####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS174_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS174_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 14 - 38 4.93 8.02 LCS_AVERAGE: 66.61 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 15 - 31 1.50 7.99 LONGEST_CONTINUOUS_SEGMENT: 17 16 - 32 1.75 7.96 LCS_AVERAGE: 37.31 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 16 - 31 0.95 7.91 LCS_AVERAGE: 27.35 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 3 23 0 3 3 3 3 3 4 4 12 20 21 21 23 24 24 25 25 27 28 28 LCS_GDT F 13 F 13 3 3 24 0 3 3 3 5 5 16 18 20 21 22 23 23 25 26 26 27 27 28 29 LCS_GDT H 14 H 14 3 3 25 0 4 5 5 6 11 16 18 20 21 22 23 23 25 26 26 27 27 28 29 LCS_GDT Y 15 Y 15 3 17 25 0 4 5 6 13 15 18 18 20 21 22 23 23 25 26 26 27 27 28 29 LCS_GDT T 16 T 16 16 17 25 5 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT V 17 V 17 16 17 25 10 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT T 18 T 18 16 17 25 10 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT D 19 D 19 16 17 25 10 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT I 20 I 20 16 17 25 10 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT K 21 K 21 16 17 25 10 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT D 22 D 22 16 17 25 10 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT L 23 L 23 16 17 25 10 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT T 24 T 24 16 17 25 10 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT K 25 K 25 16 17 25 10 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT L 26 L 26 16 17 25 7 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT G 27 G 27 16 17 25 10 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT A 28 A 28 16 17 25 7 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT I 29 I 29 16 17 25 3 5 12 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT Y 30 Y 30 16 17 25 3 11 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT D 31 D 31 16 17 25 3 11 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT K 32 K 32 4 17 25 3 5 5 5 5 13 16 19 20 20 22 23 24 25 26 26 27 27 28 29 LCS_GDT T 33 T 33 4 5 25 3 5 5 5 12 14 15 19 20 20 22 23 24 25 26 26 27 27 28 29 LCS_GDT K 34 K 34 4 11 25 3 5 6 6 10 10 11 12 13 16 20 23 24 24 25 25 26 26 28 29 LCS_GDT K 35 K 35 4 11 25 3 5 6 8 10 10 11 12 13 15 15 18 19 22 24 25 25 26 27 27 LCS_GDT Y 36 Y 36 4 11 25 3 5 6 8 10 10 12 16 18 20 22 23 24 24 25 25 27 27 28 29 LCS_GDT W 37 W 37 4 11 25 3 5 7 8 10 10 11 12 13 16 22 23 24 25 26 26 27 27 28 29 LCS_GDT V 38 V 38 5 11 25 3 5 7 8 10 10 11 12 13 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT Y 39 Y 39 5 11 18 3 5 6 8 10 10 11 12 13 14 15 17 19 21 23 25 25 26 27 29 LCS_GDT Q 40 Q 40 5 11 18 3 4 6 6 9 10 11 12 13 14 15 16 18 19 22 23 24 26 27 27 LCS_GDT G 41 G 41 5 11 18 3 5 6 8 10 10 11 12 13 14 15 16 18 21 23 25 25 26 27 28 LCS_GDT K 42 K 42 5 11 18 3 5 7 8 10 10 11 18 20 21 22 23 23 25 26 26 27 27 28 29 LCS_GDT P 43 P 43 5 11 18 3 5 7 13 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 LCS_GDT V 44 V 44 5 11 18 3 5 7 8 10 10 14 17 20 20 22 23 24 25 26 26 27 27 28 29 LCS_GDT M 45 M 45 4 8 18 3 3 7 7 8 10 11 12 14 19 22 23 23 24 24 25 26 26 27 28 LCS_GDT P 46 P 46 4 8 18 0 5 7 7 8 10 11 12 13 15 16 18 19 21 22 22 24 25 26 26 LCS_AVERAGE LCS_A: 43.76 ( 27.35 37.31 66.61 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 13 14 16 17 17 18 19 20 21 22 23 24 25 26 26 27 27 28 29 GDT PERCENT_AT 28.57 37.14 40.00 45.71 48.57 48.57 51.43 54.29 57.14 60.00 62.86 65.71 68.57 71.43 74.29 74.29 77.14 77.14 80.00 82.86 GDT RMS_LOCAL 0.35 0.54 0.64 0.95 1.16 1.16 1.62 2.29 2.52 2.81 2.99 3.64 3.77 4.03 4.21 4.21 4.54 4.53 4.89 5.27 GDT RMS_ALL_AT 8.18 7.95 7.86 7.91 7.78 7.78 7.83 7.86 7.85 8.00 7.97 8.56 8.03 7.61 7.62 7.62 7.60 7.70 7.62 7.58 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 12.835 0 0.631 1.337 13.237 0.000 0.000 LGA F 13 F 13 9.866 0 0.692 1.440 15.594 0.357 0.130 LGA H 14 H 14 9.658 0 0.613 1.040 10.284 2.619 1.714 LGA Y 15 Y 15 6.555 0 0.644 0.828 16.697 20.952 7.619 LGA T 16 T 16 0.755 0 0.668 0.629 4.241 84.048 69.660 LGA V 17 V 17 0.671 0 0.100 0.128 1.544 92.857 88.027 LGA T 18 T 18 0.306 0 0.041 0.291 1.766 100.000 90.816 LGA D 19 D 19 0.884 0 0.037 0.139 2.570 95.238 81.131 LGA I 20 I 20 0.701 0 0.056 0.635 2.300 90.476 85.000 LGA K 21 K 21 0.819 0 0.070 0.674 2.652 90.595 81.905 LGA D 22 D 22 0.590 0 0.102 0.976 4.099 90.476 74.583 LGA L 23 L 23 0.334 0 0.086 0.113 1.233 100.000 94.107 LGA T 24 T 24 0.949 0 0.087 1.135 3.189 83.810 77.075 LGA K 25 K 25 1.551 0 0.093 0.589 4.045 72.976 62.169 LGA L 26 L 26 1.649 0 0.146 1.331 3.557 72.976 70.298 LGA G 27 G 27 1.888 0 0.332 0.332 3.159 65.119 65.119 LGA A 28 A 28 1.583 0 0.216 0.307 2.429 70.952 73.048 LGA I 29 I 29 2.912 0 0.709 0.596 5.116 54.048 45.774 LGA Y 30 Y 30 3.015 0 0.339 1.039 10.433 47.143 27.579 LGA D 31 D 31 2.316 0 0.354 1.097 5.873 68.929 48.333 LGA K 32 K 32 4.737 0 0.545 1.195 7.979 29.286 19.048 LGA T 33 T 33 5.324 0 0.267 0.607 8.735 19.048 25.170 LGA K 34 K 34 9.807 0 0.029 0.539 15.235 1.905 0.847 LGA K 35 K 35 12.395 0 0.346 1.037 21.789 0.000 0.000 LGA Y 36 Y 36 7.749 0 0.149 1.106 12.214 16.786 7.222 LGA W 37 W 37 6.875 0 0.149 1.192 17.569 16.310 4.694 LGA V 38 V 38 7.446 0 0.346 1.013 11.579 5.833 7.551 LGA Y 39 Y 39 13.355 0 0.194 1.469 22.225 0.000 0.000 LGA Q 40 Q 40 18.499 0 0.365 0.351 26.298 0.000 0.000 LGA G 41 G 41 15.626 0 0.702 0.702 16.090 0.000 0.000 LGA K 42 K 42 9.966 0 0.265 1.165 11.797 5.119 2.275 LGA P 43 P 43 3.163 0 0.128 0.347 7.213 48.333 36.803 LGA V 44 V 44 5.643 0 0.054 0.093 10.316 20.476 13.401 LGA M 45 M 45 10.079 0 0.226 1.057 13.678 1.786 0.893 LGA P 46 P 46 15.956 0 0.156 0.228 17.935 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 7.518 7.400 9.129 41.956 36.057 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 19 2.29 52.857 49.552 0.796 LGA_LOCAL RMSD: 2.287 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.860 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 7.518 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.796844 * X + -0.590159 * Y + -0.129430 * Z + -103.424683 Y_new = -0.011398 * X + 0.199501 * Y + -0.979831 * Z + -42.560139 Z_new = 0.604077 * X + 0.782248 * Y + 0.152245 * Z + 66.713875 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.014303 -0.648608 1.378574 [DEG: -0.8195 -37.1625 78.9865 ] ZXZ: -0.131334 1.417957 0.657579 [DEG: -7.5249 81.2430 37.6765 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS174_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS174_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 19 2.29 49.552 7.52 REMARK ---------------------------------------------------------- MOLECULE T0548TS174_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 87 N HIS 12 -32.137 -21.388 38.568 1.00 0.00 N ATOM 88 CA HIS 12 -32.300 -20.792 37.239 1.00 0.00 C ATOM 89 CB HIS 12 -32.732 -22.265 37.147 1.00 0.00 C ATOM 90 C HIS 12 -33.404 -20.084 37.864 1.00 0.00 C ATOM 91 O HIS 12 -33.620 -19.103 37.156 1.00 0.00 O ATOM 92 CG HIS 12 -31.606 -23.223 37.398 1.00 0.00 C ATOM 93 ND1 HIS 12 -31.775 -24.499 37.896 1.00 0.00 N ATOM 94 CD2 HIS 12 -30.272 -23.091 37.215 1.00 0.00 C ATOM 95 CE1 HIS 12 -30.630 -25.102 38.007 1.00 0.00 C ATOM 96 NE2 HIS 12 -29.689 -24.273 37.601 1.00 0.00 N ATOM 97 N PHE 13 -34.247 -20.419 38.847 1.00 0.00 N ATOM 98 CA PHE 13 -35.409 -19.644 39.097 1.00 0.00 C ATOM 99 CB PHE 13 -36.148 -20.369 40.241 1.00 0.00 C ATOM 100 C PHE 13 -35.288 -18.159 39.195 1.00 0.00 C ATOM 101 O PHE 13 -36.294 -17.469 39.034 1.00 0.00 O ATOM 102 CG PHE 13 -37.440 -19.660 40.461 1.00 0.00 C ATOM 103 CD1 PHE 13 -38.539 -19.819 39.589 1.00 0.00 C ATOM 104 CD2 PHE 13 -37.588 -18.801 41.566 1.00 0.00 C ATOM 105 CE1 PHE 13 -39.772 -19.139 39.810 1.00 0.00 C ATOM 106 CE2 PHE 13 -38.813 -18.108 41.810 1.00 0.00 C ATOM 107 CZ PHE 13 -39.909 -18.277 40.925 1.00 0.00 C ATOM 108 N HIS 14 -34.074 -17.637 39.364 1.00 0.00 N ATOM 109 CA HIS 14 -33.803 -16.209 39.361 1.00 0.00 C ATOM 110 CB HIS 14 -32.352 -15.985 39.769 1.00 0.00 C ATOM 111 C HIS 14 -34.027 -15.624 37.986 1.00 0.00 C ATOM 112 O HIS 14 -34.531 -14.499 37.857 1.00 0.00 O ATOM 113 CG HIS 14 -32.094 -16.297 41.213 1.00 0.00 C ATOM 114 ND1 HIS 14 -32.653 -15.601 42.265 1.00 0.00 N ATOM 115 CD2 HIS 14 -31.326 -17.250 41.791 1.00 0.00 C ATOM 116 CE1 HIS 14 -32.258 -16.091 43.400 1.00 0.00 C ATOM 117 NE2 HIS 14 -31.445 -17.098 43.151 1.00 0.00 N ATOM 118 N TYR 15 -33.713 -16.400 36.949 1.00 0.00 N ATOM 119 CA TYR 15 -33.927 -15.956 35.571 1.00 0.00 C ATOM 120 CB TYR 15 -33.227 -16.949 34.635 1.00 0.00 C ATOM 121 C TYR 15 -35.351 -16.286 35.092 1.00 0.00 C ATOM 122 O TYR 15 -35.698 -15.999 33.946 1.00 0.00 O ATOM 123 CG TYR 15 -31.759 -16.808 34.849 1.00 0.00 C ATOM 124 CD1 TYR 15 -31.086 -17.709 35.684 1.00 0.00 C ATOM 125 CD2 TYR 15 -31.016 -15.783 34.222 1.00 0.00 C ATOM 126 CE1 TYR 15 -29.698 -17.608 35.908 1.00 0.00 C ATOM 127 CE2 TYR 15 -29.605 -15.667 34.439 1.00 0.00 C ATOM 128 CZ TYR 15 -28.964 -16.592 35.288 1.00 0.00 C ATOM 129 OH TYR 15 -27.609 -16.517 35.530 1.00 0.00 O ATOM 130 N THR 16 -36.179 -16.826 35.985 1.00 0.00 N ATOM 131 CA THR 16 -37.559 -17.059 35.762 1.00 0.00 C ATOM 132 CB THR 16 -38.254 -17.960 36.778 1.00 0.00 C ATOM 133 C THR 16 -38.358 -15.788 35.851 1.00 0.00 C ATOM 134 O THR 16 -39.544 -15.660 35.514 1.00 0.00 O ATOM 135 OG1 THR 16 -38.172 -17.386 38.075 1.00 0.00 O ATOM 136 CG2 THR 16 -37.573 -19.338 36.787 1.00 0.00 C ATOM 137 N VAL 17 -37.651 -14.827 36.417 1.00 0.00 N ATOM 138 CA VAL 17 -38.352 -13.407 36.451 1.00 0.00 C ATOM 139 CB VAL 17 -38.046 -12.811 37.864 1.00 0.00 C ATOM 140 C VAL 17 -38.008 -12.522 35.285 1.00 0.00 C ATOM 141 O VAL 17 -38.858 -11.776 34.797 1.00 0.00 O ATOM 142 CG1 VAL 17 -38.561 -11.383 38.049 1.00 0.00 C ATOM 143 CG2 VAL 17 -38.667 -13.611 39.011 1.00 0.00 C ATOM 144 N THR 18 -36.762 -12.597 34.816 1.00 0.00 N ATOM 145 CA THR 18 -36.325 -11.783 33.678 1.00 0.00 C ATOM 146 CB THR 18 -34.936 -11.158 33.962 1.00 0.00 C ATOM 147 C THR 18 -37.028 -12.363 32.401 1.00 0.00 C ATOM 148 O THR 18 -37.613 -11.699 31.559 1.00 0.00 O ATOM 149 OG1 THR 18 -35.010 -10.298 35.090 1.00 0.00 O ATOM 150 CG2 THR 18 -34.481 -10.349 32.736 1.00 0.00 C ATOM 151 N ASP 19 -36.835 -13.677 32.284 1.00 0.00 N ATOM 152 CA ASP 19 -37.402 -14.335 31.077 1.00 0.00 C ATOM 153 CB ASP 19 -37.003 -15.812 31.083 1.00 0.00 C ATOM 154 C ASP 19 -38.876 -14.163 31.057 1.00 0.00 C ATOM 155 O ASP 19 -39.436 -13.836 30.012 1.00 0.00 O ATOM 156 CG ASP 19 -35.521 -15.901 30.749 1.00 0.00 C ATOM 157 OD1 ASP 19 -34.953 -14.869 30.303 1.00 0.00 O ATOM 158 OD2 ASP 19 -34.937 -17.002 30.936 1.00 0.00 O ATOM 159 N ILE 20 -39.523 -14.281 32.215 1.00 0.00 N ATOM 160 CA ILE 20 -40.970 -14.035 32.348 1.00 0.00 C ATOM 161 CB ILE 20 -41.402 -14.032 33.806 1.00 0.00 C ATOM 162 C ILE 20 -41.446 -12.672 31.641 1.00 0.00 C ATOM 163 O ILE 20 -42.490 -12.587 31.000 1.00 0.00 O ATOM 164 CG1 ILE 20 -41.238 -15.397 34.497 1.00 0.00 C ATOM 165 CG2 ILE 20 -42.879 -13.655 34.007 1.00 0.00 C ATOM 166 CD1 ILE 20 -42.128 -16.490 33.908 1.00 0.00 C ATOM 167 N LYS 21 -40.627 -11.645 31.827 1.00 0.00 N ATOM 168 CA LYS 21 -40.920 -10.387 31.284 1.00 0.00 C ATOM 169 CB LYS 21 -40.106 -9.290 31.969 1.00 0.00 C ATOM 170 C LYS 21 -40.729 -10.326 29.873 1.00 0.00 C ATOM 171 O LYS 21 -41.648 -9.944 29.139 1.00 0.00 O ATOM 172 CG LYS 21 -40.419 -7.885 31.450 1.00 0.00 C ATOM 173 CD LYS 21 -39.668 -6.777 32.191 1.00 0.00 C ATOM 174 CE LYS 21 -39.955 -5.375 31.651 1.00 0.00 C ATOM 175 NZ LYS 21 -39.149 -4.375 32.385 1.00 0.00 N ATOM 176 N ASP 22 -39.553 -10.744 29.405 1.00 0.00 N ATOM 177 CA ASP 22 -39.228 -10.762 27.903 1.00 0.00 C ATOM 178 CB ASP 22 -37.888 -11.447 27.629 1.00 0.00 C ATOM 179 C ASP 22 -40.396 -11.485 27.163 1.00 0.00 C ATOM 180 O ASP 22 -40.922 -10.945 26.193 1.00 0.00 O ATOM 181 CG ASP 22 -37.543 -11.236 26.162 1.00 0.00 C ATOM 182 OD1 ASP 22 -38.323 -10.532 25.466 1.00 0.00 O ATOM 183 OD2 ASP 22 -36.495 -11.776 25.718 1.00 0.00 O ATOM 184 N LEU 23 -40.795 -12.657 27.640 1.00 0.00 N ATOM 185 CA LEU 23 -41.838 -13.415 27.133 1.00 0.00 C ATOM 186 CB LEU 23 -41.896 -14.734 27.882 1.00 0.00 C ATOM 187 C LEU 23 -43.083 -12.674 27.045 1.00 0.00 C ATOM 188 O LEU 23 -43.612 -12.519 25.939 1.00 0.00 O ATOM 189 CG LEU 23 -40.767 -15.697 27.513 1.00 0.00 C ATOM 190 CD1 LEU 23 -40.629 -16.914 28.427 1.00 0.00 C ATOM 191 CD2 LEU 23 -40.873 -16.312 26.118 1.00 0.00 C ATOM 192 N THR 24 -43.596 -12.174 28.169 1.00 0.00 N ATOM 193 CA THR 24 -44.851 -11.367 28.211 1.00 0.00 C ATOM 194 CB THR 24 -45.059 -10.774 29.619 1.00 0.00 C ATOM 195 C THR 24 -44.827 -10.297 27.081 1.00 0.00 C ATOM 196 O THR 24 -45.769 -10.260 26.296 1.00 0.00 O ATOM 197 OG1 THR 24 -45.176 -11.817 30.575 1.00 0.00 O ATOM 198 CG2 THR 24 -46.343 -9.927 29.630 1.00 0.00 C ATOM 199 N LYS 25 -43.775 -9.490 26.961 1.00 0.00 N ATOM 200 CA LYS 25 -43.619 -8.584 25.935 1.00 0.00 C ATOM 201 CB LYS 25 -42.357 -7.742 26.042 1.00 0.00 C ATOM 202 C LYS 25 -43.824 -9.115 24.521 1.00 0.00 C ATOM 203 O LYS 25 -44.405 -8.448 23.671 1.00 0.00 O ATOM 204 CG LYS 25 -42.210 -6.718 24.915 1.00 0.00 C ATOM 205 CD LYS 25 -40.981 -5.819 25.060 1.00 0.00 C ATOM 206 CE LYS 25 -40.816 -4.816 23.917 1.00 0.00 C ATOM 207 NZ LYS 25 -39.611 -3.987 24.139 1.00 0.00 N ATOM 208 N LEU 26 -43.387 -10.349 24.297 1.00 0.00 N ATOM 209 CA LEU 26 -43.504 -11.006 23.008 1.00 0.00 C ATOM 210 CB LEU 26 -42.512 -12.153 22.929 1.00 0.00 C ATOM 211 C LEU 26 -44.795 -11.872 22.951 1.00 0.00 C ATOM 212 O LEU 26 -44.970 -12.604 21.984 1.00 0.00 O ATOM 213 CG LEU 26 -41.054 -11.707 23.052 1.00 0.00 C ATOM 214 CD1 LEU 26 -40.031 -12.842 23.068 1.00 0.00 C ATOM 215 CD2 LEU 26 -40.559 -10.800 21.926 1.00 0.00 C ATOM 216 N GLY 27 -45.699 -11.728 23.911 1.00 0.00 N ATOM 217 CA GLY 27 -46.934 -12.462 23.757 1.00 0.00 C ATOM 218 C GLY 27 -47.080 -13.705 24.723 1.00 0.00 C ATOM 219 O GLY 27 -48.102 -13.877 25.377 1.00 0.00 O ATOM 220 N ALA 28 -46.103 -14.595 24.693 1.00 0.00 N ATOM 221 CA ALA 28 -46.143 -15.738 25.511 1.00 0.00 C ATOM 222 CB ALA 28 -44.776 -16.404 25.574 1.00 0.00 C ATOM 223 C ALA 28 -46.519 -15.779 27.051 1.00 0.00 C ATOM 224 O ALA 28 -45.784 -15.084 27.736 1.00 0.00 O ATOM 225 N ILE 29 -47.499 -16.460 27.585 1.00 0.00 N ATOM 226 CA ILE 29 -47.720 -16.440 28.897 1.00 0.00 C ATOM 227 CB ILE 29 -49.168 -15.983 29.123 1.00 0.00 C ATOM 228 C ILE 29 -47.308 -17.587 29.692 1.00 0.00 C ATOM 229 O ILE 29 -47.320 -17.447 30.919 1.00 0.00 O ATOM 230 CG1 ILE 29 -50.215 -16.950 28.543 1.00 0.00 C ATOM 231 CG2 ILE 29 -49.487 -14.618 28.489 1.00 0.00 C ATOM 232 CD1 ILE 29 -51.648 -16.611 28.949 1.00 0.00 C ATOM 233 N TYR 30 -46.771 -18.654 29.085 1.00 0.00 N ATOM 234 CA TYR 30 -46.126 -19.677 30.087 1.00 0.00 C ATOM 235 CB TYR 30 -45.074 -19.758 31.208 1.00 0.00 C ATOM 236 C TYR 30 -47.159 -20.398 30.965 1.00 0.00 C ATOM 237 O TYR 30 -47.197 -20.331 32.201 1.00 0.00 O ATOM 238 CG TYR 30 -43.757 -19.397 30.612 1.00 0.00 C ATOM 239 CD1 TYR 30 -43.567 -19.496 29.227 1.00 0.00 C ATOM 240 CD2 TYR 30 -42.682 -18.949 31.411 1.00 0.00 C ATOM 241 CE1 TYR 30 -42.338 -19.161 28.627 1.00 0.00 C ATOM 242 CE2 TYR 30 -41.425 -18.604 30.816 1.00 0.00 C ATOM 243 CZ TYR 30 -41.274 -18.717 29.419 1.00 0.00 C ATOM 244 OH TYR 30 -40.081 -18.402 28.804 1.00 0.00 O ATOM 245 N ASP 31 -48.026 -21.082 30.241 1.00 0.00 N ATOM 246 CA ASP 31 -49.163 -21.796 30.938 1.00 0.00 C ATOM 247 CB ASP 31 -49.169 -21.701 32.478 1.00 0.00 C ATOM 248 C ASP 31 -50.336 -20.670 30.826 1.00 0.00 C ATOM 249 O ASP 31 -51.306 -20.472 31.553 1.00 0.00 O ATOM 250 CG ASP 31 -50.175 -22.712 33.009 1.00 0.00 C ATOM 251 OD1 ASP 31 -50.740 -23.475 32.180 1.00 0.00 O ATOM 252 OD2 ASP 31 -50.392 -22.736 34.250 1.00 0.00 O ATOM 253 N LYS 32 -50.251 -20.115 29.625 1.00 0.00 N ATOM 254 CA LYS 32 -51.343 -19.610 28.721 1.00 0.00 C ATOM 255 CB LYS 32 -50.885 -19.328 27.270 1.00 0.00 C ATOM 256 C LYS 32 -52.578 -20.411 28.292 1.00 0.00 C ATOM 257 O LYS 32 -52.757 -20.642 27.101 1.00 0.00 O ATOM 258 CG LYS 32 -51.992 -18.762 26.379 1.00 0.00 C ATOM 259 CD LYS 32 -52.391 -17.328 26.734 1.00 0.00 C ATOM 260 CE LYS 32 -53.426 -16.726 25.781 1.00 0.00 C ATOM 261 NZ LYS 32 -53.765 -15.349 26.206 1.00 0.00 N ATOM 262 N THR 33 -53.433 -20.814 29.214 1.00 0.00 N ATOM 263 CA THR 33 -54.591 -21.579 28.800 1.00 0.00 C ATOM 264 CB THR 33 -55.668 -21.464 29.899 1.00 0.00 C ATOM 265 C THR 33 -55.526 -21.198 27.641 1.00 0.00 C ATOM 266 O THR 33 -56.678 -21.641 27.612 1.00 0.00 O ATOM 267 OG1 THR 33 -56.045 -20.106 30.073 1.00 0.00 O ATOM 268 CG2 THR 33 -55.106 -22.009 31.223 1.00 0.00 C ATOM 269 N LYS 34 -55.060 -20.360 26.722 1.00 0.00 N ATOM 270 CA LYS 34 -55.906 -19.944 25.633 1.00 0.00 C ATOM 271 CB LYS 34 -56.380 -18.495 25.850 1.00 0.00 C ATOM 272 C LYS 34 -55.465 -20.365 24.250 1.00 0.00 C ATOM 273 O LYS 34 -56.261 -20.339 23.297 1.00 0.00 O ATOM 274 CG LYS 34 -57.262 -18.320 27.088 1.00 0.00 C ATOM 275 CD LYS 34 -57.730 -16.881 27.308 1.00 0.00 C ATOM 276 CE LYS 34 -58.571 -16.697 28.572 1.00 0.00 C ATOM 277 NZ LYS 34 -58.953 -15.274 28.724 1.00 0.00 N ATOM 278 N LYS 35 -54.228 -20.850 24.147 1.00 0.00 N ATOM 279 CA LYS 35 -53.655 -21.287 22.883 1.00 0.00 C ATOM 280 CB LYS 35 -53.273 -20.081 22.011 1.00 0.00 C ATOM 281 C LYS 35 -52.290 -21.939 23.369 1.00 0.00 C ATOM 282 O LYS 35 -52.034 -23.152 23.344 1.00 0.00 O ATOM 283 CG LYS 35 -52.709 -20.471 20.643 1.00 0.00 C ATOM 284 CD LYS 35 -53.756 -21.061 19.695 1.00 0.00 C ATOM 285 CE LYS 35 -53.214 -21.363 18.296 1.00 0.00 C ATOM 286 NZ LYS 35 -54.284 -21.943 17.454 1.00 0.00 N ATOM 287 N TYR 36 -51.445 -21.000 24.092 1.00 0.00 N ATOM 288 CA TYR 36 -50.206 -21.479 24.466 1.00 0.00 C ATOM 289 CB TYR 36 -49.669 -20.457 25.475 1.00 0.00 C ATOM 290 C TYR 36 -50.398 -22.429 25.574 1.00 0.00 C ATOM 291 O TYR 36 -50.924 -22.092 26.627 1.00 0.00 O ATOM 292 CG TYR 36 -49.385 -19.199 24.729 1.00 0.00 C ATOM 293 CD1 TYR 36 -50.306 -18.144 24.765 1.00 0.00 C ATOM 294 CD2 TYR 36 -48.197 -19.034 23.983 1.00 0.00 C ATOM 295 CE1 TYR 36 -50.071 -16.938 24.076 1.00 0.00 C ATOM 296 CE2 TYR 36 -47.942 -17.814 23.276 1.00 0.00 C ATOM 297 CZ TYR 36 -48.894 -16.777 23.336 1.00 0.00 C ATOM 298 OH TYR 36 -48.695 -15.588 22.668 1.00 0.00 O ATOM 299 N TRP 37 -49.944 -23.658 25.358 1.00 0.00 N ATOM 300 CA TRP 37 -50.184 -24.822 26.275 1.00 0.00 C ATOM 301 CB TRP 37 -51.293 -25.748 25.756 1.00 0.00 C ATOM 302 C TRP 37 -48.959 -25.833 26.436 1.00 0.00 C ATOM 303 O TRP 37 -48.083 -26.180 25.666 1.00 0.00 O ATOM 304 CG TRP 37 -51.535 -26.961 26.622 1.00 0.00 C ATOM 305 CD1 TRP 37 -52.328 -27.093 27.726 1.00 0.00 C ATOM 306 CD2 TRP 37 -50.961 -28.267 26.460 1.00 0.00 C ATOM 307 NE1 TRP 37 -52.315 -28.302 28.253 1.00 0.00 N ATOM 308 CE2 TRP 37 -51.475 -29.082 27.502 1.00 0.00 C ATOM 309 CE3 TRP 37 -50.062 -28.833 25.532 1.00 0.00 C ATOM 310 CZ2 TRP 37 -51.115 -30.450 27.647 1.00 0.00 C ATOM 311 CZ3 TRP 37 -49.696 -30.205 25.671 1.00 0.00 C ATOM 312 CH2 TRP 37 -50.228 -30.990 26.725 1.00 0.00 C ATOM 313 N VAL 38 -48.900 -26.077 27.735 1.00 0.00 N ATOM 314 CA VAL 38 -47.578 -26.875 28.128 1.00 0.00 C ATOM 315 CB VAL 38 -46.197 -26.328 28.490 1.00 0.00 C ATOM 316 C VAL 38 -47.550 -27.225 29.511 1.00 0.00 C ATOM 317 O VAL 38 -48.541 -27.871 29.835 1.00 0.00 O ATOM 318 CG1 VAL 38 -46.181 -25.524 29.791 1.00 0.00 C ATOM 319 CG2 VAL 38 -45.140 -27.418 28.679 1.00 0.00 C ATOM 320 N TYR 39 -46.665 -26.779 30.391 1.00 0.00 N ATOM 321 CA TYR 39 -46.395 -27.082 31.732 1.00 0.00 C ATOM 322 CB TYR 39 -45.112 -27.929 31.663 1.00 0.00 C ATOM 323 C TYR 39 -46.607 -26.005 32.864 1.00 0.00 C ATOM 324 O TYR 39 -47.107 -24.886 32.638 1.00 0.00 O ATOM 325 CG TYR 39 -45.443 -29.185 30.934 1.00 0.00 C ATOM 326 CD1 TYR 39 -45.198 -29.277 29.558 1.00 0.00 C ATOM 327 CD2 TYR 39 -45.999 -30.301 31.598 1.00 0.00 C ATOM 328 CE1 TYR 39 -45.495 -30.449 28.834 1.00 0.00 C ATOM 329 CE2 TYR 39 -46.306 -31.501 30.877 1.00 0.00 C ATOM 330 CZ TYR 39 -46.046 -31.553 29.493 1.00 0.00 C ATOM 331 OH TYR 39 -46.330 -32.684 28.757 1.00 0.00 O ATOM 332 N GLN 40 -46.322 -26.460 34.093 1.00 0.00 N ATOM 333 CA GLN 40 -46.391 -25.551 35.209 1.00 0.00 C ATOM 334 CB GLN 40 -46.064 -26.478 36.376 1.00 0.00 C ATOM 335 C GLN 40 -45.413 -24.463 34.969 1.00 0.00 C ATOM 336 O GLN 40 -45.694 -23.329 35.391 1.00 0.00 O ATOM 337 CG GLN 40 -47.175 -27.483 36.687 1.00 0.00 C ATOM 338 CD GLN 40 -46.704 -28.363 37.836 1.00 0.00 C ATOM 339 OE1 GLN 40 -45.618 -28.170 38.378 1.00 0.00 O ATOM 340 NE2 GLN 40 -47.499 -29.378 38.271 1.00 0.00 N ATOM 341 N GLY 41 -44.382 -24.768 34.164 1.00 0.00 N ATOM 342 CA GLY 41 -43.290 -23.906 33.754 1.00 0.00 C ATOM 343 C GLY 41 -42.902 -24.873 32.514 1.00 0.00 C ATOM 344 O GLY 41 -43.031 -26.088 32.576 1.00 0.00 O ATOM 345 N LYS 42 -42.471 -24.255 31.421 1.00 0.00 N ATOM 346 CA LYS 42 -42.171 -25.146 30.341 1.00 0.00 C ATOM 347 CB LYS 42 -41.705 -26.595 30.184 1.00 0.00 C ATOM 348 C LYS 42 -43.318 -24.843 29.299 1.00 0.00 C ATOM 349 O LYS 42 -44.385 -25.456 29.303 1.00 0.00 O ATOM 350 CG LYS 42 -41.477 -27.008 28.729 1.00 0.00 C ATOM 351 CD LYS 42 -40.940 -28.432 28.573 1.00 0.00 C ATOM 352 CE LYS 42 -40.721 -28.849 27.117 1.00 0.00 C ATOM 353 NZ LYS 42 -40.196 -30.231 27.060 1.00 0.00 N ATOM 354 N PRO 43 -43.070 -23.853 28.437 1.00 0.00 N ATOM 355 CA PRO 43 -43.999 -23.573 27.404 1.00 0.00 C ATOM 356 CB PRO 43 -43.634 -22.123 27.120 1.00 0.00 C ATOM 357 C PRO 43 -43.975 -24.240 26.110 1.00 0.00 C ATOM 358 O PRO 43 -42.942 -24.547 25.530 1.00 0.00 O ATOM 359 CG PRO 43 -42.151 -21.814 27.334 1.00 0.00 C ATOM 360 CD PRO 43 -41.524 -22.595 28.491 1.00 0.00 C ATOM 361 N VAL 44 -45.192 -24.454 25.617 1.00 0.00 N ATOM 362 CA VAL 44 -45.469 -25.041 24.221 1.00 0.00 C ATOM 363 CB VAL 44 -46.272 -26.359 24.212 1.00 0.00 C ATOM 364 C VAL 44 -46.204 -23.892 23.375 1.00 0.00 C ATOM 365 O VAL 44 -47.247 -23.401 23.802 1.00 0.00 O ATOM 366 CG1 VAL 44 -46.563 -26.888 22.805 1.00 0.00 C ATOM 367 CG2 VAL 44 -45.565 -27.509 24.933 1.00 0.00 C ATOM 368 N MET 45 -45.683 -23.534 22.211 1.00 0.00 N ATOM 369 CA MET 45 -46.140 -22.654 21.342 1.00 0.00 C ATOM 370 CB MET 45 -45.293 -21.390 21.367 1.00 0.00 C ATOM 371 C MET 45 -46.141 -22.998 19.902 1.00 0.00 C ATOM 372 O MET 45 -45.807 -24.123 19.534 1.00 0.00 O ATOM 373 CG MET 45 -45.335 -20.655 22.708 1.00 0.00 C ATOM 374 SD MET 45 -44.368 -19.116 22.754 1.00 0.00 S ATOM 375 CE MET 45 -45.480 -18.197 21.652 1.00 0.00 C ATOM 376 N PRO 46 -46.825 -22.165 19.126 1.00 0.00 N ATOM 377 CA PRO 46 -47.054 -22.287 17.672 1.00 0.00 C ATOM 378 CB PRO 46 -48.061 -21.215 17.273 1.00 0.00 C ATOM 379 C PRO 46 -45.810 -22.377 16.980 1.00 0.00 C ATOM 380 O PRO 46 -45.041 -21.482 17.355 1.00 0.00 O ATOM 381 CG PRO 46 -48.972 -20.777 18.421 1.00 0.00 C ATOM 382 CD PRO 46 -48.269 -20.730 19.778 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 74.64 48.5 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 60.20 61.8 34 100.0 34 ARMSMC SURFACE . . . . . . . . 77.41 48.2 56 100.0 56 ARMSMC BURIED . . . . . . . . 60.04 50.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.74 40.6 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 82.83 37.9 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 80.32 47.1 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 83.28 37.0 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 65.30 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 54.15 60.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 51.59 61.9 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 55.48 69.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 54.98 59.1 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 47.59 66.7 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.83 75.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 65.73 71.4 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 80.70 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 61.83 75.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 53.00 83.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 53.00 83.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 91.69 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 53.00 83.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.52 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.52 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2148 CRMSCA SECONDARY STRUCTURE . . 4.65 17 100.0 17 CRMSCA SURFACE . . . . . . . . 7.95 29 100.0 29 CRMSCA BURIED . . . . . . . . 4.95 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.55 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 4.72 85 100.0 85 CRMSMC SURFACE . . . . . . . . 7.91 143 100.0 143 CRMSMC BURIED . . . . . . . . 5.57 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.45 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 10.49 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 8.53 84 100.0 84 CRMSSC SURFACE . . . . . . . . 10.30 127 100.0 127 CRMSSC BURIED . . . . . . . . 11.08 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.14 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 7.06 152 100.0 152 CRMSALL SURFACE . . . . . . . . 9.17 243 100.0 243 CRMSALL BURIED . . . . . . . . 8.96 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.055 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 3.732 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 6.400 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 4.390 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.116 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 3.790 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 6.388 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 4.821 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.830 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 8.877 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 6.779 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 8.608 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 9.805 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.487 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 5.404 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 7.485 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 7.495 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 5 15 17 27 35 35 DISTCA CA (P) 0.00 14.29 42.86 48.57 77.14 35 DISTCA CA (RMS) 0.00 1.51 2.19 2.38 4.67 DISTCA ALL (N) 2 34 86 123 207 296 296 DISTALL ALL (P) 0.68 11.49 29.05 41.55 69.93 296 DISTALL ALL (RMS) 0.91 1.51 2.16 2.85 5.31 DISTALL END of the results output