####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS166_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS166_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 16 - 34 4.88 11.59 LCS_AVERAGE: 49.22 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 15 - 27 1.78 17.66 LONGEST_CONTINUOUS_SEGMENT: 13 16 - 28 1.88 15.92 LCS_AVERAGE: 24.24 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 16 - 27 0.42 16.74 LCS_AVERAGE: 19.10 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 3 17 0 3 3 3 3 3 4 5 10 12 14 16 16 17 17 17 17 18 18 18 LCS_GDT F 13 F 13 3 3 17 1 3 3 3 3 3 4 5 9 11 14 16 16 17 17 17 17 18 18 18 LCS_GDT H 14 H 14 3 3 17 1 3 3 3 3 4 6 10 12 13 14 16 16 17 17 17 17 18 18 18 LCS_GDT Y 15 Y 15 3 13 17 0 3 3 4 6 8 12 13 13 13 14 16 16 17 17 17 17 18 19 19 LCS_GDT T 16 T 16 12 13 19 0 12 12 12 12 12 12 13 13 13 14 16 16 17 18 20 22 22 24 25 LCS_GDT V 17 V 17 12 13 19 10 12 12 12 12 12 12 13 13 13 14 16 16 19 21 21 22 24 26 26 LCS_GDT T 18 T 18 12 13 19 6 12 12 12 12 12 12 13 14 14 15 16 18 20 21 23 25 25 26 26 LCS_GDT D 19 D 19 12 13 19 10 12 12 12 12 12 12 13 14 14 15 16 17 20 21 22 25 25 26 26 LCS_GDT I 20 I 20 12 13 19 10 12 12 12 12 12 12 13 14 14 15 16 17 20 21 23 25 25 26 26 LCS_GDT K 21 K 21 12 13 19 10 12 12 12 12 12 12 13 14 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT D 22 D 22 12 13 19 10 12 12 12 12 12 12 13 14 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT L 23 L 23 12 13 19 10 12 12 12 12 12 12 13 14 14 16 17 18 21 21 23 25 25 26 26 LCS_GDT T 24 T 24 12 13 19 10 12 12 12 12 12 12 13 14 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT K 25 K 25 12 13 19 10 12 12 12 12 12 12 13 14 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT L 26 L 26 12 13 19 10 12 12 12 12 12 12 13 13 13 16 17 19 21 21 23 25 25 26 26 LCS_GDT G 27 G 27 12 13 19 10 12 12 12 12 12 12 13 13 13 14 16 18 21 21 23 25 25 26 26 LCS_GDT A 28 A 28 3 13 19 3 3 3 4 5 7 11 12 14 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT I 29 I 29 4 7 19 4 4 5 6 7 8 11 12 14 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT Y 30 Y 30 4 7 19 4 4 5 6 7 9 11 12 14 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT D 31 D 31 4 7 19 4 4 5 6 7 9 11 12 14 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT K 32 K 32 4 7 19 4 4 5 6 7 9 11 12 14 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT T 33 T 33 4 7 19 3 4 5 6 7 9 11 12 14 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT K 34 K 34 4 7 19 3 4 5 5 7 7 11 12 12 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT K 35 K 35 4 7 18 4 4 5 5 6 7 8 9 11 13 14 17 19 20 21 23 25 25 26 26 LCS_GDT Y 36 Y 36 4 6 17 4 4 5 5 5 7 8 9 10 11 12 13 15 19 21 23 23 24 26 26 LCS_GDT W 37 W 37 4 6 14 4 4 4 4 5 6 6 8 9 11 12 13 13 14 15 17 17 19 21 24 LCS_GDT V 38 V 38 4 5 14 4 4 4 4 5 5 6 8 9 10 12 13 13 14 16 17 17 19 22 24 LCS_GDT Y 39 Y 39 4 5 14 0 4 4 4 5 5 6 8 9 11 12 13 14 15 16 18 21 22 24 24 LCS_GDT Q 40 Q 40 5 5 14 0 4 5 5 7 9 9 9 10 11 12 15 18 21 21 23 25 25 26 26 LCS_GDT G 41 G 41 5 5 14 3 4 5 5 7 9 9 9 10 12 15 17 19 21 21 23 25 25 26 26 LCS_GDT K 42 K 42 5 5 14 3 3 5 5 7 9 9 9 12 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT P 43 P 43 5 5 14 3 3 5 5 7 9 9 9 12 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT V 44 V 44 5 5 14 3 3 5 5 7 9 9 10 12 14 16 17 19 21 21 23 25 25 26 26 LCS_GDT M 45 M 45 3 5 14 3 3 3 4 5 5 7 7 8 11 15 17 19 21 21 23 25 25 26 26 LCS_GDT P 46 P 46 3 5 13 3 3 3 4 5 6 7 7 8 10 15 17 19 21 21 23 25 25 26 26 LCS_AVERAGE LCS_A: 30.86 ( 19.10 24.24 49.22 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 12 12 12 12 12 12 13 14 14 16 17 19 21 21 23 25 25 26 26 GDT PERCENT_AT 28.57 34.29 34.29 34.29 34.29 34.29 34.29 37.14 40.00 40.00 45.71 48.57 54.29 60.00 60.00 65.71 71.43 71.43 74.29 74.29 GDT RMS_LOCAL 0.30 0.42 0.42 0.42 0.42 0.42 0.42 1.78 3.39 3.39 4.05 4.26 4.83 5.07 5.02 5.49 5.81 5.81 6.05 6.08 GDT RMS_ALL_AT 16.63 16.74 16.74 16.74 16.74 16.74 16.74 17.66 11.79 11.79 12.18 12.09 12.53 12.43 12.68 11.83 11.78 11.78 11.90 11.51 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 30 Y 30 # possible swapping detected: D 31 D 31 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 15.984 0 0.645 0.687 17.745 0.000 0.000 LGA F 13 F 13 14.403 0 0.623 0.517 22.157 0.000 0.000 LGA H 14 H 14 10.351 0 0.565 1.206 11.549 2.976 1.238 LGA Y 15 Y 15 5.473 0 0.647 1.468 11.334 38.452 14.603 LGA T 16 T 16 1.556 0 0.660 0.934 6.078 75.119 54.422 LGA V 17 V 17 1.071 0 0.595 0.690 3.347 73.571 76.939 LGA T 18 T 18 1.059 0 0.080 1.185 3.293 81.429 73.469 LGA D 19 D 19 0.969 0 0.056 0.085 1.039 88.214 88.214 LGA I 20 I 20 0.704 0 0.037 1.310 3.759 90.476 79.167 LGA K 21 K 21 0.741 0 0.034 0.644 1.410 90.476 88.466 LGA D 22 D 22 0.625 0 0.073 1.111 4.576 95.238 77.143 LGA L 23 L 23 0.838 0 0.049 0.800 4.312 90.476 71.726 LGA T 24 T 24 0.417 0 0.060 0.061 0.596 100.000 95.918 LGA K 25 K 25 0.600 0 0.086 1.337 6.711 90.595 72.540 LGA L 26 L 26 1.116 0 0.129 0.250 2.085 79.524 79.405 LGA G 27 G 27 1.280 0 0.299 0.299 4.882 57.857 57.857 LGA A 28 A 28 8.665 0 0.578 0.580 10.388 6.190 4.952 LGA I 29 I 29 13.325 0 0.582 1.683 18.120 0.000 0.000 LGA Y 30 Y 30 15.838 0 0.051 1.376 22.840 0.000 0.000 LGA D 31 D 31 19.325 0 0.321 1.215 24.117 0.000 0.000 LGA K 32 K 32 20.979 0 0.524 1.580 24.722 0.000 0.000 LGA T 33 T 33 24.120 0 0.098 0.630 27.380 0.000 0.000 LGA K 34 K 34 26.036 0 0.704 0.845 27.647 0.000 0.000 LGA K 35 K 35 29.839 0 0.681 1.409 39.392 0.000 0.000 LGA Y 36 Y 36 29.081 0 0.114 1.441 29.426 0.000 0.000 LGA W 37 W 37 29.083 0 0.143 0.605 29.841 0.000 0.000 LGA V 38 V 38 29.696 0 0.645 0.532 32.592 0.000 0.000 LGA Y 39 Y 39 26.136 0 0.581 0.912 27.392 0.000 0.000 LGA Q 40 Q 40 22.293 0 0.508 0.433 23.021 0.000 0.000 LGA G 41 G 41 23.640 0 0.597 0.597 26.637 0.000 0.000 LGA K 42 K 42 24.181 0 0.116 0.922 26.493 0.000 0.000 LGA P 43 P 43 24.249 0 0.649 0.625 27.530 0.000 0.000 LGA V 44 V 44 21.163 0 0.628 0.545 22.696 0.000 0.000 LGA M 45 M 45 22.302 0 0.094 0.982 27.477 0.000 0.000 LGA P 46 P 46 20.149 0 0.157 0.303 22.634 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 10.708 10.556 12.179 30.303 26.745 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 13 1.78 42.857 36.801 0.692 LGA_LOCAL RMSD: 1.779 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.659 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 10.708 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.820250 * X + 0.557981 * Y + 0.125884 * Z + -145.948181 Y_new = -0.379092 * X + 0.365484 * Y + 0.850124 * Z + -12.845396 Z_new = 0.428345 * X + -0.745036 * Y + 0.511314 * Z + 44.885124 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.432925 -0.442660 -0.969328 [DEG: -24.8048 -25.3625 -55.5384 ] ZXZ: 2.994584 1.034083 2.619810 [DEG: 171.5770 59.2486 150.1041 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS166_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS166_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 13 1.78 36.801 10.71 REMARK ---------------------------------------------------------- MOLECULE T0548TS166_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 1wrdA ATOM 87 N HIS 12 -38.588 -15.707 43.598 1.00 0.00 N ATOM 88 CA HIS 12 -39.723 -16.110 42.822 1.00 0.00 C ATOM 89 C HIS 12 -39.715 -15.364 41.527 1.00 0.00 C ATOM 90 O HIS 12 -40.424 -15.725 40.589 1.00 0.00 O ATOM 91 CB HIS 12 -40.562 -15.285 43.814 1.00 0.00 C ATOM 92 CG HIS 12 -41.983 -15.086 43.375 1.00 0.00 C ATOM 93 ND1 HIS 12 -43.004 -15.979 43.613 1.00 0.00 N ATOM 94 CD2 HIS 12 -42.546 -14.053 42.689 1.00 0.00 C ATOM 95 CE1 HIS 12 -44.125 -15.446 43.065 1.00 0.00 C ATOM 96 NE2 HIS 12 -43.897 -14.278 42.492 1.00 0.00 N ATOM 97 N PHE 13 -38.889 -14.309 41.433 1.00 0.00 N ATOM 98 CA PHE 13 -38.863 -13.494 40.248 1.00 0.00 C ATOM 99 C PHE 13 -37.533 -13.636 39.580 1.00 0.00 C ATOM 100 O PHE 13 -37.282 -13.034 38.539 1.00 0.00 O ATOM 101 CB PHE 13 -38.622 -12.524 41.424 1.00 0.00 C ATOM 102 CG PHE 13 -39.911 -12.096 42.041 1.00 0.00 C ATOM 103 CD1 PHE 13 -40.519 -12.857 43.010 1.00 0.00 C ATOM 104 CD2 PHE 13 -40.501 -10.914 41.658 1.00 0.00 C ATOM 105 CE1 PHE 13 -41.703 -12.453 43.580 1.00 0.00 C ATOM 106 CE2 PHE 13 -41.685 -10.504 42.224 1.00 0.00 C ATOM 107 CZ PHE 13 -42.289 -11.274 43.188 1.00 0.00 C ATOM 108 N HIS 14 -36.632 -14.447 40.158 1.00 0.00 N ATOM 109 CA HIS 14 -35.324 -14.516 39.579 1.00 0.00 C ATOM 110 C HIS 14 -35.108 -15.897 39.048 1.00 0.00 C ATOM 111 O HIS 14 -34.054 -16.194 38.485 1.00 0.00 O ATOM 112 CB HIS 14 -34.937 -14.510 41.067 1.00 0.00 C ATOM 113 CG HIS 14 -33.448 -14.589 41.256 1.00 0.00 C ATOM 114 ND1 HIS 14 -32.613 -13.495 41.231 1.00 0.00 N ATOM 115 CD2 HIS 14 -32.640 -15.666 41.455 1.00 0.00 C ATOM 116 CE1 HIS 14 -31.351 -13.959 41.415 1.00 0.00 C ATOM 117 NE2 HIS 14 -31.318 -15.272 41.555 1.00 0.00 N ATOM 118 N TYR 15 -36.114 -16.775 39.208 1.00 0.00 N ATOM 119 CA TYR 15 -36.021 -18.147 38.797 1.00 0.00 C ATOM 120 C TYR 15 -36.962 -18.385 37.653 1.00 0.00 C ATOM 121 O TYR 15 -36.875 -19.413 36.981 1.00 0.00 O ATOM 122 CB TYR 15 -36.776 -18.435 40.110 1.00 0.00 C ATOM 123 CG TYR 15 -37.235 -19.851 40.130 1.00 0.00 C ATOM 124 CD1 TYR 15 -36.378 -20.855 40.523 1.00 0.00 C ATOM 125 CD2 TYR 15 -38.523 -20.179 39.773 1.00 0.00 C ATOM 126 CE1 TYR 15 -36.795 -22.164 40.552 1.00 0.00 C ATOM 127 CE2 TYR 15 -38.946 -21.487 39.799 1.00 0.00 C ATOM 128 CZ TYR 15 -38.082 -22.482 40.189 1.00 0.00 C ATOM 129 OH TYR 15 -38.516 -23.824 40.218 1.00 0.00 H ATOM 130 N THR 16 -37.898 -17.445 37.402 1.00 0.00 N ATOM 131 CA THR 16 -38.832 -17.620 36.324 1.00 0.00 C ATOM 132 C THR 16 -39.204 -16.273 35.810 1.00 0.00 C ATOM 133 O THR 16 -39.793 -16.132 34.739 1.00 0.00 O ATOM 134 CB THR 16 -39.856 -18.060 37.333 1.00 0.00 C ATOM 135 OG1 THR 16 -41.090 -18.319 36.684 1.00 0.00 O ATOM 136 CG2 THR 16 -40.043 -16.967 38.396 1.00 0.00 C ATOM 137 N VAL 17 -38.802 -15.223 36.546 1.00 0.00 N ATOM 138 CA VAL 17 -39.005 -13.889 36.075 1.00 0.00 C ATOM 139 C VAL 17 -37.995 -13.788 34.977 1.00 0.00 C ATOM 140 O VAL 17 -37.262 -14.726 34.731 1.00 0.00 O ATOM 141 CB VAL 17 -38.703 -12.842 37.115 1.00 0.00 C ATOM 142 CG1 VAL 17 -38.939 -11.443 36.520 1.00 0.00 C ATOM 143 CG2 VAL 17 -39.567 -13.134 38.354 1.00 0.00 C ATOM 144 N THR 18 -37.967 -12.715 34.198 1.00 0.00 N ATOM 145 CA THR 18 -37.022 -12.593 33.116 1.00 0.00 C ATOM 146 C THR 18 -37.590 -13.376 31.978 1.00 0.00 C ATOM 147 O THR 18 -37.834 -12.827 30.908 1.00 0.00 O ATOM 148 CB THR 18 -35.572 -13.008 33.313 1.00 0.00 C ATOM 149 OG1 THR 18 -35.342 -14.398 33.115 1.00 0.00 O ATOM 150 CG2 THR 18 -35.149 -12.594 34.732 1.00 0.00 C ATOM 151 N ASP 19 -37.814 -14.694 32.173 1.00 0.00 N ATOM 152 CA ASP 19 -38.402 -15.476 31.126 1.00 0.00 C ATOM 153 C ASP 19 -39.751 -14.884 30.880 1.00 0.00 C ATOM 154 O ASP 19 -40.158 -14.684 29.738 1.00 0.00 O ATOM 155 CB ASP 19 -38.610 -16.953 31.510 1.00 0.00 C ATOM 156 CG ASP 19 -37.252 -17.637 31.564 1.00 0.00 C ATOM 157 OD1 ASP 19 -36.372 -17.280 30.735 1.00 0.00 O ATOM 158 OD2 ASP 19 -37.073 -18.527 32.440 1.00 0.00 O ATOM 159 N ILE 20 -40.476 -14.568 31.970 1.00 0.00 N ATOM 160 CA ILE 20 -41.778 -13.991 31.830 1.00 0.00 C ATOM 161 C ILE 20 -41.640 -12.642 31.198 1.00 0.00 C ATOM 162 O ILE 20 -42.407 -12.285 30.303 1.00 0.00 O ATOM 163 CB ILE 20 -42.504 -13.845 33.138 1.00 0.00 C ATOM 164 CG1 ILE 20 -43.965 -13.440 32.889 1.00 0.00 C ATOM 165 CG2 ILE 20 -41.722 -12.871 34.036 1.00 0.00 C ATOM 166 CD1 ILE 20 -44.781 -14.519 32.177 1.00 0.00 C ATOM 167 N LYS 21 -40.642 -11.852 31.636 1.00 0.00 N ATOM 168 CA LYS 21 -40.522 -10.521 31.113 1.00 0.00 C ATOM 169 C LYS 21 -40.212 -10.565 29.651 1.00 0.00 C ATOM 170 O LYS 21 -40.751 -9.779 28.874 1.00 0.00 O ATOM 171 CB LYS 21 -39.429 -9.678 31.794 1.00 0.00 C ATOM 172 CG LYS 21 -39.446 -8.217 31.336 1.00 0.00 C ATOM 173 CD LYS 21 -38.682 -7.266 32.259 1.00 0.00 C ATOM 174 CE LYS 21 -38.759 -5.799 31.828 1.00 0.00 C ATOM 175 NZ LYS 21 -38.202 -4.936 32.891 1.00 0.00 N ATOM 176 N ASP 22 -39.338 -11.494 29.229 1.00 0.00 N ATOM 177 CA ASP 22 -38.942 -11.534 27.850 1.00 0.00 C ATOM 178 C ASP 22 -40.145 -11.822 27.009 1.00 0.00 C ATOM 179 O ASP 22 -40.353 -11.190 25.972 1.00 0.00 O ATOM 180 CB ASP 22 -37.893 -12.629 27.585 1.00 0.00 C ATOM 181 CG ASP 22 -37.287 -12.413 26.205 1.00 0.00 C ATOM 182 OD1 ASP 22 -38.049 -12.081 25.258 1.00 0.00 O ATOM 183 OD2 ASP 22 -36.044 -12.569 26.084 1.00 0.00 O ATOM 184 N LEU 23 -40.977 -12.784 27.442 1.00 0.00 N ATOM 185 CA LEU 23 -42.126 -13.151 26.667 1.00 0.00 C ATOM 186 C LEU 23 -43.063 -11.982 26.635 1.00 0.00 C ATOM 187 O LEU 23 -43.634 -11.670 25.590 1.00 0.00 O ATOM 188 CB LEU 23 -42.863 -14.375 27.257 1.00 0.00 C ATOM 189 CG LEU 23 -43.968 -15.018 26.382 1.00 0.00 C ATOM 190 CD1 LEU 23 -44.594 -16.218 27.110 1.00 0.00 C ATOM 191 CD2 LEU 23 -45.043 -14.024 25.916 1.00 0.00 C ATOM 192 N THR 24 -43.245 -11.296 27.780 1.00 0.00 N ATOM 193 CA THR 24 -44.202 -10.228 27.830 1.00 0.00 C ATOM 194 C THR 24 -43.819 -9.132 26.883 1.00 0.00 C ATOM 195 O THR 24 -44.646 -8.666 26.102 1.00 0.00 O ATOM 196 CB THR 24 -44.343 -9.637 29.202 1.00 0.00 C ATOM 197 OG1 THR 24 -43.116 -9.060 29.622 1.00 0.00 O ATOM 198 CG2 THR 24 -44.763 -10.752 30.173 1.00 0.00 C ATOM 199 N LYS 25 -42.549 -8.693 26.909 1.00 0.00 N ATOM 200 CA LYS 25 -42.145 -7.623 26.036 1.00 0.00 C ATOM 201 C LYS 25 -42.227 -8.053 24.608 1.00 0.00 C ATOM 202 O LYS 25 -42.608 -7.274 23.736 1.00 0.00 O ATOM 203 CB LYS 25 -40.722 -7.104 26.303 1.00 0.00 C ATOM 204 CG LYS 25 -40.670 -5.907 27.262 1.00 0.00 C ATOM 205 CD LYS 25 -41.196 -6.170 28.673 1.00 0.00 C ATOM 206 CE LYS 25 -41.168 -4.918 29.554 1.00 0.00 C ATOM 207 NZ LYS 25 -41.934 -5.150 30.798 1.00 0.00 N ATOM 208 N LEU 26 -41.883 -9.321 24.336 1.00 0.00 N ATOM 209 CA LEU 26 -41.840 -9.826 22.995 1.00 0.00 C ATOM 210 C LEU 26 -43.214 -9.716 22.406 1.00 0.00 C ATOM 211 O LEU 26 -43.382 -9.294 21.261 1.00 0.00 O ATOM 212 CB LEU 26 -41.422 -11.309 23.003 1.00 0.00 C ATOM 213 CG LEU 26 -41.065 -11.899 21.630 1.00 0.00 C ATOM 214 CD1 LEU 26 -39.820 -11.208 21.047 1.00 0.00 C ATOM 215 CD2 LEU 26 -40.895 -13.424 21.709 1.00 0.00 C ATOM 216 N GLY 27 -44.244 -10.076 23.193 1.00 0.00 N ATOM 217 CA GLY 27 -45.588 -10.058 22.696 1.00 0.00 C ATOM 218 C GLY 27 -45.982 -8.662 22.337 1.00 0.00 C ATOM 219 O GLY 27 -46.640 -8.442 21.322 1.00 0.00 O ATOM 220 N ALA 28 -45.602 -7.679 23.174 1.00 0.00 N ATOM 221 CA ALA 28 -46.016 -6.328 22.932 1.00 0.00 C ATOM 222 C ALA 28 -45.452 -5.831 21.638 1.00 0.00 C ATOM 223 O ALA 28 -46.170 -5.248 20.829 1.00 0.00 O ATOM 224 CB ALA 28 -45.542 -5.360 24.029 1.00 0.00 C ATOM 225 N ILE 29 -44.147 -6.060 21.402 1.00 0.00 N ATOM 226 CA ILE 29 -43.522 -5.536 20.220 1.00 0.00 C ATOM 227 C ILE 29 -44.061 -6.199 18.994 1.00 0.00 C ATOM 228 O ILE 29 -44.413 -5.533 18.021 1.00 0.00 O ATOM 229 CB ILE 29 -42.034 -5.719 20.211 1.00 0.00 C ATOM 230 CG1 ILE 29 -41.399 -4.951 21.383 1.00 0.00 C ATOM 231 CG2 ILE 29 -41.515 -5.273 18.835 1.00 0.00 C ATOM 232 CD1 ILE 29 -41.651 -3.444 21.342 1.00 0.00 C ATOM 233 N TYR 30 -44.162 -7.538 19.018 1.00 0.00 N ATOM 234 CA TYR 30 -44.554 -8.250 17.838 1.00 0.00 C ATOM 235 C TYR 30 -46.024 -8.130 17.625 1.00 0.00 C ATOM 236 O TYR 30 -46.824 -8.273 18.546 1.00 0.00 O ATOM 237 CB TYR 30 -44.199 -9.746 17.888 1.00 0.00 C ATOM 238 CG TYR 30 -42.717 -9.843 17.778 1.00 0.00 C ATOM 239 CD1 TYR 30 -41.913 -9.460 18.825 1.00 0.00 C ATOM 240 CD2 TYR 30 -42.132 -10.325 16.628 1.00 0.00 C ATOM 241 CE1 TYR 30 -40.546 -9.554 18.722 1.00 0.00 C ATOM 242 CE2 TYR 30 -40.765 -10.420 16.524 1.00 0.00 C ATOM 243 CZ TYR 30 -39.967 -10.028 17.571 1.00 0.00 C ATOM 244 OH TYR 30 -38.563 -10.121 17.468 1.00 0.00 H ATOM 245 N ASP 31 -46.411 -7.823 16.373 1.00 0.00 N ATOM 246 CA ASP 31 -47.796 -7.760 16.031 1.00 0.00 C ATOM 247 C ASP 31 -48.225 -9.152 15.722 1.00 0.00 C ATOM 248 O ASP 31 -47.409 -10.073 15.708 1.00 0.00 O ATOM 249 CB ASP 31 -48.093 -6.819 14.841 1.00 0.00 C ATOM 250 CG ASP 31 -47.270 -7.205 13.609 1.00 0.00 C ATOM 251 OD1 ASP 31 -46.975 -8.412 13.411 1.00 0.00 O ATOM 252 OD2 ASP 31 -46.905 -6.271 12.846 1.00 0.00 O ATOM 253 N LYS 32 -49.526 -9.355 15.459 1.00 0.00 N ATOM 254 CA LYS 32 -49.999 -10.672 15.150 1.00 0.00 C ATOM 255 C LYS 32 -49.311 -11.149 13.906 1.00 0.00 C ATOM 256 O LYS 32 -48.473 -10.458 13.335 1.00 0.00 O ATOM 257 CB LYS 32 -51.526 -10.748 14.961 1.00 0.00 C ATOM 258 CG LYS 32 -52.126 -9.542 14.232 1.00 0.00 C ATOM 259 CD LYS 32 -51.714 -9.389 12.768 1.00 0.00 C ATOM 260 CE LYS 32 -52.385 -8.190 12.091 1.00 0.00 C ATOM 261 NZ LYS 32 -51.945 -6.931 12.734 1.00 0.00 N ATOM 262 N THR 33 -49.641 -12.373 13.456 1.00 0.00 N ATOM 263 CA THR 33 -48.954 -12.941 12.331 1.00 0.00 C ATOM 264 C THR 33 -49.147 -12.010 11.184 1.00 0.00 C ATOM 265 O THR 33 -48.229 -11.752 10.407 1.00 0.00 O ATOM 266 CB THR 33 -49.509 -14.264 11.881 1.00 0.00 C ATOM 267 OG1 THR 33 -50.785 -14.074 11.294 1.00 0.00 O ATOM 268 CG2 THR 33 -49.638 -15.210 13.087 1.00 0.00 C ATOM 269 N LYS 34 -50.361 -11.455 11.069 1.00 0.00 N ATOM 270 CA LYS 34 -50.635 -10.581 9.976 1.00 0.00 C ATOM 271 C LYS 34 -49.762 -9.380 10.128 1.00 0.00 C ATOM 272 O LYS 34 -48.995 -9.271 11.084 1.00 0.00 O ATOM 273 CB LYS 34 -52.110 -10.151 9.910 1.00 0.00 C ATOM 274 CG LYS 34 -52.519 -9.474 8.603 1.00 0.00 C ATOM 275 CD LYS 34 -54.036 -9.426 8.413 1.00 0.00 C ATOM 276 CE LYS 34 -54.472 -8.750 7.112 1.00 0.00 C ATOM 277 NZ LYS 34 -54.378 -7.280 7.242 1.00 0.00 N ATOM 278 N LYS 35 -49.828 -8.466 9.143 1.00 0.00 N ATOM 279 CA LYS 35 -48.981 -7.311 9.145 1.00 0.00 C ATOM 280 C LYS 35 -49.802 -6.121 9.505 1.00 0.00 C ATOM 281 O LYS 35 -50.874 -6.234 10.096 1.00 0.00 O ATOM 282 CB LYS 35 -48.358 -7.000 7.776 1.00 0.00 C ATOM 283 CG LYS 35 -49.375 -6.566 6.720 1.00 0.00 C ATOM 284 CD LYS 35 -50.449 -7.617 6.432 1.00 0.00 C ATOM 285 CE LYS 35 -51.459 -7.184 5.369 1.00 0.00 C ATOM 286 NZ LYS 35 -52.226 -6.012 5.844 1.00 0.00 N ATOM 287 N TYR 36 -49.279 -4.934 9.143 1.00 0.00 N ATOM 288 CA TYR 36 -49.932 -3.695 9.430 1.00 0.00 C ATOM 289 C TYR 36 -50.213 -2.993 8.148 1.00 0.00 C ATOM 290 O TYR 36 -49.915 -3.479 7.057 1.00 0.00 O ATOM 291 CB TYR 36 -49.130 -2.707 10.299 1.00 0.00 C ATOM 292 CG TYR 36 -49.238 -3.110 11.730 1.00 0.00 C ATOM 293 CD1 TYR 36 -50.396 -2.848 12.426 1.00 0.00 C ATOM 294 CD2 TYR 36 -48.192 -3.718 12.385 1.00 0.00 C ATOM 295 CE1 TYR 36 -50.520 -3.199 13.749 1.00 0.00 C ATOM 296 CE2 TYR 36 -48.309 -4.071 13.709 1.00 0.00 C ATOM 297 CZ TYR 36 -49.475 -3.814 14.391 1.00 0.00 C ATOM 298 OH TYR 36 -49.597 -4.176 15.750 1.00 0.00 H ATOM 299 N TRP 37 -50.839 -1.813 8.290 1.00 0.00 N ATOM 300 CA TRP 37 -51.298 -0.995 7.212 1.00 0.00 C ATOM 301 C TRP 37 -50.150 -0.369 6.497 1.00 0.00 C ATOM 302 O TRP 37 -48.986 -0.713 6.698 1.00 0.00 O ATOM 303 CB TRP 37 -52.254 0.124 7.660 1.00 0.00 C ATOM 304 CG TRP 37 -53.592 -0.395 8.130 1.00 0.00 C ATOM 305 CD1 TRP 37 -54.032 -1.684 8.211 1.00 0.00 C ATOM 306 CD2 TRP 37 -54.673 0.434 8.586 1.00 0.00 C ATOM 307 NE1 TRP 37 -55.319 -1.712 8.689 1.00 0.00 N ATOM 308 CE2 TRP 37 -55.727 -0.414 8.923 1.00 0.00 C ATOM 309 CE3 TRP 37 -54.779 1.789 8.713 1.00 0.00 C ATOM 310 CZ2 TRP 37 -56.908 0.082 9.395 1.00 0.00 C ATOM 311 CZ3 TRP 37 -55.972 2.286 9.189 1.00 0.00 C ATOM 312 CH2 TRP 37 -57.016 1.449 9.524 1.00 0.00 H ATOM 313 N VAL 38 -50.509 0.575 5.611 1.00 0.00 N ATOM 314 CA VAL 38 -49.660 1.285 4.701 1.00 0.00 C ATOM 315 C VAL 38 -48.605 2.016 5.457 1.00 0.00 C ATOM 316 O VAL 38 -47.541 2.285 4.898 1.00 0.00 O ATOM 317 CB VAL 38 -50.409 2.304 3.897 1.00 0.00 C ATOM 318 CG1 VAL 38 -49.403 3.079 3.028 1.00 0.00 C ATOM 319 CG2 VAL 38 -51.503 1.585 3.092 1.00 0.00 C ATOM 320 N TYR 39 -48.869 2.357 6.735 1.00 0.00 N ATOM 321 CA TYR 39 -47.939 3.144 7.498 1.00 0.00 C ATOM 322 C TYR 39 -46.610 2.460 7.452 1.00 0.00 C ATOM 323 O TYR 39 -45.596 3.093 7.159 1.00 0.00 O ATOM 324 CB TYR 39 -48.308 3.237 8.991 1.00 0.00 C ATOM 325 CG TYR 39 -49.586 3.983 9.159 1.00 0.00 C ATOM 326 CD1 TYR 39 -50.797 3.358 8.968 1.00 0.00 C ATOM 327 CD2 TYR 39 -49.576 5.309 9.526 1.00 0.00 C ATOM 328 CE1 TYR 39 -51.980 4.044 9.129 1.00 0.00 C ATOM 329 CE2 TYR 39 -50.754 6.000 9.689 1.00 0.00 C ATOM 330 CZ TYR 39 -51.958 5.368 9.490 1.00 0.00 C ATOM 331 OH TYR 39 -53.164 6.079 9.659 1.00 0.00 H ATOM 332 N GLN 40 -46.571 1.143 7.716 1.00 0.00 N ATOM 333 CA GLN 40 -45.304 0.483 7.618 1.00 0.00 C ATOM 334 C GLN 40 -45.541 -0.893 7.091 1.00 0.00 C ATOM 335 O GLN 40 -46.574 -1.502 7.358 1.00 0.00 O ATOM 336 CB GLN 40 -44.561 0.344 8.959 1.00 0.00 C ATOM 337 CG GLN 40 -44.094 1.682 9.533 1.00 0.00 C ATOM 338 CD GLN 40 -43.376 1.411 10.847 1.00 0.00 C ATOM 339 OE1 GLN 40 -43.382 0.290 11.355 1.00 0.00 O ATOM 340 NE2 GLN 40 -42.738 2.467 11.415 1.00 0.00 N ATOM 341 N GLY 41 -44.575 -1.409 6.305 1.00 0.00 N ATOM 342 CA GLY 41 -44.703 -2.736 5.782 1.00 0.00 C ATOM 343 C GLY 41 -43.321 -3.237 5.529 1.00 0.00 C ATOM 344 O GLY 41 -42.500 -2.550 4.927 1.00 0.00 O ATOM 345 N LYS 42 -43.032 -4.468 5.996 1.00 0.00 N ATOM 346 CA LYS 42 -41.730 -5.029 5.805 1.00 0.00 C ATOM 347 C LYS 42 -41.791 -6.477 6.165 1.00 0.00 C ATOM 348 O LYS 42 -42.830 -7.031 6.521 1.00 0.00 O ATOM 349 CB LYS 42 -40.638 -4.399 6.692 1.00 0.00 C ATOM 350 CG LYS 42 -40.100 -3.059 6.185 1.00 0.00 C ATOM 351 CD LYS 42 -39.401 -3.166 4.828 1.00 0.00 C ATOM 352 CE LYS 42 -38.095 -3.966 4.872 1.00 0.00 C ATOM 353 NZ LYS 42 -37.513 -4.059 3.514 1.00 0.00 N ATOM 354 N PRO 43 -40.648 -7.080 6.019 1.00 0.00 N ATOM 355 CA PRO 43 -40.457 -8.457 6.389 1.00 0.00 C ATOM 356 C PRO 43 -40.454 -8.573 7.880 1.00 0.00 C ATOM 357 O PRO 43 -40.336 -9.685 8.394 1.00 0.00 O ATOM 358 CB PRO 43 -39.147 -8.886 5.736 1.00 0.00 C ATOM 359 CG PRO 43 -39.042 -7.974 4.502 1.00 0.00 C ATOM 360 CD PRO 43 -39.782 -6.697 4.912 1.00 0.00 C ATOM 361 N VAL 44 -40.591 -7.434 8.578 1.00 0.00 N ATOM 362 CA VAL 44 -40.526 -7.350 10.009 1.00 0.00 C ATOM 363 C VAL 44 -41.586 -8.212 10.614 1.00 0.00 C ATOM 364 O VAL 44 -41.394 -8.713 11.720 1.00 0.00 O ATOM 365 CB VAL 44 -40.746 -5.959 10.518 1.00 0.00 C ATOM 366 CG1 VAL 44 -40.687 -5.987 12.055 1.00 0.00 C ATOM 367 CG2 VAL 44 -39.700 -5.039 9.871 1.00 0.00 C ATOM 368 N MET 45 -42.724 -8.393 9.907 1.00 0.00 N ATOM 369 CA MET 45 -43.863 -9.145 10.377 1.00 0.00 C ATOM 370 C MET 45 -43.368 -10.425 10.960 1.00 0.00 C ATOM 371 O MET 45 -42.436 -11.039 10.441 1.00 0.00 O ATOM 372 CB MET 45 -44.812 -9.572 9.245 1.00 0.00 C ATOM 373 CG MET 45 -45.402 -8.428 8.425 1.00 0.00 C ATOM 374 SD MET 45 -46.194 -8.986 6.886 1.00 0.00 S ATOM 375 CE MET 45 -44.657 -9.598 6.137 1.00 0.00 C ATOM 376 N PRO 46 -43.977 -10.810 12.054 1.00 0.00 N ATOM 377 CA PRO 46 -43.573 -11.978 12.781 1.00 0.00 C ATOM 378 C PRO 46 -43.521 -13.124 11.830 1.00 0.00 C ATOM 379 O PRO 46 -44.522 -13.394 11.169 1.00 0.00 O ATOM 380 CB PRO 46 -44.642 -12.208 13.850 1.00 0.00 C ATOM 381 CG PRO 46 -45.561 -10.971 13.768 1.00 0.00 C ATOM 382 CD PRO 46 -45.356 -10.455 12.334 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 89.37 52.9 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 66.15 70.6 34 100.0 34 ARMSMC SURFACE . . . . . . . . 87.81 53.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 96.33 50.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.94 46.9 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 88.07 41.4 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 87.54 47.1 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 85.86 44.4 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 72.69 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.44 56.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 61.37 57.1 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 64.10 61.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 68.98 59.1 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 64.32 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 59.53 75.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 63.57 71.4 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 83.60 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 59.53 75.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.49 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 94.49 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 83.30 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 94.49 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.71 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.71 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.3059 CRMSCA SECONDARY STRUCTURE . . 8.93 17 100.0 17 CRMSCA SURFACE . . . . . . . . 10.44 29 100.0 29 CRMSCA BURIED . . . . . . . . 11.92 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.73 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 8.96 85 100.0 85 CRMSMC SURFACE . . . . . . . . 10.50 143 100.0 143 CRMSMC BURIED . . . . . . . . 11.76 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.58 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 13.19 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 10.93 84 100.0 84 CRMSSC SURFACE . . . . . . . . 12.69 127 100.0 127 CRMSSC BURIED . . . . . . . . 16.92 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.24 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 10.07 152 100.0 152 CRMSALL SURFACE . . . . . . . . 11.64 243 100.0 243 CRMSALL BURIED . . . . . . . . 14.70 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.367 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 8.112 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 9.017 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 11.056 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.417 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 8.182 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 9.120 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 10.833 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.881 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 11.512 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 9.875 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 10.926 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 16.065 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.660 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 9.088 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 10.024 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 13.576 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 7 23 35 35 DISTCA CA (P) 0.00 0.00 0.00 20.00 65.71 35 DISTCA CA (RMS) 0.00 0.00 0.00 4.48 6.48 DISTCA ALL (N) 0 1 5 34 174 296 296 DISTALL ALL (P) 0.00 0.34 1.69 11.49 58.78 296 DISTALL ALL (RMS) 0.00 1.75 2.59 4.06 6.77 DISTALL END of the results output