####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS127_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS127_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 18 - 36 4.74 10.29 LONGEST_CONTINUOUS_SEGMENT: 19 19 - 37 4.79 10.33 LCS_AVERAGE: 47.02 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 25 - 34 1.69 10.81 LCS_AVERAGE: 20.73 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 12 - 18 0.92 10.71 LCS_AVERAGE: 15.10 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 7 7 11 4 6 7 8 10 11 12 12 12 12 14 16 18 20 22 23 27 28 29 30 LCS_GDT F 13 F 13 7 7 11 4 6 7 7 10 11 12 12 12 12 14 16 18 20 22 23 27 28 29 30 LCS_GDT H 14 H 14 7 7 13 4 6 7 8 10 11 12 12 12 12 14 16 18 20 22 23 27 28 29 30 LCS_GDT Y 15 Y 15 7 7 13 3 6 7 8 10 11 12 12 12 12 14 16 18 20 22 23 27 28 29 30 LCS_GDT T 16 T 16 7 7 13 3 6 7 8 10 11 12 12 12 12 13 16 18 20 22 23 27 28 29 30 LCS_GDT V 17 V 17 7 7 18 4 6 7 8 10 11 12 12 12 12 13 16 18 20 22 23 27 28 29 30 LCS_GDT T 18 T 18 7 7 19 1 3 7 8 10 11 12 12 12 12 13 16 18 20 22 23 27 28 29 30 LCS_GDT D 19 D 19 3 4 19 3 3 3 4 6 7 9 11 12 16 17 18 19 20 22 23 27 28 29 30 LCS_GDT I 20 I 20 3 5 19 3 5 9 11 12 13 14 15 16 16 17 18 19 19 22 23 27 28 29 30 LCS_GDT K 21 K 21 3 5 19 3 5 9 11 12 13 14 15 16 16 17 18 19 20 22 23 27 28 29 30 LCS_GDT D 22 D 22 3 5 19 3 5 9 11 12 13 14 15 16 16 17 18 19 20 22 23 27 28 29 30 LCS_GDT L 23 L 23 5 6 19 3 4 4 5 5 5 6 7 8 11 17 18 18 19 20 20 24 26 27 29 LCS_GDT T 24 T 24 5 6 19 3 4 4 5 6 9 10 14 16 16 17 18 19 20 22 23 27 28 29 30 LCS_GDT K 25 K 25 5 10 19 3 4 6 10 12 13 14 15 16 16 17 18 19 20 22 23 27 28 29 30 LCS_GDT L 26 L 26 5 10 19 3 5 9 11 12 13 14 15 16 16 17 18 19 20 22 23 27 28 29 30 LCS_GDT G 27 G 27 5 10 19 3 4 6 8 12 13 14 15 16 16 17 18 19 20 22 23 27 28 29 30 LCS_GDT A 28 A 28 5 10 19 3 5 7 11 12 13 14 15 16 16 17 18 19 20 22 23 27 28 29 30 LCS_GDT I 29 I 29 6 10 19 3 5 9 11 12 13 14 15 16 16 17 18 19 20 22 23 27 28 29 30 LCS_GDT Y 30 Y 30 6 10 19 3 5 7 11 12 13 14 15 16 16 17 18 19 20 22 23 27 28 29 30 LCS_GDT D 31 D 31 6 10 19 3 5 9 11 12 13 14 15 16 16 17 18 19 20 22 23 27 28 29 30 LCS_GDT K 32 K 32 6 10 19 3 5 9 11 12 13 14 15 16 16 17 18 19 19 20 21 26 28 29 30 LCS_GDT T 33 T 33 6 10 19 3 5 9 11 12 13 14 15 16 16 17 18 19 19 20 21 26 27 29 30 LCS_GDT K 34 K 34 6 10 19 3 5 9 11 12 13 14 15 16 16 17 18 19 20 22 23 27 28 29 30 LCS_GDT K 35 K 35 4 5 19 3 3 5 6 7 10 12 12 12 16 16 18 19 20 22 23 27 28 29 30 LCS_GDT Y 36 Y 36 4 5 19 3 3 5 8 10 11 12 12 12 12 13 15 18 20 22 23 27 28 29 30 LCS_GDT W 37 W 37 4 5 19 1 3 5 8 10 11 12 12 12 12 13 15 18 19 21 23 27 28 29 30 LCS_GDT V 38 V 38 4 5 13 0 3 5 6 10 11 12 12 12 12 13 15 18 19 19 22 24 24 25 30 LCS_GDT Y 39 Y 39 3 5 13 0 3 4 6 7 11 12 12 12 12 13 13 18 19 20 22 24 24 25 29 LCS_GDT Q 40 Q 40 3 7 13 3 3 4 4 5 6 7 8 8 11 13 15 18 19 21 23 27 28 29 30 LCS_GDT G 41 G 41 6 7 13 4 4 6 6 6 6 7 8 8 10 11 14 15 19 21 23 27 28 29 30 LCS_GDT K 42 K 42 6 7 13 4 5 6 6 6 6 8 10 12 12 16 16 18 20 22 23 27 28 29 30 LCS_GDT P 43 P 43 6 7 13 4 5 6 6 6 7 8 13 15 16 17 18 19 20 22 23 27 28 29 30 LCS_GDT V 44 V 44 6 7 13 4 5 6 6 7 13 14 15 16 16 17 18 19 20 22 23 25 26 28 30 LCS_GDT M 45 M 45 6 7 13 3 5 6 6 6 11 12 15 16 16 17 18 19 19 20 20 23 24 27 27 LCS_GDT P 46 P 46 6 7 13 3 5 6 6 6 6 7 7 7 8 12 12 14 15 18 18 20 21 21 22 LCS_AVERAGE LCS_A: 27.62 ( 15.10 20.73 47.02 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 6 9 11 12 13 14 15 16 16 17 18 19 20 22 23 27 28 29 30 GDT PERCENT_AT 11.43 17.14 25.71 31.43 34.29 37.14 40.00 42.86 45.71 45.71 48.57 51.43 54.29 57.14 62.86 65.71 77.14 80.00 82.86 85.71 GDT RMS_LOCAL 0.30 0.60 1.15 1.29 1.43 1.66 2.06 2.39 2.59 2.59 2.87 3.23 3.57 5.23 5.63 5.83 6.45 6.66 6.85 7.02 GDT RMS_ALL_AT 11.93 12.24 10.97 10.97 10.98 11.01 10.84 10.86 10.91 10.91 10.83 10.73 10.62 8.73 8.75 8.73 8.41 8.42 8.45 8.47 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: D 19 D 19 # possible swapping detected: Y 30 Y 30 # possible swapping detected: D 31 D 31 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 19.110 0 0.576 1.076 20.172 0.000 0.000 LGA F 13 F 13 16.781 0 0.120 0.803 17.326 0.000 0.000 LGA H 14 H 14 18.023 0 0.244 1.132 24.028 0.000 0.000 LGA Y 15 Y 15 16.065 0 0.181 0.778 18.167 0.000 0.000 LGA T 16 T 16 17.129 0 0.038 1.212 19.511 0.000 0.000 LGA V 17 V 17 14.941 0 0.606 0.663 18.710 0.000 0.000 LGA T 18 T 18 12.583 0 0.585 0.522 16.543 0.714 0.408 LGA D 19 D 19 8.031 0 0.277 1.258 9.882 15.714 10.833 LGA I 20 I 20 1.553 0 0.199 1.236 5.252 63.690 51.429 LGA K 21 K 21 1.414 0 0.255 0.653 6.483 69.286 55.450 LGA D 22 D 22 2.093 0 0.564 0.986 3.480 61.190 69.167 LGA L 23 L 23 7.805 0 0.256 0.286 12.646 10.833 5.595 LGA T 24 T 24 4.834 0 0.066 1.265 7.645 43.929 32.925 LGA K 25 K 25 2.853 0 0.080 1.075 5.448 63.333 49.048 LGA L 26 L 26 0.721 0 0.221 0.238 3.239 79.643 71.369 LGA G 27 G 27 2.903 0 0.202 0.202 2.908 59.048 59.048 LGA A 28 A 28 2.780 0 0.139 0.147 2.931 59.048 58.667 LGA I 29 I 29 2.578 0 0.162 1.154 4.599 62.857 52.560 LGA Y 30 Y 30 2.024 0 0.058 1.277 7.792 68.810 49.841 LGA D 31 D 31 1.356 0 0.214 1.191 4.652 83.810 70.298 LGA K 32 K 32 2.071 0 0.598 1.326 5.373 63.452 53.704 LGA T 33 T 33 1.368 0 0.539 0.450 2.376 81.548 75.510 LGA K 34 K 34 0.981 0 0.402 1.277 8.993 77.381 45.185 LGA K 35 K 35 6.828 0 0.391 0.803 11.786 14.762 8.360 LGA Y 36 Y 36 9.889 0 0.208 1.142 14.524 2.381 0.794 LGA W 37 W 37 11.251 0 0.103 1.407 16.705 0.000 0.000 LGA V 38 V 38 16.841 0 0.614 1.306 19.646 0.000 0.000 LGA Y 39 Y 39 20.410 0 0.563 0.512 27.559 0.000 0.000 LGA Q 40 Q 40 21.182 0 0.491 1.200 24.994 0.000 0.000 LGA G 41 G 41 16.523 0 0.580 0.580 18.075 0.000 0.000 LGA K 42 K 42 12.214 0 0.102 0.506 19.691 1.548 0.688 LGA P 43 P 43 6.125 0 0.057 0.251 10.311 18.214 12.041 LGA V 44 V 44 3.689 0 0.137 0.198 7.609 42.024 30.680 LGA M 45 M 45 4.356 0 0.117 1.185 7.218 29.405 26.548 LGA P 46 P 46 10.265 0 0.064 0.373 12.413 1.905 1.293 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 8.349 8.355 9.453 30.701 25.470 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 15 2.39 39.286 35.447 0.602 LGA_LOCAL RMSD: 2.393 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.855 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 8.349 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.755839 * X + -0.516335 * Y + 0.402623 * Z + 48.403469 Y_new = 0.009142 * X + -0.606538 * Y + -0.795002 * Z + -57.212894 Z_new = 0.654693 * X + 0.604574 * Y + -0.453725 * Z + 29.866049 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.012094 -0.713777 2.214609 [DEG: 0.6929 -40.8964 126.8878 ] ZXZ: 0.468789 2.041738 0.825177 [DEG: 26.8596 116.9829 47.2792 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS127_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS127_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 15 2.39 35.447 8.35 REMARK ---------------------------------------------------------- MOLECULE T0548TS127_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REFINED REMARK PARENT 3L2T_A ATOM 87 N HIS 12 -58.748 -28.641 26.313 1.00 0.00 N ATOM 88 CA HIS 12 -59.318 -28.547 27.677 1.00 0.00 C ATOM 89 C HIS 12 -58.172 -28.141 28.594 1.00 0.00 C ATOM 90 O HIS 12 -58.319 -28.328 29.809 1.00 0.00 O ATOM 91 CB HIS 12 -59.901 -29.912 28.213 1.00 0.00 C ATOM 92 CG HIS 12 -59.201 -30.957 29.124 1.00 0.00 C ATOM 93 ND1 HIS 12 -58.174 -31.997 28.861 1.00 0.00 N ATOM 94 CD2 HIS 12 -59.528 -30.933 30.535 1.00 0.00 C ATOM 95 CE1 HIS 12 -57.960 -32.473 30.089 1.00 0.00 C ATOM 96 NE2 HIS 12 -58.747 -31.958 30.980 1.00 0.00 N ATOM 97 N PHE 13 -57.383 -27.109 28.159 1.00 0.00 N ATOM 98 CA PHE 13 -56.270 -26.771 28.902 1.00 0.00 C ATOM 99 C PHE 13 -56.058 -25.286 28.425 1.00 0.00 C ATOM 100 O PHE 13 -55.792 -25.110 27.259 1.00 0.00 O ATOM 101 CB PHE 13 -55.239 -27.566 28.067 1.00 0.00 C ATOM 102 CG PHE 13 -55.159 -29.097 28.366 1.00 0.00 C ATOM 103 CD1 PHE 13 -55.479 -29.654 29.609 1.00 0.00 C ATOM 104 CD2 PHE 13 -54.846 -29.939 27.293 1.00 0.00 C ATOM 105 CE1 PHE 13 -55.480 -31.044 29.762 1.00 0.00 C ATOM 106 CE2 PHE 13 -54.849 -31.322 27.454 1.00 0.00 C ATOM 107 CZ PHE 13 -55.167 -31.878 28.688 1.00 0.00 C ATOM 108 N HIS 14 -55.984 -24.217 29.270 1.00 0.00 N ATOM 109 CA HIS 14 -55.904 -22.859 28.654 1.00 0.00 C ATOM 110 C HIS 14 -54.417 -22.521 28.206 1.00 0.00 C ATOM 111 O HIS 14 -53.545 -23.432 28.321 1.00 0.00 O ATOM 112 CB HIS 14 -56.551 -21.865 29.582 1.00 0.00 C ATOM 113 CG HIS 14 -58.026 -21.892 29.621 1.00 0.00 C ATOM 114 ND1 HIS 14 -58.849 -20.843 29.358 1.00 0.00 N ATOM 115 CD2 HIS 14 -58.811 -22.951 29.915 1.00 0.00 C ATOM 116 CE1 HIS 14 -60.091 -21.248 29.518 1.00 0.00 C ATOM 117 NE2 HIS 14 -60.133 -22.509 29.829 1.00 0.00 N ATOM 118 N TYR 15 -54.377 -21.728 27.134 1.00 0.00 N ATOM 119 CA TYR 15 -53.098 -21.256 26.572 1.00 0.00 C ATOM 120 C TYR 15 -53.171 -19.739 26.601 1.00 0.00 C ATOM 121 O TYR 15 -53.855 -19.114 25.759 1.00 0.00 O ATOM 122 CB TYR 15 -53.087 -21.725 25.124 1.00 0.00 C ATOM 123 CG TYR 15 -52.935 -23.227 25.006 1.00 0.00 C ATOM 124 CD1 TYR 15 -51.653 -23.770 25.078 1.00 0.00 C ATOM 125 CD2 TYR 15 -54.061 -24.044 24.865 1.00 0.00 C ATOM 126 CE1 TYR 15 -51.422 -25.142 25.034 1.00 0.00 C ATOM 127 CE2 TYR 15 -53.850 -25.427 24.810 1.00 0.00 C ATOM 128 CZ TYR 15 -52.552 -25.946 24.884 1.00 0.00 C ATOM 129 OH TYR 15 -52.298 -27.295 24.814 1.00 0.00 H ATOM 130 N THR 16 -52.577 -19.138 27.618 1.00 0.00 N ATOM 131 CA THR 16 -52.562 -17.704 27.823 1.00 0.00 C ATOM 132 C THR 16 -51.156 -17.134 27.444 1.00 0.00 C ATOM 133 O THR 16 -50.175 -17.886 27.274 1.00 0.00 O ATOM 134 CB THR 16 -53.139 -17.230 29.213 1.00 0.00 C ATOM 135 OG1 THR 16 -54.526 -17.683 29.381 1.00 0.00 O ATOM 136 CG2 THR 16 -53.072 -15.697 29.354 1.00 0.00 C ATOM 137 N VAL 17 -51.091 -15.838 27.129 1.00 0.00 N ATOM 138 CA VAL 17 -49.877 -15.144 26.728 1.00 0.00 C ATOM 139 C VAL 17 -49.454 -14.038 27.731 1.00 0.00 C ATOM 140 O VAL 17 -50.310 -13.155 27.948 1.00 0.00 O ATOM 141 CB VAL 17 -50.142 -14.515 25.359 1.00 0.00 C ATOM 142 CG1 VAL 17 -48.910 -13.741 24.864 1.00 0.00 C ATOM 143 CG2 VAL 17 -50.493 -15.540 24.283 1.00 0.00 C ATOM 144 N THR 18 -48.457 -14.230 28.597 1.00 0.00 N ATOM 145 CA THR 18 -48.171 -13.180 29.497 1.00 0.00 C ATOM 146 C THR 18 -46.657 -12.807 29.719 1.00 0.00 C ATOM 147 O THR 18 -46.012 -13.563 30.458 1.00 0.00 O ATOM 148 CB THR 18 -48.792 -13.518 30.884 1.00 0.00 C ATOM 149 OG1 THR 18 -50.217 -13.750 30.901 1.00 0.00 O ATOM 150 CG2 THR 18 -48.530 -12.434 31.977 1.00 0.00 C ATOM 151 N ASP 19 -46.157 -11.666 29.165 1.00 0.00 N ATOM 152 CA ASP 19 -44.786 -11.227 29.575 1.00 0.00 C ATOM 153 C ASP 19 -43.290 -11.272 29.581 1.00 0.00 C ATOM 154 O ASP 19 -42.657 -10.315 29.169 1.00 0.00 O ATOM 155 CB ASP 19 -44.316 -12.425 28.581 1.00 0.00 C ATOM 156 CG ASP 19 -43.405 -13.847 29.084 1.00 0.00 C ATOM 157 OD1 ASP 19 -43.506 -14.357 30.211 1.00 0.00 O ATOM 158 OD2 ASP 19 -42.444 -14.216 28.363 1.00 0.00 O ATOM 159 N ILE 20 -42.980 -11.892 30.756 1.00 0.00 N ATOM 160 CA ILE 20 -41.721 -12.277 31.318 1.00 0.00 C ATOM 161 C ILE 20 -40.790 -11.186 31.727 1.00 0.00 C ATOM 162 O ILE 20 -39.739 -11.549 32.302 1.00 0.00 O ATOM 163 CB ILE 20 -40.940 -13.315 30.459 1.00 0.00 C ATOM 164 CG1 ILE 20 -39.903 -14.134 31.157 1.00 0.00 C ATOM 165 CG2 ILE 20 -40.272 -12.638 29.252 1.00 0.00 C ATOM 166 CD1 ILE 20 -40.484 -15.095 32.202 1.00 0.00 C ATOM 167 N LYS 21 -41.435 -10.127 32.162 1.00 0.00 N ATOM 168 CA LYS 21 -40.669 -8.988 32.466 1.00 0.00 C ATOM 169 C LYS 21 -39.481 -8.849 31.426 1.00 0.00 C ATOM 170 O LYS 21 -38.697 -7.908 31.629 1.00 0.00 O ATOM 171 CB LYS 21 -40.199 -9.071 33.916 1.00 0.00 C ATOM 172 CG LYS 21 -39.404 -7.896 34.436 1.00 0.00 C ATOM 173 CD LYS 21 -38.881 -8.171 35.829 1.00 0.00 C ATOM 174 CE LYS 21 -37.942 -7.045 36.187 1.00 0.00 C ATOM 175 NZ LYS 21 -37.341 -7.208 37.488 1.00 0.00 N ATOM 176 N ASP 22 -39.526 -9.444 30.224 1.00 0.00 N ATOM 177 CA ASP 22 -38.371 -9.330 29.332 1.00 0.00 C ATOM 178 C ASP 22 -38.737 -8.451 28.101 1.00 0.00 C ATOM 179 O ASP 22 -39.267 -8.937 27.093 1.00 0.00 O ATOM 180 CB ASP 22 -37.842 -10.712 28.948 1.00 0.00 C ATOM 181 CG ASP 22 -36.705 -10.688 27.926 1.00 0.00 C ATOM 182 OD1 ASP 22 -36.117 -9.621 27.634 1.00 0.00 O ATOM 183 OD2 ASP 22 -36.369 -11.828 27.477 1.00 0.00 O ATOM 184 N LEU 23 -38.354 -7.218 28.234 1.00 0.00 N ATOM 185 CA LEU 23 -38.528 -6.147 27.262 1.00 0.00 C ATOM 186 C LEU 23 -40.011 -5.862 26.784 1.00 0.00 C ATOM 187 O LEU 23 -40.149 -4.931 25.984 1.00 0.00 O ATOM 188 CB LEU 23 -37.602 -6.436 26.099 1.00 0.00 C ATOM 189 CG LEU 23 -36.138 -6.461 26.376 1.00 0.00 C ATOM 190 CD1 LEU 23 -35.365 -7.034 25.208 1.00 0.00 C ATOM 191 CD2 LEU 23 -35.651 -5.071 26.625 1.00 0.00 C ATOM 192 N THR 24 -41.060 -6.389 27.447 1.00 0.00 N ATOM 193 CA THR 24 -42.462 -6.234 27.082 1.00 0.00 C ATOM 194 C THR 24 -42.861 -6.978 25.748 1.00 0.00 C ATOM 195 O THR 24 -43.859 -7.708 25.746 1.00 0.00 O ATOM 196 CB THR 24 -42.852 -4.719 27.144 1.00 0.00 C ATOM 197 OG1 THR 24 -42.946 -4.237 28.523 1.00 0.00 O ATOM 198 CG2 THR 24 -44.127 -4.426 26.331 1.00 0.00 C ATOM 199 N LYS 25 -42.147 -6.716 24.656 1.00 0.00 N ATOM 200 CA LYS 25 -42.403 -7.261 23.326 1.00 0.00 C ATOM 201 C LYS 25 -42.406 -8.825 23.271 1.00 0.00 C ATOM 202 O LYS 25 -43.198 -9.341 22.489 1.00 0.00 O ATOM 203 CB LYS 25 -41.474 -6.621 22.275 1.00 0.00 C ATOM 204 CG LYS 25 -40.025 -7.222 22.346 1.00 0.00 C ATOM 205 CD LYS 25 -38.862 -6.374 21.830 1.00 0.00 C ATOM 206 CE LYS 25 -38.438 -5.397 22.923 1.00 0.00 C ATOM 207 NZ LYS 25 -37.079 -4.970 22.667 1.00 0.00 N ATOM 208 N LEU 26 -41.561 -9.559 24.027 1.00 0.00 N ATOM 209 CA LEU 26 -41.517 -11.008 23.913 1.00 0.00 C ATOM 210 C LEU 26 -42.894 -11.652 24.248 1.00 0.00 C ATOM 211 O LEU 26 -43.445 -12.275 23.314 1.00 0.00 O ATOM 212 CB LEU 26 -40.391 -11.547 24.812 1.00 0.00 C ATOM 213 CG LEU 26 -40.157 -13.048 24.621 1.00 0.00 C ATOM 214 CD1 LEU 26 -39.701 -13.282 23.172 1.00 0.00 C ATOM 215 CD2 LEU 26 -39.145 -13.562 25.661 1.00 0.00 C ATOM 216 N GLY 27 -43.491 -11.458 25.461 1.00 0.00 N ATOM 217 CA GLY 27 -44.798 -12.021 25.695 1.00 0.00 C ATOM 218 C GLY 27 -44.845 -13.593 25.626 1.00 0.00 C ATOM 219 O GLY 27 -45.623 -14.073 24.798 1.00 0.00 O ATOM 220 N ALA 28 -43.935 -14.341 26.243 1.00 0.00 N ATOM 221 CA ALA 28 -43.996 -15.815 26.154 1.00 0.00 C ATOM 222 C ALA 28 -45.419 -16.364 26.415 1.00 0.00 C ATOM 223 O ALA 28 -46.044 -16.019 27.461 1.00 0.00 O ATOM 224 CB ALA 28 -42.925 -16.515 27.001 1.00 0.00 C ATOM 225 N ILE 29 -45.736 -17.402 25.695 1.00 0.00 N ATOM 226 CA ILE 29 -47.027 -18.151 25.737 1.00 0.00 C ATOM 227 C ILE 29 -46.919 -19.289 26.832 1.00 0.00 C ATOM 228 O ILE 29 -46.129 -20.203 26.660 1.00 0.00 O ATOM 229 CB ILE 29 -47.290 -18.798 24.326 1.00 0.00 C ATOM 230 CG1 ILE 29 -47.313 -17.619 23.292 1.00 0.00 C ATOM 231 CG2 ILE 29 -48.633 -19.609 24.297 1.00 0.00 C ATOM 232 CD1 ILE 29 -47.335 -18.066 21.796 1.00 0.00 C ATOM 233 N TYR 30 -47.427 -18.988 28.014 1.00 0.00 N ATOM 234 CA TYR 30 -47.522 -19.883 29.183 1.00 0.00 C ATOM 235 C TYR 30 -48.863 -20.539 29.074 1.00 0.00 C ATOM 236 O TYR 30 -49.863 -19.784 29.082 1.00 0.00 O ATOM 237 CB TYR 30 -47.595 -18.942 30.424 1.00 0.00 C ATOM 238 CG TYR 30 -46.204 -18.428 30.740 1.00 0.00 C ATOM 239 CD1 TYR 30 -45.673 -17.319 30.073 1.00 0.00 C ATOM 240 CD2 TYR 30 -45.432 -19.049 31.713 1.00 0.00 C ATOM 241 CE1 TYR 30 -44.392 -16.858 30.371 1.00 0.00 C ATOM 242 CE2 TYR 30 -44.152 -18.600 32.024 1.00 0.00 C ATOM 243 CZ TYR 30 -43.646 -17.504 31.349 1.00 0.00 C ATOM 244 OH TYR 30 -42.393 -17.066 31.668 1.00 0.00 H ATOM 245 N ASP 31 -48.911 -21.841 28.938 1.00 0.00 N ATOM 246 CA ASP 31 -50.200 -22.444 28.894 1.00 0.00 C ATOM 247 C ASP 31 -50.989 -22.031 30.115 1.00 0.00 C ATOM 248 O ASP 31 -50.344 -21.892 31.209 1.00 0.00 O ATOM 249 CB ASP 31 -50.102 -23.919 28.734 1.00 0.00 C ATOM 250 CG ASP 31 -49.529 -24.455 27.484 1.00 0.00 C ATOM 251 OD1 ASP 31 -49.362 -23.764 26.491 1.00 0.00 O ATOM 252 OD2 ASP 31 -49.108 -25.671 27.578 1.00 0.00 O ATOM 253 N LYS 32 -52.154 -21.484 29.827 1.00 0.00 N ATOM 254 CA LYS 32 -52.960 -21.259 30.982 1.00 0.00 C ATOM 255 C LYS 32 -53.192 -22.655 31.455 1.00 0.00 C ATOM 256 O LYS 32 -53.963 -23.377 30.887 1.00 0.00 O ATOM 257 CB LYS 32 -54.309 -20.480 30.721 1.00 0.00 C ATOM 258 CG LYS 32 -54.804 -19.907 32.092 1.00 0.00 C ATOM 259 CD LYS 32 -55.869 -20.894 32.568 1.00 0.00 C ATOM 260 CE LYS 32 -56.881 -20.265 33.499 1.00 0.00 C ATOM 261 NZ LYS 32 -56.304 -20.079 34.863 1.00 0.00 N ATOM 262 N THR 33 -52.741 -22.822 32.633 1.00 0.00 N ATOM 263 CA THR 33 -52.763 -24.155 33.083 1.00 0.00 C ATOM 264 C THR 33 -51.879 -25.146 32.240 1.00 0.00 C ATOM 265 O THR 33 -52.540 -25.721 31.448 1.00 0.00 O ATOM 266 CB THR 33 -54.243 -24.696 33.173 1.00 0.00 C ATOM 267 OG1 THR 33 -55.276 -23.853 33.077 1.00 0.00 O ATOM 268 CG2 THR 33 -54.384 -25.517 34.466 1.00 0.00 C ATOM 269 N LYS 34 -50.609 -24.859 31.821 1.00 0.00 N ATOM 270 CA LYS 34 -49.682 -25.670 31.011 1.00 0.00 C ATOM 271 C LYS 34 -50.392 -26.787 30.187 1.00 0.00 C ATOM 272 O LYS 34 -50.118 -27.947 30.517 1.00 0.00 O ATOM 273 CB LYS 34 -48.508 -26.181 31.769 1.00 0.00 C ATOM 274 CG LYS 34 -48.924 -27.123 32.943 1.00 0.00 C ATOM 275 CD LYS 34 -47.687 -27.514 33.750 1.00 0.00 C ATOM 276 CE LYS 34 -47.837 -28.962 34.220 1.00 0.00 C ATOM 277 NZ LYS 34 -47.944 -29.865 33.074 1.00 0.00 N ATOM 278 N LYS 35 -51.364 -26.530 29.262 1.00 0.00 N ATOM 279 CA LYS 35 -51.980 -27.686 28.587 1.00 0.00 C ATOM 280 C LYS 35 -52.514 -28.612 29.754 1.00 0.00 C ATOM 281 O LYS 35 -52.028 -29.725 29.977 1.00 0.00 O ATOM 282 CB LYS 35 -50.894 -28.275 27.763 1.00 0.00 C ATOM 283 CG LYS 35 -51.129 -29.790 27.521 1.00 0.00 C ATOM 284 CD LYS 35 -50.263 -30.501 26.529 1.00 0.00 C ATOM 285 CE LYS 35 -49.748 -29.629 25.410 1.00 0.00 C ATOM 286 NZ LYS 35 -48.533 -30.291 24.846 1.00 0.00 N ATOM 287 N TYR 36 -53.382 -28.087 30.616 1.00 0.00 N ATOM 288 CA TYR 36 -53.868 -28.704 31.891 1.00 0.00 C ATOM 289 C TYR 36 -52.704 -28.718 32.822 1.00 0.00 C ATOM 290 O TYR 36 -51.781 -29.568 32.682 1.00 0.00 O ATOM 291 CB TYR 36 -54.317 -30.104 31.892 1.00 0.00 C ATOM 292 CG TYR 36 -54.725 -30.717 33.156 1.00 0.00 C ATOM 293 CD1 TYR 36 -55.854 -30.254 33.823 1.00 0.00 C ATOM 294 CD2 TYR 36 -53.949 -31.721 33.735 1.00 0.00 C ATOM 295 CE1 TYR 36 -56.217 -30.787 35.060 1.00 0.00 C ATOM 296 CE2 TYR 36 -54.304 -32.257 34.978 1.00 0.00 C ATOM 297 CZ TYR 36 -55.445 -31.793 35.640 1.00 0.00 C ATOM 298 OH TYR 36 -55.847 -32.341 36.854 1.00 0.00 H ATOM 299 N TRP 37 -52.637 -27.533 33.483 1.00 0.00 N ATOM 300 CA TRP 37 -51.433 -27.550 34.298 1.00 0.00 C ATOM 301 C TRP 37 -52.008 -27.972 35.610 1.00 0.00 C ATOM 302 O TRP 37 -53.081 -27.445 36.066 1.00 0.00 O ATOM 303 CB TRP 37 -50.797 -26.516 35.099 1.00 0.00 C ATOM 304 CG TRP 37 -51.432 -25.534 35.864 1.00 0.00 C ATOM 305 CD1 TRP 37 -52.236 -24.487 35.630 1.00 0.00 C ATOM 306 CD2 TRP 37 -51.418 -25.704 37.298 1.00 0.00 C ATOM 307 NE1 TRP 37 -52.778 -24.033 36.788 1.00 0.00 N ATOM 308 CE2 TRP 37 -52.332 -24.776 37.823 1.00 0.00 C ATOM 309 CE3 TRP 37 -50.816 -26.614 38.177 1.00 0.00 C ATOM 310 CZ2 TRP 37 -52.507 -24.587 39.187 1.00 0.00 C ATOM 311 CZ3 TRP 37 -51.077 -26.504 39.544 1.00 0.00 C ATOM 312 CH2 TRP 37 -51.913 -25.493 40.046 1.00 0.00 H ATOM 313 N VAL 38 -51.853 -29.281 35.845 1.00 0.00 N ATOM 314 CA VAL 38 -52.167 -29.922 37.058 1.00 0.00 C ATOM 315 C VAL 38 -50.947 -29.636 38.022 1.00 0.00 C ATOM 316 O VAL 38 -51.177 -29.358 39.231 1.00 0.00 O ATOM 317 CB VAL 38 -52.480 -31.380 36.867 1.00 0.00 C ATOM 318 CG1 VAL 38 -51.412 -32.094 36.006 1.00 0.00 C ATOM 319 CG2 VAL 38 -52.634 -32.114 38.225 1.00 0.00 C ATOM 320 N TYR 39 -49.696 -29.767 37.457 1.00 0.00 N ATOM 321 CA TYR 39 -48.516 -29.570 38.326 1.00 0.00 C ATOM 322 C TYR 39 -48.376 -28.029 38.689 1.00 0.00 C ATOM 323 O TYR 39 -48.463 -27.690 39.876 1.00 0.00 O ATOM 324 CB TYR 39 -47.211 -30.146 37.731 1.00 0.00 C ATOM 325 CG TYR 39 -45.982 -29.856 38.546 1.00 0.00 C ATOM 326 CD1 TYR 39 -45.660 -30.755 39.578 1.00 0.00 C ATOM 327 CD2 TYR 39 -45.135 -28.778 38.386 1.00 0.00 C ATOM 328 CE1 TYR 39 -44.519 -30.618 40.386 1.00 0.00 C ATOM 329 CE2 TYR 39 -44.004 -28.585 39.190 1.00 0.00 C ATOM 330 CZ TYR 39 -43.700 -29.531 40.185 1.00 0.00 C ATOM 331 OH TYR 39 -42.607 -29.408 40.984 1.00 0.00 H ATOM 332 N GLN 40 -48.218 -27.179 37.654 1.00 0.00 N ATOM 333 CA GLN 40 -47.993 -25.720 37.817 1.00 0.00 C ATOM 334 C GLN 40 -48.120 -24.949 36.465 1.00 0.00 C ATOM 335 O GLN 40 -47.772 -25.524 35.422 1.00 0.00 O ATOM 336 CB GLN 40 -46.618 -25.528 38.494 1.00 0.00 C ATOM 337 CG GLN 40 -46.372 -24.053 38.919 1.00 0.00 C ATOM 338 CD GLN 40 -45.010 -23.867 39.542 1.00 0.00 C ATOM 339 OE1 GLN 40 -44.806 -23.646 40.738 1.00 0.00 O ATOM 340 NE2 GLN 40 -44.009 -23.964 38.669 1.00 0.00 N ATOM 341 N GLY 41 -48.413 -23.630 36.426 1.00 0.00 N ATOM 342 CA GLY 41 -48.398 -22.980 35.114 1.00 0.00 C ATOM 343 C GLY 41 -46.930 -23.118 34.598 1.00 0.00 C ATOM 344 O GLY 41 -46.026 -22.636 35.329 1.00 0.00 O ATOM 345 N LYS 42 -46.683 -23.289 33.324 1.00 0.00 N ATOM 346 CA LYS 42 -45.313 -23.427 32.809 1.00 0.00 C ATOM 347 C LYS 42 -45.281 -22.878 31.419 1.00 0.00 C ATOM 348 O LYS 42 -46.086 -23.339 30.600 1.00 0.00 O ATOM 349 CB LYS 42 -45.059 -24.894 32.754 1.00 0.00 C ATOM 350 CG LYS 42 -45.165 -25.616 34.084 1.00 0.00 C ATOM 351 CD LYS 42 -44.350 -26.865 34.207 1.00 0.00 C ATOM 352 CE LYS 42 -44.499 -27.436 35.579 1.00 0.00 C ATOM 353 NZ LYS 42 -43.875 -28.753 35.634 1.00 0.00 N ATOM 354 N PRO 43 -44.429 -21.864 31.073 1.00 0.00 N ATOM 355 CA PRO 43 -44.445 -21.491 29.696 1.00 0.00 C ATOM 356 C PRO 43 -44.085 -22.680 28.774 1.00 0.00 C ATOM 357 O PRO 43 -43.178 -23.465 29.072 1.00 0.00 O ATOM 358 CB PRO 43 -43.389 -20.399 29.447 1.00 0.00 C ATOM 359 CG PRO 43 -42.452 -20.512 30.666 1.00 0.00 C ATOM 360 CD PRO 43 -43.211 -21.270 31.744 1.00 0.00 C ATOM 361 N VAL 44 -44.485 -22.459 27.492 1.00 0.00 N ATOM 362 CA VAL 44 -44.225 -23.334 26.320 1.00 0.00 C ATOM 363 C VAL 44 -43.407 -22.477 25.333 1.00 0.00 C ATOM 364 O VAL 44 -43.993 -21.675 24.580 1.00 0.00 O ATOM 365 CB VAL 44 -45.557 -23.812 25.693 1.00 0.00 C ATOM 366 CG1 VAL 44 -45.302 -24.924 24.667 1.00 0.00 C ATOM 367 CG2 VAL 44 -46.488 -24.332 26.783 1.00 0.00 C ATOM 368 N MET 45 -42.123 -22.732 25.203 1.00 0.00 N ATOM 369 CA MET 45 -41.141 -21.955 24.381 1.00 0.00 C ATOM 370 C MET 45 -41.245 -22.220 22.825 1.00 0.00 C ATOM 371 O MET 45 -41.512 -23.403 22.581 1.00 0.00 O ATOM 372 CB MET 45 -39.691 -22.178 24.815 1.00 0.00 C ATOM 373 CG MET 45 -39.346 -21.946 26.224 1.00 0.00 C ATOM 374 SD MET 45 -39.242 -20.159 26.503 1.00 0.00 S ATOM 375 CE MET 45 -37.660 -19.779 25.760 1.00 0.00 C ATOM 376 N PRO 46 -41.439 -21.250 21.825 1.00 0.00 N ATOM 377 CA PRO 46 -41.330 -21.805 20.535 1.00 0.00 C ATOM 378 C PRO 46 -40.223 -22.907 20.365 1.00 0.00 C ATOM 379 O PRO 46 -39.324 -23.097 21.198 1.00 0.00 O ATOM 380 CB PRO 46 -41.246 -20.724 19.491 1.00 0.00 C ATOM 381 CG PRO 46 -40.460 -19.783 20.362 1.00 0.00 C ATOM 382 CD PRO 46 -41.005 -19.674 21.652 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 81.02 39.7 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 89.81 26.5 34 100.0 34 ARMSMC SURFACE . . . . . . . . 82.81 41.1 56 100.0 56 ARMSMC BURIED . . . . . . . . 72.06 33.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 90.81 37.5 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 92.92 34.5 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 93.19 35.3 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 93.88 33.3 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 72.01 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.11 48.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 70.60 42.9 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 53.54 69.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 65.30 50.0 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 92.35 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.37 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 60.40 71.4 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 12.50 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 65.37 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.27 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 82.27 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 92.17 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 82.27 50.0 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.35 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.35 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2385 CRMSCA SECONDARY STRUCTURE . . 7.74 17 100.0 17 CRMSCA SURFACE . . . . . . . . 8.27 29 100.0 29 CRMSCA BURIED . . . . . . . . 8.74 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.52 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 7.89 85 100.0 85 CRMSMC SURFACE . . . . . . . . 8.42 143 100.0 143 CRMSMC BURIED . . . . . . . . 8.94 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.47 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 10.60 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 10.57 84 100.0 84 CRMSSC SURFACE . . . . . . . . 10.18 127 100.0 127 CRMSSC BURIED . . . . . . . . 11.66 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.53 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 9.39 152 100.0 152 CRMSALL SURFACE . . . . . . . . 9.31 243 100.0 243 CRMSALL BURIED . . . . . . . . 10.50 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.732 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 7.461 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 7.585 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 8.445 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.823 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 7.567 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 7.679 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 8.512 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.737 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 9.829 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 10.067 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 9.434 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 11.062 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.766 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 8.865 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 8.520 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 9.894 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 5 28 35 35 DISTCA CA (P) 0.00 0.00 2.86 14.29 80.00 35 DISTCA CA (RMS) 0.00 0.00 2.93 4.41 6.68 DISTCA ALL (N) 0 0 1 36 209 296 296 DISTALL ALL (P) 0.00 0.00 0.34 12.16 70.61 296 DISTALL ALL (RMS) 0.00 0.00 2.93 4.34 7.00 DISTALL END of the results output