####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 27 ( 220), selected 27 , name T0548TS207_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 27 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS207_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 22 - 37 4.95 7.17 LCS_AVERAGE: 42.33 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 20 - 28 1.99 16.02 LCS_AVERAGE: 18.94 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 20 - 27 0.66 18.05 LCS_AVERAGE: 13.86 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 27 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 20 I 20 8 9 15 6 7 8 8 8 8 8 9 9 10 10 12 14 17 17 17 18 26 27 27 LCS_GDT K 21 K 21 8 9 15 6 7 8 8 8 8 8 9 14 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT D 22 D 22 8 9 16 6 7 8 8 8 10 11 13 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT L 23 L 23 8 9 16 6 7 8 8 8 8 8 12 14 15 18 19 20 23 23 25 25 26 27 27 LCS_GDT T 24 T 24 8 9 16 6 7 8 8 8 8 8 11 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT K 25 K 25 8 9 16 6 7 8 8 8 8 9 12 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT L 26 L 26 8 9 16 4 7 8 8 8 11 12 13 14 16 17 19 20 23 23 25 25 26 27 27 LCS_GDT G 27 G 27 8 9 16 3 7 8 8 8 11 12 13 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT A 28 A 28 3 9 16 3 3 4 5 8 11 12 13 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT I 29 I 29 3 4 16 3 3 3 4 5 6 9 12 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT Y 30 Y 30 3 4 16 3 3 3 5 8 11 12 13 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT D 31 D 31 4 5 16 4 4 6 6 7 11 12 13 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT K 32 K 32 4 5 16 4 4 4 4 5 6 7 9 10 10 12 14 18 21 23 25 25 26 27 27 LCS_GDT T 33 T 33 4 5 16 4 4 4 4 5 6 7 7 8 8 9 12 14 14 15 22 25 26 27 27 LCS_GDT K 34 K 34 4 5 16 4 4 4 4 5 8 10 13 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT K 35 K 35 4 5 16 3 4 6 6 7 11 12 13 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT Y 36 Y 36 4 6 16 3 4 4 5 5 11 12 13 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT W 37 W 37 3 6 16 3 3 4 5 5 6 8 9 12 13 15 19 20 23 23 25 25 26 27 27 LCS_GDT V 38 V 38 3 6 14 3 3 4 4 5 6 8 8 10 13 15 17 20 23 23 25 25 26 27 27 LCS_GDT Y 39 Y 39 3 6 14 3 3 4 5 7 8 8 8 10 11 15 19 20 23 23 25 25 26 27 27 LCS_GDT Q 40 Q 40 3 6 14 3 3 3 5 7 8 8 8 12 15 18 19 20 23 23 25 25 26 27 27 LCS_GDT G 41 G 41 3 6 14 3 3 3 5 8 11 12 13 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT K 42 K 42 3 6 14 3 4 6 6 8 11 12 13 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT P 43 P 43 4 6 11 3 4 4 4 7 8 8 8 10 15 15 18 19 21 22 25 25 26 27 27 LCS_GDT V 44 V 44 4 6 11 3 4 6 6 8 11 12 13 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT M 45 M 45 4 6 11 3 4 6 6 8 11 12 13 15 16 18 19 20 23 23 25 25 26 27 27 LCS_GDT P 46 P 46 4 5 11 3 4 4 5 5 11 12 13 15 16 18 19 20 23 23 25 25 26 27 27 LCS_AVERAGE LCS_A: 25.04 ( 13.86 18.94 42.33 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 7 8 8 8 11 12 13 15 16 18 19 20 23 23 25 25 26 27 27 GDT PERCENT_AT 17.14 20.00 22.86 22.86 22.86 31.43 34.29 37.14 42.86 45.71 51.43 54.29 57.14 65.71 65.71 71.43 71.43 74.29 77.14 77.14 GDT RMS_LOCAL 0.31 0.44 0.66 0.66 0.66 2.44 2.58 2.79 3.37 3.35 3.83 4.00 4.15 4.68 4.68 5.14 5.14 5.52 5.76 5.76 GDT RMS_ALL_AT 18.05 17.70 18.05 18.05 18.05 6.76 6.65 6.42 5.95 6.24 5.88 5.85 5.89 5.95 5.95 5.83 5.83 5.78 5.76 5.76 # Checking swapping # possible swapping detected: D 22 D 22 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 20 I 20 14.139 0 0.052 1.514 18.297 0.000 0.000 LGA K 21 K 21 9.369 0 0.047 0.644 12.543 9.048 4.709 LGA D 22 D 22 3.998 0 0.156 1.083 6.898 45.238 30.298 LGA L 23 L 23 6.305 0 0.028 0.892 12.907 25.952 13.155 LGA T 24 T 24 7.788 0 0.053 1.099 11.887 10.952 6.259 LGA K 25 K 25 6.099 0 0.055 0.833 7.902 18.690 17.989 LGA L 26 L 26 3.752 0 0.100 0.902 8.269 40.238 29.643 LGA G 27 G 27 2.634 0 0.425 0.425 3.514 55.595 55.595 LGA A 28 A 28 2.641 0 0.648 0.682 5.126 45.952 46.762 LGA I 29 I 29 5.568 0 0.639 1.222 10.602 34.762 18.988 LGA Y 30 Y 30 1.848 1 0.605 0.592 3.611 61.429 58.929 LGA D 31 D 31 2.599 0 0.579 0.746 5.095 44.881 45.060 LGA K 32 K 32 9.462 0 0.052 1.223 15.074 2.976 1.323 LGA T 33 T 33 10.969 0 0.133 0.626 14.455 1.071 0.612 LGA K 34 K 34 4.590 0 0.719 1.328 12.197 28.571 19.259 LGA K 35 K 35 3.140 0 0.288 1.096 9.654 59.286 34.921 LGA Y 36 Y 36 2.656 1 0.242 1.286 11.048 49.286 21.270 LGA W 37 W 37 7.313 1 0.260 0.307 16.349 16.190 5.204 LGA V 38 V 38 8.988 0 0.117 0.858 9.859 2.143 1.565 LGA Y 39 Y 39 9.291 1 0.030 0.278 11.956 2.143 0.714 LGA Q 40 Q 40 7.682 0 0.499 0.660 14.273 9.762 4.497 LGA G 41 G 41 2.155 0 0.491 0.491 4.198 52.500 52.500 LGA K 42 K 42 2.402 0 0.552 0.853 3.961 60.476 60.529 LGA P 43 P 43 6.648 0 0.115 0.384 9.176 24.405 15.782 LGA V 44 V 44 1.895 0 0.147 1.193 4.814 53.095 48.299 LGA M 45 M 45 1.817 0 0.216 0.738 9.017 65.476 42.500 LGA P 46 P 46 3.592 0 0.050 0.059 4.756 44.762 47.211 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 27 108 108 100.00 224 220 98.21 35 SUMMARY(RMSD_GDC): 5.758 5.631 7.449 24.711 19.531 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 27 35 4.0 13 2.79 37.857 33.081 0.450 LGA_LOCAL RMSD: 2.791 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.418 Number of assigned atoms: 27 Std_ASGN_ATOMS RMSD: 5.758 Standard rmsd on all 27 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.914375 * X + 0.389774 * Y + 0.109515 * Z + -123.646591 Y_new = -0.404099 * X + 0.861962 * Y + 0.306145 * Z + 17.518044 Z_new = 0.024930 * X + -0.324187 * Y + 0.945665 * Z + 0.649750 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.416131 -0.024932 -0.330258 [DEG: -23.8426 -1.4285 -18.9224 ] ZXZ: 2.798054 0.331164 3.064845 [DEG: 160.3167 18.9743 175.6027 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS207_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS207_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 27 35 4.0 13 2.79 33.081 5.76 REMARK ---------------------------------------------------------- MOLECULE T0548TS207_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 1WJD_A 3L2T_A 1UHS_A 2CXA_A ATOM 72 N ILE 20 -36.414 -6.288 20.977 1.00 0.00 N ATOM 73 CA ILE 20 -36.782 -7.484 20.287 1.00 0.00 C ATOM 74 CB ILE 20 -35.817 -7.858 19.188 1.00 0.00 C ATOM 75 CG2 ILE 20 -35.833 -6.706 18.171 1.00 0.00 C ATOM 76 CG1 ILE 20 -34.406 -8.188 19.708 1.00 0.00 C ATOM 77 CD1 ILE 20 -34.255 -9.597 20.278 1.00 0.00 C ATOM 78 C ILE 20 -36.854 -8.556 21.316 1.00 0.00 C ATOM 79 O ILE 20 -37.738 -9.412 21.289 1.00 0.00 O ATOM 80 N LYS 21 -35.914 -8.504 22.274 1.00 0.00 N ATOM 81 CA LYS 21 -35.813 -9.500 23.289 1.00 0.00 C ATOM 82 CB LYS 21 -34.564 -9.312 24.163 1.00 0.00 C ATOM 83 CG LYS 21 -34.333 -10.441 25.167 1.00 0.00 C ATOM 84 CD LYS 21 -33.880 -11.748 24.515 1.00 0.00 C ATOM 85 CE LYS 21 -33.623 -12.869 25.523 1.00 0.00 C ATOM 86 NZ LYS 21 -33.172 -14.090 24.819 1.00 0.00 N ATOM 87 C LYS 21 -37.045 -9.478 24.146 1.00 0.00 C ATOM 88 O LYS 21 -37.519 -10.538 24.557 1.00 0.00 O ATOM 89 N ASP 22 -37.603 -8.283 24.449 1.00 0.00 N ATOM 90 CA ASP 22 -38.778 -8.266 25.272 1.00 0.00 C ATOM 91 CB ASP 22 -39.454 -6.893 25.395 1.00 0.00 C ATOM 92 CG ASP 22 -38.494 -5.854 25.921 1.00 0.00 C ATOM 93 OD1 ASP 22 -37.723 -6.133 26.878 1.00 0.00 O ATOM 94 OD2 ASP 22 -38.543 -4.739 25.338 1.00 0.00 O ATOM 95 C ASP 22 -39.817 -9.049 24.549 1.00 0.00 C ATOM 96 O ASP 22 -40.335 -10.040 25.057 1.00 0.00 O ATOM 97 N LEU 23 -40.076 -8.669 23.289 1.00 0.00 N ATOM 98 CA LEU 23 -41.201 -9.222 22.594 1.00 0.00 C ATOM 99 CB LEU 23 -41.332 -8.729 21.140 1.00 0.00 C ATOM 100 CG LEU 23 -41.900 -7.305 20.982 1.00 0.00 C ATOM 101 CD1 LEU 23 -41.043 -6.240 21.682 1.00 0.00 C ATOM 102 CD2 LEU 23 -42.155 -6.973 19.503 1.00 0.00 C ATOM 103 C LEU 23 -41.126 -10.705 22.518 1.00 0.00 C ATOM 104 O LEU 23 -42.111 -11.389 22.791 1.00 0.00 O ATOM 105 N THR 24 -39.956 -11.240 22.143 1.00 0.00 N ATOM 106 CA THR 24 -39.853 -12.654 21.963 1.00 0.00 C ATOM 107 CB THR 24 -38.530 -13.077 21.395 1.00 0.00 C ATOM 108 OG1 THR 24 -38.315 -12.446 20.142 1.00 0.00 O ATOM 109 CG2 THR 24 -38.531 -14.605 21.220 1.00 0.00 C ATOM 110 C THR 24 -40.016 -13.360 23.271 1.00 0.00 C ATOM 111 O THR 24 -40.761 -14.331 23.401 1.00 0.00 O ATOM 112 N LYS 25 -39.334 -12.872 24.309 1.00 0.00 N ATOM 113 CA LYS 25 -39.362 -13.642 25.500 1.00 0.00 C ATOM 114 CB LYS 25 -38.412 -13.152 26.601 1.00 0.00 C ATOM 115 CG LYS 25 -36.935 -13.270 26.227 1.00 0.00 C ATOM 116 CD LYS 25 -36.020 -12.666 27.289 1.00 0.00 C ATOM 117 CE LYS 25 -36.720 -11.615 28.150 1.00 0.00 C ATOM 118 NZ LYS 25 -37.283 -10.557 27.282 1.00 0.00 N ATOM 119 C LYS 25 -40.720 -13.658 26.076 1.00 0.00 C ATOM 120 O LYS 25 -41.115 -14.609 26.728 1.00 0.00 O ATOM 121 N LEU 26 -41.441 -12.553 25.943 1.00 0.00 N ATOM 122 CA LEU 26 -42.656 -12.407 26.651 1.00 0.00 C ATOM 123 CB LEU 26 -42.750 -11.034 27.206 1.00 0.00 C ATOM 124 CG LEU 26 -41.637 -10.886 28.271 1.00 0.00 C ATOM 125 CD1 LEU 26 -41.762 -11.968 29.341 1.00 0.00 C ATOM 126 CD2 LEU 26 -40.219 -10.741 27.704 1.00 0.00 C ATOM 127 C LEU 26 -43.981 -12.951 26.160 1.00 0.00 C ATOM 128 O LEU 26 -44.816 -13.203 27.023 1.00 0.00 O ATOM 129 N GLY 27 -44.271 -13.159 24.851 1.00 0.00 N ATOM 130 CA GLY 27 -45.633 -13.517 24.431 1.00 0.00 C ATOM 131 C GLY 27 -46.347 -14.837 24.817 1.00 0.00 C ATOM 132 O GLY 27 -47.293 -14.793 25.592 1.00 0.00 O ATOM 133 N ALA 28 -45.945 -16.043 24.334 1.00 0.00 N ATOM 134 CA ALA 28 -46.289 -17.469 24.484 1.00 0.00 C ATOM 135 CB ALA 28 -45.926 -18.363 23.286 1.00 0.00 C ATOM 136 C ALA 28 -45.946 -18.382 25.688 1.00 0.00 C ATOM 137 O ALA 28 -46.796 -19.157 26.073 1.00 0.00 O ATOM 138 N ILE 29 -44.760 -18.364 26.330 1.00 0.00 N ATOM 139 CA ILE 29 -44.111 -19.156 27.323 1.00 0.00 C ATOM 140 CB ILE 29 -42.848 -18.573 27.897 1.00 0.00 C ATOM 141 CG2 ILE 29 -43.229 -17.557 28.984 1.00 0.00 C ATOM 142 CG1 ILE 29 -41.913 -19.673 28.429 1.00 0.00 C ATOM 143 CD1 ILE 29 -42.309 -20.310 29.760 1.00 0.00 C ATOM 144 C ILE 29 -45.065 -19.346 28.419 1.00 0.00 C ATOM 145 O ILE 29 -44.952 -20.356 29.093 1.00 0.00 O ATOM 146 N TYR 30 -45.918 -18.364 28.744 1.00 0.00 N ATOM 147 CA TYR 30 -46.924 -18.705 29.700 1.00 0.00 C ATOM 148 CB TYR 30 -47.578 -17.563 30.501 1.00 0.00 C ATOM 149 CG TYR 30 -48.753 -18.176 31.218 1.00 0.00 C ATOM 150 CD1 TYR 30 -48.597 -18.906 32.370 1.00 0.00 C ATOM 151 CD2 TYR 30 -50.036 -18.043 30.732 1.00 0.00 C ATOM 152 CE1 TYR 30 -49.700 -19.450 32.994 1.00 0.00 C ATOM 153 CE2 TYR 30 -51.145 -18.575 31.336 1.00 0.00 C ATOM 154 CZ TYR 30 -50.971 -19.297 32.484 1.00 0.00 C ATOM 156 C TYR 30 -48.062 -19.474 29.100 1.00 0.00 C ATOM 157 O TYR 30 -48.526 -20.441 29.685 1.00 0.00 O ATOM 158 N ASP 31 -48.605 -19.095 27.933 1.00 0.00 N ATOM 159 CA ASP 31 -49.782 -19.840 27.596 1.00 0.00 C ATOM 160 CB ASP 31 -51.021 -18.956 27.414 1.00 0.00 C ATOM 161 CG ASP 31 -52.211 -19.901 27.439 1.00 0.00 C ATOM 162 OD1 ASP 31 -52.536 -20.421 28.540 1.00 0.00 O ATOM 163 OD2 ASP 31 -52.802 -20.129 26.352 1.00 0.00 O ATOM 164 C ASP 31 -49.606 -20.639 26.353 1.00 0.00 C ATOM 165 O ASP 31 -49.935 -21.824 26.325 1.00 0.00 O ATOM 166 N LYS 32 -49.109 -20.016 25.276 1.00 0.00 N ATOM 167 CA LYS 32 -48.944 -20.811 24.106 1.00 0.00 C ATOM 168 CB LYS 32 -48.409 -20.011 22.911 1.00 0.00 C ATOM 169 CG LYS 32 -48.377 -20.869 21.653 1.00 0.00 C ATOM 170 CD LYS 32 -49.768 -21.346 21.242 1.00 0.00 C ATOM 171 CE LYS 32 -49.750 -22.390 20.126 1.00 0.00 C ATOM 172 NZ LYS 32 -51.127 -22.861 19.852 1.00 0.00 N ATOM 173 C LYS 32 -47.968 -21.906 24.415 1.00 0.00 C ATOM 174 O LYS 32 -48.231 -23.065 24.109 1.00 0.00 O ATOM 175 N THR 33 -46.829 -21.560 25.045 1.00 0.00 N ATOM 176 CA THR 33 -45.777 -22.485 25.368 1.00 0.00 C ATOM 177 CB THR 33 -44.601 -21.770 25.956 1.00 0.00 C ATOM 178 OG1 THR 33 -44.174 -20.754 25.062 1.00 0.00 O ATOM 179 CG2 THR 33 -43.458 -22.774 26.201 1.00 0.00 C ATOM 180 C THR 33 -46.243 -23.478 26.383 1.00 0.00 C ATOM 181 O THR 33 -46.106 -24.686 26.201 1.00 0.00 O ATOM 182 N LYS 34 -46.831 -22.989 27.487 1.00 0.00 N ATOM 183 CA LYS 34 -47.185 -23.873 28.557 1.00 0.00 C ATOM 184 CB LYS 34 -45.973 -24.740 28.934 1.00 0.00 C ATOM 185 CG LYS 34 -44.723 -23.855 29.055 1.00 0.00 C ATOM 186 CD LYS 34 -43.421 -24.545 29.458 1.00 0.00 C ATOM 187 CE LYS 34 -42.322 -23.554 29.847 1.00 0.00 C ATOM 188 NZ LYS 34 -42.574 -23.052 31.217 1.00 0.00 N ATOM 189 C LYS 34 -47.422 -22.962 29.699 1.00 0.00 C ATOM 190 O LYS 34 -46.620 -22.048 29.853 1.00 0.00 O ATOM 191 N LYS 35 -48.468 -23.189 30.532 1.00 0.00 N ATOM 192 CA LYS 35 -48.751 -22.305 31.636 1.00 0.00 C ATOM 193 CB LYS 35 -49.847 -22.859 32.556 1.00 0.00 C ATOM 194 CG LYS 35 -51.153 -23.139 31.810 1.00 0.00 C ATOM 195 CD LYS 35 -51.038 -24.317 30.838 1.00 0.00 C ATOM 196 CE LYS 35 -52.325 -24.645 30.082 1.00 0.00 C ATOM 197 NZ LYS 35 -52.060 -25.706 29.086 1.00 0.00 N ATOM 198 C LYS 35 -47.482 -22.311 32.383 1.00 0.00 C ATOM 199 O LYS 35 -46.885 -21.265 32.638 1.00 0.00 O ATOM 200 N TYR 36 -47.037 -23.542 32.655 1.00 0.00 N ATOM 201 CA TYR 36 -45.735 -23.865 33.123 1.00 0.00 C ATOM 202 CB TYR 36 -45.687 -23.937 34.652 1.00 0.00 C ATOM 203 CG TYR 36 -46.438 -22.753 35.162 1.00 0.00 C ATOM 204 CD1 TYR 36 -47.808 -22.828 35.280 1.00 0.00 C ATOM 205 CD2 TYR 36 -45.803 -21.586 35.517 1.00 0.00 C ATOM 206 CE1 TYR 36 -48.537 -21.761 35.747 1.00 0.00 C ATOM 207 CE2 TYR 36 -46.527 -20.513 35.985 1.00 0.00 C ATOM 208 CZ TYR 36 -47.896 -20.600 36.103 1.00 0.00 C ATOM 210 C TYR 36 -45.668 -25.291 32.659 1.00 0.00 C ATOM 211 O TYR 36 -46.191 -26.157 33.354 1.00 0.00 O ATOM 212 N TRP 37 -45.012 -25.617 31.523 1.00 0.00 N ATOM 213 CA TRP 37 -45.200 -26.974 31.070 1.00 0.00 C ATOM 214 CB TRP 37 -46.575 -27.218 30.409 1.00 0.00 C ATOM 215 CG TRP 37 -47.776 -27.079 31.318 1.00 0.00 C ATOM 216 CD2 TRP 37 -48.433 -28.165 31.993 1.00 0.00 C ATOM 217 CD1 TRP 37 -48.464 -25.949 31.649 1.00 0.00 C ATOM 218 NE1 TRP 37 -49.511 -26.260 32.483 1.00 0.00 N ATOM 219 CE2 TRP 37 -49.504 -27.621 32.704 1.00 0.00 C ATOM 220 CE3 TRP 37 -48.174 -29.506 32.016 1.00 0.00 C ATOM 221 CZ2 TRP 37 -50.331 -28.411 33.451 1.00 0.00 C ATOM 222 CZ3 TRP 37 -49.008 -30.300 32.774 1.00 0.00 C ATOM 224 C TRP 37 -44.179 -27.372 30.044 1.00 0.00 C ATOM 225 O TRP 37 -42.980 -27.143 30.193 1.00 0.00 O ATOM 226 N VAL 38 -44.678 -28.033 28.974 1.00 0.00 N ATOM 227 CA VAL 38 -43.891 -28.602 27.914 1.00 0.00 C ATOM 228 CB VAL 38 -44.401 -29.948 27.484 1.00 0.00 C ATOM 229 CG1 VAL 38 -45.752 -29.748 26.776 1.00 0.00 C ATOM 230 CG2 VAL 38 -43.331 -30.652 26.631 1.00 0.00 C ATOM 231 C VAL 38 -43.915 -27.695 26.717 1.00 0.00 C ATOM 232 O VAL 38 -44.685 -26.739 26.651 1.00 0.00 O ATOM 233 N TYR 39 -43.030 -27.992 25.742 1.00 0.00 N ATOM 234 CA TYR 39 -42.762 -27.241 24.545 1.00 0.00 C ATOM 235 CB TYR 39 -41.492 -27.755 23.842 1.00 0.00 C ATOM 236 CG TYR 39 -41.338 -27.132 22.498 1.00 0.00 C ATOM 237 CD1 TYR 39 -40.873 -25.847 22.364 1.00 0.00 C ATOM 238 CD2 TYR 39 -41.634 -27.853 21.364 1.00 0.00 C ATOM 239 CE1 TYR 39 -40.722 -25.282 21.119 1.00 0.00 C ATOM 240 CE2 TYR 39 -41.484 -27.294 20.116 1.00 0.00 C ATOM 241 CZ TYR 39 -41.028 -26.003 19.994 1.00 0.00 C ATOM 243 C TYR 39 -43.893 -27.280 23.559 1.00 0.00 C ATOM 244 O TYR 39 -44.492 -28.325 23.308 1.00 0.00 O ATOM 245 N GLN 40 -44.205 -26.082 23.011 1.00 0.00 N ATOM 246 CA GLN 40 -45.177 -25.791 21.988 1.00 0.00 C ATOM 247 CB GLN 40 -46.202 -26.903 21.715 1.00 0.00 C ATOM 248 CG GLN 40 -47.204 -26.528 20.623 1.00 0.00 C ATOM 249 CD GLN 40 -48.163 -27.693 20.434 1.00 0.00 C ATOM 250 OE1 GLN 40 -49.276 -27.693 20.959 1.00 0.00 O ATOM 251 NE2 GLN 40 -47.718 -28.716 19.655 1.00 0.00 N ATOM 252 C GLN 40 -45.921 -24.610 22.499 1.00 0.00 C ATOM 253 O GLN 40 -46.250 -24.582 23.679 1.00 0.00 O ATOM 254 N GLY 41 -46.020 -23.905 21.380 1.00 0.00 N ATOM 255 CA GLY 41 -46.406 -22.784 20.686 1.00 0.00 C ATOM 256 C GLY 41 -45.099 -22.259 20.539 1.00 0.00 C ATOM 257 O GLY 41 -44.743 -21.494 21.406 1.00 0.00 O ATOM 258 N LYS 42 -44.382 -22.777 19.515 1.00 0.00 N ATOM 259 CA LYS 42 -43.029 -22.643 19.016 1.00 0.00 C ATOM 260 CB LYS 42 -42.993 -22.564 17.491 1.00 0.00 C ATOM 261 CG LYS 42 -43.689 -23.795 16.913 1.00 0.00 C ATOM 262 CD LYS 42 -44.021 -23.699 15.426 1.00 0.00 C ATOM 263 CE LYS 42 -43.360 -24.804 14.602 1.00 0.00 C ATOM 264 NZ LYS 42 -43.686 -26.122 15.185 1.00 0.00 N ATOM 265 C LYS 42 -42.168 -21.618 19.695 1.00 0.00 C ATOM 266 O LYS 42 -41.151 -22.060 20.222 1.00 0.00 O ATOM 267 N PRO 43 -42.409 -20.320 19.629 1.00 0.00 N ATOM 268 CA PRO 43 -41.761 -19.354 20.466 1.00 0.00 C ATOM 269 CD PRO 43 -43.723 -19.888 19.184 1.00 0.00 C ATOM 270 CB PRO 43 -42.516 -18.054 20.211 1.00 0.00 C ATOM 271 CG PRO 43 -43.943 -18.539 19.888 1.00 0.00 C ATOM 272 C PRO 43 -41.921 -19.861 21.857 1.00 0.00 C ATOM 273 O PRO 43 -43.053 -19.889 22.335 1.00 0.00 O ATOM 274 N VAL 44 -40.818 -20.246 22.529 1.00 0.00 N ATOM 275 CA VAL 44 -40.937 -20.779 23.854 1.00 0.00 C ATOM 276 CB VAL 44 -41.382 -22.215 23.937 1.00 0.00 C ATOM 277 CG1 VAL 44 -42.777 -22.413 23.345 1.00 0.00 C ATOM 278 CG2 VAL 44 -40.308 -23.065 23.245 1.00 0.00 C ATOM 279 C VAL 44 -39.567 -20.900 24.425 1.00 0.00 C ATOM 280 O VAL 44 -38.560 -20.860 23.718 1.00 0.00 O ATOM 281 N MET 45 -39.526 -21.042 25.758 1.00 0.00 N ATOM 282 CA MET 45 -38.337 -21.379 26.481 1.00 0.00 C ATOM 283 CB MET 45 -37.557 -20.207 27.104 1.00 0.00 C ATOM 284 CG MET 45 -36.785 -19.332 26.115 1.00 0.00 C ATOM 285 SD MET 45 -35.901 -17.950 26.905 1.00 0.00 S ATOM 286 CE MET 45 -34.912 -17.506 25.449 1.00 0.00 C ATOM 287 C MET 45 -38.836 -22.236 27.595 1.00 0.00 C ATOM 288 O MET 45 -40.039 -22.314 27.850 1.00 0.00 O ATOM 289 N PRO 46 -37.920 -22.903 28.229 1.00 0.00 N ATOM 290 CA PRO 46 -38.254 -23.798 29.304 1.00 0.00 C ATOM 291 CD PRO 46 -36.741 -23.350 27.501 1.00 0.00 C ATOM 292 CB PRO 46 -37.032 -24.690 29.498 1.00 0.00 C ATOM 293 CG PRO 46 -36.371 -24.711 28.109 1.00 0.00 C ATOM 294 C PRO 46 -38.649 -23.049 30.527 1.00 0.00 C ATOM 295 O PRO 46 -38.234 -21.907 30.688 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 220 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 75.45 51.9 52 76.5 68 ARMSMC SECONDARY STRUCTURE . . 64.06 70.4 27 79.4 34 ARMSMC SURFACE . . . . . . . . 76.75 52.4 42 75.0 56 ARMSMC BURIED . . . . . . . . 69.72 50.0 10 83.3 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.13 41.7 24 75.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 82.57 45.5 22 75.9 29 ARMSSC1 SECONDARY STRUCTURE . . 78.61 50.0 14 82.4 17 ARMSSC1 SURFACE . . . . . . . . 86.58 40.0 20 74.1 27 ARMSSC1 BURIED . . . . . . . . 77.48 50.0 4 80.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.83 45.0 20 80.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 62.15 50.0 18 85.7 21 ARMSSC2 SECONDARY STRUCTURE . . 73.39 50.0 12 92.3 13 ARMSSC2 SURFACE . . . . . . . . 66.86 44.4 18 81.8 22 ARMSSC2 BURIED . . . . . . . . 75.99 50.0 2 66.7 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.84 50.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 63.34 57.1 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 63.04 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 71.84 50.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.35 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 97.35 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 127.32 0.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 97.35 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.76 (Number of atoms: 27) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.76 27 77.1 35 CRMSCA CRN = ALL/NP . . . . . 0.2133 CRMSCA SECONDARY STRUCTURE . . 6.00 14 82.4 17 CRMSCA SURFACE . . . . . . . . 5.74 22 75.9 29 CRMSCA BURIED . . . . . . . . 5.82 5 83.3 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.96 133 76.9 173 CRMSMC SECONDARY STRUCTURE . . 6.13 70 82.4 85 CRMSMC SURFACE . . . . . . . . 5.99 108 75.5 143 CRMSMC BURIED . . . . . . . . 5.84 25 83.3 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.91 112 71.8 156 CRMSSC RELIABLE SIDE CHAINS . 8.81 102 75.0 136 CRMSSC SECONDARY STRUCTURE . . 9.07 70 83.3 84 CRMSSC SURFACE . . . . . . . . 8.49 92 72.4 127 CRMSSC BURIED . . . . . . . . 10.63 20 69.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.49 220 74.3 296 CRMSALL SECONDARY STRUCTURE . . 7.78 126 82.9 152 CRMSALL SURFACE . . . . . . . . 7.25 180 74.1 243 CRMSALL BURIED . . . . . . . . 8.48 40 75.5 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.270 1.000 0.500 27 77.1 35 ERRCA SECONDARY STRUCTURE . . 5.486 1.000 0.500 14 82.4 17 ERRCA SURFACE . . . . . . . . 5.231 1.000 0.500 22 75.9 29 ERRCA BURIED . . . . . . . . 5.443 1.000 0.500 5 83.3 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.455 1.000 0.500 133 76.9 173 ERRMC SECONDARY STRUCTURE . . 5.580 1.000 0.500 70 82.4 85 ERRMC SURFACE . . . . . . . . 5.464 1.000 0.500 108 75.5 143 ERRMC BURIED . . . . . . . . 5.414 1.000 0.500 25 83.3 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.253 1.000 0.500 112 71.8 156 ERRSC RELIABLE SIDE CHAINS . 8.147 1.000 0.500 102 75.0 136 ERRSC SECONDARY STRUCTURE . . 8.433 1.000 0.500 70 83.3 84 ERRSC SURFACE . . . . . . . . 7.924 1.000 0.500 92 72.4 127 ERRSC BURIED . . . . . . . . 9.766 1.000 0.500 20 69.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.748 1.000 0.500 220 74.3 296 ERRALL SECONDARY STRUCTURE . . 7.010 1.000 0.500 126 82.9 152 ERRALL SURFACE . . . . . . . . 6.583 1.000 0.500 180 74.1 243 ERRALL BURIED . . . . . . . . 7.493 1.000 0.500 40 75.5 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 14 26 27 35 DISTCA CA (P) 0.00 2.86 8.57 40.00 74.29 35 DISTCA CA (RMS) 0.00 1.72 2.26 3.55 5.47 DISTCA ALL (N) 0 5 23 76 183 220 296 DISTALL ALL (P) 0.00 1.69 7.77 25.68 61.82 296 DISTALL ALL (RMS) 0.00 1.57 2.32 3.54 6.10 DISTALL END of the results output