####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS171_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS171_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 4.89 4.89 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 33 - 46 1.95 7.18 LCS_AVERAGE: 26.04 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 27 - 32 0.92 10.82 LONGEST_CONTINUOUS_SEGMENT: 6 34 - 39 0.79 7.34 LONGEST_CONTINUOUS_SEGMENT: 6 41 - 46 0.96 7.97 LCS_AVERAGE: 14.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 3 35 0 3 3 3 3 3 4 5 6 14 15 20 26 27 33 33 35 35 35 35 LCS_GDT F 13 F 13 3 3 35 0 3 3 3 3 3 6 14 17 23 26 29 31 32 34 34 35 35 35 35 LCS_GDT H 14 H 14 3 3 35 1 3 3 3 3 5 6 8 16 23 26 29 31 32 34 34 35 35 35 35 LCS_GDT Y 15 Y 15 3 3 35 0 3 3 3 4 7 12 18 22 24 26 29 31 32 34 34 35 35 35 35 LCS_GDT T 16 T 16 3 3 35 3 3 3 3 4 5 10 11 13 19 25 29 31 32 34 34 35 35 35 35 LCS_GDT V 17 V 17 3 4 35 3 3 3 6 7 11 13 18 21 23 26 29 31 32 34 34 35 35 35 35 LCS_GDT T 18 T 18 3 4 35 3 3 3 4 7 7 10 11 13 22 25 27 30 32 34 34 35 35 35 35 LCS_GDT D 19 D 19 3 4 35 3 3 3 3 5 6 9 18 21 23 26 29 31 32 34 34 35 35 35 35 LCS_GDT I 20 I 20 3 4 35 1 3 3 3 5 9 12 15 21 24 27 29 31 32 34 34 35 35 35 35 LCS_GDT K 21 K 21 5 5 35 4 5 7 7 10 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT D 22 D 22 5 5 35 4 4 4 5 8 11 16 22 23 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT L 23 L 23 5 5 35 4 4 4 5 5 5 6 8 11 16 27 27 31 32 34 34 35 35 35 35 LCS_GDT T 24 T 24 5 5 35 4 4 4 5 5 9 16 17 24 25 27 27 31 32 34 34 35 35 35 35 LCS_GDT K 25 K 25 5 9 35 3 3 3 7 8 15 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT L 26 L 26 3 9 35 3 4 8 11 12 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT G 27 G 27 6 9 35 3 6 7 7 10 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT A 28 A 28 6 9 35 3 6 7 7 10 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT I 29 I 29 6 9 35 3 6 7 7 10 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT Y 30 Y 30 6 9 35 3 6 7 7 10 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT D 31 D 31 6 9 35 3 5 7 7 10 15 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT K 32 K 32 6 9 35 3 6 7 7 10 15 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT T 33 T 33 5 14 35 3 6 7 7 11 15 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT K 34 K 34 6 14 35 6 8 11 12 12 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT K 35 K 35 6 14 35 6 8 11 12 12 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT Y 36 Y 36 6 14 35 6 8 11 12 12 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT W 37 W 37 6 14 35 6 8 11 12 12 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT V 38 V 38 6 14 35 5 8 11 12 12 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT Y 39 Y 39 6 14 35 3 6 11 12 12 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT Q 40 Q 40 5 14 35 3 4 6 8 9 13 14 17 24 25 27 27 30 32 34 34 35 35 35 35 LCS_GDT G 41 G 41 6 14 35 4 7 11 12 12 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT K 42 K 42 6 14 35 6 8 11 12 12 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT P 43 P 43 6 14 35 6 8 11 12 12 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT V 44 V 44 6 14 35 6 8 11 12 12 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT M 45 M 45 6 14 35 3 4 11 12 12 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 LCS_GDT P 46 P 46 6 14 35 3 4 10 12 12 14 17 22 24 25 27 27 30 32 34 34 35 35 35 35 LCS_AVERAGE LCS_A: 46.72 ( 14.12 26.04 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 8 11 12 12 16 21 22 24 25 27 29 31 32 34 34 35 35 35 35 GDT PERCENT_AT 17.14 22.86 31.43 34.29 34.29 45.71 60.00 62.86 68.57 71.43 77.14 82.86 88.57 91.43 97.14 97.14 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.33 0.46 0.94 1.06 1.06 2.33 2.64 2.74 3.01 3.09 3.46 4.16 4.44 4.44 4.70 4.70 4.89 4.89 4.89 4.89 GDT RMS_ALL_AT 7.26 7.65 7.11 7.43 7.43 5.72 5.72 5.77 5.97 5.91 5.76 4.90 4.91 4.93 4.90 4.90 4.89 4.89 4.89 4.89 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 15 Y 15 # possible swapping detected: D 19 D 19 # possible swapping detected: Y 30 Y 30 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 12.034 0 0.635 1.458 13.613 0.000 0.000 LGA F 13 F 13 10.565 0 0.603 1.389 18.396 0.000 0.000 LGA H 14 H 14 10.935 0 0.598 1.410 12.016 0.000 0.429 LGA Y 15 Y 15 7.948 0 0.596 1.474 11.661 4.286 5.000 LGA T 16 T 16 9.619 0 0.599 1.024 12.471 1.786 1.020 LGA V 17 V 17 8.762 0 0.124 0.234 9.691 1.667 3.946 LGA T 18 T 18 10.993 0 0.401 1.219 15.344 0.000 0.000 LGA D 19 D 19 9.671 0 0.572 1.285 10.279 5.595 2.798 LGA I 20 I 20 6.987 0 0.611 0.757 11.851 19.524 10.298 LGA K 21 K 21 2.520 0 0.621 0.946 9.486 53.690 39.894 LGA D 22 D 22 4.603 0 0.087 1.047 6.643 33.095 26.250 LGA L 23 L 23 6.903 0 0.110 0.353 10.729 16.310 8.929 LGA T 24 T 24 5.640 0 0.616 0.568 6.739 27.857 26.190 LGA K 25 K 25 3.697 0 0.088 1.294 8.477 63.095 32.804 LGA L 26 L 26 3.319 0 0.665 1.350 9.838 61.429 35.952 LGA G 27 G 27 3.218 0 0.187 0.187 3.547 48.333 48.333 LGA A 28 A 28 3.396 0 0.064 0.090 3.672 55.476 53.048 LGA I 29 I 29 2.819 0 0.613 1.464 4.649 48.929 48.274 LGA Y 30 Y 30 3.000 0 0.285 1.290 13.920 53.690 23.571 LGA D 31 D 31 3.221 0 0.346 0.977 7.365 48.571 33.571 LGA K 32 K 32 3.412 0 0.569 1.411 6.362 57.262 44.021 LGA T 33 T 33 3.383 0 0.678 0.927 5.044 45.119 40.204 LGA K 34 K 34 2.311 0 0.195 1.068 6.323 64.762 49.577 LGA K 35 K 35 2.528 0 0.176 0.515 3.364 57.262 59.788 LGA Y 36 Y 36 2.272 0 0.093 1.325 8.287 64.762 45.675 LGA W 37 W 37 2.540 0 0.109 1.173 10.410 62.857 33.571 LGA V 38 V 38 2.255 0 0.137 1.268 5.155 59.167 57.347 LGA Y 39 Y 39 2.940 0 0.130 0.221 6.282 52.143 41.429 LGA Q 40 Q 40 5.120 0 0.412 1.185 12.654 39.167 18.836 LGA G 41 G 41 0.465 0 0.084 0.084 2.175 82.024 82.024 LGA K 42 K 42 1.131 0 0.111 0.854 8.092 88.214 60.000 LGA P 43 P 43 0.449 0 0.030 0.161 0.917 95.238 93.197 LGA V 44 V 44 1.190 0 0.060 0.073 1.838 79.405 79.048 LGA M 45 M 45 2.390 0 0.159 0.265 3.520 57.738 57.560 LGA P 46 P 46 3.968 0 0.055 0.063 4.289 41.905 42.585 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 4.886 4.771 6.373 42.582 34.433 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 22 2.74 54.286 48.841 0.775 LGA_LOCAL RMSD: 2.738 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.766 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 4.886 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.020955 * X + -0.009715 * Y + 0.999733 * Z + 22.425884 Y_new = -0.840036 * X + 0.542390 * Y + -0.012337 * Z + -90.302269 Z_new = -0.542126 * X + -0.840071 * Y + -0.019526 * Z + 6.117739 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.595737 0.572965 -1.594036 [DEG: -91.4290 32.8284 -91.3315 ] ZXZ: 1.558456 1.590324 -2.568505 [DEG: 89.2930 91.1189 -147.1645 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS171_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS171_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 22 2.74 48.841 4.89 REMARK ---------------------------------------------------------- MOLECULE T0548TS171_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3l2q_A ATOM 16 N HIS 12 -39.280 -17.055 34.768 1.00 0.00 N ATOM 17 CA HIS 12 -40.451 -17.346 34.000 1.00 0.00 C ATOM 18 ND1 HIS 12 -38.280 -19.798 33.429 1.00 0.00 N ATOM 19 CG HIS 12 -39.486 -19.385 32.907 1.00 0.00 C ATOM 20 CB HIS 12 -40.612 -18.843 33.731 1.00 0.00 C ATOM 21 NE2 HIS 12 -38.165 -20.125 31.234 1.00 0.00 N ATOM 22 CD2 HIS 12 -39.395 -19.591 31.563 1.00 0.00 C ATOM 23 CE1 HIS 12 -37.529 -20.232 32.388 1.00 0.00 C ATOM 24 C HIS 12 -41.679 -16.860 34.688 1.00 0.00 C ATOM 25 O HIS 12 -42.661 -16.533 34.027 1.00 0.00 O ATOM 26 N PHE 13 -41.675 -16.822 36.032 1.00 0.00 N ATOM 27 CA PHE 13 -42.854 -16.426 36.750 1.00 0.00 C ATOM 28 CB PHE 13 -42.693 -16.497 38.277 1.00 0.00 C ATOM 29 CG PHE 13 -43.992 -16.077 38.881 1.00 0.00 C ATOM 30 CD1 PHE 13 -45.008 -16.988 39.066 1.00 0.00 C ATOM 31 CD2 PHE 13 -44.198 -14.769 39.262 1.00 0.00 C ATOM 32 CE1 PHE 13 -46.206 -16.610 39.628 1.00 0.00 C ATOM 33 CE2 PHE 13 -45.398 -14.386 39.824 1.00 0.00 C ATOM 34 CZ PHE 13 -46.406 -15.305 40.006 1.00 0.00 C ATOM 35 C PHE 13 -43.187 -15.008 36.397 1.00 0.00 C ATOM 36 O PHE 13 -44.353 -14.661 36.212 1.00 0.00 O ATOM 37 N HIS 14 -42.166 -14.148 36.268 1.00 0.00 N ATOM 38 CA HIS 14 -42.414 -12.757 36.031 1.00 0.00 C ATOM 39 ND1 HIS 14 -39.895 -12.772 38.002 1.00 0.00 N ATOM 40 CG HIS 14 -40.441 -11.752 37.255 1.00 0.00 C ATOM 41 CB HIS 14 -41.116 -11.937 35.926 1.00 0.00 C ATOM 42 NE2 HIS 14 -39.581 -10.898 39.157 1.00 0.00 N ATOM 43 CD2 HIS 14 -40.241 -10.614 37.973 1.00 0.00 C ATOM 44 CE1 HIS 14 -39.395 -12.204 39.131 1.00 0.00 C ATOM 45 C HIS 14 -43.184 -12.577 34.758 1.00 0.00 C ATOM 46 O HIS 14 -44.111 -11.772 34.703 1.00 0.00 O ATOM 47 N TYR 15 -42.840 -13.337 33.702 1.00 0.00 N ATOM 48 CA TYR 15 -43.476 -13.159 32.429 1.00 0.00 C ATOM 49 CB TYR 15 -42.916 -14.032 31.290 1.00 0.00 C ATOM 50 CG TYR 15 -43.423 -13.377 30.048 1.00 0.00 C ATOM 51 CD1 TYR 15 -44.680 -13.633 29.552 1.00 0.00 C ATOM 52 CD2 TYR 15 -42.638 -12.459 29.386 1.00 0.00 C ATOM 53 CE1 TYR 15 -45.113 -12.988 28.416 1.00 0.00 C ATOM 54 CE2 TYR 15 -43.074 -11.821 28.248 1.00 0.00 C ATOM 55 CZ TYR 15 -44.325 -12.085 27.757 1.00 0.00 C ATOM 56 OH TYR 15 -44.810 -11.447 26.594 1.00 0.00 O ATOM 57 C TYR 15 -44.940 -13.478 32.517 1.00 0.00 C ATOM 58 O TYR 15 -45.758 -12.787 31.918 1.00 0.00 O ATOM 59 N THR 16 -45.324 -14.529 33.267 1.00 0.00 N ATOM 60 CA THR 16 -46.714 -14.909 33.303 1.00 0.00 C ATOM 61 CB THR 16 -47.011 -16.083 34.195 1.00 0.00 C ATOM 62 OG1 THR 16 -48.336 -16.536 33.960 1.00 0.00 O ATOM 63 CG2 THR 16 -46.850 -15.660 35.668 1.00 0.00 C ATOM 64 C THR 16 -47.499 -13.743 33.819 1.00 0.00 C ATOM 65 O THR 16 -48.622 -13.497 33.380 1.00 0.00 O ATOM 66 N VAL 17 -46.890 -12.990 34.756 1.00 0.00 N ATOM 67 CA VAL 17 -47.446 -11.837 35.407 1.00 0.00 C ATOM 68 CB VAL 17 -46.502 -11.200 36.391 1.00 0.00 C ATOM 69 CG1 VAL 17 -47.154 -9.920 36.942 1.00 0.00 C ATOM 70 CG2 VAL 17 -46.137 -12.228 37.477 1.00 0.00 C ATOM 71 C VAL 17 -47.735 -10.809 34.362 1.00 0.00 C ATOM 72 O VAL 17 -48.571 -9.937 34.580 1.00 0.00 O ATOM 73 N THR 18 -47.056 -10.922 33.201 1.00 0.00 N ATOM 74 CA THR 18 -47.062 -10.055 32.052 1.00 0.00 C ATOM 75 CB THR 18 -48.418 -9.652 31.513 1.00 0.00 C ATOM 76 OG1 THR 18 -49.077 -8.736 32.375 1.00 0.00 O ATOM 77 CG2 THR 18 -49.273 -10.920 31.328 1.00 0.00 C ATOM 78 C THR 18 -46.290 -8.815 32.348 1.00 0.00 C ATOM 79 O THR 18 -46.631 -7.730 31.880 1.00 0.00 O ATOM 80 N ASP 19 -45.206 -8.951 33.140 1.00 0.00 N ATOM 81 CA ASP 19 -44.352 -7.827 33.381 1.00 0.00 C ATOM 82 CB ASP 19 -43.449 -7.936 34.617 1.00 0.00 C ATOM 83 CG ASP 19 -42.331 -8.912 34.283 1.00 0.00 C ATOM 84 OD1 ASP 19 -42.617 -9.986 33.688 1.00 0.00 O ATOM 85 OD2 ASP 19 -41.161 -8.566 34.595 1.00 0.00 O ATOM 86 C ASP 19 -43.422 -7.801 32.208 1.00 0.00 C ATOM 87 O ASP 19 -43.499 -8.663 31.334 1.00 0.00 O ATOM 88 N ILE 20 -42.490 -6.830 32.183 1.00 0.00 N ATOM 89 CA ILE 20 -41.635 -6.628 31.048 1.00 0.00 C ATOM 90 CB ILE 20 -41.281 -5.183 30.869 1.00 0.00 C ATOM 91 CG2 ILE 20 -40.324 -5.086 29.668 1.00 0.00 C ATOM 92 CG1 ILE 20 -42.540 -4.307 30.771 1.00 0.00 C ATOM 93 CD1 ILE 20 -43.475 -4.674 29.625 1.00 0.00 C ATOM 94 C ILE 20 -40.315 -7.311 31.248 1.00 0.00 C ATOM 95 O ILE 20 -39.694 -7.195 32.305 1.00 0.00 O ATOM 96 N LYS 21 -39.869 -8.070 30.225 1.00 0.00 N ATOM 97 CA LYS 21 -38.552 -8.648 30.217 1.00 0.00 C ATOM 98 CB LYS 21 -38.513 -10.181 30.240 1.00 0.00 C ATOM 99 CG LYS 21 -37.125 -10.706 29.868 1.00 0.00 C ATOM 100 CD LYS 21 -36.924 -12.209 30.054 1.00 0.00 C ATOM 101 CE LYS 21 -36.084 -12.557 31.281 1.00 0.00 C ATOM 102 NZ LYS 21 -35.675 -13.978 31.223 1.00 0.00 N ATOM 103 C LYS 21 -37.931 -8.235 28.914 1.00 0.00 C ATOM 104 O LYS 21 -38.573 -8.306 27.868 1.00 0.00 O ATOM 105 N ASP 22 -36.644 -7.834 28.925 1.00 0.00 N ATOM 106 CA ASP 22 -36.083 -7.313 27.711 1.00 0.00 C ATOM 107 CB ASP 22 -34.605 -6.923 27.815 1.00 0.00 C ATOM 108 CG ASP 22 -34.233 -6.412 26.430 1.00 0.00 C ATOM 109 OD1 ASP 22 -35.140 -5.845 25.765 1.00 0.00 O ATOM 110 OD2 ASP 22 -33.062 -6.604 26.001 1.00 0.00 O ATOM 111 C ASP 22 -36.135 -8.314 26.606 1.00 0.00 C ATOM 112 O ASP 22 -36.573 -8.003 25.502 1.00 0.00 O ATOM 113 N LEU 23 -35.675 -9.547 26.860 1.00 0.00 N ATOM 114 CA LEU 23 -35.629 -10.510 25.801 1.00 0.00 C ATOM 115 CB LEU 23 -34.662 -11.684 26.041 1.00 0.00 C ATOM 116 CG LEU 23 -33.182 -11.251 26.025 1.00 0.00 C ATOM 117 CD1 LEU 23 -32.235 -12.461 26.017 1.00 0.00 C ATOM 118 CD2 LEU 23 -32.901 -10.267 24.878 1.00 0.00 C ATOM 119 C LEU 23 -36.986 -11.016 25.395 1.00 0.00 C ATOM 120 O LEU 23 -37.151 -11.400 24.238 1.00 0.00 O ATOM 121 N THR 24 -37.988 -11.082 26.305 1.00 0.00 N ATOM 122 CA THR 24 -39.259 -11.627 25.883 1.00 0.00 C ATOM 123 CB THR 24 -40.153 -12.081 26.998 1.00 0.00 C ATOM 124 OG1 THR 24 -40.449 -10.991 27.857 1.00 0.00 O ATOM 125 CG2 THR 24 -39.450 -13.203 27.776 1.00 0.00 C ATOM 126 C THR 24 -40.015 -10.605 25.094 1.00 0.00 C ATOM 127 O THR 24 -40.143 -9.449 25.492 1.00 0.00 O ATOM 128 N LYS 25 -40.581 -11.048 23.957 1.00 0.00 N ATOM 129 CA LYS 25 -41.208 -10.184 22.998 1.00 0.00 C ATOM 130 CB LYS 25 -41.605 -10.918 21.708 1.00 0.00 C ATOM 131 CG LYS 25 -40.419 -11.168 20.776 1.00 0.00 C ATOM 132 CD LYS 25 -39.321 -12.039 21.389 1.00 0.00 C ATOM 133 CE LYS 25 -38.157 -12.309 20.432 1.00 0.00 C ATOM 134 NZ LYS 25 -37.562 -11.033 19.974 1.00 0.00 N ATOM 135 C LYS 25 -42.420 -9.475 23.510 1.00 0.00 C ATOM 136 O LYS 25 -42.620 -8.315 23.182 1.00 0.00 O ATOM 137 N LEU 26 -43.307 -10.091 24.300 1.00 0.00 N ATOM 138 CA LEU 26 -44.487 -9.333 24.645 1.00 0.00 C ATOM 139 CB LEU 26 -44.260 -7.966 25.342 1.00 0.00 C ATOM 140 CG LEU 26 -43.751 -8.018 26.798 1.00 0.00 C ATOM 141 CD1 LEU 26 -42.329 -8.590 26.908 1.00 0.00 C ATOM 142 CD2 LEU 26 -43.902 -6.648 27.479 1.00 0.00 C ATOM 143 C LEU 26 -45.306 -9.107 23.402 1.00 0.00 C ATOM 144 O LEU 26 -44.825 -9.177 22.270 1.00 0.00 O ATOM 145 N GLY 27 -46.609 -8.844 23.595 1.00 0.00 N ATOM 146 CA GLY 27 -47.498 -8.718 22.480 1.00 0.00 C ATOM 147 C GLY 27 -48.016 -10.100 22.306 1.00 0.00 C ATOM 148 O GLY 27 -48.999 -10.339 21.606 1.00 0.00 O ATOM 149 N ALA 28 -47.335 -11.045 22.979 1.00 0.00 N ATOM 150 CA ALA 28 -47.738 -12.414 22.988 1.00 0.00 C ATOM 151 CB ALA 28 -46.589 -13.387 22.684 1.00 0.00 C ATOM 152 C ALA 28 -48.216 -12.670 24.391 1.00 0.00 C ATOM 153 O ALA 28 -47.667 -12.128 25.348 1.00 0.00 O ATOM 154 N ILE 29 -49.270 -13.506 24.527 1.00 0.00 N ATOM 155 CA ILE 29 -49.992 -13.779 25.753 1.00 0.00 C ATOM 156 CB ILE 29 -51.207 -14.634 25.538 1.00 0.00 C ATOM 157 CG2 ILE 29 -51.821 -14.947 26.911 1.00 0.00 C ATOM 158 CG1 ILE 29 -52.190 -13.949 24.579 1.00 0.00 C ATOM 159 CD1 ILE 29 -53.254 -14.903 24.037 1.00 0.00 C ATOM 160 C ILE 29 -49.183 -14.480 26.810 1.00 0.00 C ATOM 161 O ILE 29 -49.266 -14.134 27.982 1.00 0.00 O ATOM 162 N TYR 30 -48.393 -15.500 26.448 1.00 0.00 N ATOM 163 CA TYR 30 -47.642 -16.273 27.404 1.00 0.00 C ATOM 164 CB TYR 30 -46.393 -15.568 27.926 1.00 0.00 C ATOM 165 CG TYR 30 -45.473 -15.494 26.757 1.00 0.00 C ATOM 166 CD1 TYR 30 -45.518 -14.437 25.880 1.00 0.00 C ATOM 167 CD2 TYR 30 -44.575 -16.507 26.534 1.00 0.00 C ATOM 168 CE1 TYR 30 -44.669 -14.395 24.798 1.00 0.00 C ATOM 169 CE2 TYR 30 -43.724 -16.471 25.457 1.00 0.00 C ATOM 170 CZ TYR 30 -43.768 -15.411 24.588 1.00 0.00 C ATOM 171 OH TYR 30 -42.894 -15.376 23.481 1.00 0.00 O ATOM 172 C TYR 30 -48.463 -16.739 28.567 1.00 0.00 C ATOM 173 O TYR 30 -48.250 -16.308 29.698 1.00 0.00 O ATOM 174 N ASP 31 -49.454 -17.615 28.307 1.00 0.00 N ATOM 175 CA ASP 31 -50.214 -18.211 29.369 1.00 0.00 C ATOM 176 CB ASP 31 -51.701 -18.450 29.027 1.00 0.00 C ATOM 177 CG ASP 31 -52.450 -17.120 29.117 1.00 0.00 C ATOM 178 OD1 ASP 31 -51.812 -16.088 29.446 1.00 0.00 O ATOM 179 OD2 ASP 31 -53.688 -17.129 28.872 1.00 0.00 O ATOM 180 C ASP 31 -49.572 -19.527 29.679 1.00 0.00 C ATOM 181 O ASP 31 -48.521 -19.857 29.128 1.00 0.00 O ATOM 182 N LYS 32 -50.169 -20.314 30.603 1.00 0.00 N ATOM 183 CA LYS 32 -49.558 -21.578 30.891 1.00 0.00 C ATOM 184 CB LYS 32 -48.749 -21.621 32.205 1.00 0.00 C ATOM 185 CG LYS 32 -49.547 -21.374 33.488 1.00 0.00 C ATOM 186 CD LYS 32 -50.113 -19.959 33.615 1.00 0.00 C ATOM 187 CE LYS 32 -50.808 -19.694 34.955 1.00 0.00 C ATOM 188 NZ LYS 32 -49.856 -19.885 36.078 1.00 0.00 N ATOM 189 C LYS 32 -50.595 -22.650 30.965 1.00 0.00 C ATOM 190 O LYS 32 -51.619 -22.511 31.631 1.00 0.00 O ATOM 191 N THR 33 -50.336 -23.754 30.241 1.00 0.00 N ATOM 192 CA THR 33 -51.164 -24.916 30.245 1.00 0.00 C ATOM 193 CB THR 33 -52.139 -24.943 29.107 1.00 0.00 C ATOM 194 OG1 THR 33 -51.440 -24.886 27.873 1.00 0.00 O ATOM 195 CG2 THR 33 -53.078 -23.731 29.247 1.00 0.00 C ATOM 196 C THR 33 -50.229 -26.075 30.102 1.00 0.00 C ATOM 197 O THR 33 -49.069 -25.919 29.716 1.00 0.00 O ATOM 198 N LYS 34 -50.711 -27.281 30.429 1.00 0.00 N ATOM 199 CA LYS 34 -49.910 -28.462 30.308 1.00 0.00 C ATOM 200 CB LYS 34 -49.462 -28.744 28.860 1.00 0.00 C ATOM 201 CG LYS 34 -49.026 -30.194 28.647 1.00 0.00 C ATOM 202 CD LYS 34 -50.186 -31.189 28.737 1.00 0.00 C ATOM 203 CE LYS 34 -50.826 -31.258 30.125 1.00 0.00 C ATOM 204 NZ LYS 34 -52.034 -32.108 30.088 1.00 0.00 N ATOM 205 C LYS 34 -48.706 -28.329 31.188 1.00 0.00 C ATOM 206 O LYS 34 -47.677 -28.960 30.951 1.00 0.00 O ATOM 207 N LYS 35 -48.824 -27.511 32.252 1.00 0.00 N ATOM 208 CA LYS 35 -47.785 -27.376 33.233 1.00 0.00 C ATOM 209 CB LYS 35 -47.437 -28.725 33.880 1.00 0.00 C ATOM 210 CG LYS 35 -48.605 -29.316 34.670 1.00 0.00 C ATOM 211 CD LYS 35 -48.481 -30.820 34.918 1.00 0.00 C ATOM 212 CE LYS 35 -49.554 -31.379 35.853 1.00 0.00 C ATOM 213 NZ LYS 35 -49.156 -31.141 37.259 1.00 0.00 N ATOM 214 C LYS 35 -46.549 -26.838 32.597 1.00 0.00 C ATOM 215 O LYS 35 -45.446 -27.057 33.096 1.00 0.00 O ATOM 216 N TYR 36 -46.700 -26.118 31.472 1.00 0.00 N ATOM 217 CA TYR 36 -45.565 -25.494 30.861 1.00 0.00 C ATOM 218 CB TYR 36 -45.089 -26.150 29.554 1.00 0.00 C ATOM 219 CG TYR 36 -44.283 -27.349 29.907 1.00 0.00 C ATOM 220 CD1 TYR 36 -44.833 -28.414 30.579 1.00 0.00 C ATOM 221 CD2 TYR 36 -42.964 -27.408 29.523 1.00 0.00 C ATOM 222 CE1 TYR 36 -44.057 -29.511 30.878 1.00 0.00 C ATOM 223 CE2 TYR 36 -42.185 -28.500 29.817 1.00 0.00 C ATOM 224 CZ TYR 36 -42.734 -29.556 30.502 1.00 0.00 C ATOM 225 OH TYR 36 -41.937 -30.682 30.806 1.00 0.00 O ATOM 226 C TYR 36 -45.960 -24.103 30.531 1.00 0.00 C ATOM 227 O TYR 36 -47.133 -23.825 30.286 1.00 0.00 O ATOM 228 N TRP 37 -44.994 -23.169 30.555 1.00 0.00 N ATOM 229 CA TRP 37 -45.385 -21.854 30.170 1.00 0.00 C ATOM 230 CB TRP 37 -44.718 -20.729 30.975 1.00 0.00 C ATOM 231 CG TRP 37 -45.053 -20.838 32.442 1.00 0.00 C ATOM 232 CD2 TRP 37 -44.238 -21.593 33.346 1.00 0.00 C ATOM 233 CD1 TRP 37 -46.094 -20.346 33.174 1.00 0.00 C ATOM 234 NE1 TRP 37 -45.978 -20.758 34.483 1.00 0.00 N ATOM 235 CE2 TRP 37 -44.838 -21.527 34.597 1.00 0.00 C ATOM 236 CE3 TRP 37 -43.084 -22.293 33.138 1.00 0.00 C ATOM 237 CZ2 TRP 37 -44.291 -22.168 35.672 1.00 0.00 C ATOM 238 CZ3 TRP 37 -42.525 -22.928 34.221 1.00 0.00 C ATOM 239 CH2 TRP 37 -43.121 -22.867 35.465 1.00 0.00 C ATOM 240 C TRP 37 -44.968 -21.748 28.754 1.00 0.00 C ATOM 241 O TRP 37 -43.807 -21.965 28.416 1.00 0.00 O ATOM 242 N VAL 38 -45.933 -21.442 27.875 1.00 0.00 N ATOM 243 CA VAL 38 -45.566 -21.417 26.503 1.00 0.00 C ATOM 244 CB VAL 38 -46.005 -22.624 25.738 1.00 0.00 C ATOM 245 CG1 VAL 38 -45.348 -23.864 26.358 1.00 0.00 C ATOM 246 CG2 VAL 38 -47.543 -22.649 25.721 1.00 0.00 C ATOM 247 C VAL 38 -46.259 -20.278 25.865 1.00 0.00 C ATOM 248 O VAL 38 -47.111 -19.619 26.458 1.00 0.00 O ATOM 249 N TYR 39 -45.845 -20.015 24.617 1.00 0.00 N ATOM 250 CA TYR 39 -46.467 -19.071 23.757 1.00 0.00 C ATOM 251 CB TYR 39 -45.505 -18.047 23.137 1.00 0.00 C ATOM 252 CG TYR 39 -46.302 -17.312 22.116 1.00 0.00 C ATOM 253 CD1 TYR 39 -47.328 -16.479 22.495 1.00 0.00 C ATOM 254 CD2 TYR 39 -46.011 -17.451 20.779 1.00 0.00 C ATOM 255 CE1 TYR 39 -48.064 -15.799 21.553 1.00 0.00 C ATOM 256 CE2 TYR 39 -46.743 -16.774 19.833 1.00 0.00 C ATOM 257 CZ TYR 39 -47.773 -15.951 20.217 1.00 0.00 C ATOM 258 OH TYR 39 -48.521 -15.260 19.240 1.00 0.00 O ATOM 259 C TYR 39 -46.994 -19.942 22.672 1.00 0.00 C ATOM 260 O TYR 39 -46.412 -20.983 22.381 1.00 0.00 O ATOM 261 N GLN 40 -48.118 -19.553 22.051 1.00 0.00 N ATOM 262 CA GLN 40 -48.784 -20.419 21.125 1.00 0.00 C ATOM 263 CB GLN 40 -50.006 -19.757 20.463 1.00 0.00 C ATOM 264 CG GLN 40 -50.822 -20.681 19.561 1.00 0.00 C ATOM 265 CD GLN 40 -52.109 -19.947 19.227 1.00 0.00 C ATOM 266 OE1 GLN 40 -53.102 -20.041 19.951 1.00 0.00 O ATOM 267 NE2 GLN 40 -52.089 -19.192 18.098 1.00 0.00 N ATOM 268 C GLN 40 -47.865 -20.886 20.054 1.00 0.00 C ATOM 269 O GLN 40 -47.199 -20.102 19.379 1.00 0.00 O ATOM 270 N GLY 41 -47.820 -22.220 19.904 1.00 0.00 N ATOM 271 CA GLY 41 -47.070 -22.839 18.865 1.00 0.00 C ATOM 272 C GLY 41 -45.673 -23.066 19.325 1.00 0.00 C ATOM 273 O GLY 41 -44.900 -23.655 18.578 1.00 0.00 O ATOM 274 N LYS 42 -45.279 -22.604 20.531 1.00 0.00 N ATOM 275 CA LYS 42 -43.918 -22.880 20.896 1.00 0.00 C ATOM 276 CB LYS 42 -42.947 -21.819 20.350 1.00 0.00 C ATOM 277 CG LYS 42 -42.811 -21.890 18.822 1.00 0.00 C ATOM 278 CD LYS 42 -42.246 -20.635 18.150 1.00 0.00 C ATOM 279 CE LYS 42 -43.285 -19.881 17.314 1.00 0.00 C ATOM 280 NZ LYS 42 -42.626 -18.909 16.412 1.00 0.00 N ATOM 281 C LYS 42 -43.816 -22.952 22.388 1.00 0.00 C ATOM 282 O LYS 42 -44.184 -22.028 23.110 1.00 0.00 O ATOM 283 N PRO 43 -43.335 -24.064 22.867 1.00 0.00 N ATOM 284 CA PRO 43 -43.192 -24.200 24.290 1.00 0.00 C ATOM 285 CD PRO 43 -43.717 -25.320 22.244 1.00 0.00 C ATOM 286 CB PRO 43 -43.115 -25.700 24.566 1.00 0.00 C ATOM 287 CG PRO 43 -43.890 -26.325 23.392 1.00 0.00 C ATOM 288 C PRO 43 -42.001 -23.441 24.772 1.00 0.00 C ATOM 289 O PRO 43 -41.025 -23.332 24.033 1.00 0.00 O ATOM 290 N VAL 44 -42.062 -22.903 26.003 1.00 0.00 N ATOM 291 CA VAL 44 -40.928 -22.221 26.546 1.00 0.00 C ATOM 292 CB VAL 44 -41.270 -20.895 27.154 1.00 0.00 C ATOM 293 CG1 VAL 44 -40.030 -20.341 27.873 1.00 0.00 C ATOM 294 CG2 VAL 44 -41.786 -19.981 26.027 1.00 0.00 C ATOM 295 C VAL 44 -40.405 -23.107 27.621 1.00 0.00 C ATOM 296 O VAL 44 -41.106 -23.438 28.575 1.00 0.00 O ATOM 297 N MET 45 -39.134 -23.514 27.473 1.00 0.00 N ATOM 298 CA MET 45 -38.503 -24.430 28.372 1.00 0.00 C ATOM 299 CB MET 45 -37.282 -25.102 27.711 1.00 0.00 C ATOM 300 CG MET 45 -36.692 -26.303 28.449 1.00 0.00 C ATOM 301 SD MET 45 -35.381 -27.152 27.512 1.00 0.00 S ATOM 302 CE MET 45 -36.445 -27.663 26.129 1.00 0.00 C ATOM 303 C MET 45 -38.047 -23.669 29.569 1.00 0.00 C ATOM 304 O MET 45 -37.872 -22.452 29.533 1.00 0.00 O ATOM 305 N PRO 46 -37.896 -24.377 30.649 1.00 0.00 N ATOM 306 CA PRO 46 -37.401 -23.755 31.847 1.00 0.00 C ATOM 307 CD PRO 46 -38.832 -25.453 30.940 1.00 0.00 C ATOM 308 CB PRO 46 -37.778 -24.691 32.990 1.00 0.00 C ATOM 309 CG PRO 46 -39.022 -25.428 32.463 1.00 0.00 C ATOM 310 C PRO 46 -35.923 -23.547 31.699 1.00 0.00 C ATOM 311 O PRO 46 -35.304 -24.195 30.857 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 88.96 47.1 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 87.67 52.9 34 100.0 34 ARMSMC SURFACE . . . . . . . . 94.80 41.1 56 100.0 56 ARMSMC BURIED . . . . . . . . 53.86 75.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.51 43.8 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 88.29 41.4 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 90.55 41.2 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 89.16 40.7 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 77.99 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.75 56.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 72.19 57.1 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 68.96 61.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 70.70 59.1 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 105.64 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.56 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 74.84 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 100.91 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 74.56 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 99.59 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 99.59 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 130.50 0.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 99.59 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.89 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.89 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.1396 CRMSCA SECONDARY STRUCTURE . . 4.89 17 100.0 17 CRMSCA SURFACE . . . . . . . . 5.01 29 100.0 29 CRMSCA BURIED . . . . . . . . 4.23 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.98 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 4.94 85 100.0 85 CRMSMC SURFACE . . . . . . . . 5.11 143 100.0 143 CRMSMC BURIED . . . . . . . . 4.35 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.58 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 7.45 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 7.55 84 100.0 84 CRMSSC SURFACE . . . . . . . . 7.59 127 100.0 127 CRMSSC BURIED . . . . . . . . 7.54 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.41 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 6.44 152 100.0 152 CRMSALL SURFACE . . . . . . . . 6.44 243 100.0 243 CRMSALL BURIED . . . . . . . . 6.27 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.532 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 4.585 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 4.687 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 3.786 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.592 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 4.605 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 4.741 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 3.881 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.998 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 6.910 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 7.052 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 7.067 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 6.696 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.777 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 5.872 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 5.857 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 5.411 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 9 24 35 35 35 DISTCA CA (P) 0.00 2.86 25.71 68.57 100.00 35 DISTCA CA (RMS) 0.00 1.93 2.42 3.60 4.89 DISTCA ALL (N) 0 13 48 134 269 296 296 DISTALL ALL (P) 0.00 4.39 16.22 45.27 90.88 296 DISTALL ALL (RMS) 0.00 1.70 2.37 3.60 5.57 DISTALL END of the results output