####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 30 ( 246), selected 30 , name T0548TS140_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 30 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS140_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 17 - 41 4.92 10.35 LCS_AVERAGE: 63.90 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 19 - 31 1.91 14.33 LCS_AVERAGE: 26.10 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 19 - 27 0.98 15.12 LCS_AVERAGE: 16.29 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 30 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 17 V 17 3 3 25 0 3 3 3 7 10 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT T 18 T 18 3 9 25 3 4 6 8 9 11 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT D 19 D 19 9 13 25 7 9 10 10 11 12 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT I 20 I 20 9 13 25 7 9 10 10 11 12 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT K 21 K 21 9 13 25 7 9 10 10 11 12 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT D 22 D 22 9 13 25 7 9 10 10 11 12 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT L 23 L 23 9 13 25 7 9 10 10 11 12 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT T 24 T 24 9 13 25 7 9 10 10 11 12 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT K 25 K 25 9 13 25 7 9 10 10 11 12 14 15 17 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT L 26 L 26 9 13 25 3 9 10 10 11 12 14 15 17 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT G 27 G 27 9 13 25 2 5 6 9 10 12 13 15 15 17 17 18 20 21 23 24 24 24 25 25 LCS_GDT A 28 A 28 5 13 25 4 9 10 10 11 12 14 15 16 17 19 22 23 23 23 24 24 24 25 25 LCS_GDT I 29 I 29 5 13 25 4 9 10 10 11 12 14 15 18 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT Y 30 Y 30 5 13 25 4 5 7 10 11 12 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT D 31 D 31 5 13 25 4 5 5 6 10 12 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT K 32 K 32 5 12 25 3 3 5 8 10 12 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT T 33 T 33 4 5 25 3 3 4 5 8 11 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT K 34 K 34 4 6 25 1 3 4 4 6 6 11 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT K 35 K 35 4 6 25 0 3 6 8 9 10 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT Y 36 Y 36 5 6 25 3 5 6 8 9 10 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT W 37 W 37 5 6 25 4 5 6 8 9 10 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT V 38 V 38 5 6 25 4 5 6 8 9 10 13 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT Y 39 Y 39 5 6 25 4 5 6 8 9 10 14 15 19 20 21 22 23 23 23 24 24 24 25 25 LCS_GDT Q 40 Q 40 5 6 25 4 5 6 8 9 10 12 14 19 20 20 22 23 23 23 24 24 24 25 25 LCS_GDT G 41 G 41 4 6 25 4 4 4 4 6 6 6 8 10 10 12 17 20 21 21 23 24 24 25 25 LCS_GDT K 42 K 42 4 6 10 4 4 4 4 6 6 6 8 10 10 12 14 15 15 17 18 19 20 22 25 LCS_GDT P 43 P 43 4 6 9 4 4 4 4 6 6 6 8 10 10 12 14 15 15 17 18 19 20 20 22 LCS_GDT V 44 V 44 4 6 9 4 4 4 4 6 6 6 7 7 8 8 8 9 13 17 17 19 20 20 22 LCS_GDT M 45 M 45 3 6 9 3 3 4 4 6 6 6 7 7 8 10 11 11 15 16 18 19 20 20 22 LCS_GDT P 46 P 46 3 4 9 3 3 4 4 4 5 5 7 7 8 8 8 9 9 10 11 13 14 17 17 LCS_AVERAGE LCS_A: 35.43 ( 16.29 26.10 63.90 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 9 10 10 11 12 14 15 19 20 21 22 23 23 23 24 24 24 25 25 GDT PERCENT_AT 20.00 25.71 28.57 28.57 31.43 34.29 40.00 42.86 54.29 57.14 60.00 62.86 65.71 65.71 65.71 68.57 68.57 68.57 71.43 71.43 GDT RMS_LOCAL 0.29 0.48 0.70 0.70 1.11 1.53 2.19 2.38 3.37 3.45 3.71 3.83 4.02 4.02 4.02 4.39 4.39 4.39 4.92 4.92 GDT RMS_ALL_AT 14.70 14.58 14.37 14.37 14.19 14.52 13.58 14.00 9.94 9.98 10.65 10.40 10.54 10.54 10.54 10.81 10.81 10.81 10.35 10.35 # Checking swapping # possible swapping detected: D 22 D 22 # possible swapping detected: Y 30 Y 30 # possible swapping detected: Y 36 Y 36 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 17 V 17 11.491 0 0.606 0.723 14.133 0.238 0.136 LGA T 18 T 18 7.048 0 0.587 0.576 10.391 21.786 14.898 LGA D 19 D 19 3.057 0 0.566 1.225 7.159 53.810 34.643 LGA I 20 I 20 2.156 0 0.021 1.472 4.924 73.095 63.869 LGA K 21 K 21 0.786 0 0.130 1.006 2.987 88.214 83.757 LGA D 22 D 22 1.478 0 0.064 1.008 4.817 85.952 64.345 LGA L 23 L 23 0.706 0 0.060 1.369 2.553 88.214 80.833 LGA T 24 T 24 1.149 0 0.085 1.042 3.306 79.524 75.918 LGA K 25 K 25 1.720 0 0.250 0.677 3.542 67.857 64.550 LGA L 26 L 26 1.383 0 0.581 0.785 6.505 75.357 59.048 LGA G 27 G 27 3.717 0 0.524 0.524 3.717 57.619 57.619 LGA A 28 A 28 1.736 0 0.084 0.101 2.284 68.810 68.000 LGA I 29 I 29 2.100 0 0.063 1.275 7.651 68.810 51.369 LGA Y 30 Y 30 1.743 0 0.020 0.288 4.793 72.857 57.500 LGA D 31 D 31 3.564 0 0.113 0.504 8.098 42.500 27.857 LGA K 32 K 32 3.000 0 0.058 0.867 10.600 59.167 33.862 LGA T 33 T 33 3.952 0 0.610 0.796 7.083 34.167 35.510 LGA K 34 K 34 5.648 0 0.671 0.595 9.807 16.905 14.762 LGA K 35 K 35 10.656 0 0.675 0.526 17.469 1.190 0.529 LGA Y 36 Y 36 10.825 0 0.049 1.146 15.622 0.119 0.040 LGA W 37 W 37 9.150 0 0.113 1.295 10.473 0.595 4.320 LGA V 38 V 38 11.202 0 0.205 0.247 12.860 0.119 0.068 LGA Y 39 Y 39 12.648 0 0.127 0.242 16.109 0.000 0.000 LGA Q 40 Q 40 16.769 0 0.405 1.038 20.852 0.000 0.000 LGA G 41 G 41 23.252 0 0.683 0.683 26.193 0.000 0.000 LGA K 42 K 42 27.659 0 0.102 0.981 36.148 0.000 0.000 LGA P 43 P 43 28.057 0 0.306 0.416 30.002 0.000 0.000 LGA V 44 V 44 28.686 0 0.183 1.108 29.167 0.000 0.000 LGA M 45 M 45 31.266 0 0.561 0.976 38.240 0.000 0.000 LGA P 46 P 46 28.402 0 0.555 0.564 31.615 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 30 120 120 100.00 246 246 100.00 35 SUMMARY(RMSD_GDC): 8.882 8.809 9.353 30.197 25.527 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 30 35 4.0 15 2.38 41.429 39.306 0.604 LGA_LOCAL RMSD: 2.382 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.000 Number of assigned atoms: 30 Std_ASGN_ATOMS RMSD: 8.882 Standard rmsd on all 30 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.595436 * X + 0.770503 * Y + 0.227555 * Z + -102.268982 Y_new = 0.699554 * X + -0.357956 * Y + -0.618459 * Z + -0.332545 Z_new = -0.395070 * X + 0.527440 * Y + -0.752148 * Z + 59.809738 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.865627 0.406144 2.530032 [DEG: 49.5968 23.2703 144.9602 ] ZXZ: 0.352566 2.422112 -0.642882 [DEG: 20.2005 138.7768 -36.8344 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS140_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS140_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 30 35 4.0 15 2.38 39.306 8.88 REMARK ---------------------------------------------------------- MOLECULE T0548TS140_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 137 N VAL 17 -31.258 -18.154 27.729 1.00 99.99 N ATOM 138 CA VAL 17 -32.599 -18.121 28.392 1.00 99.99 C ATOM 139 C VAL 17 -33.136 -16.731 28.397 1.00 99.99 C ATOM 140 O VAL 17 -32.408 -15.815 28.831 1.00 99.99 O ATOM 141 CB VAL 17 -32.608 -18.735 29.806 1.00 99.99 C ATOM 142 CG1 VAL 17 -34.031 -18.856 30.301 1.00 99.99 C ATOM 143 CG2 VAL 17 -31.863 -20.122 29.836 1.00 99.99 C ATOM 144 N THR 18 -34.381 -16.616 27.787 1.00 99.99 N ATOM 145 CA THR 18 -35.111 -15.347 27.679 1.00 99.99 C ATOM 146 C THR 18 -35.550 -14.858 29.013 1.00 99.99 C ATOM 147 O THR 18 -36.122 -15.608 29.794 1.00 99.99 O ATOM 148 CB THR 18 -36.353 -15.277 26.803 1.00 99.99 C ATOM 149 OG1 THR 18 -36.046 -15.956 25.595 1.00 99.99 O ATOM 150 CG2 THR 18 -36.882 -13.891 26.442 1.00 99.99 C ATOM 151 N ASP 19 -35.210 -13.576 29.304 1.00 99.99 N ATOM 152 CA ASP 19 -35.706 -12.988 30.536 1.00 99.99 C ATOM 153 C ASP 19 -37.233 -12.956 30.553 1.00 99.99 C ATOM 154 O ASP 19 -37.932 -12.540 29.591 1.00 99.99 O ATOM 155 CB ASP 19 -35.100 -11.533 30.422 1.00 99.99 C ATOM 156 CG ASP 19 -34.935 -10.858 31.777 1.00 99.99 C ATOM 157 OD1 ASP 19 -34.830 -9.606 31.912 1.00 99.99 O ATOM 158 OD2 ASP 19 -34.829 -11.590 32.825 1.00 99.99 O ATOM 159 N ILE 20 -37.867 -13.225 31.708 1.00 99.99 N ATOM 160 CA ILE 20 -39.283 -13.300 31.988 1.00 99.99 C ATOM 161 C ILE 20 -39.961 -11.896 31.733 1.00 99.99 C ATOM 162 O ILE 20 -41.066 -11.833 31.168 1.00 99.99 O ATOM 163 CB ILE 20 -39.564 -13.818 33.407 1.00 99.99 C ATOM 164 CG1 ILE 20 -41.099 -13.764 33.781 1.00 99.99 C ATOM 165 CG2 ILE 20 -38.739 -13.127 34.572 1.00 99.99 C ATOM 166 CD1 ILE 20 -42.011 -14.679 32.950 1.00 99.99 C ATOM 167 N LYS 21 -39.319 -10.751 31.981 1.00 99.99 N ATOM 168 CA LYS 21 -39.706 -9.405 31.536 1.00 99.99 C ATOM 169 C LYS 21 -40.047 -9.323 29.981 1.00 99.99 C ATOM 170 O LYS 21 -41.176 -9.225 29.601 1.00 99.99 O ATOM 171 CB LYS 21 -38.570 -8.451 31.894 1.00 99.99 C ATOM 172 CG LYS 21 -38.836 -7.013 31.337 1.00 99.99 C ATOM 173 CD LYS 21 -37.928 -5.901 31.904 1.00 99.99 C ATOM 174 CE LYS 21 -36.420 -6.144 31.742 1.00 99.99 C ATOM 175 NZ LYS 21 -35.586 -4.997 32.226 1.00 99.99 N ATOM 176 N ASP 22 -39.082 -9.522 29.061 1.00 99.99 N ATOM 177 CA ASP 22 -39.244 -9.731 27.627 1.00 99.99 C ATOM 178 C ASP 22 -40.188 -10.896 27.214 1.00 99.99 C ATOM 179 O ASP 22 -40.851 -10.675 26.130 1.00 99.99 O ATOM 180 CB ASP 22 -37.871 -9.992 26.994 1.00 99.99 C ATOM 181 CG ASP 22 -37.977 -10.105 25.414 1.00 99.99 C ATOM 182 OD1 ASP 22 -37.577 -11.068 24.813 1.00 99.99 O ATOM 183 OD2 ASP 22 -38.476 -9.114 24.833 1.00 99.99 O ATOM 184 N LEU 23 -40.158 -12.037 27.791 1.00 99.99 N ATOM 185 CA LEU 23 -41.069 -13.113 27.503 1.00 99.99 C ATOM 186 C LEU 23 -42.552 -12.727 27.605 1.00 99.99 C ATOM 187 O LEU 23 -43.363 -13.171 26.786 1.00 99.99 O ATOM 188 CB LEU 23 -40.789 -14.301 28.444 1.00 99.99 C ATOM 189 CG LEU 23 -41.768 -15.490 28.152 1.00 99.99 C ATOM 190 CD1 LEU 23 -41.541 -16.069 26.745 1.00 99.99 C ATOM 191 CD2 LEU 23 -41.576 -16.723 29.066 1.00 99.99 C ATOM 192 N THR 24 -42.833 -11.830 28.536 1.00 99.99 N ATOM 193 CA THR 24 -44.195 -11.262 28.823 1.00 99.99 C ATOM 194 C THR 24 -44.580 -10.089 27.983 1.00 99.99 C ATOM 195 O THR 24 -45.759 -9.827 27.778 1.00 99.99 O ATOM 196 CB THR 24 -44.410 -10.986 30.379 1.00 99.99 C ATOM 197 OG1 THR 24 -43.950 -12.106 31.133 1.00 99.99 O ATOM 198 CG2 THR 24 -45.888 -10.800 30.713 1.00 99.99 C ATOM 199 N LYS 25 -43.594 -9.393 27.266 1.00 99.99 N ATOM 200 CA LYS 25 -43.814 -8.383 26.180 1.00 99.99 C ATOM 201 C LYS 25 -44.137 -9.089 24.882 1.00 99.99 C ATOM 202 O LYS 25 -45.270 -9.025 24.412 1.00 99.99 O ATOM 203 CB LYS 25 -42.604 -7.368 26.194 1.00 99.99 C ATOM 204 CG LYS 25 -42.673 -6.497 27.494 1.00 99.99 C ATOM 205 CD LYS 25 -41.797 -5.269 27.271 1.00 99.99 C ATOM 206 CE LYS 25 -40.281 -5.597 26.971 1.00 99.99 C ATOM 207 NZ LYS 25 -39.457 -4.303 26.877 1.00 99.99 N ATOM 208 N LEU 26 -43.161 -9.817 24.289 1.00 99.99 N ATOM 209 CA LEU 26 -43.158 -10.455 22.989 1.00 99.99 C ATOM 210 C LEU 26 -42.774 -11.910 23.252 1.00 99.99 C ATOM 211 O LEU 26 -41.600 -12.224 23.459 1.00 99.99 O ATOM 212 CB LEU 26 -42.136 -9.833 22.024 1.00 99.99 C ATOM 213 CG LEU 26 -42.288 -10.108 20.545 1.00 99.99 C ATOM 214 CD1 LEU 26 -42.430 -11.595 20.134 1.00 99.99 C ATOM 215 CD2 LEU 26 -43.522 -9.455 19.988 1.00 99.99 C ATOM 216 N GLY 27 -43.696 -12.901 23.183 1.00 99.99 N ATOM 217 CA GLY 27 -43.527 -14.349 23.089 1.00 99.99 C ATOM 218 C GLY 27 -44.783 -15.117 23.497 1.00 99.99 C ATOM 219 O GLY 27 -45.617 -15.372 22.649 1.00 99.99 O ATOM 220 N ALA 28 -44.867 -15.499 24.749 1.00 99.99 N ATOM 221 CA ALA 28 -45.897 -16.302 25.229 1.00 99.99 C ATOM 222 C ALA 28 -46.422 -15.978 26.620 1.00 99.99 C ATOM 223 O ALA 28 -45.871 -15.158 27.413 1.00 99.99 O ATOM 224 CB ALA 28 -45.415 -17.763 25.130 1.00 99.99 C ATOM 225 N ILE 29 -47.610 -16.528 26.939 1.00 99.99 N ATOM 226 CA ILE 29 -48.310 -16.421 28.223 1.00 99.99 C ATOM 227 C ILE 29 -49.057 -17.662 28.585 1.00 99.99 C ATOM 228 O ILE 29 -49.662 -18.334 27.787 1.00 99.99 O ATOM 229 CB ILE 29 -49.236 -15.220 28.163 1.00 99.99 C ATOM 230 CG1 ILE 29 -49.521 -14.759 29.600 1.00 99.99 C ATOM 231 CG2 ILE 29 -50.608 -15.480 27.499 1.00 99.99 C ATOM 232 CD1 ILE 29 -50.026 -13.323 29.690 1.00 99.99 C ATOM 233 N TYR 30 -48.953 -18.098 29.837 1.00 99.99 N ATOM 234 CA TYR 30 -49.688 -19.189 30.479 1.00 99.99 C ATOM 235 C TYR 30 -51.119 -18.798 30.781 1.00 99.99 C ATOM 236 O TYR 30 -51.402 -17.764 31.410 1.00 99.99 O ATOM 237 CB TYR 30 -48.904 -19.671 31.768 1.00 99.99 C ATOM 238 CG TYR 30 -49.736 -20.717 32.613 1.00 99.99 C ATOM 239 CD1 TYR 30 -50.633 -20.310 33.619 1.00 99.99 C ATOM 240 CD2 TYR 30 -49.653 -22.059 32.285 1.00 99.99 C ATOM 241 CE1 TYR 30 -51.425 -21.256 34.252 1.00 99.99 C ATOM 242 CE2 TYR 30 -50.471 -23.039 32.924 1.00 99.99 C ATOM 243 CZ TYR 30 -51.412 -22.627 33.893 1.00 99.99 C ATOM 244 OH TYR 30 -52.253 -23.495 34.505 1.00 99.99 H ATOM 245 N ASP 31 -52.086 -19.604 30.334 1.00 99.99 N ATOM 246 CA ASP 31 -53.521 -19.408 30.716 1.00 99.99 C ATOM 247 C ASP 31 -54.414 -20.652 30.718 1.00 99.99 C ATOM 248 O ASP 31 -55.058 -21.042 29.721 1.00 99.99 O ATOM 249 CB ASP 31 -54.031 -18.315 29.712 1.00 99.99 C ATOM 250 CG ASP 31 -55.443 -17.808 30.315 1.00 99.99 C ATOM 251 OD1 ASP 31 -55.654 -17.641 31.509 1.00 99.99 O ATOM 252 OD2 ASP 31 -56.350 -17.706 29.422 1.00 99.99 O ATOM 253 N LYS 32 -54.435 -21.418 31.835 1.00 99.99 N ATOM 254 CA LYS 32 -54.788 -22.878 31.847 1.00 99.99 C ATOM 255 C LYS 32 -53.704 -23.639 31.196 1.00 99.99 C ATOM 256 O LYS 32 -52.997 -24.513 31.758 1.00 99.99 O ATOM 257 CB LYS 32 -56.182 -23.215 31.326 1.00 99.99 C ATOM 258 CG LYS 32 -56.703 -24.496 31.954 1.00 99.99 C ATOM 259 CD LYS 32 -56.986 -24.320 33.492 1.00 99.99 C ATOM 260 CE LYS 32 -57.947 -25.397 34.082 1.00 99.99 C ATOM 261 NZ LYS 32 -58.081 -25.095 35.618 1.00 99.99 N ATOM 262 N THR 33 -53.368 -23.391 29.918 1.00 99.99 N ATOM 263 CA THR 33 -52.165 -23.877 29.145 1.00 99.99 C ATOM 264 C THR 33 -51.547 -22.790 28.310 1.00 99.99 C ATOM 265 O THR 33 -51.960 -21.618 28.258 1.00 99.99 O ATOM 266 CB THR 33 -52.587 -24.995 28.114 1.00 99.99 C ATOM 267 OG1 THR 33 -53.715 -24.665 27.350 1.00 99.99 O ATOM 268 CG2 THR 33 -52.942 -26.238 28.974 1.00 99.99 C ATOM 269 N LYS 34 -50.374 -23.007 27.709 1.00 99.99 N ATOM 270 CA LYS 34 -49.428 -22.109 27.061 1.00 99.99 C ATOM 271 C LYS 34 -50.070 -21.509 25.746 1.00 99.99 C ATOM 272 O LYS 34 -50.693 -22.265 25.007 1.00 99.99 O ATOM 273 CB LYS 34 -48.158 -22.884 26.702 1.00 99.99 C ATOM 274 CG LYS 34 -47.066 -22.023 25.935 1.00 99.99 C ATOM 275 CD LYS 34 -45.809 -22.882 25.926 1.00 99.99 C ATOM 276 CE LYS 34 -44.586 -22.209 25.283 1.00 99.99 C ATOM 277 NZ LYS 34 -43.416 -23.101 25.248 1.00 99.99 N ATOM 278 N LYS 35 -49.814 -20.227 25.535 1.00 99.99 N ATOM 279 CA LYS 35 -50.274 -19.468 24.378 1.00 99.99 C ATOM 280 C LYS 35 -49.218 -18.538 23.848 1.00 99.99 C ATOM 281 O LYS 35 -48.582 -17.937 24.669 1.00 99.99 O ATOM 282 CB LYS 35 -51.564 -18.766 24.781 1.00 99.99 C ATOM 283 CG LYS 35 -52.656 -19.811 24.961 1.00 99.99 C ATOM 284 CD LYS 35 -54.072 -19.172 25.178 1.00 99.99 C ATOM 285 CE LYS 35 -55.089 -20.347 25.190 1.00 99.99 C ATOM 286 NZ LYS 35 -56.441 -19.782 25.402 1.00 99.99 N ATOM 287 N TYR 36 -49.140 -18.342 22.531 1.00 99.99 N ATOM 288 CA TYR 36 -48.356 -17.208 21.950 1.00 99.99 C ATOM 289 C TYR 36 -49.063 -15.829 22.194 1.00 99.99 C ATOM 290 O TYR 36 -50.327 -15.768 22.214 1.00 99.99 O ATOM 291 CB TYR 36 -48.205 -17.571 20.486 1.00 99.99 C ATOM 292 CG TYR 36 -47.276 -16.731 19.637 1.00 99.99 C ATOM 293 CD1 TYR 36 -45.925 -17.136 19.623 1.00 99.99 C ATOM 294 CD2 TYR 36 -47.606 -15.578 18.962 1.00 99.99 C ATOM 295 CE1 TYR 36 -44.883 -16.294 19.077 1.00 99.99 C ATOM 296 CE2 TYR 36 -46.650 -14.827 18.280 1.00 99.99 C ATOM 297 CZ TYR 36 -45.261 -15.150 18.363 1.00 99.99 C ATOM 298 OH TYR 36 -44.347 -14.497 17.656 1.00 99.99 H ATOM 299 N TRP 37 -48.263 -14.738 22.299 1.00 99.99 N ATOM 300 CA TRP 37 -48.692 -13.481 22.985 1.00 99.99 C ATOM 301 C TRP 37 -47.829 -12.219 22.774 1.00 99.99 C ATOM 302 O TRP 37 -46.599 -12.225 22.742 1.00 99.99 O ATOM 303 CB TRP 37 -48.865 -13.820 24.488 1.00 99.99 C ATOM 304 CG TRP 37 -48.884 -12.684 25.440 1.00 99.99 C ATOM 305 CD1 TRP 37 -47.794 -12.130 25.929 1.00 99.99 C ATOM 306 CD2 TRP 37 -50.015 -11.862 25.997 1.00 99.99 C ATOM 307 NE1 TRP 37 -48.090 -11.003 26.631 1.00 99.99 N ATOM 308 CE2 TRP 37 -49.436 -10.845 26.774 1.00 99.99 C ATOM 309 CE3 TRP 37 -51.423 -11.995 25.934 1.00 99.99 C ATOM 310 CZ2 TRP 37 -50.228 -9.973 27.499 1.00 99.99 C ATOM 311 CZ3 TRP 37 -52.228 -11.187 26.780 1.00 99.99 C ATOM 312 CH2 TRP 37 -51.588 -10.189 27.525 1.00 99.99 H ATOM 313 N VAL 38 -48.628 -11.162 22.410 1.00 99.99 N ATOM 314 CA VAL 38 -48.170 -9.934 21.727 1.00 99.99 C ATOM 315 C VAL 38 -48.682 -8.595 22.407 1.00 99.99 C ATOM 316 O VAL 38 -49.872 -8.172 22.229 1.00 99.99 O ATOM 317 CB VAL 38 -48.554 -9.942 20.185 1.00 99.99 C ATOM 318 CG1 VAL 38 -47.846 -8.704 19.544 1.00 99.99 C ATOM 319 CG2 VAL 38 -47.976 -11.245 19.506 1.00 99.99 C ATOM 320 N TYR 39 -47.811 -7.971 23.252 1.00 99.99 N ATOM 321 CA TYR 39 -47.969 -6.679 23.895 1.00 99.99 C ATOM 322 C TYR 39 -47.125 -5.508 23.326 1.00 99.99 C ATOM 323 O TYR 39 -45.902 -5.537 23.416 1.00 99.99 O ATOM 324 CB TYR 39 -47.770 -6.842 25.419 1.00 99.99 C ATOM 325 CG TYR 39 -48.314 -5.626 26.106 1.00 99.99 C ATOM 326 CD1 TYR 39 -47.412 -4.523 26.433 1.00 99.99 C ATOM 327 CD2 TYR 39 -49.648 -5.482 26.367 1.00 99.99 C ATOM 328 CE1 TYR 39 -47.938 -3.447 27.154 1.00 99.99 C ATOM 329 CE2 TYR 39 -50.147 -4.348 26.990 1.00 99.99 C ATOM 330 CZ TYR 39 -49.335 -3.299 27.357 1.00 99.99 C ATOM 331 OH TYR 39 -49.910 -2.177 27.826 1.00 99.99 H ATOM 332 N GLN 40 -47.786 -4.427 22.889 1.00 99.99 N ATOM 333 CA GLN 40 -47.256 -3.266 22.122 1.00 99.99 C ATOM 334 C GLN 40 -47.992 -1.979 22.541 1.00 99.99 C ATOM 335 O GLN 40 -49.214 -1.919 22.439 1.00 99.99 O ATOM 336 CB GLN 40 -47.337 -3.568 20.594 1.00 99.99 C ATOM 337 CG GLN 40 -48.651 -3.977 19.956 1.00 99.99 C ATOM 338 CD GLN 40 -48.510 -4.177 18.409 1.00 99.99 C ATOM 339 OE1 GLN 40 -48.401 -5.317 17.946 1.00 99.99 O ATOM 340 NE2 GLN 40 -48.476 -3.087 17.650 1.00 99.99 N ATOM 341 N GLY 41 -47.258 -0.944 22.873 1.00 99.99 N ATOM 342 CA GLY 41 -47.715 0.348 23.301 1.00 99.99 C ATOM 343 C GLY 41 -46.611 1.455 23.150 1.00 99.99 C ATOM 344 O GLY 41 -45.783 1.359 22.197 1.00 99.99 O ATOM 345 N LYS 42 -46.564 2.490 24.002 1.00 99.99 N ATOM 346 CA LYS 42 -45.401 3.442 24.299 1.00 99.99 C ATOM 347 C LYS 42 -45.258 3.642 25.749 1.00 99.99 C ATOM 348 O LYS 42 -46.264 3.990 26.345 1.00 99.99 O ATOM 349 CB LYS 42 -45.674 4.732 23.511 1.00 99.99 C ATOM 350 CG LYS 42 -44.429 5.677 23.735 1.00 99.99 C ATOM 351 CD LYS 42 -44.526 6.826 22.741 1.00 99.99 C ATOM 352 CE LYS 42 -43.276 7.715 22.904 1.00 99.99 C ATOM 353 NZ LYS 42 -43.191 8.712 21.850 1.00 99.99 N ATOM 354 N PRO 43 -44.040 3.543 26.378 1.00 99.99 N ATOM 355 CA PRO 43 -43.901 3.435 27.810 1.00 99.99 C ATOM 356 C PRO 43 -44.184 4.808 28.570 1.00 99.99 C ATOM 357 O PRO 43 -43.215 5.452 28.897 1.00 99.99 O ATOM 358 CB PRO 43 -42.560 2.755 28.096 1.00 99.99 C ATOM 359 CG PRO 43 -41.727 3.041 26.869 1.00 99.99 C ATOM 360 CD PRO 43 -42.798 2.966 25.771 1.00 99.99 C ATOM 361 N VAL 44 -45.435 5.077 28.997 1.00 99.99 N ATOM 362 CA VAL 44 -45.835 6.038 30.048 1.00 99.99 C ATOM 363 C VAL 44 -46.801 5.454 31.074 1.00 99.99 C ATOM 364 O VAL 44 -47.163 4.330 30.875 1.00 99.99 O ATOM 365 CB VAL 44 -46.393 7.260 29.325 1.00 99.99 C ATOM 366 CG1 VAL 44 -45.354 8.002 28.455 1.00 99.99 C ATOM 367 CG2 VAL 44 -47.622 6.935 28.435 1.00 99.99 C ATOM 368 N MET 45 -47.112 6.167 32.114 1.00 99.99 N ATOM 369 CA MET 45 -47.962 5.729 33.244 1.00 99.99 C ATOM 370 C MET 45 -48.919 4.556 32.944 1.00 99.99 C ATOM 371 O MET 45 -48.703 3.467 33.498 1.00 99.99 O ATOM 372 CB MET 45 -48.655 6.951 33.922 1.00 99.99 C ATOM 373 CG MET 45 -49.607 6.597 35.177 1.00 99.99 C ATOM 374 SD MET 45 -48.727 5.861 36.584 1.00 99.99 S ATOM 375 CE MET 45 -48.033 7.322 37.356 1.00 99.99 C ATOM 376 N PRO 46 -50.033 4.677 32.207 1.00 99.99 N ATOM 377 CA PRO 46 -51.004 3.599 31.999 1.00 99.99 C ATOM 378 C PRO 46 -50.375 2.334 31.380 1.00 99.99 C ATOM 379 O PRO 46 -50.590 1.279 31.970 1.00 99.99 O ATOM 380 CB PRO 46 -52.104 4.192 31.076 1.00 99.99 C ATOM 381 CG PRO 46 -51.471 5.410 30.445 1.00 99.99 C ATOM 382 CD PRO 46 -50.468 5.889 31.460 1.00 99.99 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 246 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 80.92 48.3 58 85.3 68 ARMSMC SECONDARY STRUCTURE . . 63.44 63.6 33 97.1 34 ARMSMC SURFACE . . . . . . . . 86.81 47.9 48 85.7 56 ARMSMC BURIED . . . . . . . . 42.47 50.0 10 83.3 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.60 37.0 27 84.4 32 ARMSSC1 RELIABLE SIDE CHAINS . 79.22 33.3 24 82.8 29 ARMSSC1 SECONDARY STRUCTURE . . 81.35 47.1 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 73.99 39.1 23 85.2 27 ARMSSC1 BURIED . . . . . . . . 101.09 25.0 4 80.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.13 42.9 21 84.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 66.02 47.4 19 90.5 21 ARMSSC2 SECONDARY STRUCTURE . . 74.03 46.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 59.90 47.4 19 86.4 22 ARMSSC2 BURIED . . . . . . . . 132.50 0.0 2 66.7 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.22 50.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 83.41 57.1 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 118.90 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 88.22 50.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 50.68 83.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 50.68 83.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 87.49 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 50.68 83.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.88 (Number of atoms: 30) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.88 30 85.7 35 CRMSCA CRN = ALL/NP . . . . . 0.2961 CRMSCA SECONDARY STRUCTURE . . 5.67 17 100.0 17 CRMSCA SURFACE . . . . . . . . 8.94 25 86.2 29 CRMSCA BURIED . . . . . . . . 8.57 5 83.3 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.91 148 85.5 173 CRMSMC SECONDARY STRUCTURE . . 5.93 85 100.0 85 CRMSMC SURFACE . . . . . . . . 8.94 123 86.0 143 CRMSMC BURIED . . . . . . . . 8.74 25 83.3 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.00 126 80.8 156 CRMSSC RELIABLE SIDE CHAINS . 9.90 114 83.8 136 CRMSSC SECONDARY STRUCTURE . . 7.46 84 100.0 84 CRMSSC SURFACE . . . . . . . . 10.25 105 82.7 127 CRMSSC BURIED . . . . . . . . 8.68 21 72.4 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.44 246 83.1 296 CRMSALL SECONDARY STRUCTURE . . 6.81 152 100.0 152 CRMSALL SURFACE . . . . . . . . 9.59 205 84.4 243 CRMSALL BURIED . . . . . . . . 8.62 41 77.4 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.223 0.859 0.870 30 85.7 35 ERRCA SECONDARY STRUCTURE . . 94.738 0.901 0.906 17 100.0 17 ERRCA SURFACE . . . . . . . . 92.163 0.858 0.869 25 86.2 29 ERRCA BURIED . . . . . . . . 92.521 0.864 0.874 5 83.3 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.195 0.858 0.870 148 85.5 173 ERRMC SECONDARY STRUCTURE . . 94.552 0.898 0.903 85 100.0 85 ERRMC SURFACE . . . . . . . . 92.152 0.857 0.869 123 86.0 143 ERRMC BURIED . . . . . . . . 92.404 0.862 0.873 25 83.3 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.008 0.838 0.852 126 80.8 156 ERRSC RELIABLE SIDE CHAINS . 91.127 0.840 0.854 114 83.8 136 ERRSC SECONDARY STRUCTURE . . 92.975 0.870 0.879 84 100.0 84 ERRSC SURFACE . . . . . . . . 90.785 0.834 0.849 105 82.7 127 ERRSC BURIED . . . . . . . . 92.120 0.856 0.867 21 72.4 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.623 0.848 0.861 246 83.1 296 ERRALL SECONDARY STRUCTURE . . 93.705 0.883 0.890 152 100.0 152 ERRALL SURFACE . . . . . . . . 91.479 0.846 0.859 205 84.4 243 ERRALL BURIED . . . . . . . . 92.343 0.860 0.871 41 77.4 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 9 24 30 35 DISTCA CA (P) 0.00 0.00 0.00 25.71 68.57 35 DISTCA CA (RMS) 0.00 0.00 0.00 3.87 6.36 DISTCA ALL (N) 0 0 4 58 176 246 296 DISTALL ALL (P) 0.00 0.00 1.35 19.59 59.46 296 DISTALL ALL (RMS) 0.00 0.00 2.57 3.90 6.42 DISTALL END of the results output