34 K 34 4 6 26 3 4 4 5 6 8 10 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT K 35 K 35 5 6 26 4 4 5 5 6 7 10 12 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT Y 36 Y 36 5 6 26 4 4 5 5 6 8 10 12 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT W 37 W 37 5 6 26 4 4 5 5 6 7 9 12 14 18 22 25 28 28 29 30 31 32 32 32 LCS_GDT V 38 V 38 5 6 26 4 4 5 5 6 7 9 11 14 16 19 24 28 28 29 30 31 32 32 32 LCS_GDT Y 39 Y 39 5 6 26 3 4 5 5 6 7 9 11 13 16 21 25 28 28 29 30 31 32 32 32 LCS_GDT Q 40 Q 40 3 6 26 3 3 4 5 7 11 12 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT G 41 G 41 6 6 26 3 5 6 6 6 8 10 13 16 19 22 25 28 28 29 30 31 32 32 32 LCS_GDT K 42 K 42 6 6 26 3 5 6 6 7 11 12 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT P 43 P 43 6 6 26 4 5 6 6 7 11 12 14 17 20 22 25 28 28 29 30 31 32 32 32 LCS_GDT V 44 V 44 6 6 26 4 5 6 6 6 6 7 9 10 13 16 18 22 24 27 30 31 32 32 32 LCS_GDT M 45 M 45 6 6 15 4 5 6 6 6 6 7 9 10 10 12 17 20 21 21 22 23 25 29 30 LCS_GDT P 46 P 46 6 6 14 4 5 6 6 6 6 7 7 10 10 11 12 13 13 15 17 20 22 25 26 LCS_AVERAGE LCS_A: 33.61 ( 14.53 16.90 69.39 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 6 7 7 7 11 12 14 17 20 22 25 28 28 29 30 31 32 32 32 GDT PERCENT_AT 11.43 17.14 20.00 20.00 20.00 31.43 34.29 40.00 48.57 57.14 62.86 71.43 80.00 80.00 82.86 85.71 88.57 91.43 91.43 91.43 GDT RMS_LOCAL 0.26 0.54 0.81 0.81 0.81 2.27 2.45 3.11 3.62 3.93 4.12 4.42 4.73 4.73 4.94 5.16 5.35 5.55 5.55 5.55 GDT RMS_ALL_AT 19.67 11.53 11.85 11.85 11.85 8.33 8.24 7.66 7.47 7.31 7.46 7.28 7.13 7.13 7.27 6.97 7.09 6.87 6.87 7.04 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 36 Y 36 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 14.764 0 0.598 1.451 22.365 0.000 0.000 LGA F 13 F 13 10.602 0 0.035 0.368 11.969 0.000 0.476 LGA H 14 H 14 9.492 0 0.127 1.240 15.116 1.905 0.810 LGA Y 15 Y 15 8.808 0 0.092 0.531 10.539 2.500 0.913 LGA T 16 T 16 9.011 0 0.046 1.040 9.873 1.310 3.469 LGA V 17 V 17 11.436 0 0.631 0.685 14.009 0.119 0.068 LGA T 18 T 18 10.832 0 0.569 0.503 13.680 0.119 0.068 LGA D 19 D 19 7.029 0 0.541 1.245 7.638 18.690 16.964 LGA I 20 I 20 1.624 0 0.630 0.595 4.974 51.190 54.762 LGA K 21 K 21 5.394 0 0.553 1.149 14.873 34.762 16.614 LGA D 22 D 22 3.465 0 0.476 0.903 3.943 46.667 54.881 LGA L 23 L 23 2.310 0 0.592 0.702 4.690 51.071 58.988 LGA T 24 T 24 6.215 0 0.046 1.116 10.248 29.286 17.823 LGA K 25 K 25 1.778 0 0.678 1.099 8.046 65.357 41.746 LGA L 26 L 26 3.908 0 0.661 1.470 10.261 57.500 31.548 LGA G 27 G 27 2.675 0 0.675 0.675 2.675 69.048 69.048 LGA A 28 A 28 3.047 0 0.075 0.097 4.495 57.262 53.238 LGA I 29 I 29 3.690 0 0.578 1.506 6.971 37.976 32.083 LGA Y 30 Y 30 4.819 0 0.090 1.286 15.735 45.714 16.706 LGA D 31 D 31 3.420 0 0.105 1.103 8.761 50.119 30.595 LGA K 32 K 32 3.778 0 0.544 0.971 11.398 39.167 20.741 LGA T 33 T 33 5.177 0 0.130 0.695 7.896 27.262 22.721 LGA K 34 K 34 4.701 0 0.679 0.876 11.162 37.262 23.386 LGA K 35 K 35 6.748 0 0.694 0.706 17.407 15.357 7.619 LGA Y 36 Y 36 6.907 0 0.122 1.314 11.001 10.952 7.500 LGA W 37 W 37 8.014 0 0.073 0.283 8.348 5.952 5.272 LGA V 38 V 38 8.209 0 0.178 1.249 8.327 5.357 6.190 LGA Y 39 Y 39 7.313 0 0.572 1.434 9.156 20.119 10.397 LGA Q 40 Q 40 2.494 0 0.419 0.589 7.111 50.833 39.312 LGA G 41 G 41 4.583 0 0.605 0.605 4.583 45.476 45.476 LGA K 42 K 42 1.520 0 0.078 0.844 3.302 68.929 60.794 LGA P 43 P 43 3.247 0 0.092 0.135 6.571 36.667 32.993 LGA V 44 V 44 9.010 0 0.041 0.065 12.715 4.762 2.857 LGA M 45 M 45 14.466 0 0.191 1.283 19.103 0.000 0.000 LGA P 46 P 46 18.278 0 0.066 0.126 21.221 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 6.822 6.756 8.115 28.248 22.459 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 14 3.11 40.714 35.866 0.436 LGA_LOCAL RMSD: 3.112 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.661 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 6.822 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.850631 * X + 0.466336 * Y + -0.242811 * Z + -128.652527 Y_new = 0.180249 * X + -0.175175 * Y + -0.967897 * Z + -69.090393 Z_new = -0.493899 * X + -0.867090 * Y + 0.064953 * Z + 16.257330 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.932781 0.516568 -1.496027 [DEG: 168.0360 29.5972 -85.7160 ] ZXZ: -0.245792 1.505798 -2.623822 [DEG: -14.0829 86.2759 -150.3339 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS215_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS215_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 14 3.11 35.866 6.82 REMARK ---------------------------------------------------------- MOLECULE T0548TS215_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3L2QA ATOM 106 N HIS 12 -33.461 -29.747 22.489 1.00 50.00 N ATOM 107 CA HIS 12 -32.745 -28.612 22.000 1.00 50.00 C ATOM 108 C HIS 12 -33.242 -27.403 22.716 1.00 50.00 C ATOM 109 O HIS 12 -32.472 -26.503 23.045 1.00 50.00 O ATOM 110 H HIS 12 -34.060 -30.163 21.961 1.00 50.00 H ATOM 111 CB HIS 12 -32.919 -28.481 20.486 1.00 50.00 C ATOM 112 CG HIS 12 -32.220 -29.550 19.703 1.00 50.00 C ATOM 113 HD1 HIS 12 -33.616 -31.067 19.767 1.00 50.00 H ATOM 114 ND1 HIS 12 -32.780 -30.787 19.470 1.00 50.00 N ATOM 115 CE1 HIS 12 -31.922 -31.526 18.744 1.00 50.00 C ATOM 116 CD2 HIS 12 -30.939 -29.669 19.022 1.00 50.00 C ATOM 117 NE2 HIS 12 -30.816 -30.861 18.472 1.00 50.00 N ATOM 118 N PHE 13 -34.558 -27.366 23.001 1.00 50.00 N ATOM 119 CA PHE 13 -35.119 -26.208 23.631 1.00 50.00 C ATOM 120 C PHE 13 -35.382 -26.479 25.075 1.00 50.00 C ATOM 121 O PHE 13 -35.682 -27.600 25.484 1.00 50.00 O ATOM 122 H PHE 13 -35.084 -28.067 22.798 1.00 50.00 H ATOM 123 CB PHE 13 -36.406 -25.783 22.921 1.00 50.00 C ATOM 124 CG PHE 13 -36.188 -25.262 21.529 1.00 50.00 C ATOM 125 CZ PHE 13 -35.782 -24.294 18.956 1.00 50.00 C ATOM 126 CD1 PHE 13 -36.412 -26.072 20.429 1.00 50.00 C ATOM 127 CE1 PHE 13 -36.211 -25.593 19.149 1.00 50.00 C ATOM 128 CD2 PHE 13 -35.759 -23.965 21.320 1.00 50.00 C ATOM 129 CE2 PHE 13 -35.558 -23.486 20.039 1.00 50.00 C ATOM 130 N HIS 14 -35.246 -25.415 25.887 1.00 50.00 N ATOM 131 CA HIS 14 -35.438 -25.484 27.303 1.00 50.00 C ATOM 132 C HIS 14 -36.903 -25.512 27.586 1.00 50.00 C ATOM 133 O HIS 14 -37.708 -24.941 26.851 1.00 50.00 O ATOM 134 H HIS 14 -35.024 -24.633 25.500 1.00 50.00 H ATOM 135 CB HIS 14 -34.759 -24.299 27.994 1.00 50.00 C ATOM 136 CG HIS 14 -33.265 -24.316 27.893 1.00 50.00 C ATOM 137 ND1 HIS 14 -32.479 -25.158 28.649 1.00 50.00 N ATOM 138 CE1 HIS 14 -31.187 -24.944 28.341 1.00 50.00 C ATOM 139 CD2 HIS 14 -32.268 -23.595 27.115 1.00 50.00 C ATOM 140 HE2 HIS 14 -30.255 -23.699 27.059 1.00 50.00 H ATOM 141 NE2 HIS 14 -31.053 -24.008 27.422 1.00 50.00 N ATOM 142 N TYR 15 -37.279 -26.206 28.676 1.00 50.00 N ATOM 143 CA TYR 15 -38.650 -26.326 29.076 1.00 50.00 C ATOM 144 C TYR 15 -38.763 -25.590 30.365 1.00 50.00 C ATOM 145 O TYR 15 -37.975 -25.814 31.281 1.00 50.00 O ATOM 146 H TYR 15 -36.632 -26.602 29.161 1.00 50.00 H ATOM 147 CB TYR 15 -39.045 -27.800 29.196 1.00 50.00 C ATOM 148 CG TYR 15 -39.060 -28.540 27.877 1.00 50.00 C ATOM 149 HH TYR 15 -38.303 -30.682 23.991 1.00 50.00 H ATOM 150 OH TYR 15 -39.084 -30.573 24.250 1.00 50.00 O ATOM 151 CZ TYR 15 -39.078 -29.900 25.451 1.00 50.00 C ATOM 152 CD1 TYR 15 -37.875 -28.850 27.223 1.00 50.00 C ATOM 153 CE1 TYR 15 -37.878 -29.526 26.018 1.00 50.00 C ATOM 154 CD2 TYR 15 -40.259 -28.924 27.292 1.00 50.00 C ATOM 155 CE2 TYR 15 -40.282 -29.600 26.086 1.00 50.00 C ATOM 156 N THR 16 -39.733 -24.669 30.473 1.00 50.00 N ATOM 157 CA THR 16 -39.864 -24.015 31.738 1.00 50.00 C ATOM 158 C THR 16 -41.310 -23.724 31.957 1.00 50.00 C ATOM 159 O THR 16 -42.102 -23.705 31.015 1.00 50.00 O ATOM 160 H THR 16 -40.287 -24.455 29.797 1.00 50.00 H ATOM 161 CB THR 16 -39.024 -22.725 31.796 1.00 50.00 C ATOM 162 HG1 THR 16 -39.812 -22.039 33.359 1.00 50.00 H ATOM 163 OG1 THR 16 -39.032 -22.207 33.132 1.00 50.00 O ATOM 164 CG2 THR 16 -39.600 -21.671 30.863 1.00 50.00 C ATOM 165 N VAL 17 -41.703 -23.525 33.230 1.00 50.00 N ATOM 166 CA VAL 17 -43.051 -23.115 33.466 1.00 50.00 C ATOM 167 C VAL 17 -42.998 -21.674 33.136 1.00 50.00 C ATOM 168 O VAL 17 -42.097 -20.969 33.587 1.00 50.00 O ATOM 169 H VAL 17 -41.140 -23.643 33.923 1.00 50.00 H ATOM 170 CB VAL 17 -43.491 -23.426 34.908 1.00 50.00 C ATOM 171 CG1 VAL 17 -44.892 -22.893 35.164 1.00 50.00 C ATOM 172 CG2 VAL 17 -43.430 -24.923 35.173 1.00 50.00 C ATOM 173 N THR 18 -43.954 -21.175 32.340 1.00 50.00 N ATOM 174 CA THR 18 -43.708 -19.834 31.936 1.00 50.00 C ATOM 175 C THR 18 -44.354 -18.867 32.856 1.00 50.00 C ATOM 176 O THR 18 -45.569 -18.673 32.866 1.00 50.00 O ATOM 177 H THR 18 -44.696 -21.601 32.060 1.00 50.00 H ATOM 178 CB THR 18 -44.201 -19.577 30.501 1.00 50.00 C ATOM 179 HG1 THR 18 -43.665 -21.237 29.800 1.00 50.00 H ATOM 180 OG1 THR 18 -43.514 -20.448 29.593 1.00 50.00 O ATOM 181 CG2 THR 18 -43.930 -18.138 30.093 1.00 50.00 C ATOM 182 N ASP 19 -43.504 -18.276 33.707 1.00 50.00 N ATOM 183 CA ASP 19 -43.868 -17.157 34.508 1.00 50.00 C ATOM 184 C ASP 19 -43.300 -16.054 33.687 1.00 50.00 C ATOM 185 O ASP 19 -43.119 -16.223 32.482 1.00 50.00 O ATOM 186 H ASP 19 -42.672 -18.615 33.760 1.00 50.00 H ATOM 187 CB ASP 19 -43.294 -17.300 35.919 1.00 50.00 C ATOM 188 CG ASP 19 -41.780 -17.247 35.940 1.00 50.00 C ATOM 189 OD1 ASP 19 -41.187 -16.795 34.938 1.00 50.00 O ATOM 190 OD2 ASP 19 -41.186 -17.660 36.958 1.00 50.00 O ATOM 191 N ILE 20 -43.019 -14.887 34.284 1.00 50.00 N ATOM 192 CA ILE 20 -42.358 -13.935 33.460 1.00 50.00 C ATOM 193 C ILE 20 -40.964 -14.448 33.349 1.00 50.00 C ATOM 194 O ILE 20 -40.266 -14.624 34.346 1.00 50.00 O ATOM 195 H ILE 20 -43.216 -14.683 35.138 1.00 50.00 H ATOM 196 CB ILE 20 -42.445 -12.516 34.055 1.00 50.00 C ATOM 197 CD1 ILE 20 -44.100 -10.776 34.907 1.00 50.00 C ATOM 198 CG1 ILE 20 -43.903 -12.058 34.128 1.00 50.00 C ATOM 199 CG2 ILE 20 -41.585 -11.550 33.256 1.00 50.00 C ATOM 200 N LYS 21 -40.536 -14.720 32.106 1.00 50.00 N ATOM 201 CA LYS 21 -39.230 -15.244 31.860 1.00 50.00 C ATOM 202 C LYS 21 -38.513 -14.069 31.294 1.00 50.00 C ATOM 203 O LYS 21 -38.925 -12.936 31.528 1.00 50.00 O ATOM 204 H LYS 21 -41.095 -14.565 31.419 1.00 50.00 H ATOM 205 CB LYS 21 -39.305 -16.453 30.926 1.00 50.00 C ATOM 206 CD LYS 21 -39.009 -18.577 32.233 1.00 50.00 C ATOM 207 CE LYS 21 -38.956 -18.291 33.725 1.00 50.00 C ATOM 208 CG LYS 21 -40.000 -17.662 31.531 1.00 50.00 C ATOM 209 HZ1 LYS 21 -38.539 -19.294 35.373 1.00 50.00 H ATOM 210 HZ2 LYS 21 -37.752 -19.765 34.246 1.00 50.00 H ATOM 211 HZ3 LYS 21 -39.149 -20.147 34.369 1.00 50.00 H ATOM 212 NZ LYS 21 -38.559 -19.496 34.507 1.00 50.00 N ATOM 213 N ASP 22 -37.396 -14.290 30.582 1.00 50.00 N ATOM 214 CA ASP 22 -36.740 -13.183 29.961 1.00 50.00 C ATOM 215 C ASP 22 -37.548 -12.918 28.736 1.00 50.00 C ATOM 216 O ASP 22 -37.088 -13.079 27.607 1.00 50.00 O ATOM 217 H ASP 22 -37.060 -15.120 30.492 1.00 50.00 H ATOM 218 CB ASP 22 -35.277 -13.522 29.670 1.00 50.00 C ATOM 219 CG ASP 22 -34.481 -12.318 29.205 1.00 50.00 C ATOM 220 OD1 ASP 22 -34.948 -11.179 29.417 1.00 50.00 O ATOM 221 OD2 ASP 22 -33.391 -12.513 28.627 1.00 50.00 O ATOM 222 N LEU 23 -38.804 -12.492 28.963 1.00 50.00 N ATOM 223 CA LEU 23 -39.740 -12.243 27.919 1.00 50.00 C ATOM 224 C LEU 23 -39.601 -10.795 27.597 1.00 50.00 C ATOM 225 O LEU 23 -40.133 -9.936 28.299 1.00 50.00 O ATOM 226 H LEU 23 -39.042 -12.366 29.822 1.00 50.00 H ATOM 227 CB LEU 23 -41.154 -12.625 28.364 1.00 50.00 C ATOM 228 CG LEU 23 -41.368 -14.087 28.757 1.00 50.00 C ATOM 229 CD1 LEU 23 -42.785 -14.305 29.265 1.00 50.00 C ATOM 230 CD2 LEU 23 -41.080 -15.008 27.581 1.00 50.00 C ATOM 231 N THR 24 -38.847 -10.491 26.528 1.00 50.00 N ATOM 232 CA THR 24 -38.637 -9.131 26.137 1.00 50.00 C ATOM 233 C THR 24 -39.936 -8.552 25.669 1.00 50.00 C ATOM 234 O THR 24 -40.285 -7.424 26.021 1.00 50.00 O ATOM 235 H THR 24 -38.472 -11.158 26.055 1.00 50.00 H ATOM 236 CB THR 24 -37.567 -9.019 25.034 1.00 50.00 C ATOM 237 HG1 THR 24 -36.410 -10.321 25.740 1.00 50.00 H ATOM 238 OG1 THR 24 -36.319 -9.526 25.522 1.00 50.00 O ATOM 239 CG2 THR 24 -37.376 -7.568 24.623 1.00 50.00 C ATOM 240 N LYS 25 -40.705 -9.326 24.874 1.00 50.00 N ATOM 241 CA LYS 25 -41.941 -8.833 24.336 1.00 50.00 C ATOM 242 C LYS 25 -43.012 -9.810 24.678 1.00 50.00 C ATOM 243 O LYS 25 -42.733 -10.970 24.962 1.00 50.00 O ATOM 244 H LYS 25 -40.433 -10.162 24.683 1.00 50.00 H ATOM 245 CB LYS 25 -41.823 -8.626 22.825 1.00 50.00 C ATOM 246 CD LYS 25 -40.797 -7.363 20.913 1.00 50.00 C ATOM 247 CE LYS 25 -39.774 -6.315 20.508 1.00 50.00 C ATOM 248 CG LYS 25 -40.819 -7.559 22.421 1.00 50.00 C ATOM 249 HZ1 LYS 25 -39.150 -5.477 18.834 1.00 50.00 H ATOM 250 HZ2 LYS 25 -40.560 -5.820 18.767 1.00 50.00 H ATOM 251 HZ3 LYS 25 -39.554 -6.858 18.623 1.00 50.00 H ATOM 252 NZ LYS 25 -39.758 -6.095 19.035 1.00 50.00 N ATOM 253 N LEU 26 -44.285 -9.370 24.643 1.00 50.00 N ATOM 254 CA LEU 26 -45.340 -10.263 25.018 1.00 50.00 C ATOM 255 C LEU 26 -45.341 -11.409 24.067 1.00 50.00 C ATOM 256 O LEU 26 -45.179 -11.245 22.858 1.00 50.00 O ATOM 257 H LEU 26 -44.477 -8.529 24.388 1.00 50.00 H ATOM 258 CB LEU 26 -46.684 -9.533 25.022 1.00 50.00 C ATOM 259 CG LEU 26 -46.858 -8.437 26.076 1.00 50.00 C ATOM 260 CD1 LEU 26 -48.170 -7.696 25.870 1.00 50.00 C ATOM 261 CD2 LEU 26 -46.797 -9.025 27.478 1.00 50.00 C ATOM 262 N GLY 27 -45.505 -12.622 24.628 1.00 50.00 N ATOM 263 CA GLY 27 -45.527 -13.830 23.863 1.00 50.00 C ATOM 264 C GLY 27 -46.955 -14.235 23.725 1.00 50.00 C ATOM 265 O GLY 27 -47.827 -13.408 23.461 1.00 50.00 O ATOM 266 H GLY 27 -45.602 -12.653 25.522 1.00 50.00 H ATOM 267 N ALA 28 -47.224 -15.542 23.904 1.00 50.00 N ATOM 268 CA ALA 28 -48.563 -16.029 23.768 1.00 50.00 C ATOM 269 C ALA 28 -49.410 -15.267 24.731 1.00 50.00 C ATOM 270 O ALA 28 -49.011 -15.013 25.866 1.00 50.00 O ATOM 271 H ALA 28 -46.558 -16.111 24.110 1.00 50.00 H ATOM 272 CB ALA 28 -48.611 -17.528 24.022 1.00 50.00 C ATOM 273 N ILE 29 -50.610 -14.866 24.273 1.00 50.00 N ATOM 274 CA ILE 29 -51.502 -14.090 25.080 1.00 50.00 C ATOM 275 C ILE 29 -51.925 -14.919 26.243 1.00 50.00 C ATOM 276 O ILE 29 -51.909 -14.458 27.383 1.00 50.00 O ATOM 277 H ILE 29 -50.848 -15.099 23.437 1.00 50.00 H ATOM 278 CB ILE 29 -52.717 -13.600 24.269 1.00 50.00 C ATOM 279 CD1 ILE 29 -53.343 -12.265 22.189 1.00 50.00 C ATOM 280 CG1 ILE 29 -52.279 -12.576 23.220 1.00 50.00 C ATOM 281 CG2 ILE 29 -53.785 -13.041 25.195 1.00 50.00 C ATOM 282 N TYR 30 -52.288 -16.190 25.995 1.00 50.00 N ATOM 283 CA TYR 30 -52.729 -16.966 27.109 1.00 50.00 C ATOM 284 C TYR 30 -51.576 -17.817 27.505 1.00 50.00 C ATOM 285 O TYR 30 -51.271 -18.822 26.865 1.00 50.00 O ATOM 286 H TYR 30 -52.262 -16.556 25.173 1.00 50.00 H ATOM 287 CB TYR 30 -53.966 -17.785 26.736 1.00 50.00 C ATOM 288 CG TYR 30 -55.179 -16.947 26.403 1.00 50.00 C ATOM 289 HH TYR 30 -58.497 -14.450 24.664 1.00 50.00 H ATOM 290 OH TYR 30 -58.511 -14.639 25.472 1.00 50.00 O ATOM 291 CZ TYR 30 -57.409 -15.403 25.781 1.00 50.00 C ATOM 292 CD1 TYR 30 -55.397 -16.494 25.108 1.00 50.00 C ATOM 293 CE1 TYR 30 -56.503 -15.726 24.795 1.00 50.00 C ATOM 294 CD2 TYR 30 -56.103 -16.611 27.384 1.00 50.00 C ATOM 295 CE2 TYR 30 -57.215 -15.844 27.090 1.00 50.00 C ATOM 296 N ASP 31 -50.900 -17.417 28.596 1.00 50.00 N ATOM 297 CA ASP 31 -49.757 -18.149 29.037 1.00 50.00 C ATOM 298 C ASP 31 -50.231 -19.377 29.736 1.00 50.00 C ATOM 299 O ASP 31 -50.948 -19.311 30.732 1.00 50.00 O ATOM 300 H ASP 31 -51.169 -16.687 29.049 1.00 50.00 H ATOM 301 CB ASP 31 -48.885 -17.282 29.948 1.00 50.00 C ATOM 302 CG ASP 31 -47.609 -17.982 30.371 1.00 50.00 C ATOM 303 OD1 ASP 31 -47.526 -19.218 30.205 1.00 50.00 O ATOM 304 OD2 ASP 31 -46.691 -17.296 30.868 1.00 50.00 O ATOM 305 N LYS 32 -49.842 -20.546 29.196 1.00 50.00 N ATOM 306 CA LYS 32 -50.208 -21.798 29.782 1.00 50.00 C ATOM 307 C LYS 32 -49.215 -22.098 30.850 1.00 50.00 C ATOM 308 O LYS 32 -48.245 -21.367 31.042 1.00 50.00 O ATOM 309 H LYS 32 -49.340 -20.527 28.450 1.00 50.00 H ATOM 310 CB LYS 32 -50.253 -22.895 28.717 1.00 50.00 C ATOM 311 CD LYS 32 -50.840 -25.258 28.109 1.00 50.00 C ATOM 312 CE LYS 32 -51.184 -26.639 28.642 1.00 50.00 C ATOM 313 CG LYS 32 -50.716 -24.246 29.236 1.00 50.00 C ATOM 314 HZ1 LYS 32 -52.695 -27.488 29.586 1.00 50.00 H ATOM 315 HZ2 LYS 32 -53.147 -26.437 28.690 1.00 50.00 H ATOM 316 HZ3 LYS 32 -52.542 -26.095 29.967 1.00 50.00 H ATOM 317 NZ LYS 32 -52.527 -26.668 29.286 1.00 50.00 N ATOM 318 N THR 33 -49.477 -23.178 31.607 1.00 50.00 N ATOM 319 CA THR 33 -48.640 -23.575 32.698 1.00 50.00 C ATOM 320 C THR 33 -47.270 -23.930 32.211 1.00 50.00 C ATOM 321 O THR 33 -46.275 -23.433 32.736 1.00 50.00 O ATOM 322 H THR 33 -50.211 -23.658 31.405 1.00 50.00 H ATOM 323 CB THR 33 -49.241 -24.768 33.466 1.00 50.00 C ATOM 324 HG1 THR 33 -51.019 -24.163 33.423 1.00 50.00 H ATOM 325 OG1 THR 33 -50.502 -24.390 34.030 1.00 50.00 O ATOM 326 CG2 THR 33 -48.313 -25.199 34.591 1.00 50.00 C ATOM 327 N LYS 34 -47.168 -24.772 31.170 1.00 50.00 N ATOM 328 CA LYS 34 -45.852 -25.179 30.778 1.00 50.00 C ATOM 329 C LYS 34 -45.619 -24.748 29.371 1.00 50.00 C ATOM 330 O LYS 34 -46.508 -24.833 28.525 1.00 50.00 O ATOM 331 H LYS 34 -47.886 -25.081 30.724 1.00 50.00 H ATOM 332 CB LYS 34 -45.692 -26.693 30.931 1.00 50.00 C ATOM 333 CD LYS 34 -45.548 -28.684 32.452 1.00 50.00 C ATOM 334 CE LYS 34 -45.679 -29.182 33.882 1.00 50.00 C ATOM 335 CG LYS 34 -45.781 -27.185 32.367 1.00 50.00 C ATOM 336 HZ1 LYS 34 -45.546 -30.909 34.829 1.00 50.00 H ATOM 337 HZ2 LYS 34 -44.643 -30.851 33.691 1.00 50.00 H ATOM 338 HZ3 LYS 34 -46.063 -31.076 33.481 1.00 50.00 H ATOM 339 NZ LYS 34 -45.460 -30.652 33.981 1.00 50.00 N ATOM 340 N LYS 35 -44.399 -24.243 29.095 1.00 50.00 N ATOM 341 CA LYS 35 -44.112 -23.770 27.775 1.00 50.00 C ATOM 342 C LYS 35 -42.839 -24.382 27.301 1.00 50.00 C ATOM 343 O LYS 35 -41.947 -24.705 28.085 1.00 50.00 O ATOM 344 H LYS 35 -43.768 -24.203 29.734 1.00 50.00 H ATOM 345 CB LYS 35 -44.028 -22.242 27.761 1.00 50.00 C ATOM 346 CD LYS 35 -43.769 -20.127 26.434 1.00 50.00 C ATOM 347 CE LYS 35 -43.523 -19.532 25.057 1.00 50.00 C ATOM 348 CG LYS 35 -43.786 -21.646 26.384 1.00 50.00 C ATOM 349 HZ1 LYS 35 -43.324 -17.730 24.277 1.00 50.00 H ATOM 350 HZ2 LYS 35 -42.808 -17.786 25.633 1.00 50.00 H ATOM 351 HZ3 LYS 35 -44.242 -17.727 25.403 1.00 50.00 H ATOM 352 NZ LYS 35 -43.469 -18.045 25.096 1.00 50.00 N ATOM 353 N TYR 36 -42.752 -24.566 25.971 1.00 50.00 N ATOM 354 CA TYR 36 -41.598 -25.114 25.328 1.00 50.00 C ATOM 355 C TYR 36 -41.181 -24.090 24.327 1.00 50.00 C ATOM 356 O TYR 36 -42.001 -23.589 23.559 1.00 50.00 O ATOM 357 H TYR 36 -43.468 -24.324 25.482 1.00 50.00 H ATOM 358 CB TYR 36 -41.928 -26.469 24.700 1.00 50.00 C ATOM 359 CG TYR 36 -40.763 -27.113 23.983 1.00 50.00 C ATOM 360 HH TYR 36 -37.786 -29.124 21.268 1.00 50.00 H ATOM 361 OH TYR 36 -37.547 -28.878 22.024 1.00 50.00 O ATOM 362 CZ TYR 36 -38.613 -28.295 22.671 1.00 50.00 C ATOM 363 CD1 TYR 36 -39.522 -27.223 24.597 1.00 50.00 C ATOM 364 CE1 TYR 36 -38.451 -27.808 23.951 1.00 50.00 C ATOM 365 CD2 TYR 36 -40.907 -27.608 22.693 1.00 50.00 C ATOM 366 CE2 TYR 36 -39.847 -28.198 22.030 1.00 50.00 C ATOM 367 N TRP 37 -39.886 -23.730 24.320 1.00 50.00 N ATOM 368 CA TRP 37 -39.479 -22.701 23.415 1.00 50.00 C ATOM 369 C TRP 37 -39.325 -23.314 22.067 1.00 50.00 C ATOM 370 O TRP 37 -38.725 -24.372 21.906 1.00 50.00 O ATOM 371 H TRP 37 -39.281 -24.116 24.863 1.00 50.00 H ATOM 372 CB TRP 37 -38.182 -22.047 23.894 1.00 50.00 C ATOM 373 HB2 TRP 37 -37.956 -21.203 23.340 1.00 50.00 H ATOM 374 HB3 TRP 37 -37.504 -22.666 24.292 1.00 50.00 H ATOM 375 CG TRP 37 -38.349 -21.222 25.134 1.00 50.00 C ATOM 376 CD1 TRP 37 -38.032 -21.588 26.410 1.00 50.00 C ATOM 377 HE1 TRP 37 -38.191 -20.595 28.209 1.00 50.00 H ATOM 378 NE1 TRP 37 -38.325 -20.567 27.282 1.00 50.00 N ATOM 379 CD2 TRP 37 -38.872 -19.891 25.214 1.00 50.00 C ATOM 380 CE2 TRP 37 -38.842 -19.514 26.569 1.00 50.00 C ATOM 381 CH2 TRP 37 -39.759 -17.397 26.066 1.00 50.00 C ATOM 382 CZ2 TRP 37 -39.285 -18.267 27.007 1.00 50.00 C ATOM 383 CE3 TRP 37 -39.362 -18.982 24.273 1.00 50.00 C ATOM 384 CZ3 TRP 37 -39.799 -17.747 24.711 1.00 50.00 C ATOM 385 N VAL 38 -39.906 -22.641 21.063 1.00 50.00 N ATOM 386 CA VAL 38 -39.807 -23.038 19.696 1.00 50.00 C ATOM 387 C VAL 38 -39.633 -21.739 18.995 1.00 50.00 C ATOM 388 O VAL 38 -39.777 -20.694 19.625 1.00 50.00 O ATOM 389 H VAL 38 -40.377 -21.905 21.284 1.00 50.00 H ATOM 390 CB VAL 38 -41.045 -23.841 19.250 1.00 50.00 C ATOM 391 CG1 VAL 38 -41.178 -25.114 20.071 1.00 50.00 C ATOM 392 CG2 VAL 38 -42.301 -22.992 19.368 1.00 50.00 C ATOM 393 N TYR 39 -39.283 -21.751 17.695 1.00 50.00 N ATOM 394 CA TYR 39 -39.102 -20.482 17.065 1.00 50.00 C ATOM 395 C TYR 39 -40.445 -19.826 17.125 1.00 50.00 C ATOM 396 O TYR 39 -40.566 -18.677 17.547 1.00 50.00 O ATOM 397 H TYR 39 -39.163 -22.508 17.224 1.00 50.00 H ATOM 398 CB TYR 39 -38.579 -20.662 15.639 1.00 50.00 C ATOM 399 CG TYR 39 -38.409 -19.364 14.881 1.00 50.00 C ATOM 400 HH TYR 39 -37.223 -15.429 13.045 1.00 50.00 H ATOM 401 OH TYR 39 -37.928 -15.795 12.804 1.00 50.00 O ATOM 402 CZ TYR 39 -38.089 -16.976 13.490 1.00 50.00 C ATOM 403 CD1 TYR 39 -37.303 -18.554 15.097 1.00 50.00 C ATOM 404 CE1 TYR 39 -37.139 -17.366 14.409 1.00 50.00 C ATOM 405 CD2 TYR 39 -39.357 -18.955 13.952 1.00 50.00 C ATOM 406 CE2 TYR 39 -39.210 -17.771 13.254 1.00 50.00 C ATOM 407 N GLN 40 -41.503 -20.561 16.726 1.00 50.00 N ATOM 408 CA GLN 40 -42.825 -20.025 16.867 1.00 50.00 C ATOM 409 C GLN 40 -43.105 -19.963 18.333 1.00 50.00 C ATOM 410 O GLN 40 -43.584 -18.956 18.850 1.00 50.00 O ATOM 411 H GLN 40 -41.386 -21.381 16.374 1.00 50.00 H ATOM 412 CB GLN 40 -43.837 -20.889 16.113 1.00 50.00 C ATOM 413 CD GLN 40 -44.658 -21.763 13.890 1.00 50.00 C ATOM 414 CG GLN 40 -43.707 -20.820 14.600 1.00 50.00 C ATOM 415 OE1 GLN 40 -44.705 -22.956 14.191 1.00 50.00 O ATOM 416 HE21 GLN 40 -46.004 -21.745 12.491 1.00 50.00 H ATOM 417 HE22 GLN 40 -45.357 -20.351 12.755 1.00 50.00 H ATOM 418 NE2 GLN 40 -45.422 -21.230 12.943 1.00 50.00 N ATOM 419 N GLY 41 -42.764 -21.062 19.038 1.00 50.00 N ATOM 420 CA GLY 41 -42.999 -21.198 20.447 1.00 50.00 C ATOM 421 C GLY 41 -44.226 -22.040 20.601 1.00 50.00 C ATOM 422 O GLY 41 -45.227 -21.802 19.929 1.00 50.00 O ATOM 423 H GLY 41 -42.371 -21.729 18.581 1.00 50.00 H ATOM 424 N LYS 42 -44.190 -23.055 21.492 1.00 50.00 N ATOM 425 CA LYS 42 -45.352 -23.882 21.645 1.00 50.00 C ATOM 426 C LYS 42 -45.402 -24.404 23.045 1.00 50.00 C ATOM 427 O LYS 42 -44.420 -24.905 23.588 1.00 50.00 O ATOM 428 H LYS 42 -43.455 -23.217 21.984 1.00 50.00 H ATOM 429 CB LYS 42 -45.333 -25.028 20.630 1.00 50.00 C ATOM 430 CD LYS 42 -45.330 -25.757 18.229 1.00 50.00 C ATOM 431 CE LYS 42 -45.328 -25.300 16.779 1.00 50.00 C ATOM 432 CG LYS 42 -45.382 -24.573 19.181 1.00 50.00 C ATOM 433 HZ1 LYS 42 -44.109 -24.321 15.575 1.00 50.00 H ATOM 434 HZ2 LYS 42 -43.377 -25.109 16.552 1.00 50.00 H ATOM 435 HZ3 LYS 42 -43.995 -23.854 16.947 1.00 50.00 H ATOM 436 NZ LYS 42 -44.076 -24.573 16.428 1.00 50.00 N ATOM 437 N PRO 43 -46.554 -24.264 23.637 1.00 50.00 N ATOM 438 CA PRO 43 -46.749 -24.816 24.951 1.00 50.00 C ATOM 439 C PRO 43 -46.991 -26.280 24.831 1.00 50.00 C ATOM 440 O PRO 43 -47.310 -26.745 23.739 1.00 50.00 O ATOM 441 CB PRO 43 -47.968 -24.064 25.490 1.00 50.00 C ATOM 442 CD PRO 43 -47.561 -23.247 23.278 1.00 50.00 C ATOM 443 CG PRO 43 -48.063 -22.845 24.635 1.00 50.00 C ATOM 444 N VAL 44 -46.822 -27.044 25.925 1.00 50.00 N ATOM 445 CA VAL 44 -47.105 -28.439 25.802 1.00 50.00 C ATOM 446 C VAL 44 -48.180 -28.771 26.778 1.00 50.00 C ATOM 447 O VAL 44 -48.108 -28.428 27.957 1.00 50.00 O ATOM 448 H VAL 44 -46.542 -26.709 26.713 1.00 50.00 H ATOM 449 CB VAL 44 -45.845 -29.293 26.034 1.00 50.00 C ATOM 450 CG1 VAL 44 -46.181 -30.774 25.950 1.00 50.00 C ATOM 451 CG2 VAL 44 -44.763 -28.931 25.028 1.00 50.00 C ATOM 452 N MET 45 -49.220 -29.459 26.279 1.00 50.00 N ATOM 453 CA MET 45 -50.338 -29.852 27.078 1.00 50.00 C ATOM 454 C MET 45 -49.931 -31.079 27.820 1.00 50.00 C ATOM 455 O MET 45 -48.929 -31.715 27.497 1.00 50.00 O ATOM 456 H MET 45 -49.194 -29.672 25.405 1.00 50.00 H ATOM 457 CB MET 45 -51.568 -30.087 26.198 1.00 50.00 C ATOM 458 SD MET 45 -52.533 -27.510 26.523 1.00 50.00 S ATOM 459 CE MET 45 -54.066 -28.162 27.182 1.00 50.00 C ATOM 460 CG MET 45 -52.029 -28.856 25.435 1.00 50.00 C ATOM 461 N PRO 46 -50.676 -31.409 28.833 1.00 50.00 N ATOM 462 CA PRO 46 -50.354 -32.579 29.598 1.00 50.00 C ATOM 463 C PRO 46 -50.602 -33.786 28.755 1.00 50.00 C ATOM 464 O PRO 46 -51.401 -33.704 27.824 1.00 50.00 O ATOM 465 CB PRO 46 -51.293 -32.504 30.804 1.00 50.00 C ATOM 466 CD PRO 46 -51.752 -30.596 29.434 1.00 50.00 C ATOM 467 CG PRO 46 -51.717 -31.074 30.857 1.00 50.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 85.59 52.9 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 90.01 50.0 34 100.0 34 ARMSMC SURFACE . . . . . . . . 91.76 46.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 47.17 83.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.74 43.8 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 85.29 41.4 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 90.95 41.2 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 88.33 37.0 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 61.80 80.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 53.92 52.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 48.81 52.4 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 48.15 61.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 55.05 50.0 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 44.74 66.7 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 50.33 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 52.06 71.4 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 96.86 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 50.33 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.05 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 77.05 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 70.65 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 77.05 50.0 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.82 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.82 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.1949 CRMSCA SECONDARY STRUCTURE . . 5.62 17 100.0 17 CRMSCA SURFACE . . . . . . . . 7.00 29 100.0 29 CRMSCA BURIED . . . . . . . . 5.89 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.00 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 5.64 85 100.0 85 CRMSMC SURFACE . . . . . . . . 7.18 143 100.0 143 CRMSMC BURIED . . . . . . . . 6.03 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.26 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 8.92 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 8.16 84 100.0 84 CRMSSC SURFACE . . . . . . . . 9.74 127 100.0 127 CRMSSC BURIED . . . . . . . . 6.75 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.17 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 7.03 152 100.0 152 CRMSALL SURFACE . . . . . . . . 8.51 243 100.0 243 CRMSALL BURIED . . . . . . . . 6.39 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 43.967 0.790 0.813 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 44.727 0.811 0.829 17 100.0 17 ERRCA SURFACE . . . . . . . . 43.860 0.787 0.811 29 100.0 29 ERRCA BURIED . . . . . . . . 44.484 0.804 0.823 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 43.876 0.788 0.812 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 44.775 0.813 0.831 85 100.0 85 ERRMC SURFACE . . . . . . . . 43.780 0.785 0.810 143 100.0 143 ERRMC BURIED . . . . . . . . 44.334 0.799 0.819 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 41.493 0.716 0.754 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 41.795 0.724 0.761 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 42.259 0.735 0.768 84 100.0 84 ERRSC SURFACE . . . . . . . . 41.051 0.703 0.745 127 100.0 127 ERRSC BURIED . . . . . . . . 43.426 0.769 0.794 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.736 0.753 0.784 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 43.518 0.775 0.800 152 100.0 152 ERRALL SURFACE . . . . . . . . 42.482 0.746 0.779 243 100.0 243 ERRALL BURIED . . . . . . . . 43.902 0.785 0.807 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 16 32 35 35 DISTCA CA (P) 0.00 2.86 8.57 45.71 91.43 35 DISTCA CA (RMS) 0.00 1.81 2.05 3.71 5.60 DISTCA ALL (N) 1 7 26 92 243 296 296 DISTALL ALL (P) 0.34 2.36 8.78 31.08 82.09 296 DISTALL ALL (RMS) 0.96 1.60 2.29 3.83 6.21 DISTALL END of the results output