####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS117_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS117_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 30 12 - 41 4.59 9.65 LONGEST_CONTINUOUS_SEGMENT: 30 13 - 42 4.78 9.33 LCS_AVERAGE: 80.57 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 15 - 34 1.96 10.56 LONGEST_CONTINUOUS_SEGMENT: 20 16 - 35 1.83 10.37 LCS_AVERAGE: 44.33 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 16 - 28 0.86 10.19 LONGEST_CONTINUOUS_SEGMENT: 13 17 - 29 0.90 10.43 LCS_AVERAGE: 22.53 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 4 4 30 3 4 4 5 6 7 8 8 8 21 23 23 24 25 27 28 29 29 29 29 LCS_GDT F 13 F 13 4 16 30 3 4 4 5 6 7 13 20 20 21 23 23 25 26 27 28 29 29 29 29 LCS_GDT H 14 H 14 5 19 30 3 5 13 15 16 17 19 21 21 23 25 25 27 27 28 28 29 29 29 29 LCS_GDT Y 15 Y 15 5 20 30 3 4 13 15 15 17 20 21 21 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT T 16 T 16 13 20 30 4 10 13 15 18 20 20 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT V 17 V 17 13 20 30 8 11 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT T 18 T 18 13 20 30 8 11 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT D 19 D 19 13 20 30 8 11 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT I 20 I 20 13 20 30 8 11 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT K 21 K 21 13 20 30 8 11 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT D 22 D 22 13 20 30 8 11 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT L 23 L 23 13 20 30 8 11 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT T 24 T 24 13 20 30 8 11 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT K 25 K 25 13 20 30 5 11 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT L 26 L 26 13 20 30 5 10 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT G 27 G 27 13 20 30 5 10 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT A 28 A 28 13 20 30 4 10 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT I 29 I 29 13 20 30 3 9 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT Y 30 Y 30 5 20 30 3 4 7 7 17 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT D 31 D 31 5 20 30 3 4 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT K 32 K 32 5 20 30 3 4 7 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT T 33 T 33 4 20 30 7 11 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT K 34 K 34 4 20 30 7 11 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT K 35 K 35 4 20 30 3 4 5 7 15 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT Y 36 Y 36 4 10 30 3 4 5 8 15 19 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT W 37 W 37 4 10 30 4 4 5 8 13 19 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT V 38 V 38 4 10 30 4 4 4 6 13 19 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT Y 39 Y 39 4 10 30 4 4 4 6 13 17 20 21 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT Q 40 Q 40 4 8 30 4 4 4 8 14 19 22 24 25 25 26 26 27 27 28 28 29 29 29 29 LCS_GDT G 41 G 41 4 6 30 4 4 5 6 6 6 7 10 14 23 26 26 27 27 28 28 28 29 29 29 LCS_GDT K 42 K 42 5 6 30 4 4 5 6 6 6 7 9 15 17 20 23 25 27 27 28 28 29 29 29 LCS_GDT P 43 P 43 5 6 29 4 4 5 6 6 6 7 8 9 11 12 13 14 16 17 22 22 24 27 27 LCS_GDT V 44 V 44 5 6 10 4 4 5 6 6 6 7 8 9 11 12 13 14 15 16 18 18 18 20 21 LCS_GDT M 45 M 45 5 6 9 4 4 5 6 6 6 7 8 9 11 12 13 13 14 16 17 17 18 20 20 LCS_GDT P 46 P 46 5 6 9 4 4 5 6 6 6 7 8 9 9 12 13 13 14 16 17 17 17 17 17 LCS_AVERAGE LCS_A: 49.14 ( 22.53 44.33 80.57 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 11 13 15 18 20 22 24 25 25 26 26 27 27 28 28 29 29 29 29 GDT PERCENT_AT 22.86 31.43 37.14 42.86 51.43 57.14 62.86 68.57 71.43 71.43 74.29 74.29 77.14 77.14 80.00 80.00 82.86 82.86 82.86 82.86 GDT RMS_LOCAL 0.23 0.61 0.86 1.08 1.51 1.83 2.49 2.60 2.75 2.75 3.04 3.04 3.35 3.35 3.73 3.73 4.18 4.18 4.18 4.18 GDT RMS_ALL_AT 10.42 11.10 10.19 10.37 10.51 10.37 9.84 9.80 9.71 9.71 9.69 9.69 9.73 9.73 9.52 9.52 9.94 9.94 9.94 9.94 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 30 Y 30 # possible swapping detected: Y 39 Y 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 13.218 0 0.459 1.151 13.804 0.000 0.143 LGA F 13 F 13 12.574 0 0.036 1.052 20.622 0.714 0.260 LGA H 14 H 14 9.260 0 0.576 0.508 11.421 1.786 0.762 LGA Y 15 Y 15 7.276 0 0.666 0.876 15.001 18.690 6.984 LGA T 16 T 16 3.652 0 0.343 1.247 5.295 47.857 43.469 LGA V 17 V 17 2.260 0 0.082 0.083 2.632 66.905 68.299 LGA T 18 T 18 1.613 0 0.102 1.010 4.016 75.000 68.980 LGA D 19 D 19 1.747 0 0.050 0.147 3.004 77.143 68.214 LGA I 20 I 20 1.061 0 0.010 0.639 2.199 85.952 79.464 LGA K 21 K 21 0.965 0 0.063 0.682 3.570 85.952 80.212 LGA D 22 D 22 1.572 0 0.028 0.146 2.147 72.976 73.988 LGA L 23 L 23 1.638 0 0.059 1.369 2.875 72.857 73.155 LGA T 24 T 24 2.054 0 0.061 0.084 2.440 66.786 65.918 LGA K 25 K 25 2.865 0 0.037 0.849 3.793 59.048 55.714 LGA L 26 L 26 2.118 0 0.062 1.403 4.425 68.810 64.345 LGA G 27 G 27 1.627 0 0.308 0.308 2.016 70.833 70.833 LGA A 28 A 28 1.718 0 0.064 0.062 2.193 70.952 73.048 LGA I 29 I 29 2.659 0 0.154 1.322 8.214 73.452 51.667 LGA Y 30 Y 30 2.248 0 0.040 1.308 10.691 65.119 29.444 LGA D 31 D 31 2.512 0 0.086 0.192 5.323 59.167 48.393 LGA K 32 K 32 2.288 0 0.216 0.752 7.484 64.881 47.143 LGA T 33 T 33 2.196 0 0.566 0.805 3.623 63.095 59.660 LGA K 34 K 34 2.938 0 0.686 0.873 10.182 67.143 37.778 LGA K 35 K 35 2.721 0 0.574 0.765 13.587 54.048 29.577 LGA Y 36 Y 36 3.600 0 0.123 1.527 4.639 55.833 51.706 LGA W 37 W 37 3.912 0 0.098 1.298 11.391 37.262 17.619 LGA V 38 V 38 3.544 0 0.169 0.213 5.164 39.167 39.252 LGA Y 39 Y 39 5.434 0 0.020 1.208 13.172 26.667 10.794 LGA Q 40 Q 40 4.832 0 0.402 0.788 6.811 23.333 25.556 LGA G 41 G 41 9.183 0 0.671 0.671 10.947 2.143 2.143 LGA K 42 K 42 13.631 0 0.116 0.613 15.514 0.000 0.000 LGA P 43 P 43 18.617 0 0.168 0.348 19.871 0.000 0.000 LGA V 44 V 44 20.631 0 0.043 0.064 24.924 0.000 0.000 LGA M 45 M 45 27.203 0 0.082 1.253 33.221 0.000 0.000 LGA P 46 P 46 30.273 0 0.101 0.115 32.704 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 8.820 8.847 9.583 44.959 38.415 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 24 2.60 55.714 55.280 0.888 LGA_LOCAL RMSD: 2.602 Number of atoms: 24 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.801 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 8.820 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.229819 * X + -0.943928 * Y + 0.237028 * Z + -25.102385 Y_new = 0.467749 * X + -0.106447 * Y + -0.877428 * Z + -19.103754 Z_new = 0.853460 * X + 0.312519 * Y + 0.417058 * Z + 49.289745 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.114110 -1.022589 0.643080 [DEG: 63.8338 -58.5900 36.8458 ] ZXZ: 0.263842 1.140590 1.219782 [DEG: 15.1171 65.3510 69.8883 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS117_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS117_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 24 2.60 55.280 8.82 REMARK ---------------------------------------------------------- MOLECULE T0548TS117_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 79 N HIS 12 -37.766 -19.700 41.568 1.00 0.00 N ATOM 80 CA HIS 12 -38.552 -19.858 42.785 1.00 0.00 C ATOM 81 C HIS 12 -39.536 -18.701 43.013 1.00 0.00 C ATOM 82 O HIS 12 -39.631 -18.138 44.104 1.00 0.00 O ATOM 83 CB HIS 12 -37.637 -19.921 44.010 1.00 0.00 C ATOM 84 CG HIS 12 -36.692 -21.082 43.998 1.00 0.00 C ATOM 85 ND1 HIS 12 -37.116 -22.388 44.112 1.00 0.00 N ATOM 86 CD2 HIS 12 -35.250 -21.247 43.887 1.00 0.00 C ATOM 87 CE1 HIS 12 -36.046 -23.202 44.070 1.00 0.00 C ATOM 88 NE2 HIS 12 -34.924 -22.524 43.934 1.00 0.00 N ATOM 89 N PHE 13 -40.295 -18.323 41.979 1.00 0.00 N ATOM 90 CA PHE 13 -41.254 -17.228 42.046 1.00 0.00 C ATOM 91 C PHE 13 -42.324 -17.527 41.002 1.00 0.00 C ATOM 92 O PHE 13 -42.030 -18.016 39.909 1.00 0.00 O ATOM 93 CB PHE 13 -40.567 -15.895 41.743 1.00 0.00 C ATOM 94 CG PHE 13 -41.494 -14.714 41.786 1.00 0.00 C ATOM 95 CD1 PHE 13 -41.817 -14.111 42.990 1.00 0.00 C ATOM 96 CD2 PHE 13 -42.042 -14.203 40.622 1.00 0.00 C ATOM 97 CE1 PHE 13 -42.669 -13.024 43.028 1.00 0.00 C ATOM 98 CE2 PHE 13 -42.894 -13.116 40.661 1.00 0.00 C ATOM 99 CZ PHE 13 -43.207 -12.526 41.858 1.00 0.00 C ATOM 100 N HIS 14 -43.580 -17.228 41.346 1.00 0.00 N ATOM 101 CA HIS 14 -44.736 -17.489 40.496 1.00 0.00 C ATOM 102 C HIS 14 -44.640 -16.929 39.074 1.00 0.00 C ATOM 103 O HIS 14 -44.763 -17.677 38.104 1.00 0.00 O ATOM 104 CB HIS 14 -45.998 -16.875 41.105 1.00 0.00 C ATOM 105 CG HIS 14 -47.231 -17.086 40.283 1.00 0.00 C ATOM 106 ND1 HIS 14 -47.609 -16.226 39.274 1.00 0.00 N ATOM 107 CD2 HIS 14 -48.292 -18.081 40.238 1.00 0.00 C ATOM 108 CE1 HIS 14 -48.749 -16.675 38.720 1.00 0.00 C ATOM 109 NE2 HIS 14 -49.165 -17.788 39.293 1.00 0.00 N ATOM 110 N TYR 15 -44.422 -15.618 38.914 1.00 0.00 N ATOM 111 CA TYR 15 -44.218 -15.030 37.594 1.00 0.00 C ATOM 112 C TYR 15 -42.750 -14.941 37.173 1.00 0.00 C ATOM 113 O TYR 15 -42.446 -14.805 35.987 1.00 0.00 O ATOM 114 CB TYR 15 -44.771 -13.604 37.551 1.00 0.00 C ATOM 115 CG TYR 15 -46.275 -13.526 37.688 1.00 0.00 C ATOM 116 CD1 TYR 15 -46.863 -13.174 38.895 1.00 0.00 C ATOM 117 CD2 TYR 15 -47.102 -13.805 36.607 1.00 0.00 C ATOM 118 CE1 TYR 15 -48.237 -13.100 39.028 1.00 0.00 C ATOM 119 CE2 TYR 15 -48.477 -13.737 36.721 1.00 0.00 C ATOM 120 CZ TYR 15 -49.041 -13.381 37.945 1.00 0.00 C ATOM 121 OH TYR 15 -50.409 -13.308 38.074 1.00 0.00 H ATOM 122 N THR 16 -41.835 -15.018 38.151 1.00 0.00 N ATOM 123 CA THR 16 -40.400 -14.763 38.010 1.00 0.00 C ATOM 124 C THR 16 -39.964 -13.487 37.271 1.00 0.00 C ATOM 125 O THR 16 -39.875 -13.430 36.046 1.00 0.00 O ATOM 126 CB THR 16 -39.699 -15.895 37.237 1.00 0.00 C ATOM 127 OG1 THR 16 -39.905 -17.140 37.916 1.00 0.00 O ATOM 128 CG2 THR 16 -38.205 -15.628 37.141 1.00 0.00 C ATOM 129 N VAL 17 -39.692 -12.453 38.082 1.00 0.00 N ATOM 130 CA VAL 17 -39.407 -11.071 37.670 1.00 0.00 C ATOM 131 C VAL 17 -38.604 -10.861 36.378 1.00 0.00 C ATOM 132 O VAL 17 -39.104 -10.269 35.420 1.00 0.00 O ATOM 133 CB VAL 17 -38.592 -10.321 38.740 1.00 0.00 C ATOM 134 CG1 VAL 17 -38.126 -8.974 38.207 1.00 0.00 C ATOM 135 CG2 VAL 17 -39.437 -10.079 39.981 1.00 0.00 C ATOM 136 N THR 18 -37.354 -11.331 36.316 1.00 0.00 N ATOM 137 CA THR 18 -36.510 -11.190 35.135 1.00 0.00 C ATOM 138 C THR 18 -36.982 -12.003 33.933 1.00 0.00 C ATOM 139 O THR 18 -36.798 -11.630 32.772 1.00 0.00 O ATOM 140 CB THR 18 -35.066 -11.647 35.415 1.00 0.00 C ATOM 141 OG1 THR 18 -35.067 -13.023 35.812 1.00 0.00 O ATOM 142 CG2 THR 18 -34.451 -10.813 36.529 1.00 0.00 C ATOM 143 N ASP 19 -37.607 -13.140 34.240 1.00 0.00 N ATOM 144 CA ASP 19 -37.966 -14.114 33.226 1.00 0.00 C ATOM 145 C ASP 19 -39.225 -13.665 32.511 1.00 0.00 C ATOM 146 O ASP 19 -39.274 -13.798 31.284 1.00 0.00 O ATOM 147 CB ASP 19 -38.220 -15.481 33.862 1.00 0.00 C ATOM 148 CG ASP 19 -36.945 -16.147 34.341 1.00 0.00 C ATOM 149 OD1 ASP 19 -35.852 -15.691 33.944 1.00 0.00 O ATOM 150 OD2 ASP 19 -37.039 -17.126 35.112 1.00 0.00 O ATOM 151 N ILE 20 -40.239 -13.141 33.216 1.00 0.00 N ATOM 152 CA ILE 20 -41.397 -12.522 32.574 1.00 0.00 C ATOM 153 C ILE 20 -40.985 -11.311 31.728 1.00 0.00 C ATOM 154 O ILE 20 -41.505 -11.133 30.632 1.00 0.00 O ATOM 155 CB ILE 20 -42.423 -12.031 33.613 1.00 0.00 C ATOM 156 CG1 ILE 20 -43.000 -13.214 34.392 1.00 0.00 C ATOM 157 CG2 ILE 20 -43.568 -11.301 32.927 1.00 0.00 C ATOM 158 CD1 ILE 20 -43.739 -14.213 33.528 1.00 0.00 C ATOM 159 N LYS 21 -40.054 -10.473 32.220 1.00 0.00 N ATOM 160 CA LYS 21 -39.513 -9.355 31.450 1.00 0.00 C ATOM 161 C LYS 21 -38.958 -9.830 30.104 1.00 0.00 C ATOM 162 O LYS 21 -39.416 -9.364 29.058 1.00 0.00 O ATOM 163 CB LYS 21 -38.379 -8.675 32.219 1.00 0.00 C ATOM 164 CG LYS 21 -37.789 -7.464 31.513 1.00 0.00 C ATOM 165 CD LYS 21 -36.704 -6.810 32.353 1.00 0.00 C ATOM 166 CE LYS 21 -36.090 -5.620 31.633 1.00 0.00 C ATOM 167 NZ LYS 21 -35.042 -4.954 32.454 1.00 0.00 N ATOM 168 N ASP 22 -37.982 -10.749 30.108 1.00 0.00 N ATOM 169 CA ASP 22 -37.381 -11.243 28.870 1.00 0.00 C ATOM 170 C ASP 22 -38.307 -12.090 27.996 1.00 0.00 C ATOM 171 O ASP 22 -38.194 -12.064 26.770 1.00 0.00 O ATOM 172 CB ASP 22 -36.168 -12.122 29.177 1.00 0.00 C ATOM 173 CG ASP 22 -34.970 -11.320 29.647 1.00 0.00 C ATOM 174 OD1 ASP 22 -34.994 -10.079 29.504 1.00 0.00 O ATOM 175 OD2 ASP 22 -34.008 -11.931 30.158 1.00 0.00 O ATOM 176 N LEU 23 -39.228 -12.846 28.600 1.00 0.00 N ATOM 177 CA LEU 23 -40.228 -13.621 27.874 1.00 0.00 C ATOM 178 C LEU 23 -41.229 -12.744 27.119 1.00 0.00 C ATOM 179 O LEU 23 -41.632 -13.082 26.008 1.00 0.00 O ATOM 180 CB LEU 23 -41.032 -14.495 28.838 1.00 0.00 C ATOM 181 CG LEU 23 -42.104 -15.389 28.210 1.00 0.00 C ATOM 182 CD1 LEU 23 -41.479 -16.367 27.227 1.00 0.00 C ATOM 183 CD2 LEU 23 -42.831 -16.189 29.280 1.00 0.00 C ATOM 184 N THR 24 -41.649 -11.609 27.703 1.00 0.00 N ATOM 185 CA THR 24 -42.570 -10.702 27.023 1.00 0.00 C ATOM 186 C THR 24 -42.017 -10.059 25.754 1.00 0.00 C ATOM 187 O THR 24 -42.777 -9.755 24.833 1.00 0.00 O ATOM 188 CB THR 24 -42.981 -9.530 27.933 1.00 0.00 C ATOM 189 OG1 THR 24 -41.816 -8.797 28.329 1.00 0.00 O ATOM 190 CG2 THR 24 -43.687 -10.045 29.179 1.00 0.00 C ATOM 191 N LYS 25 -40.700 -9.839 25.675 1.00 0.00 N ATOM 192 CA LYS 25 -40.046 -9.436 24.428 1.00 0.00 C ATOM 193 C LYS 25 -40.280 -10.398 23.259 1.00 0.00 C ATOM 194 O LYS 25 -40.249 -9.996 22.104 1.00 0.00 O ATOM 195 CB LYS 25 -38.532 -9.346 24.621 1.00 0.00 C ATOM 196 CG LYS 25 -38.085 -8.184 25.493 1.00 0.00 C ATOM 197 CD LYS 25 -36.573 -8.160 25.649 1.00 0.00 C ATOM 198 CE LYS 25 -36.127 -7.000 26.524 1.00 0.00 C ATOM 199 NZ LYS 25 -34.649 -6.981 26.711 1.00 0.00 N ATOM 200 N LEU 26 -40.517 -11.684 23.560 1.00 0.00 N ATOM 201 CA LEU 26 -40.957 -12.652 22.564 1.00 0.00 C ATOM 202 C LEU 26 -42.482 -12.712 22.453 1.00 0.00 C ATOM 203 O LEU 26 -43.028 -12.943 21.374 1.00 0.00 O ATOM 204 CB LEU 26 -40.465 -14.055 22.927 1.00 0.00 C ATOM 205 CG LEU 26 -38.948 -14.252 22.968 1.00 0.00 C ATOM 206 CD1 LEU 26 -38.601 -15.658 23.432 1.00 0.00 C ATOM 207 CD2 LEU 26 -38.343 -14.043 21.589 1.00 0.00 C ATOM 208 N GLY 27 -43.178 -12.503 23.575 1.00 0.00 N ATOM 209 CA GLY 27 -44.631 -12.418 23.612 1.00 0.00 C ATOM 210 C GLY 27 -45.272 -13.721 24.065 1.00 0.00 C ATOM 211 O GLY 27 -45.748 -14.509 23.243 1.00 0.00 O ATOM 212 N ALA 28 -45.290 -13.965 25.381 1.00 0.00 N ATOM 213 CA ALA 28 -45.788 -15.226 25.910 1.00 0.00 C ATOM 214 C ALA 28 -46.464 -15.160 27.279 1.00 0.00 C ATOM 215 O ALA 28 -46.323 -14.200 28.036 1.00 0.00 O ATOM 216 CB ALA 28 -44.648 -16.222 26.066 1.00 0.00 C ATOM 217 N ILE 29 -47.200 -16.254 27.527 1.00 0.00 N ATOM 218 CA ILE 29 -48.010 -16.563 28.713 1.00 0.00 C ATOM 219 C ILE 29 -48.574 -17.976 28.440 1.00 0.00 C ATOM 220 O ILE 29 -48.183 -18.534 27.415 1.00 0.00 O ATOM 221 CB ILE 29 -49.148 -15.542 28.901 1.00 0.00 C ATOM 222 CG1 ILE 29 -49.783 -15.702 30.283 1.00 0.00 C ATOM 223 CG2 ILE 29 -50.226 -15.747 27.848 1.00 0.00 C ATOM 224 CD1 ILE 29 -48.862 -15.335 31.425 1.00 0.00 C ATOM 225 N TYR 30 -49.452 -18.538 29.309 1.00 0.00 N ATOM 226 CA TYR 30 -50.431 -19.628 29.076 1.00 0.00 C ATOM 227 C TYR 30 -50.253 -20.711 30.153 1.00 0.00 C ATOM 228 O TYR 30 -49.112 -21.144 30.335 1.00 0.00 O ATOM 229 CB TYR 30 -50.216 -20.256 27.697 1.00 0.00 C ATOM 230 CG TYR 30 -51.162 -21.394 27.387 1.00 0.00 C ATOM 231 CD1 TYR 30 -52.480 -21.144 27.029 1.00 0.00 C ATOM 232 CD2 TYR 30 -50.733 -22.713 27.455 1.00 0.00 C ATOM 233 CE1 TYR 30 -53.352 -22.177 26.744 1.00 0.00 C ATOM 234 CE2 TYR 30 -51.591 -23.759 27.173 1.00 0.00 C ATOM 235 CZ TYR 30 -52.910 -23.481 26.815 1.00 0.00 C ATOM 236 OH TYR 30 -53.776 -24.512 26.533 1.00 0.00 H ATOM 237 N ASP 31 -51.148 -21.302 30.971 1.00 0.00 N ATOM 238 CA ASP 31 -52.572 -21.023 31.201 1.00 0.00 C ATOM 239 C ASP 31 -53.058 -22.059 32.223 1.00 0.00 C ATOM 240 O ASP 31 -53.647 -23.070 31.843 1.00 0.00 O ATOM 241 CB ASP 31 -53.360 -21.149 29.895 1.00 0.00 C ATOM 242 CG ASP 31 -54.802 -20.701 30.039 1.00 0.00 C ATOM 243 OD1 ASP 31 -55.216 -20.389 31.176 1.00 0.00 O ATOM 244 OD2 ASP 31 -55.517 -20.663 29.016 1.00 0.00 O ATOM 245 N LYS 32 -52.834 -21.850 33.530 1.00 0.00 N ATOM 246 CA LYS 32 -53.359 -22.685 34.623 1.00 0.00 C ATOM 247 C LYS 32 -52.941 -24.158 34.735 1.00 0.00 C ATOM 248 O LYS 32 -53.103 -24.769 35.789 1.00 0.00 O ATOM 249 CB LYS 32 -54.886 -22.758 34.556 1.00 0.00 C ATOM 250 CG LYS 32 -55.582 -21.428 34.796 1.00 0.00 C ATOM 251 CD LYS 32 -57.092 -21.573 34.715 1.00 0.00 C ATOM 252 CE LYS 32 -57.788 -20.240 34.936 1.00 0.00 C ATOM 253 NZ LYS 32 -59.269 -20.363 34.840 1.00 0.00 N ATOM 254 N THR 33 -52.403 -24.756 33.670 1.00 0.00 N ATOM 255 CA THR 33 -51.900 -26.121 33.659 1.00 0.00 C ATOM 256 C THR 33 -50.366 -26.067 33.582 1.00 0.00 C ATOM 257 O THR 33 -49.767 -25.157 34.158 1.00 0.00 O ATOM 258 CB THR 33 -52.438 -26.911 32.451 1.00 0.00 C ATOM 259 OG1 THR 33 -52.026 -26.272 31.237 1.00 0.00 O ATOM 260 CG2 THR 33 -53.957 -26.969 32.487 1.00 0.00 C ATOM 261 N LYS 34 -49.682 -26.996 32.898 1.00 0.00 N ATOM 262 CA LYS 34 -48.251 -26.880 32.634 1.00 0.00 C ATOM 263 C LYS 34 -48.033 -25.696 31.690 1.00 0.00 C ATOM 264 O LYS 34 -48.839 -25.458 30.786 1.00 0.00 O ATOM 265 CB LYS 34 -47.721 -28.160 31.984 1.00 0.00 C ATOM 266 CG LYS 34 -47.722 -29.369 32.904 1.00 0.00 C ATOM 267 CD LYS 34 -47.143 -30.592 32.210 1.00 0.00 C ATOM 268 CE LYS 34 -47.190 -31.814 33.112 1.00 0.00 C ATOM 269 NZ LYS 34 -46.609 -33.015 32.452 1.00 0.00 N ATOM 270 N LYS 35 -46.945 -24.945 31.887 1.00 0.00 N ATOM 271 CA LYS 35 -46.663 -23.759 31.090 1.00 0.00 C ATOM 272 C LYS 35 -46.448 -24.096 29.615 1.00 0.00 C ATOM 273 O LYS 35 -45.472 -24.752 29.241 1.00 0.00 O ATOM 274 CB LYS 35 -45.399 -23.062 31.596 1.00 0.00 C ATOM 275 CG LYS 35 -45.078 -21.760 30.879 1.00 0.00 C ATOM 276 CD LYS 35 -43.898 -21.051 31.523 1.00 0.00 C ATOM 277 CE LYS 35 -43.502 -19.813 30.736 1.00 0.00 C ATOM 278 NZ LYS 35 -42.414 -19.051 31.411 1.00 0.00 N ATOM 279 N TYR 36 -47.372 -23.640 28.769 1.00 0.00 N ATOM 280 CA TYR 36 -47.252 -23.811 27.325 1.00 0.00 C ATOM 281 C TYR 36 -47.308 -22.424 26.693 1.00 0.00 C ATOM 282 O TYR 36 -47.437 -21.437 27.421 1.00 0.00 O ATOM 283 CB TYR 36 -48.395 -24.676 26.791 1.00 0.00 C ATOM 284 CG TYR 36 -48.331 -26.120 27.237 1.00 0.00 C ATOM 285 CD1 TYR 36 -47.148 -26.663 27.722 1.00 0.00 C ATOM 286 CD2 TYR 36 -49.455 -26.934 27.172 1.00 0.00 C ATOM 287 CE1 TYR 36 -47.081 -27.981 28.132 1.00 0.00 C ATOM 288 CE2 TYR 36 -49.406 -28.254 27.577 1.00 0.00 C ATOM 289 CZ TYR 36 -48.205 -28.774 28.060 1.00 0.00 C ATOM 290 OH TYR 36 -48.140 -30.087 28.467 1.00 0.00 H ATOM 291 N TRP 37 -47.219 -22.293 25.362 1.00 0.00 N ATOM 292 CA TRP 37 -47.004 -21.007 24.702 1.00 0.00 C ATOM 293 C TRP 37 -47.077 -21.127 23.179 1.00 0.00 C ATOM 294 O TRP 37 -47.260 -22.224 22.657 1.00 0.00 O ATOM 295 CB TRP 37 -45.626 -20.446 25.058 1.00 0.00 C ATOM 296 CG TRP 37 -44.492 -21.334 24.647 1.00 0.00 C ATOM 297 CD1 TRP 37 -43.852 -21.340 23.441 1.00 0.00 C ATOM 298 CD2 TRP 37 -43.862 -22.346 25.441 1.00 0.00 C ATOM 299 NE1 TRP 37 -42.863 -22.294 23.434 1.00 0.00 N ATOM 300 CE2 TRP 37 -42.850 -22.925 24.651 1.00 0.00 C ATOM 301 CE3 TRP 37 -44.056 -22.820 26.742 1.00 0.00 C ATOM 302 CZ2 TRP 37 -42.033 -23.954 25.121 1.00 0.00 C ATOM 303 CZ3 TRP 37 -43.245 -23.839 27.203 1.00 0.00 C ATOM 304 CH2 TRP 37 -42.246 -24.396 26.398 1.00 0.00 H ATOM 305 N VAL 38 -46.928 -19.974 22.499 1.00 0.00 N ATOM 306 CA VAL 38 -46.686 -19.825 21.061 1.00 0.00 C ATOM 307 C VAL 38 -47.957 -19.735 20.217 1.00 0.00 C ATOM 308 O VAL 38 -48.701 -20.688 19.994 1.00 0.00 O ATOM 309 CB VAL 38 -45.888 -21.015 20.496 1.00 0.00 C ATOM 310 CG1 VAL 38 -45.692 -20.862 18.996 1.00 0.00 C ATOM 311 CG2 VAL 38 -44.519 -21.099 21.154 1.00 0.00 C ATOM 312 N TYR 39 -48.173 -18.506 19.747 1.00 0.00 N ATOM 313 CA TYR 39 -49.270 -18.187 18.848 1.00 0.00 C ATOM 314 C TYR 39 -48.672 -17.543 17.609 1.00 0.00 C ATOM 315 O TYR 39 -47.881 -16.608 17.713 1.00 0.00 O ATOM 316 CB TYR 39 -50.248 -17.221 19.518 1.00 0.00 C ATOM 317 CG TYR 39 -50.969 -17.807 20.710 1.00 0.00 C ATOM 318 CD1 TYR 39 -50.447 -17.678 21.992 1.00 0.00 C ATOM 319 CD2 TYR 39 -52.169 -18.489 20.551 1.00 0.00 C ATOM 320 CE1 TYR 39 -51.100 -18.212 23.087 1.00 0.00 C ATOM 321 CE2 TYR 39 -52.835 -19.029 21.635 1.00 0.00 C ATOM 322 CZ TYR 39 -52.290 -18.884 22.909 1.00 0.00 C ATOM 323 OH TYR 39 -52.941 -19.416 23.999 1.00 0.00 H ATOM 324 N GLN 40 -49.051 -18.041 16.430 1.00 0.00 N ATOM 325 CA GLN 40 -48.591 -17.507 15.159 1.00 0.00 C ATOM 326 C GLN 40 -49.761 -17.690 14.192 1.00 0.00 C ATOM 327 O GLN 40 -50.142 -18.830 13.925 1.00 0.00 O ATOM 328 CB GLN 40 -47.356 -18.268 14.672 1.00 0.00 C ATOM 329 CG GLN 40 -46.757 -17.723 13.386 1.00 0.00 C ATOM 330 CD GLN 40 -45.411 -18.340 13.064 1.00 0.00 C ATOM 331 OE1 GLN 40 -44.921 -19.201 13.793 1.00 0.00 O ATOM 332 NE2 GLN 40 -44.807 -17.899 11.966 1.00 0.00 N ATOM 333 N GLY 41 -50.419 -16.687 13.598 1.00 0.00 N ATOM 334 CA GLY 41 -50.104 -15.275 13.779 1.00 0.00 C ATOM 335 C GLY 41 -50.636 -14.670 15.076 1.00 0.00 C ATOM 336 O GLY 41 -51.193 -15.364 15.927 1.00 0.00 O ATOM 337 N LYS 42 -50.462 -13.354 15.228 1.00 0.00 N ATOM 338 CA LYS 42 -50.667 -12.691 16.509 1.00 0.00 C ATOM 339 C LYS 42 -51.731 -11.601 16.410 1.00 0.00 C ATOM 340 O LYS 42 -51.602 -10.702 15.578 1.00 0.00 O ATOM 341 CB LYS 42 -49.369 -12.039 16.989 1.00 0.00 C ATOM 342 CG LYS 42 -48.250 -13.026 17.280 1.00 0.00 C ATOM 343 CD LYS 42 -47.014 -12.319 17.811 1.00 0.00 C ATOM 344 CE LYS 42 -45.890 -13.304 18.088 1.00 0.00 C ATOM 345 NZ LYS 42 -44.704 -12.638 18.693 1.00 0.00 N ATOM 346 N PRO 43 -52.795 -11.625 17.224 1.00 0.00 N ATOM 347 CA PRO 43 -53.798 -10.563 17.281 1.00 0.00 C ATOM 348 C PRO 43 -53.327 -9.267 17.942 1.00 0.00 C ATOM 349 O PRO 43 -53.046 -9.209 19.140 1.00 0.00 O ATOM 350 CB PRO 43 -54.939 -11.174 18.097 1.00 0.00 C ATOM 351 CG PRO 43 -54.277 -12.197 18.957 1.00 0.00 C ATOM 352 CD PRO 43 -53.144 -12.757 18.144 1.00 0.00 C ATOM 353 N VAL 44 -53.233 -8.192 17.155 1.00 0.00 N ATOM 354 CA VAL 44 -52.875 -6.883 17.680 1.00 0.00 C ATOM 355 C VAL 44 -54.077 -5.970 17.465 1.00 0.00 C ATOM 356 O VAL 44 -54.517 -5.760 16.332 1.00 0.00 O ATOM 357 CB VAL 44 -51.646 -6.301 16.958 1.00 0.00 C ATOM 358 CG1 VAL 44 -51.315 -4.919 17.498 1.00 0.00 C ATOM 359 CG2 VAL 44 -50.435 -7.200 17.159 1.00 0.00 C ATOM 360 N MET 45 -54.612 -5.422 18.559 1.00 0.00 N ATOM 361 CA MET 45 -55.676 -4.428 18.478 1.00 0.00 C ATOM 362 C MET 45 -55.165 -3.089 17.949 1.00 0.00 C ATOM 363 O MET 45 -54.056 -2.683 18.305 1.00 0.00 O ATOM 364 CB MET 45 -56.286 -4.182 19.859 1.00 0.00 C ATOM 365 CG MET 45 -57.010 -5.384 20.442 1.00 0.00 C ATOM 366 SD MET 45 -58.362 -5.955 19.396 1.00 0.00 S ATOM 367 CE MET 45 -59.512 -4.591 19.553 1.00 0.00 C ATOM 368 N PRO 46 -55.921 -2.365 17.107 1.00 0.00 N ATOM 369 CA PRO 46 -55.562 -1.040 16.607 1.00 0.00 C ATOM 370 C PRO 46 -55.396 0.001 17.709 1.00 0.00 C ATOM 371 O PRO 46 -56.142 0.024 18.693 1.00 0.00 O ATOM 372 CB PRO 46 -56.726 -0.663 15.689 1.00 0.00 C ATOM 373 CG PRO 46 -57.302 -1.971 15.259 1.00 0.00 C ATOM 374 CD PRO 46 -57.199 -2.883 16.449 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 73.11 58.8 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 44.38 79.4 34 100.0 34 ARMSMC SURFACE . . . . . . . . 72.84 60.7 56 100.0 56 ARMSMC BURIED . . . . . . . . 74.32 50.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.91 46.9 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 81.77 41.4 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 76.53 52.9 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 78.45 44.4 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 74.97 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.09 52.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 59.95 57.1 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 69.24 61.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 68.01 54.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 76.51 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 41.51 87.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 43.90 85.7 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 81.74 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 41.51 87.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 51.73 83.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 51.73 83.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 89.28 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 51.73 83.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.82 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.82 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2520 CRMSCA SECONDARY STRUCTURE . . 5.00 17 100.0 17 CRMSCA SURFACE . . . . . . . . 8.97 29 100.0 29 CRMSCA BURIED . . . . . . . . 8.08 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.99 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 5.13 85 100.0 85 CRMSMC SURFACE . . . . . . . . 9.07 143 100.0 143 CRMSMC BURIED . . . . . . . . 8.59 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.27 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 10.42 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 7.19 84 100.0 84 CRMSSC SURFACE . . . . . . . . 10.32 127 100.0 127 CRMSSC BURIED . . . . . . . . 10.08 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.63 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 6.34 152 100.0 152 CRMSALL SURFACE . . . . . . . . 9.66 243 100.0 243 CRMSALL BURIED . . . . . . . . 9.48 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.083 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 4.768 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 7.080 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 7.099 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.178 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 4.878 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 7.143 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 7.347 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.773 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 8.809 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 6.554 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 8.613 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 9.472 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.970 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 5.794 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 7.851 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 8.515 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 4 16 29 35 35 DISTCA CA (P) 0.00 0.00 11.43 45.71 82.86 35 DISTCA CA (RMS) 0.00 0.00 2.69 3.83 5.26 DISTCA ALL (N) 0 4 24 99 221 296 296 DISTALL ALL (P) 0.00 1.35 8.11 33.45 74.66 296 DISTALL ALL (RMS) 0.00 1.73 2.38 3.75 5.78 DISTALL END of the results output