####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0548TS165_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 31 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS165_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 31 16 - 46 3.36 3.36 LCS_AVERAGE: 88.57 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 16 - 26 1.60 7.29 LONGEST_CONTINUOUS_SEGMENT: 11 32 - 42 2.00 7.15 LCS_AVERAGE: 30.05 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 16 - 25 0.95 8.74 LCS_AVERAGE: 18.99 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 16 T 16 10 11 31 0 3 9 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT V 17 V 17 10 11 31 3 4 9 10 10 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT T 18 T 18 10 11 31 3 8 9 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT D 19 D 19 10 11 31 7 8 9 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT I 20 I 20 10 11 31 7 8 9 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT K 21 K 21 10 11 31 7 8 9 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT D 22 D 22 10 11 31 7 8 9 10 12 17 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT L 23 L 23 10 11 31 7 8 9 10 10 15 18 25 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT T 24 T 24 10 11 31 7 8 9 10 12 16 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT K 25 K 25 10 11 31 7 8 9 10 12 15 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT L 26 L 26 3 11 31 3 3 5 8 11 16 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT G 27 G 27 3 9 31 3 3 4 9 15 18 22 23 27 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT A 28 A 28 5 9 31 4 5 8 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT I 29 I 29 5 9 31 4 5 6 7 15 18 22 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT Y 30 Y 30 5 9 31 4 5 8 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT D 31 D 31 5 9 31 4 5 6 8 12 18 22 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT K 32 K 32 5 11 31 3 5 6 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT T 33 T 33 5 11 31 3 3 6 10 12 16 22 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT K 34 K 34 4 11 31 3 3 5 7 8 9 15 18 23 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT K 35 K 35 5 11 31 3 3 6 10 12 17 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT Y 36 Y 36 5 11 31 3 4 6 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT W 37 W 37 5 11 31 3 4 5 8 12 17 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT V 38 V 38 5 11 31 3 4 6 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT Y 39 Y 39 5 11 31 3 4 6 10 12 14 16 19 24 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT Q 40 Q 40 5 11 31 3 4 6 10 12 14 17 19 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT G 41 G 41 6 11 31 4 7 8 10 12 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT K 42 K 42 6 11 31 4 7 8 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT P 43 P 43 6 10 31 4 7 8 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT V 44 V 44 6 10 31 4 7 8 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT M 45 M 45 6 10 31 4 7 8 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_GDT P 46 P 46 6 9 31 3 7 8 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 LCS_AVERAGE LCS_A: 45.87 ( 18.99 30.05 88.57 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 8 9 10 15 18 23 26 28 30 31 31 31 31 31 31 31 31 31 31 GDT PERCENT_AT 20.00 22.86 25.71 28.57 42.86 51.43 65.71 74.29 80.00 85.71 88.57 88.57 88.57 88.57 88.57 88.57 88.57 88.57 88.57 88.57 GDT RMS_LOCAL 0.39 0.52 0.82 0.95 1.77 2.09 2.66 2.84 3.05 3.20 3.36 3.36 3.36 3.36 3.36 3.36 3.36 3.36 3.36 3.36 GDT RMS_ALL_AT 9.24 8.92 8.64 8.74 4.17 3.86 3.46 3.40 3.39 3.38 3.36 3.36 3.36 3.36 3.36 3.36 3.36 3.36 3.36 3.36 # Checking swapping # possible swapping detected: Y 30 Y 30 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 16 T 16 2.299 0 0.021 1.055 5.235 57.500 46.395 LGA V 17 V 17 3.205 0 0.283 0.357 6.545 61.190 43.673 LGA T 18 T 18 2.173 0 0.091 1.094 5.127 69.048 55.646 LGA D 19 D 19 1.998 0 0.127 0.267 3.538 70.833 63.214 LGA I 20 I 20 1.351 0 0.031 1.076 4.028 81.548 66.190 LGA K 21 K 21 0.780 0 0.053 1.452 5.916 82.024 69.735 LGA D 22 D 22 3.516 0 0.072 0.852 7.420 43.810 31.607 LGA L 23 L 23 4.603 0 0.034 0.249 7.783 34.524 26.369 LGA T 24 T 24 3.571 0 0.092 1.165 4.040 45.119 45.306 LGA K 25 K 25 3.444 0 0.394 0.723 12.998 53.571 28.413 LGA L 26 L 26 3.275 0 0.550 1.355 9.491 49.048 28.750 LGA G 27 G 27 4.656 0 0.054 0.054 5.967 36.786 36.786 LGA A 28 A 28 2.921 0 0.184 0.267 3.422 55.357 54.286 LGA I 29 I 29 3.804 0 0.143 1.689 9.040 48.452 29.464 LGA Y 30 Y 30 3.236 0 0.151 1.424 10.174 48.571 22.262 LGA D 31 D 31 3.582 0 0.204 1.033 8.058 46.905 28.333 LGA K 32 K 32 2.178 0 0.562 0.920 9.716 57.500 35.767 LGA T 33 T 33 3.752 0 0.352 1.418 6.501 39.524 31.429 LGA K 34 K 34 6.862 0 0.213 0.557 18.123 21.786 10.000 LGA K 35 K 35 3.092 0 0.708 0.854 5.723 50.119 43.333 LGA Y 36 Y 36 2.582 0 0.134 1.320 12.404 60.952 28.135 LGA W 37 W 37 3.552 0 0.084 1.170 10.645 51.905 18.639 LGA V 38 V 38 2.840 0 0.220 0.889 5.978 44.167 40.680 LGA Y 39 Y 39 5.109 0 0.541 0.548 8.360 28.214 17.302 LGA Q 40 Q 40 5.812 0 0.349 0.759 10.769 23.810 12.116 LGA G 41 G 41 3.308 0 0.737 0.737 3.841 57.738 57.738 LGA K 42 K 42 2.707 0 0.160 0.866 4.787 61.548 54.021 LGA P 43 P 43 1.641 0 0.046 0.255 2.860 70.833 66.054 LGA V 44 V 44 1.088 0 0.046 0.968 2.921 77.143 75.578 LGA M 45 M 45 2.661 0 0.168 0.861 3.505 62.857 63.393 LGA P 46 P 46 1.844 0 0.067 0.286 2.862 64.881 65.986 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 253 253 100.00 35 SUMMARY(RMSD_GDC): 3.364 3.340 5.389 47.350 37.046 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 35 4.0 26 2.84 53.571 51.973 0.886 LGA_LOCAL RMSD: 2.836 Number of atoms: 26 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.403 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 3.364 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.028021 * X + -0.297484 * Y + 0.954315 * Z + 28.334919 Y_new = -0.995131 * X + 0.081946 * Y + 0.054765 * Z + -92.682907 Z_new = -0.094494 * X + -0.951203 * Y + -0.293740 * Z + 25.192398 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.542645 0.094635 -1.870315 [DEG: -88.3871 5.4222 -107.1611 ] ZXZ: 1.628120 1.868933 -3.042576 [DEG: 93.2844 107.0820 -174.3268 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS165_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS165_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 35 4.0 26 2.84 51.973 3.36 REMARK ---------------------------------------------------------- MOLECULE T0548TS165_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3l2t_A ATOM 130 N THR 16 -38.665 -19.483 37.394 1.00294.81 N ATOM 131 CA THR 16 -38.822 -18.552 36.299 1.00294.81 C ATOM 132 CB THR 16 -40.216 -18.020 36.154 1.00294.81 C ATOM 133 OG1 THR 16 -40.328 -17.266 34.955 1.00294.81 O ATOM 134 CG2 THR 16 -40.523 -17.128 37.368 1.00294.81 C ATOM 135 C THR 16 -37.935 -17.358 36.516 1.00294.81 C ATOM 136 O THR 16 -37.405 -17.162 37.609 1.00294.81 O ATOM 137 N VAL 17 -37.755 -16.529 35.454 1.00 87.56 N ATOM 138 CA VAL 17 -36.950 -15.333 35.527 1.00 87.56 C ATOM 139 CB VAL 17 -35.463 -15.541 35.398 1.00 87.56 C ATOM 140 CG1 VAL 17 -34.759 -14.174 35.499 1.00 87.56 C ATOM 141 CG2 VAL 17 -34.994 -16.517 36.479 1.00 87.56 C ATOM 142 C VAL 17 -37.351 -14.428 34.396 1.00 87.56 C ATOM 143 O VAL 17 -38.387 -13.765 34.450 1.00 87.56 O ATOM 144 N THR 18 -36.528 -14.403 33.328 1.00105.82 N ATOM 145 CA THR 18 -36.641 -13.526 32.195 1.00105.82 C ATOM 146 CB THR 18 -35.597 -13.789 31.149 1.00105.82 C ATOM 147 OG1 THR 18 -35.647 -12.792 30.138 1.00105.82 O ATOM 148 CG2 THR 18 -35.848 -15.178 30.538 1.00105.82 C ATOM 149 C THR 18 -37.971 -13.731 31.559 1.00105.82 C ATOM 150 O THR 18 -38.542 -12.809 30.978 1.00105.82 O ATOM 151 N ASP 19 -38.507 -14.953 31.665 1.00 37.65 N ATOM 152 CA ASP 19 -39.760 -15.269 31.056 1.00 37.65 C ATOM 153 CB ASP 19 -40.223 -16.704 31.358 1.00 37.65 C ATOM 154 CG ASP 19 -39.291 -17.642 30.605 1.00 37.65 C ATOM 155 OD1 ASP 19 -38.453 -17.131 29.815 1.00 37.65 O ATOM 156 OD2 ASP 19 -39.403 -18.880 30.810 1.00 37.65 O ATOM 157 C ASP 19 -40.783 -14.321 31.598 1.00 37.65 C ATOM 158 O ASP 19 -41.781 -14.043 30.938 1.00 37.65 O ATOM 159 N ILE 20 -40.561 -13.787 32.814 1.00 79.25 N ATOM 160 CA ILE 20 -41.539 -12.923 33.412 1.00 79.25 C ATOM 161 CB ILE 20 -41.125 -12.398 34.765 1.00 79.25 C ATOM 162 CG2 ILE 20 -39.897 -11.483 34.614 1.00 79.25 C ATOM 163 CG1 ILE 20 -42.320 -11.717 35.454 1.00 79.25 C ATOM 164 CD1 ILE 20 -42.068 -11.391 36.924 1.00 79.25 C ATOM 165 C ILE 20 -41.794 -11.745 32.518 1.00 79.25 C ATOM 166 O ILE 20 -42.946 -11.375 32.301 1.00 79.25 O ATOM 167 N LYS 21 -40.737 -11.130 31.952 1.00 64.47 N ATOM 168 CA LYS 21 -40.931 -9.976 31.122 1.00 64.47 C ATOM 169 CB LYS 21 -39.628 -9.375 30.566 1.00 64.47 C ATOM 170 CG LYS 21 -38.790 -8.611 31.591 1.00 64.47 C ATOM 171 CD LYS 21 -38.101 -9.497 32.628 1.00 64.47 C ATOM 172 CE LYS 21 -37.158 -8.718 33.546 1.00 64.47 C ATOM 173 NZ LYS 21 -36.505 -9.636 34.505 1.00 64.47 N ATOM 174 C LYS 21 -41.735 -10.382 29.935 1.00 64.47 C ATOM 175 O LYS 21 -42.587 -9.635 29.457 1.00 64.47 O ATOM 176 N ASP 22 -41.490 -11.598 29.427 1.00 63.31 N ATOM 177 CA ASP 22 -42.146 -12.006 28.224 1.00 63.31 C ATOM 178 CB ASP 22 -41.721 -13.414 27.771 1.00 63.31 C ATOM 179 CG ASP 22 -41.753 -13.419 26.251 1.00 63.31 C ATOM 180 OD1 ASP 22 -42.476 -12.567 25.682 1.00 63.31 O ATOM 181 OD2 ASP 22 -41.027 -14.253 25.636 1.00 63.31 O ATOM 182 C ASP 22 -43.619 -11.997 28.499 1.00 63.31 C ATOM 183 O ASP 22 -44.405 -11.563 27.657 1.00 63.31 O ATOM 184 N LEU 23 -44.021 -12.448 29.708 1.00 64.46 N ATOM 185 CA LEU 23 -45.402 -12.476 30.112 1.00 64.46 C ATOM 186 CB LEU 23 -45.613 -12.990 31.556 1.00 64.46 C ATOM 187 CG LEU 23 -46.171 -14.420 31.683 1.00 64.46 C ATOM 188 CD1 LEU 23 -46.114 -14.946 33.126 1.00 64.46 C ATOM 189 CD2 LEU 23 -47.622 -14.452 31.150 1.00 64.46 C ATOM 190 C LEU 23 -45.961 -11.101 30.095 1.00 64.46 C ATOM 191 O LEU 23 -47.067 -10.891 29.598 1.00 64.46 O ATOM 192 N THR 24 -45.211 -10.121 30.629 1.00121.76 N ATOM 193 CA THR 24 -45.788 -8.817 30.713 1.00121.76 C ATOM 194 CB THR 24 -44.927 -7.826 31.456 1.00121.76 C ATOM 195 OG1 THR 24 -45.691 -6.675 31.783 1.00121.76 O ATOM 196 CG2 THR 24 -43.705 -7.423 30.619 1.00121.76 C ATOM 197 C THR 24 -46.097 -8.346 29.328 1.00121.76 C ATOM 198 O THR 24 -47.231 -7.948 29.068 1.00121.76 O ATOM 199 N LYS 25 -45.120 -8.419 28.395 1.00187.73 N ATOM 200 CA LYS 25 -45.391 -8.042 27.037 1.00187.73 C ATOM 201 CB LYS 25 -46.096 -6.673 26.944 1.00187.73 C ATOM 202 CG LYS 25 -46.741 -6.353 25.597 1.00187.73 C ATOM 203 CD LYS 25 -47.720 -5.180 25.690 1.00187.73 C ATOM 204 CE LYS 25 -48.523 -4.942 24.410 1.00187.73 C ATOM 205 NZ LYS 25 -49.539 -3.888 24.634 1.00187.73 N ATOM 206 C LYS 25 -44.075 -7.868 26.346 1.00187.73 C ATOM 207 O LYS 25 -43.816 -6.792 25.812 1.00187.73 O ATOM 208 N LEU 26 -43.207 -8.901 26.303 1.00129.55 N ATOM 209 CA LEU 26 -41.960 -8.618 25.652 1.00129.55 C ATOM 210 CB LEU 26 -40.857 -8.220 26.657 1.00129.55 C ATOM 211 CG LEU 26 -41.126 -6.932 27.467 1.00129.55 C ATOM 212 CD1 LEU 26 -39.976 -6.647 28.449 1.00129.55 C ATOM 213 CD2 LEU 26 -41.401 -5.728 26.551 1.00129.55 C ATOM 214 C LEU 26 -41.443 -9.824 24.922 1.00129.55 C ATOM 215 O LEU 26 -40.806 -10.681 25.531 1.00129.55 O ATOM 216 N GLY 27 -41.654 -9.897 23.587 1.00109.01 N ATOM 217 CA GLY 27 -41.011 -10.920 22.798 1.00109.01 C ATOM 218 C GLY 27 -41.755 -12.221 22.631 1.00109.01 C ATOM 219 O GLY 27 -41.080 -13.226 22.415 1.00109.01 O ATOM 220 N ALA 28 -43.111 -12.257 22.761 1.00275.56 N ATOM 221 CA ALA 28 -43.942 -13.422 22.488 1.00275.56 C ATOM 222 CB ALA 28 -43.295 -14.610 21.737 1.00275.56 C ATOM 223 C ALA 28 -44.496 -13.953 23.768 1.00275.56 C ATOM 224 O ALA 28 -44.713 -13.204 24.719 1.00275.56 O ATOM 225 N ILE 29 -44.874 -15.255 23.759 1.00242.22 N ATOM 226 CA ILE 29 -45.122 -15.883 25.020 1.00242.22 C ATOM 227 CB ILE 29 -43.958 -15.520 25.919 1.00242.22 C ATOM 228 CG2 ILE 29 -44.394 -14.631 27.090 1.00242.22 C ATOM 229 CG1 ILE 29 -43.013 -16.706 26.128 1.00242.22 C ATOM 230 CD1 ILE 29 -42.292 -17.126 24.855 1.00242.22 C ATOM 231 C ILE 29 -46.474 -15.603 25.632 1.00242.22 C ATOM 232 O ILE 29 -46.849 -14.454 25.866 1.00242.22 O ATOM 233 N TYR 30 -47.253 -16.689 25.885 1.00127.38 N ATOM 234 CA TYR 30 -48.500 -16.628 26.609 1.00127.38 C ATOM 235 CB TYR 30 -49.778 -16.877 25.769 1.00127.38 C ATOM 236 CG TYR 30 -50.084 -18.330 25.625 1.00127.38 C ATOM 237 CD1 TYR 30 -50.855 -18.957 26.579 1.00127.38 C ATOM 238 CD2 TYR 30 -49.637 -19.060 24.549 1.00127.38 C ATOM 239 CE1 TYR 30 -51.164 -20.293 26.479 1.00127.38 C ATOM 240 CE2 TYR 30 -49.944 -20.399 24.443 1.00127.38 C ATOM 241 CZ TYR 30 -50.706 -21.016 25.406 1.00127.38 C ATOM 242 OH TYR 30 -51.021 -22.387 25.298 1.00127.38 H ATOM 243 C TYR 30 -48.391 -17.700 27.667 1.00127.38 C ATOM 244 O TYR 30 -47.670 -18.679 27.476 1.00127.38 O ATOM 245 N ASP 31 -49.099 -17.542 28.810 1.00107.24 N ATOM 246 CA ASP 31 -48.911 -18.406 29.954 1.00107.24 C ATOM 247 CB ASP 31 -48.656 -17.560 31.216 1.00107.24 C ATOM 248 CG ASP 31 -48.476 -18.422 32.457 1.00107.24 C ATOM 249 OD1 ASP 31 -47.929 -19.549 32.364 1.00107.24 O ATOM 250 OD2 ASP 31 -48.888 -17.935 33.544 1.00107.24 O ATOM 251 C ASP 31 -50.098 -19.292 30.245 1.00107.24 C ATOM 252 O ASP 31 -51.241 -18.948 29.948 1.00107.24 O ATOM 253 N LYS 32 -49.820 -20.495 30.812 1.00 83.86 N ATOM 254 CA LYS 32 -50.785 -21.424 31.365 1.00 83.86 C ATOM 255 CB LYS 32 -51.515 -22.377 30.389 1.00 83.86 C ATOM 256 CG LYS 32 -52.680 -21.820 29.575 1.00 83.86 C ATOM 257 CD LYS 32 -53.207 -22.863 28.588 1.00 83.86 C ATOM 258 CE LYS 32 -54.584 -22.537 28.022 1.00 83.86 C ATOM 259 NZ LYS 32 -55.057 -23.681 27.216 1.00 83.86 N ATOM 260 C LYS 32 -50.018 -22.348 32.279 1.00 83.86 C ATOM 261 O LYS 32 -48.792 -22.343 32.278 1.00 83.86 O ATOM 262 N THR 33 -50.731 -23.067 33.171 1.00165.62 N ATOM 263 CA THR 33 -50.247 -24.134 34.023 1.00165.62 C ATOM 264 CB THR 33 -50.436 -25.541 33.483 1.00165.62 C ATOM 265 OG1 THR 33 -50.218 -26.476 34.529 1.00165.62 O ATOM 266 CG2 THR 33 -49.462 -25.837 32.335 1.00165.62 C ATOM 267 C THR 33 -48.831 -23.938 34.493 1.00165.62 C ATOM 268 O THR 33 -48.040 -24.880 34.475 1.00165.62 O ATOM 269 N LYS 34 -48.460 -22.723 34.941 1.00 88.55 N ATOM 270 CA LYS 34 -47.143 -22.514 35.483 1.00 88.55 C ATOM 271 CB LYS 34 -46.930 -23.304 36.784 1.00 88.55 C ATOM 272 CG LYS 34 -45.667 -22.930 37.555 1.00 88.55 C ATOM 273 CD LYS 34 -45.634 -23.512 38.967 1.00 88.55 C ATOM 274 CE LYS 34 -44.446 -23.015 39.788 1.00 88.55 C ATOM 275 NZ LYS 34 -44.320 -23.812 41.026 1.00 88.55 N ATOM 276 C LYS 34 -46.097 -22.946 34.498 1.00 88.55 C ATOM 277 O LYS 34 -45.004 -23.348 34.892 1.00 88.55 O ATOM 278 N LYS 35 -46.410 -22.857 33.192 1.00 74.25 N ATOM 279 CA LYS 35 -45.524 -23.218 32.121 1.00 74.25 C ATOM 280 CB LYS 35 -45.854 -24.579 31.482 1.00 74.25 C ATOM 281 CG LYS 35 -45.495 -25.746 32.402 1.00 74.25 C ATOM 282 CD LYS 35 -46.001 -27.105 31.924 1.00 74.25 C ATOM 283 CE LYS 35 -45.609 -28.245 32.861 1.00 74.25 C ATOM 284 NZ LYS 35 -44.134 -28.334 32.950 1.00 74.25 N ATOM 285 C LYS 35 -45.659 -22.150 31.079 1.00 74.25 C ATOM 286 O LYS 35 -46.192 -21.081 31.356 1.00 74.25 O ATOM 287 N TYR 36 -45.151 -22.380 29.851 1.00163.57 N ATOM 288 CA TYR 36 -45.267 -21.355 28.849 1.00163.57 C ATOM 289 CB TYR 36 -43.949 -20.631 28.600 1.00163.57 C ATOM 290 CG TYR 36 -44.464 -19.267 28.764 1.00163.57 C ATOM 291 CD1 TYR 36 -44.635 -18.738 30.023 1.00163.57 C ATOM 292 CD2 TYR 36 -44.821 -18.550 27.660 1.00163.57 C ATOM 293 CE1 TYR 36 -45.147 -17.471 30.170 1.00163.57 C ATOM 294 CE2 TYR 36 -45.329 -17.301 27.817 1.00163.57 C ATOM 295 CZ TYR 36 -45.493 -16.757 29.051 1.00163.57 C ATOM 296 OH TYR 36 -46.028 -15.464 29.134 1.00163.57 H ATOM 297 C TYR 36 -45.702 -22.017 27.583 1.00163.57 C ATOM 298 O TYR 36 -45.731 -23.233 27.584 1.00163.57 O ATOM 299 N TRP 37 -46.113 -21.282 26.508 1.00124.32 N ATOM 300 CA TRP 37 -46.512 -21.931 25.266 1.00124.32 C ATOM 301 CB TRP 37 -47.965 -22.459 25.230 1.00124.32 C ATOM 302 CG TRP 37 -48.152 -23.701 26.072 1.00124.32 C ATOM 303 CD2 TRP 37 -48.388 -23.628 27.476 1.00124.32 C ATOM 304 CD1 TRP 37 -48.068 -25.028 25.760 1.00124.32 C ATOM 305 NE1 TRP 37 -48.207 -25.788 26.902 1.00124.32 N ATOM 306 CE2 TRP 37 -48.402 -24.935 27.968 1.00124.32 C ATOM 307 CE3 TRP 37 -48.523 -22.546 28.286 1.00124.32 C ATOM 308 CZ2 TRP 37 -48.561 -25.183 29.300 1.00124.32 C ATOM 309 CZ3 TRP 37 -48.715 -22.801 29.609 1.00124.32 C ATOM 310 CH2 TRP 37 -48.733 -24.082 30.107 1.00124.32 H ATOM 311 C TRP 37 -46.307 -21.026 24.067 1.00124.32 C ATOM 312 O TRP 37 -45.950 -19.858 24.215 1.00124.32 O ATOM 313 N VAL 38 -46.503 -21.568 22.828 1.00113.61 N ATOM 314 CA VAL 38 -46.285 -20.773 21.637 1.00113.61 C ATOM 315 CB VAL 38 -44.823 -20.545 21.318 1.00113.61 C ATOM 316 CG1 VAL 38 -44.197 -21.800 20.693 1.00113.61 C ATOM 317 CG2 VAL 38 -44.691 -19.260 20.481 1.00113.61 C ATOM 318 C VAL 38 -47.036 -21.303 20.413 1.00113.61 C ATOM 319 O VAL 38 -48.044 -22.000 20.538 1.00113.61 O ATOM 320 N TYR 39 -46.536 -20.954 19.193 1.00157.65 N ATOM 321 CA TYR 39 -47.111 -21.101 17.862 1.00157.65 C ATOM 322 CB TYR 39 -46.045 -20.887 16.770 1.00157.65 C ATOM 323 CG TYR 39 -46.223 -19.696 15.900 1.00157.65 C ATOM 324 CD1 TYR 39 -45.722 -18.465 16.246 1.00157.65 C ATOM 325 CD2 TYR 39 -46.872 -19.842 14.694 1.00157.65 C ATOM 326 CE1 TYR 39 -45.888 -17.391 15.403 1.00157.65 C ATOM 327 CE2 TYR 39 -47.040 -18.773 13.848 1.00157.65 C ATOM 328 CZ TYR 39 -46.548 -17.542 14.205 1.00157.65 C ATOM 329 OH TYR 39 -46.715 -16.438 13.342 1.00157.65 H ATOM 330 C TYR 39 -47.553 -22.474 17.459 1.00157.65 C ATOM 331 O TYR 39 -48.744 -22.725 17.284 1.00157.65 O ATOM 332 N GLN 40 -46.598 -23.406 17.308 1.00 97.19 N ATOM 333 CA GLN 40 -46.934 -24.710 16.810 1.00 97.19 C ATOM 334 CB GLN 40 -45.680 -25.584 16.578 1.00 97.19 C ATOM 335 CG GLN 40 -45.913 -26.862 15.759 1.00 97.19 C ATOM 336 CD GLN 40 -44.552 -27.494 15.466 1.00 97.19 C ATOM 337 OE1 GLN 40 -44.427 -28.712 15.348 1.00 97.19 O ATOM 338 NE2 GLN 40 -43.500 -26.641 15.332 1.00 97.19 N ATOM 339 C GLN 40 -47.766 -25.278 17.894 1.00 97.19 C ATOM 340 O GLN 40 -48.683 -26.076 17.701 1.00 97.19 O ATOM 341 N GLY 41 -47.416 -24.788 19.084 1.00 73.31 N ATOM 342 CA GLY 41 -47.900 -25.115 20.376 1.00 73.31 C ATOM 343 C GLY 41 -46.630 -24.870 21.083 1.00 73.31 C ATOM 344 O GLY 41 -45.968 -23.879 20.806 1.00 73.31 O ATOM 345 N LYS 42 -46.273 -25.750 22.018 1.00184.34 N ATOM 346 CA LYS 42 -44.945 -25.744 22.542 1.00184.34 C ATOM 347 CB LYS 42 -43.845 -25.439 21.509 1.00184.34 C ATOM 348 CG LYS 42 -44.042 -26.094 20.144 1.00184.34 C ATOM 349 CD LYS 42 -44.113 -27.619 20.159 1.00184.34 C ATOM 350 CE LYS 42 -44.468 -28.205 18.793 1.00184.34 C ATOM 351 NZ LYS 42 -45.877 -27.895 18.473 1.00184.34 N ATOM 352 C LYS 42 -44.755 -24.765 23.647 1.00184.34 C ATOM 353 O LYS 42 -44.873 -23.552 23.504 1.00184.34 O ATOM 354 N PRO 43 -44.464 -25.368 24.758 1.00 91.58 N ATOM 355 CA PRO 43 -44.088 -24.633 25.926 1.00 91.58 C ATOM 356 CD PRO 43 -45.340 -26.463 25.125 1.00 91.58 C ATOM 357 CB PRO 43 -44.296 -25.595 27.109 1.00 91.58 C ATOM 358 CG PRO 43 -44.811 -26.903 26.480 1.00 91.58 C ATOM 359 C PRO 43 -42.719 -24.035 25.862 1.00 91.58 C ATOM 360 O PRO 43 -41.830 -24.664 25.309 1.00 91.58 O ATOM 361 N VAL 44 -42.509 -22.822 26.426 1.00 94.38 N ATOM 362 CA VAL 44 -41.162 -22.332 26.372 1.00 94.38 C ATOM 363 CB VAL 44 -41.006 -20.874 25.987 1.00 94.38 C ATOM 364 CG1 VAL 44 -41.489 -19.950 27.118 1.00 94.38 C ATOM 365 CG2 VAL 44 -39.535 -20.630 25.603 1.00 94.38 C ATOM 366 C VAL 44 -40.565 -22.562 27.722 1.00 94.38 C ATOM 367 O VAL 44 -41.074 -22.102 28.744 1.00 94.38 O ATOM 368 N MET 45 -39.462 -23.331 27.744 1.00100.76 N ATOM 369 CA MET 45 -38.784 -23.678 28.955 1.00100.76 C ATOM 370 CB MET 45 -37.938 -24.955 28.815 1.00100.76 C ATOM 371 CG MET 45 -37.007 -24.926 27.600 1.00100.76 C ATOM 372 SD MET 45 -35.971 -26.407 27.403 1.00100.76 S ATOM 373 CE MET 45 -35.585 -26.104 25.655 1.00100.76 C ATOM 374 C MET 45 -37.881 -22.559 29.335 1.00100.76 C ATOM 375 O MET 45 -37.537 -21.684 28.541 1.00100.76 O ATOM 376 N PRO 46 -37.526 -22.580 30.585 1.00 64.55 N ATOM 377 CA PRO 46 -36.626 -21.598 31.105 1.00 64.55 C ATOM 378 CD PRO 46 -38.413 -23.100 31.609 1.00 64.55 C ATOM 379 CB PRO 46 -36.766 -21.652 32.629 1.00 64.55 C ATOM 380 CG PRO 46 -37.614 -22.908 32.906 1.00 64.55 C ATOM 381 C PRO 46 -35.259 -21.897 30.590 1.00 64.55 C ATOM 382 O PRO 46 -34.998 -23.039 30.218 1.00 64.55 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 76.95 50.0 60 88.2 68 ARMSMC SECONDARY STRUCTURE . . 62.92 61.8 34 100.0 34 ARMSMC SURFACE . . . . . . . . 79.19 50.0 50 89.3 56 ARMSMC BURIED . . . . . . . . 64.58 50.0 10 83.3 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 93.10 32.1 28 87.5 32 ARMSSC1 RELIABLE SIDE CHAINS . 94.71 32.0 25 86.2 29 ARMSSC1 SECONDARY STRUCTURE . . 95.57 29.4 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 96.60 29.2 24 88.9 27 ARMSSC1 BURIED . . . . . . . . 68.38 50.0 4 80.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.47 47.6 21 84.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 60.87 47.4 19 90.5 21 ARMSSC2 SECONDARY STRUCTURE . . 74.19 53.8 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 56.19 47.4 19 86.4 22 ARMSSC2 BURIED . . . . . . . . 116.83 50.0 2 66.7 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.71 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 69.92 71.4 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 86.76 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 87.71 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.44 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 86.44 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 90.87 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 86.44 50.0 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.36 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.36 31 88.6 35 CRMSCA CRN = ALL/NP . . . . . 0.1085 CRMSCA SECONDARY STRUCTURE . . 3.41 17 100.0 17 CRMSCA SURFACE . . . . . . . . 3.36 26 89.7 29 CRMSCA BURIED . . . . . . . . 3.38 5 83.3 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.59 153 88.4 173 CRMSMC SECONDARY STRUCTURE . . 3.72 85 100.0 85 CRMSMC SURFACE . . . . . . . . 3.58 128 89.5 143 CRMSMC BURIED . . . . . . . . 3.66 25 83.3 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 6.86 129 82.7 156 CRMSSC RELIABLE SIDE CHAINS . 6.82 117 86.0 136 CRMSSC SECONDARY STRUCTURE . . 7.03 84 100.0 84 CRMSSC SURFACE . . . . . . . . 6.82 108 85.0 127 CRMSSC BURIED . . . . . . . . 7.08 21 72.4 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 5.43 253 85.5 296 CRMSALL SECONDARY STRUCTURE . . 5.70 152 100.0 152 CRMSALL SURFACE . . . . . . . . 5.39 212 87.2 243 CRMSALL BURIED . . . . . . . . 5.63 41 77.4 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 118.672 0.942 0.944 31 88.6 35 ERRCA SECONDARY STRUCTURE . . 113.086 0.939 0.941 17 100.0 17 ERRCA SURFACE . . . . . . . . 116.232 0.942 0.944 26 89.7 29 ERRCA BURIED . . . . . . . . 131.364 0.942 0.945 5 83.3 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 118.893 0.939 0.941 153 88.4 173 ERRMC SECONDARY STRUCTURE . . 112.847 0.935 0.937 85 100.0 85 ERRMC SURFACE . . . . . . . . 116.508 0.939 0.942 128 89.5 143 ERRMC BURIED . . . . . . . . 131.107 0.938 0.941 25 83.3 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 115.776 0.895 0.901 129 82.7 156 ERRSC RELIABLE SIDE CHAINS . 118.310 0.897 0.904 117 86.0 136 ERRSC SECONDARY STRUCTURE . . 115.750 0.892 0.898 84 100.0 84 ERRSC SURFACE . . . . . . . . 117.321 0.897 0.903 108 85.0 127 ERRSC BURIED . . . . . . . . 107.831 0.885 0.893 21 72.4 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 117.202 0.918 0.922 253 85.5 296 ERRALL SECONDARY STRUCTURE . . 114.562 0.913 0.917 152 100.0 152 ERRALL SURFACE . . . . . . . . 116.807 0.919 0.923 212 87.2 243 ERRALL BURIED . . . . . . . . 119.242 0.912 0.917 41 77.4 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 2 6 13 29 31 31 35 DISTCA CA (P) 5.71 17.14 37.14 82.86 88.57 35 DISTCA CA (RMS) 0.78 1.39 2.03 3.14 3.36 DISTCA ALL (N) 8 38 82 163 239 253 296 DISTALL ALL (P) 2.70 12.84 27.70 55.07 80.74 296 DISTALL ALL (RMS) 0.77 1.48 2.14 3.15 4.79 DISTALL END of the results output