####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS208_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS208_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 16 - 32 4.92 10.29 LCS_AVERAGE: 43.18 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 12 - 18 1.13 13.21 LONGEST_CONTINUOUS_SEGMENT: 7 28 - 34 1.76 12.51 LONGEST_CONTINUOUS_SEGMENT: 7 40 - 46 1.71 15.97 LCS_AVERAGE: 17.63 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 12 - 17 0.91 12.98 LONGEST_CONTINUOUS_SEGMENT: 6 13 - 18 0.94 13.45 LONGEST_CONTINUOUS_SEGMENT: 6 28 - 33 0.56 15.30 LCS_AVERAGE: 13.22 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 6 7 14 0 3 7 8 8 8 9 10 10 12 12 12 16 17 17 17 18 19 21 22 LCS_GDT F 13 F 13 6 7 14 3 5 7 8 8 8 9 10 10 12 12 12 16 17 17 18 20 21 23 23 LCS_GDT H 14 H 14 6 7 14 3 5 7 8 8 8 9 10 10 12 12 12 16 17 17 18 20 21 23 23 LCS_GDT Y 15 Y 15 6 7 14 3 5 7 8 8 8 9 10 10 12 12 12 16 17 17 19 21 21 23 25 LCS_GDT T 16 T 16 6 7 17 3 5 7 8 8 8 9 10 10 12 12 13 16 17 18 20 21 21 23 25 LCS_GDT V 17 V 17 6 7 17 3 5 7 8 8 8 9 10 11 12 13 15 17 17 18 20 21 22 24 26 LCS_GDT T 18 T 18 6 7 17 3 3 7 8 8 8 9 10 11 12 13 16 17 17 18 20 21 22 24 26 LCS_GDT D 19 D 19 3 5 17 3 3 4 5 5 7 7 8 11 12 14 16 17 17 20 21 24 25 26 26 LCS_GDT I 20 I 20 3 5 17 3 3 4 5 5 7 7 8 11 12 13 16 17 17 20 21 24 25 26 26 LCS_GDT K 21 K 21 3 5 17 3 5 7 8 8 8 8 10 11 12 14 16 17 17 20 21 24 25 26 26 LCS_GDT D 22 D 22 3 5 17 3 3 4 4 5 6 9 10 11 12 14 16 17 20 20 22 24 25 26 26 LCS_GDT L 23 L 23 3 3 17 3 3 4 4 5 6 9 10 11 12 14 16 17 20 21 23 24 25 26 26 LCS_GDT T 24 T 24 3 5 17 3 3 4 4 5 6 8 9 11 12 14 16 17 20 21 23 24 25 26 26 LCS_GDT K 25 K 25 3 5 17 3 3 4 5 6 6 8 9 10 11 12 14 15 20 21 22 24 25 26 26 LCS_GDT L 26 L 26 3 5 17 3 3 5 6 6 7 7 9 10 11 12 14 16 20 21 23 24 25 26 26 LCS_GDT G 27 G 27 3 5 17 3 3 4 5 6 6 8 10 11 13 14 16 17 20 21 23 24 25 26 26 LCS_GDT A 28 A 28 6 7 17 0 6 6 8 9 9 10 11 11 13 14 16 17 20 21 23 24 25 26 26 LCS_GDT I 29 I 29 6 7 17 4 6 7 8 9 9 10 11 11 13 14 16 17 20 21 23 24 25 26 26 LCS_GDT Y 30 Y 30 6 7 17 3 6 7 8 9 9 10 11 11 13 14 16 17 20 21 23 24 25 26 26 LCS_GDT D 31 D 31 6 7 17 4 6 7 8 9 9 10 11 11 13 14 16 17 20 21 23 24 25 26 26 LCS_GDT K 32 K 32 6 7 17 4 6 6 8 9 9 10 11 11 13 14 16 17 20 21 23 24 25 26 26 LCS_GDT T 33 T 33 6 7 14 4 6 7 8 9 9 10 11 11 13 14 16 17 20 21 23 24 25 26 26 LCS_GDT K 34 K 34 5 7 14 3 4 5 5 6 9 10 11 11 13 14 16 17 20 21 23 24 25 26 26 LCS_GDT K 35 K 35 5 5 14 3 4 5 5 5 7 8 10 11 13 14 16 17 20 21 23 24 25 26 26 LCS_GDT Y 36 Y 36 5 5 14 3 4 5 5 5 6 7 8 9 11 13 15 17 20 21 23 24 25 26 26 LCS_GDT W 37 W 37 5 5 14 3 3 5 5 5 6 6 8 9 11 12 14 17 20 21 23 24 25 26 26 LCS_GDT V 38 V 38 3 5 14 3 3 3 5 5 6 6 8 9 11 12 14 17 20 21 23 24 25 26 26 LCS_GDT Y 39 Y 39 3 6 14 3 3 3 5 5 7 8 8 10 11 12 14 17 20 21 23 24 25 26 26 LCS_GDT Q 40 Q 40 5 7 14 3 3 5 5 6 7 8 9 10 11 12 12 16 20 20 23 24 24 26 26 LCS_GDT G 41 G 41 5 7 14 3 4 5 6 6 7 10 10 11 13 14 15 17 20 21 23 24 25 26 26 LCS_GDT K 42 K 42 5 7 14 3 5 7 8 9 9 10 11 11 13 14 15 17 20 21 23 24 25 26 26 LCS_GDT P 43 P 43 5 7 11 3 4 5 6 6 7 10 11 11 13 14 14 16 18 21 23 24 25 26 26 LCS_GDT V 44 V 44 5 7 11 3 5 7 8 9 9 10 11 11 13 14 15 16 18 21 23 24 25 26 26 LCS_GDT M 45 M 45 3 7 11 3 4 7 8 9 9 10 11 11 13 14 14 16 18 21 23 24 24 26 26 LCS_GDT P 46 P 46 3 7 11 3 4 4 6 6 7 8 10 11 13 13 13 14 16 18 23 24 24 24 25 LCS_AVERAGE LCS_A: 24.68 ( 13.22 17.63 43.18 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 6 7 8 9 9 10 11 11 13 14 16 17 20 21 23 24 25 26 26 GDT PERCENT_AT 11.43 17.14 20.00 22.86 25.71 25.71 28.57 31.43 31.43 37.14 40.00 45.71 48.57 57.14 60.00 65.71 68.57 71.43 74.29 74.29 GDT RMS_LOCAL 0.30 0.56 0.88 1.10 1.40 1.40 1.68 2.09 2.09 2.76 3.28 4.59 4.76 5.35 5.50 6.00 6.10 6.47 6.61 6.61 GDT RMS_ALL_AT 15.91 15.30 12.14 12.83 11.92 11.92 11.98 11.78 11.78 11.98 11.29 9.87 9.92 10.69 10.64 10.70 10.66 9.94 10.08 10.08 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 15 Y 15 # possible swapping detected: D 19 D 19 # possible swapping detected: Y 30 Y 30 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 19.779 0 0.591 1.401 23.347 0.000 0.000 LGA F 13 F 13 17.055 0 0.423 1.167 20.619 0.000 0.000 LGA H 14 H 14 15.341 0 0.071 1.249 21.252 0.000 0.000 LGA Y 15 Y 15 11.283 0 0.157 0.927 14.024 0.000 12.857 LGA T 16 T 16 15.624 0 0.219 1.220 18.896 0.000 0.000 LGA V 17 V 17 18.589 0 0.524 0.600 22.699 0.000 0.000 LGA T 18 T 18 21.328 0 0.346 0.414 21.928 0.000 0.000 LGA D 19 D 19 19.456 0 0.072 1.267 21.189 0.000 0.000 LGA I 20 I 20 18.138 0 0.236 0.994 20.363 0.000 0.000 LGA K 21 K 21 18.112 0 0.646 1.260 22.826 0.000 0.000 LGA D 22 D 22 16.060 0 0.142 1.071 16.468 0.000 0.000 LGA L 23 L 23 11.374 0 0.619 1.082 12.989 0.000 1.667 LGA T 24 T 24 10.931 0 0.648 0.528 11.890 0.000 0.000 LGA K 25 K 25 13.596 0 0.191 0.546 22.938 0.000 0.000 LGA L 26 L 26 11.594 0 0.152 0.279 15.109 0.000 0.000 LGA G 27 G 27 7.141 0 0.686 0.686 8.238 14.524 14.524 LGA A 28 A 28 1.672 0 0.451 0.505 3.255 73.929 77.238 LGA I 29 I 29 0.907 0 0.099 0.605 4.845 90.595 71.607 LGA Y 30 Y 30 1.353 0 0.064 0.325 5.945 85.952 54.643 LGA D 31 D 31 1.037 0 0.254 1.019 6.399 73.571 53.631 LGA K 32 K 32 2.137 0 0.243 0.393 9.292 73.095 43.122 LGA T 33 T 33 1.365 0 0.120 0.646 3.994 81.786 68.231 LGA K 34 K 34 4.218 0 0.673 0.853 8.534 43.690 26.825 LGA K 35 K 35 6.729 0 0.435 1.313 7.977 11.190 30.529 LGA Y 36 Y 36 10.709 0 0.345 1.495 12.381 0.357 0.754 LGA W 37 W 37 12.436 0 0.591 1.349 22.489 0.000 0.000 LGA V 38 V 38 11.471 0 0.105 0.950 13.906 0.000 0.000 LGA Y 39 Y 39 11.722 0 0.361 0.686 19.882 0.000 0.000 LGA Q 40 Q 40 12.470 0 0.233 1.208 19.057 0.119 0.053 LGA G 41 G 41 5.946 0 0.540 0.540 8.145 25.119 25.119 LGA K 42 K 42 0.891 0 0.074 1.652 8.857 73.452 47.460 LGA P 43 P 43 3.460 0 0.122 0.171 5.509 59.167 47.755 LGA V 44 V 44 1.061 0 0.356 0.458 4.584 62.619 62.585 LGA M 45 M 45 1.859 0 0.642 1.068 2.785 70.952 72.083 LGA P 46 P 46 5.455 0 0.146 0.153 8.810 37.619 25.034 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 9.258 9.270 10.575 25.078 21.021 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 11 2.09 34.286 29.057 0.502 LGA_LOCAL RMSD: 2.091 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.777 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 9.258 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.662945 * X + 0.222757 * Y + -0.714761 * Z + -92.454231 Y_new = -0.203578 * X + -0.865100 * Y + -0.458431 * Z + -23.759577 Z_new = -0.720458 * X + 0.449424 * Y + -0.528165 * Z + 154.572647 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.297940 0.804463 2.436567 [DEG: -17.0707 46.0923 139.6050 ] ZXZ: -1.000507 2.127234 -1.013058 [DEG: -57.3248 121.8816 -58.0440 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS208_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS208_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 11 2.09 29.057 9.26 REMARK ---------------------------------------------------------- MOLECULE T0548TS208_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 87 N HIS 12 -51.669 -13.747 29.899 1.00 0.00 N ATOM 88 CA HIS 12 -52.944 -14.056 29.336 1.00 0.00 C ATOM 89 ND1 HIS 12 -56.262 -12.617 29.639 1.00 0.00 N ATOM 90 CG HIS 12 -55.003 -12.940 30.086 1.00 0.00 C ATOM 91 CB HIS 12 -53.759 -12.783 29.267 1.00 0.00 C ATOM 92 NE2 HIS 12 -56.507 -13.412 31.702 1.00 0.00 N ATOM 93 CD2 HIS 12 -55.169 -13.423 31.348 1.00 0.00 C ATOM 94 CE1 HIS 12 -57.125 -12.920 30.643 1.00 0.00 C ATOM 95 C HIS 12 -52.820 -14.553 27.933 1.00 0.00 C ATOM 96 O HIS 12 -53.814 -14.612 27.212 1.00 0.00 O ATOM 97 N PHE 13 -51.610 -14.919 27.495 1.00 0.00 N ATOM 98 CA PHE 13 -51.433 -15.263 26.120 1.00 0.00 C ATOM 99 CB PHE 13 -50.113 -14.703 25.737 1.00 0.00 C ATOM 100 CG PHE 13 -50.412 -13.486 24.922 1.00 0.00 C ATOM 101 CD1 PHE 13 -51.515 -13.452 24.093 1.00 0.00 C ATOM 102 CD2 PHE 13 -49.597 -12.379 24.987 1.00 0.00 C ATOM 103 CE1 PHE 13 -51.800 -12.338 23.340 1.00 0.00 C ATOM 104 CE2 PHE 13 -49.876 -11.259 24.239 1.00 0.00 C ATOM 105 CZ PHE 13 -50.979 -11.239 23.415 1.00 0.00 C ATOM 106 C PHE 13 -51.907 -16.722 25.986 1.00 0.00 C ATOM 107 O PHE 13 -53.112 -16.900 25.829 1.00 0.00 O ATOM 108 N HIS 14 -51.073 -17.789 26.102 1.00 0.00 N ATOM 109 CA HIS 14 -51.246 -18.863 27.086 1.00 0.00 C ATOM 110 ND1 HIS 14 -53.390 -21.671 26.080 1.00 0.00 N ATOM 111 CG HIS 14 -53.010 -20.350 26.035 1.00 0.00 C ATOM 112 CB HIS 14 -52.642 -19.555 27.241 1.00 0.00 C ATOM 113 NE2 HIS 14 -53.376 -21.082 23.936 1.00 0.00 N ATOM 114 CD2 HIS 14 -53.010 -20.004 24.720 1.00 0.00 C ATOM 115 CE1 HIS 14 -53.594 -22.058 24.796 1.00 0.00 C ATOM 116 C HIS 14 -50.199 -19.891 26.817 1.00 0.00 C ATOM 117 O HIS 14 -50.258 -20.662 25.863 1.00 0.00 O ATOM 118 N TYR 15 -49.162 -19.885 27.670 1.00 0.00 N ATOM 119 CA TYR 15 -47.932 -20.563 27.442 1.00 0.00 C ATOM 120 CB TYR 15 -46.836 -20.252 28.456 1.00 0.00 C ATOM 121 CG TYR 15 -45.605 -19.992 27.629 1.00 0.00 C ATOM 122 CD1 TYR 15 -44.845 -18.849 27.805 1.00 0.00 C ATOM 123 CD2 TYR 15 -45.187 -20.905 26.681 1.00 0.00 C ATOM 124 CE1 TYR 15 -43.713 -18.629 27.044 1.00 0.00 C ATOM 125 CE2 TYR 15 -44.060 -20.697 25.920 1.00 0.00 C ATOM 126 CZ TYR 15 -43.319 -19.557 26.102 1.00 0.00 C ATOM 127 OH TYR 15 -42.166 -19.363 25.314 1.00 0.00 H ATOM 128 C TYR 15 -48.189 -22.018 27.427 1.00 0.00 C ATOM 129 O TYR 15 -49.347 -22.361 27.633 1.00 0.00 O ATOM 130 N THR 16 -47.157 -22.877 27.141 1.00 0.00 N ATOM 131 CA THR 16 -47.501 -24.242 26.851 1.00 0.00 C ATOM 132 CB THR 16 -48.632 -24.166 25.790 1.00 0.00 C ATOM 133 OG1 THR 16 -49.838 -24.848 26.080 1.00 0.00 O ATOM 134 CG2 THR 16 -48.184 -24.088 24.342 1.00 0.00 C ATOM 135 C THR 16 -46.299 -25.153 26.521 1.00 0.00 C ATOM 136 O THR 16 -45.540 -24.911 25.584 1.00 0.00 O ATOM 137 N VAL 17 -46.185 -26.259 27.320 1.00 0.00 N ATOM 138 CA VAL 17 -45.618 -27.608 27.357 1.00 0.00 C ATOM 139 CB VAL 17 -46.047 -28.464 28.526 1.00 0.00 C ATOM 140 CG1 VAL 17 -47.029 -29.584 28.130 1.00 0.00 C ATOM 141 CG2 VAL 17 -44.761 -29.040 29.135 1.00 0.00 C ATOM 142 C VAL 17 -45.598 -28.549 26.140 1.00 0.00 C ATOM 143 O VAL 17 -46.572 -28.966 25.524 1.00 0.00 O ATOM 144 N THR 18 -44.404 -29.043 25.791 1.00 0.00 N ATOM 145 CA THR 18 -44.208 -29.589 24.475 1.00 0.00 C ATOM 146 CB THR 18 -43.208 -28.664 23.905 1.00 0.00 C ATOM 147 OG1 THR 18 -43.550 -27.318 24.201 1.00 0.00 O ATOM 148 CG2 THR 18 -43.052 -28.925 22.394 1.00 0.00 C ATOM 149 C THR 18 -43.638 -30.968 24.660 1.00 0.00 C ATOM 150 O THR 18 -44.308 -31.849 25.198 1.00 0.00 O ATOM 151 N ASP 19 -42.377 -31.208 24.231 1.00 0.00 N ATOM 152 CA ASP 19 -41.824 -32.497 24.520 1.00 0.00 C ATOM 153 CB ASP 19 -40.992 -33.152 23.376 1.00 0.00 C ATOM 154 CG ASP 19 -41.353 -34.636 23.391 1.00 0.00 C ATOM 155 OD1 ASP 19 -42.227 -35.005 24.223 1.00 0.00 O ATOM 156 OD2 ASP 19 -40.785 -35.408 22.571 1.00 0.00 O ATOM 157 C ASP 19 -41.113 -32.394 25.838 1.00 0.00 C ATOM 158 O ASP 19 -41.152 -33.330 26.633 1.00 0.00 O ATOM 159 N ILE 20 -40.502 -31.227 26.145 1.00 0.00 N ATOM 160 CA ILE 20 -40.098 -30.986 27.511 1.00 0.00 C ATOM 161 CB ILE 20 -38.993 -31.880 28.000 1.00 0.00 C ATOM 162 CG2 ILE 20 -37.702 -31.346 27.357 1.00 0.00 C ATOM 163 CG1 ILE 20 -38.925 -31.965 29.538 1.00 0.00 C ATOM 164 CD1 ILE 20 -38.036 -33.123 30.001 1.00 0.00 C ATOM 165 C ILE 20 -39.470 -29.612 27.620 1.00 0.00 C ATOM 166 O ILE 20 -38.972 -29.282 28.701 1.00 0.00 O ATOM 167 N LYS 21 -39.468 -28.798 26.526 1.00 0.00 N ATOM 168 CA LYS 21 -39.248 -27.385 26.686 1.00 0.00 C ATOM 169 CB LYS 21 -39.615 -26.612 25.451 1.00 0.00 C ATOM 170 CG LYS 21 -39.246 -27.314 24.154 1.00 0.00 C ATOM 171 CD LYS 21 -37.756 -27.642 24.073 1.00 0.00 C ATOM 172 CE LYS 21 -36.877 -26.431 23.750 1.00 0.00 C ATOM 173 NZ LYS 21 -37.284 -25.836 22.460 1.00 0.00 N ATOM 174 C LYS 21 -40.262 -27.101 27.759 1.00 0.00 C ATOM 175 O LYS 21 -41.454 -27.345 27.564 1.00 0.00 O ATOM 176 N ASP 22 -39.764 -26.722 28.963 1.00 0.00 N ATOM 177 CA ASP 22 -40.370 -26.863 30.278 1.00 0.00 C ATOM 178 CB ASP 22 -39.487 -26.240 31.377 1.00 0.00 C ATOM 179 CG ASP 22 -38.066 -26.788 31.254 1.00 0.00 C ATOM 180 OD1 ASP 22 -37.202 -26.297 32.022 1.00 0.00 O ATOM 181 OD2 ASP 22 -37.803 -27.680 30.403 1.00 0.00 O ATOM 182 C ASP 22 -41.672 -26.141 30.299 1.00 0.00 C ATOM 183 O ASP 22 -42.397 -26.209 31.291 1.00 0.00 O ATOM 184 N LEU 23 -41.985 -25.409 29.204 1.00 0.00 N ATOM 185 CA LEU 23 -43.015 -24.418 29.164 1.00 0.00 C ATOM 186 CB LEU 23 -44.312 -24.852 29.892 1.00 0.00 C ATOM 187 CG LEU 23 -45.197 -23.777 30.533 1.00 0.00 C ATOM 188 CD1 LEU 23 -44.645 -23.230 31.845 1.00 0.00 C ATOM 189 CD2 LEU 23 -45.624 -22.733 29.505 1.00 0.00 C ATOM 190 C LEU 23 -42.407 -23.271 29.913 1.00 0.00 C ATOM 191 O LEU 23 -41.477 -23.453 30.693 1.00 0.00 O ATOM 192 N THR 24 -42.890 -22.038 29.699 1.00 0.00 N ATOM 193 CA THR 24 -42.551 -21.003 30.629 1.00 0.00 C ATOM 194 CB THR 24 -41.653 -19.928 30.083 1.00 0.00 C ATOM 195 OG1 THR 24 -41.789 -19.826 28.674 1.00 0.00 O ATOM 196 CG2 THR 24 -40.207 -20.292 30.450 1.00 0.00 C ATOM 197 C THR 24 -43.849 -20.336 31.001 1.00 0.00 C ATOM 198 O THR 24 -44.727 -20.247 30.167 1.00 0.00 O ATOM 199 N LYS 25 -44.090 -19.857 32.237 1.00 0.00 N ATOM 200 CA LYS 25 -45.488 -19.648 32.546 1.00 0.00 C ATOM 201 CB LYS 25 -45.848 -19.962 34.017 1.00 0.00 C ATOM 202 CG LYS 25 -47.094 -20.847 34.150 1.00 0.00 C ATOM 203 CD LYS 25 -47.755 -20.809 35.532 1.00 0.00 C ATOM 204 CE LYS 25 -49.253 -21.108 35.502 1.00 0.00 C ATOM 205 NZ LYS 25 -49.724 -21.577 36.827 1.00 0.00 N ATOM 206 C LYS 25 -45.976 -18.289 32.130 1.00 0.00 C ATOM 207 O LYS 25 -46.904 -18.195 31.324 1.00 0.00 O ATOM 208 N LEU 26 -45.393 -17.201 32.687 1.00 0.00 N ATOM 209 CA LEU 26 -46.098 -15.951 32.850 1.00 0.00 C ATOM 210 CB LEU 26 -45.348 -14.777 33.532 1.00 0.00 C ATOM 211 CG LEU 26 -46.332 -13.721 34.068 1.00 0.00 C ATOM 212 CD1 LEU 26 -47.766 -14.271 34.125 1.00 0.00 C ATOM 213 CD2 LEU 26 -45.861 -13.135 35.406 1.00 0.00 C ATOM 214 C LEU 26 -46.577 -15.333 31.559 1.00 0.00 C ATOM 215 O LEU 26 -47.748 -14.991 31.452 1.00 0.00 O ATOM 216 N GLY 27 -45.712 -15.053 30.566 1.00 0.00 N ATOM 217 CA GLY 27 -46.190 -14.174 29.528 1.00 0.00 C ATOM 218 C GLY 27 -45.876 -14.763 28.208 1.00 0.00 C ATOM 219 O GLY 27 -45.467 -15.918 28.123 1.00 0.00 O ATOM 220 N ALA 28 -46.046 -13.943 27.150 1.00 0.00 N ATOM 221 CA ALA 28 -45.774 -14.324 25.797 1.00 0.00 C ATOM 222 CB ALA 28 -44.618 -15.323 25.606 1.00 0.00 C ATOM 223 C ALA 28 -46.974 -15.009 25.233 1.00 0.00 C ATOM 224 O ALA 28 -47.729 -14.392 24.485 1.00 0.00 O ATOM 225 N ILE 29 -47.133 -16.315 25.573 1.00 0.00 N ATOM 226 CA ILE 29 -48.380 -17.003 25.776 1.00 0.00 C ATOM 227 CB ILE 29 -48.484 -18.305 25.036 1.00 0.00 C ATOM 228 CG2 ILE 29 -49.151 -18.037 23.679 1.00 0.00 C ATOM 229 CG1 ILE 29 -47.127 -19.014 24.939 1.00 0.00 C ATOM 230 CD1 ILE 29 -46.392 -18.734 23.630 1.00 0.00 C ATOM 231 C ILE 29 -48.334 -17.235 27.243 1.00 0.00 C ATOM 232 O ILE 29 -47.312 -17.659 27.765 1.00 0.00 O ATOM 233 N TYR 30 -49.407 -16.915 27.980 1.00 0.00 N ATOM 234 CA TYR 30 -49.396 -17.091 29.398 1.00 0.00 C ATOM 235 CB TYR 30 -49.942 -15.896 30.129 1.00 0.00 C ATOM 236 CG TYR 30 -50.484 -16.251 31.464 1.00 0.00 C ATOM 237 CD1 TYR 30 -51.803 -15.983 31.719 1.00 0.00 C ATOM 238 CD2 TYR 30 -49.692 -16.803 32.447 1.00 0.00 C ATOM 239 CE1 TYR 30 -52.327 -16.292 32.952 1.00 0.00 C ATOM 240 CE2 TYR 30 -50.217 -17.111 33.680 1.00 0.00 C ATOM 241 CZ TYR 30 -51.542 -16.856 33.936 1.00 0.00 C ATOM 242 OH TYR 30 -52.084 -17.172 35.203 1.00 0.00 H ATOM 243 C TYR 30 -50.340 -18.204 29.776 1.00 0.00 C ATOM 244 O TYR 30 -51.554 -18.053 29.671 1.00 0.00 O ATOM 245 N ASP 31 -49.815 -19.360 30.211 1.00 0.00 N ATOM 246 CA ASP 31 -50.489 -20.620 30.028 1.00 0.00 C ATOM 247 CB ASP 31 -49.518 -21.762 30.277 1.00 0.00 C ATOM 248 CG ASP 31 -48.921 -21.617 31.669 1.00 0.00 C ATOM 249 OD1 ASP 31 -49.344 -20.700 32.423 1.00 0.00 O ATOM 250 OD2 ASP 31 -48.031 -22.444 32.004 1.00 0.00 O ATOM 251 C ASP 31 -51.684 -20.705 30.913 1.00 0.00 C ATOM 252 O ASP 31 -51.790 -19.977 31.896 1.00 0.00 O ATOM 253 N LYS 32 -52.629 -21.609 30.565 1.00 0.00 N ATOM 254 CA LYS 32 -53.781 -21.814 31.394 1.00 0.00 C ATOM 255 CB LYS 32 -54.893 -22.664 30.746 1.00 0.00 C ATOM 256 CG LYS 32 -55.863 -21.830 29.904 1.00 0.00 C ATOM 257 CD LYS 32 -55.989 -22.292 28.452 1.00 0.00 C ATOM 258 CE LYS 32 -56.117 -21.140 27.454 1.00 0.00 C ATOM 259 NZ LYS 32 -56.291 -21.680 26.086 1.00 0.00 N ATOM 260 C LYS 32 -53.313 -22.566 32.609 1.00 0.00 C ATOM 261 O LYS 32 -52.781 -21.979 33.551 1.00 0.00 O ATOM 262 N THR 33 -53.530 -23.901 32.628 1.00 0.00 N ATOM 263 CA THR 33 -53.426 -24.621 33.859 1.00 0.00 C ATOM 264 CB THR 33 -54.758 -24.716 34.543 1.00 0.00 C ATOM 265 OG1 THR 33 -55.289 -23.411 34.732 1.00 0.00 O ATOM 266 CG2 THR 33 -54.586 -25.423 35.904 1.00 0.00 C ATOM 267 C THR 33 -52.916 -26.008 33.646 1.00 0.00 C ATOM 268 O THR 33 -51.994 -26.415 34.351 1.00 0.00 O ATOM 269 N LYS 34 -53.533 -26.770 32.711 1.00 0.00 N ATOM 270 CA LYS 34 -53.586 -28.215 32.759 1.00 0.00 C ATOM 271 CB LYS 34 -54.123 -28.907 31.482 1.00 0.00 C ATOM 272 CG LYS 34 -54.554 -30.360 31.710 1.00 0.00 C ATOM 273 CD LYS 34 -54.999 -31.072 30.429 1.00 0.00 C ATOM 274 CE LYS 34 -56.490 -31.416 30.415 1.00 0.00 C ATOM 275 NZ LYS 34 -57.229 -30.468 31.279 1.00 0.00 N ATOM 276 C LYS 34 -52.258 -28.830 33.076 1.00 0.00 C ATOM 277 O LYS 34 -51.197 -28.265 32.822 1.00 0.00 O ATOM 278 N LYS 35 -52.305 -30.046 33.662 1.00 0.00 N ATOM 279 CA LYS 35 -51.148 -30.653 34.254 1.00 0.00 C ATOM 280 CB LYS 35 -51.481 -31.772 35.284 1.00 0.00 C ATOM 281 CG LYS 35 -50.427 -31.852 36.394 1.00 0.00 C ATOM 282 CD LYS 35 -49.898 -30.478 36.830 1.00 0.00 C ATOM 283 CE LYS 35 -48.616 -30.537 37.666 1.00 0.00 C ATOM 284 NZ LYS 35 -47.463 -30.887 36.807 1.00 0.00 N ATOM 285 C LYS 35 -50.299 -31.210 33.159 1.00 0.00 C ATOM 286 O LYS 35 -49.438 -30.520 32.618 1.00 0.00 O ATOM 287 N TYR 36 -50.513 -32.489 32.798 1.00 0.00 N ATOM 288 CA TYR 36 -49.598 -33.143 31.907 1.00 0.00 C ATOM 289 CB TYR 36 -49.637 -32.622 30.452 1.00 0.00 C ATOM 290 CG TYR 36 -49.330 -33.794 29.591 1.00 0.00 C ATOM 291 CD1 TYR 36 -48.470 -33.661 28.527 1.00 0.00 C ATOM 292 CD2 TYR 36 -49.905 -35.016 29.853 1.00 0.00 C ATOM 293 CE1 TYR 36 -48.185 -34.742 27.728 1.00 0.00 C ATOM 294 CE2 TYR 36 -49.623 -36.098 29.057 1.00 0.00 C ATOM 295 CZ TYR 36 -48.763 -35.959 27.994 1.00 0.00 C ATOM 296 OH TYR 36 -48.470 -37.066 27.171 1.00 0.00 H ATOM 297 C TYR 36 -48.226 -32.995 32.480 1.00 0.00 C ATOM 298 O TYR 36 -47.854 -33.715 33.405 1.00 0.00 O ATOM 299 N TRP 37 -47.425 -32.063 31.932 1.00 0.00 N ATOM 300 CA TRP 37 -46.064 -31.948 32.376 1.00 0.00 C ATOM 301 CB TRP 37 -45.036 -32.306 31.281 1.00 0.00 C ATOM 302 CG TRP 37 -43.736 -32.825 31.830 1.00 0.00 C ATOM 303 CD2 TRP 37 -43.593 -34.078 32.510 1.00 0.00 C ATOM 304 CD1 TRP 37 -42.502 -32.249 31.815 1.00 0.00 C ATOM 305 NE1 TRP 37 -41.593 -33.074 32.433 1.00 0.00 N ATOM 306 CE2 TRP 37 -42.254 -34.202 32.870 1.00 0.00 C ATOM 307 CE3 TRP 37 -44.504 -35.050 32.804 1.00 0.00 C ATOM 308 CZ2 TRP 37 -41.806 -35.304 33.540 1.00 0.00 C ATOM 309 CZ3 TRP 37 -44.049 -36.157 33.483 1.00 0.00 C ATOM 310 CH2 TRP 37 -42.725 -36.283 33.847 1.00 0.00 H ATOM 311 C TRP 37 -45.807 -30.519 32.695 1.00 0.00 C ATOM 312 O TRP 37 -44.661 -30.092 32.829 1.00 0.00 O ATOM 313 N VAL 38 -46.901 -29.763 32.805 1.00 0.00 N ATOM 314 CA VAL 38 -46.930 -28.341 32.861 1.00 0.00 C ATOM 315 CB VAL 38 -46.554 -27.663 34.136 1.00 0.00 C ATOM 316 CG1 VAL 38 -47.853 -27.396 34.923 1.00 0.00 C ATOM 317 CG2 VAL 38 -45.542 -28.527 34.900 1.00 0.00 C ATOM 318 C VAL 38 -46.139 -27.631 31.664 1.00 0.00 C ATOM 319 O VAL 38 -44.936 -27.890 31.630 1.00 0.00 O ATOM 320 N TYR 39 -46.595 -26.710 30.651 1.00 0.00 N ATOM 321 CA TYR 39 -47.806 -26.097 29.992 1.00 0.00 C ATOM 322 CB TYR 39 -47.893 -24.591 29.755 1.00 0.00 C ATOM 323 CG TYR 39 -49.389 -24.678 29.914 1.00 0.00 C ATOM 324 CD1 TYR 39 -49.965 -24.939 31.139 1.00 0.00 C ATOM 325 CD2 TYR 39 -50.248 -24.585 28.853 1.00 0.00 C ATOM 326 CE1 TYR 39 -51.330 -25.070 31.289 1.00 0.00 C ATOM 327 CE2 TYR 39 -51.603 -24.708 28.969 1.00 0.00 C ATOM 328 CZ TYR 39 -52.153 -24.954 30.193 1.00 0.00 C ATOM 329 OH TYR 39 -53.555 -25.088 30.281 1.00 0.00 H ATOM 330 C TYR 39 -48.514 -26.985 28.962 1.00 0.00 C ATOM 331 O TYR 39 -48.936 -28.076 29.341 1.00 0.00 O ATOM 332 N GLN 40 -48.685 -26.585 27.667 1.00 0.00 N ATOM 333 CA GLN 40 -48.565 -27.514 26.549 1.00 0.00 C ATOM 334 CB GLN 40 -49.840 -28.282 26.507 1.00 0.00 C ATOM 335 CG GLN 40 -49.909 -29.391 25.458 1.00 0.00 C ATOM 336 CD GLN 40 -51.314 -29.978 25.570 1.00 0.00 C ATOM 337 OE1 GLN 40 -51.657 -30.616 26.565 1.00 0.00 O ATOM 338 NE2 GLN 40 -52.150 -29.757 24.520 1.00 0.00 N ATOM 339 C GLN 40 -48.437 -26.987 25.086 1.00 0.00 C ATOM 340 O GLN 40 -49.475 -26.819 24.449 1.00 0.00 O ATOM 341 N GLY 41 -47.239 -26.749 24.448 1.00 0.00 N ATOM 342 CA GLY 41 -47.241 -26.455 23.024 1.00 0.00 C ATOM 343 C GLY 41 -45.890 -26.218 22.414 1.00 0.00 C ATOM 344 O GLY 41 -45.132 -27.157 22.199 1.00 0.00 O ATOM 345 N LYS 42 -45.612 -24.956 22.008 1.00 0.00 N ATOM 346 CA LYS 42 -44.499 -24.631 21.148 1.00 0.00 C ATOM 347 CB LYS 42 -44.741 -23.379 20.282 1.00 0.00 C ATOM 348 CG LYS 42 -45.140 -22.161 21.120 1.00 0.00 C ATOM 349 CD LYS 42 -44.795 -20.819 20.478 1.00 0.00 C ATOM 350 CE LYS 42 -44.121 -19.855 21.452 1.00 0.00 C ATOM 351 NZ LYS 42 -43.011 -20.555 22.138 1.00 0.00 N ATOM 352 C LYS 42 -43.324 -24.350 22.018 1.00 0.00 C ATOM 353 O LYS 42 -43.452 -24.176 23.231 1.00 0.00 O ATOM 354 N PRO 43 -42.175 -24.321 21.398 1.00 0.00 N ATOM 355 CA PRO 43 -40.950 -24.297 22.134 1.00 0.00 C ATOM 356 CD PRO 43 -42.014 -24.933 20.091 1.00 0.00 C ATOM 357 CB PRO 43 -39.827 -24.666 21.179 1.00 0.00 C ATOM 358 CG PRO 43 -40.536 -25.375 20.008 1.00 0.00 C ATOM 359 C PRO 43 -40.732 -22.992 22.810 1.00 0.00 C ATOM 360 O PRO 43 -40.580 -21.985 22.121 1.00 0.00 O ATOM 361 N VAL 44 -40.663 -23.004 24.156 1.00 0.00 N ATOM 362 CA VAL 44 -40.042 -21.959 24.913 1.00 0.00 C ATOM 363 CB VAL 44 -40.268 -22.172 26.367 1.00 0.00 C ATOM 364 CG1 VAL 44 -39.747 -20.948 27.145 1.00 0.00 C ATOM 365 CG2 VAL 44 -41.763 -22.437 26.588 1.00 0.00 C ATOM 366 C VAL 44 -38.600 -22.084 24.571 1.00 0.00 C ATOM 367 O VAL 44 -38.221 -22.077 23.399 1.00 0.00 O ATOM 368 N MET 45 -37.748 -22.196 25.597 1.00 0.00 N ATOM 369 CA MET 45 -36.351 -22.425 25.419 1.00 0.00 C ATOM 370 CB MET 45 -35.909 -23.304 24.197 1.00 0.00 C ATOM 371 CG MET 45 -34.395 -23.475 24.086 1.00 0.00 C ATOM 372 SD MET 45 -33.617 -24.221 25.549 1.00 0.00 S ATOM 373 CE MET 45 -34.641 -25.722 25.526 1.00 0.00 C ATOM 374 C MET 45 -35.508 -21.154 25.522 1.00 0.00 C ATOM 375 O MET 45 -34.450 -21.289 26.134 1.00 0.00 O ATOM 376 N PRO 46 -35.762 -19.947 25.014 1.00 0.00 N ATOM 377 CA PRO 46 -34.584 -19.243 24.603 1.00 0.00 C ATOM 378 CD PRO 46 -36.847 -19.697 24.080 1.00 0.00 C ATOM 379 CB PRO 46 -34.898 -18.369 23.356 1.00 0.00 C ATOM 380 CG PRO 46 -36.269 -18.895 22.885 1.00 0.00 C ATOM 381 C PRO 46 -33.649 -18.583 25.553 1.00 0.00 C ATOM 382 O PRO 46 -34.056 -17.984 26.546 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.77 33.8 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 90.88 38.2 34 100.0 34 ARMSMC SURFACE . . . . . . . . 90.32 35.7 56 100.0 56 ARMSMC BURIED . . . . . . . . 113.22 25.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.31 37.5 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 86.94 37.9 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 83.15 41.2 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 84.57 40.7 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 89.22 20.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.58 40.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 74.71 47.6 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 75.33 46.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 69.80 45.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 125.45 0.0 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.03 12.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 78.84 14.3 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 102.15 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 76.03 12.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 101.23 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 101.23 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 79.92 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 101.23 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.26 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.26 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2645 CRMSCA SECONDARY STRUCTURE . . 7.46 17 100.0 17 CRMSCA SURFACE . . . . . . . . 9.39 29 100.0 29 CRMSCA BURIED . . . . . . . . 8.57 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.36 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 7.70 85 100.0 85 CRMSMC SURFACE . . . . . . . . 9.46 143 100.0 143 CRMSMC BURIED . . . . . . . . 8.84 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.73 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 11.16 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 10.44 84 100.0 84 CRMSSC SURFACE . . . . . . . . 12.26 127 100.0 127 CRMSSC BURIED . . . . . . . . 9.09 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.64 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 9.29 152 100.0 152 CRMSALL SURFACE . . . . . . . . 10.96 243 100.0 243 CRMSALL BURIED . . . . . . . . 9.05 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.560 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 6.996 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 8.662 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 8.069 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.652 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 7.203 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 8.722 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 8.318 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.927 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 10.514 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 9.773 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 11.473 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 8.537 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.812 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 8.579 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 10.094 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 8.523 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 6 23 35 35 DISTCA CA (P) 0.00 0.00 2.86 17.14 65.71 35 DISTCA CA (RMS) 0.00 0.00 2.92 3.83 6.86 DISTCA ALL (N) 0 0 6 37 164 296 296 DISTALL ALL (P) 0.00 0.00 2.03 12.50 55.41 296 DISTALL ALL (RMS) 0.00 0.00 2.74 3.94 7.12 DISTALL END of the results output