####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS114_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS114_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 12 - 30 4.75 16.19 LCS_AVERAGE: 48.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 12 - 24 1.84 16.98 LCS_AVERAGE: 26.53 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 16 - 24 0.99 16.79 LCS_AVERAGE: 16.08 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 13 19 3 3 8 10 12 12 13 13 14 14 15 15 17 18 18 18 19 19 19 19 LCS_GDT F 13 F 13 4 13 19 3 4 5 7 12 12 13 13 14 14 15 16 17 18 18 18 19 19 19 19 LCS_GDT H 14 H 14 4 13 19 3 4 5 10 12 12 13 13 14 14 15 16 17 19 21 22 22 23 25 26 LCS_GDT Y 15 Y 15 4 13 19 3 4 5 5 8 10 13 13 14 14 15 20 21 21 22 22 22 23 25 26 LCS_GDT T 16 T 16 9 13 19 3 6 8 10 12 12 13 14 14 16 17 20 21 21 22 22 23 26 26 26 LCS_GDT V 17 V 17 9 13 19 3 8 8 10 12 12 13 14 14 16 17 20 21 21 22 22 23 26 26 26 LCS_GDT T 18 T 18 9 13 19 3 8 8 10 12 12 13 13 14 14 15 20 21 21 22 22 25 26 26 26 LCS_GDT D 19 D 19 9 13 19 3 8 8 10 12 12 13 13 14 16 17 20 21 21 22 23 25 26 26 26 LCS_GDT I 20 I 20 9 13 19 3 8 8 10 12 12 13 13 14 16 17 20 21 21 22 23 25 26 26 26 LCS_GDT K 21 K 21 9 13 19 4 8 8 10 12 12 13 13 14 16 17 20 21 21 22 23 25 26 26 26 LCS_GDT D 22 D 22 9 13 19 4 8 8 10 12 12 13 13 14 14 17 20 21 21 22 23 25 25 25 26 LCS_GDT L 23 L 23 9 13 19 4 8 8 10 12 12 13 13 14 14 16 20 21 21 22 23 25 26 26 26 LCS_GDT T 24 T 24 9 13 19 4 8 8 10 12 12 13 13 14 16 17 20 21 21 22 23 25 26 26 26 LCS_GDT K 25 K 25 3 10 19 3 3 4 4 5 9 11 13 14 16 17 20 21 21 22 23 25 26 26 26 LCS_GDT L 26 L 26 3 5 19 3 3 4 4 5 7 9 10 11 14 15 17 20 21 22 23 25 26 26 26 LCS_GDT G 27 G 27 3 5 19 0 3 4 4 4 7 8 10 12 13 15 19 20 21 22 23 25 26 26 26 LCS_GDT A 28 A 28 3 5 19 1 3 4 4 4 7 10 12 14 14 17 19 20 21 22 23 25 26 26 26 LCS_GDT I 29 I 29 6 8 19 4 4 7 10 11 11 12 13 14 15 17 19 20 21 22 23 25 26 26 26 LCS_GDT Y 30 Y 30 6 8 19 4 5 7 10 11 11 13 14 14 15 17 19 20 21 22 23 25 26 26 26 LCS_GDT D 31 D 31 6 8 18 4 4 7 10 11 11 12 14 14 15 17 19 20 21 22 23 25 26 26 26 LCS_GDT K 32 K 32 6 8 15 4 5 7 10 11 11 13 14 14 15 17 19 20 21 22 23 25 26 26 26 LCS_GDT T 33 T 33 6 8 15 3 5 7 10 11 11 13 14 14 15 17 19 20 21 22 23 25 26 26 26 LCS_GDT K 34 K 34 6 8 15 3 5 7 10 11 11 13 14 14 15 17 19 20 21 22 23 25 26 26 26 LCS_GDT K 35 K 35 4 8 15 3 4 6 10 11 11 13 14 14 15 17 19 20 21 22 23 25 26 26 26 LCS_GDT Y 36 Y 36 4 8 15 3 4 5 7 11 11 13 14 14 15 17 19 20 21 22 23 25 26 26 26 LCS_GDT W 37 W 37 4 6 14 3 3 4 5 5 7 9 10 12 14 15 17 21 21 22 23 25 26 26 26 LCS_GDT V 38 V 38 4 6 14 3 3 4 4 7 9 11 12 14 16 17 20 21 21 22 22 23 24 25 26 LCS_GDT Y 39 Y 39 4 6 14 3 3 4 5 5 7 9 10 14 16 17 20 21 21 22 22 22 23 25 25 LCS_GDT Q 40 Q 40 4 7 14 3 3 4 5 7 7 9 10 11 16 17 20 21 21 22 22 22 23 25 25 LCS_GDT G 41 G 41 4 7 14 3 4 5 6 8 9 11 12 14 16 17 20 21 21 22 22 23 24 25 26 LCS_GDT K 42 K 42 5 7 14 3 6 6 7 8 9 13 14 14 16 17 20 21 21 22 22 25 26 26 26 LCS_GDT P 43 P 43 5 7 14 3 6 6 7 8 9 13 14 14 16 17 20 21 21 22 23 25 26 26 26 LCS_GDT V 44 V 44 5 7 12 3 6 7 10 11 11 13 14 14 16 17 20 21 21 22 23 25 26 26 26 LCS_GDT M 45 M 45 5 7 12 3 6 6 7 9 11 13 14 14 16 17 20 21 21 22 23 25 26 26 26 LCS_GDT P 46 P 46 5 7 12 3 6 6 7 9 10 13 14 14 16 17 20 21 21 22 23 25 26 26 26 LCS_AVERAGE LCS_A: 30.20 ( 16.08 26.53 48.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 8 8 10 12 12 13 14 14 16 17 20 21 21 22 23 25 26 26 26 GDT PERCENT_AT 11.43 22.86 22.86 28.57 34.29 34.29 37.14 40.00 40.00 45.71 48.57 57.14 60.00 60.00 62.86 65.71 71.43 74.29 74.29 74.29 GDT RMS_LOCAL 0.29 0.71 0.71 1.17 1.56 1.56 1.84 2.88 2.29 3.44 3.61 3.99 4.18 4.18 4.42 5.45 5.87 6.25 6.25 6.16 GDT RMS_ALL_AT 14.03 16.77 16.77 16.79 16.96 16.96 16.98 11.09 17.28 12.10 12.34 12.39 12.19 12.19 11.97 11.56 11.29 10.77 10.77 11.09 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: D 19 D 19 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 22.706 0 0.056 1.148 24.199 0.000 0.000 LGA F 13 F 13 17.709 0 0.099 1.049 25.790 0.000 0.000 LGA H 14 H 14 10.378 0 0.048 1.230 12.909 0.714 8.524 LGA Y 15 Y 15 8.535 0 0.571 1.427 16.143 8.690 2.897 LGA T 16 T 16 2.427 0 0.135 0.194 3.969 57.738 56.531 LGA V 17 V 17 3.383 0 0.088 1.267 6.668 38.571 33.741 LGA T 18 T 18 8.092 0 0.062 1.035 10.319 6.667 4.830 LGA D 19 D 19 8.367 0 0.081 1.381 11.522 4.048 4.226 LGA I 20 I 20 8.989 0 0.023 0.080 12.539 1.905 10.893 LGA K 21 K 21 13.029 0 0.036 1.181 16.753 0.000 0.000 LGA D 22 D 22 17.051 0 0.052 0.090 19.715 0.000 0.000 LGA L 23 L 23 16.947 0 0.115 0.312 19.574 0.000 0.000 LGA T 24 T 24 17.195 0 0.283 1.032 19.462 0.000 0.000 LGA K 25 K 25 19.303 0 0.693 1.052 23.224 0.000 0.000 LGA L 26 L 26 17.999 0 0.666 1.471 22.754 0.000 0.000 LGA G 27 G 27 13.492 0 0.612 0.612 14.545 0.000 0.000 LGA A 28 A 28 10.454 0 0.580 0.579 11.079 5.119 4.095 LGA I 29 I 29 5.012 0 0.588 1.467 10.863 29.167 19.762 LGA Y 30 Y 30 1.629 0 0.047 1.308 8.360 61.190 47.817 LGA D 31 D 31 3.330 0 0.270 1.078 6.895 59.167 39.524 LGA K 32 K 32 1.351 0 0.535 0.823 9.169 64.048 48.624 LGA T 33 T 33 1.604 0 0.246 0.691 3.551 65.595 65.306 LGA K 34 K 34 1.835 0 0.665 0.858 7.592 68.929 47.725 LGA K 35 K 35 3.442 0 0.677 0.982 6.860 44.167 33.439 LGA Y 36 Y 36 3.596 0 0.140 1.388 7.572 29.405 35.873 LGA W 37 W 37 10.174 0 0.094 1.175 20.032 2.976 0.850 LGA V 38 V 38 13.120 0 0.176 0.262 17.204 0.000 0.000 LGA Y 39 Y 39 16.182 0 0.179 1.412 19.692 0.000 0.000 LGA Q 40 Q 40 16.184 0 0.445 1.204 20.376 0.000 0.000 LGA G 41 G 41 10.448 0 0.720 0.720 12.497 3.571 3.571 LGA K 42 K 42 3.760 0 0.075 0.640 6.262 33.810 37.778 LGA P 43 P 43 3.632 0 0.052 0.157 5.800 61.905 47.483 LGA V 44 V 44 0.635 0 0.086 0.137 3.392 77.381 71.020 LGA M 45 M 45 3.547 0 0.161 0.981 6.311 52.024 38.036 LGA P 46 P 46 3.510 0 0.077 0.083 5.718 34.881 34.218 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 9.257 9.195 10.626 23.190 19.908 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 14 2.88 39.286 36.457 0.470 LGA_LOCAL RMSD: 2.882 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.093 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 9.257 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.462409 * X + 0.845789 * Y + -0.266118 * Z + -34.492447 Y_new = 0.873112 * X + -0.382069 * Y + 0.302818 * Z + -26.486784 Z_new = 0.154445 * X + -0.372376 * Y + -0.915141 * Z + 32.292351 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.083742 -0.155066 -2.755147 [DEG: 62.0938 -8.8846 -157.8583 ] ZXZ: -2.420612 2.726653 2.748431 [DEG: -138.6909 156.2257 157.4735 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS114_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS114_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 14 2.88 36.457 9.26 REMARK ---------------------------------------------------------- MOLECULE T0548TS114_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3l2rA 3l2rA ATOM 87 N HIS 12 -29.777 -12.475 46.024 1.00 48.94 N ATOM 88 CA HIS 12 -29.913 -12.837 44.645 1.00 43.18 C ATOM 89 C HIS 12 -31.371 -12.987 44.351 1.00 37.94 C ATOM 90 O HIS 12 -32.156 -13.359 45.220 1.00 39.11 O ATOM 91 CB HIS 12 -29.198 -14.153 44.297 1.00 42.61 C ATOM 92 CG HIS 12 -27.715 -14.063 44.520 1.00 50.97 C ATOM 93 ND1 HIS 12 -26.838 -13.474 43.636 1.00 61.25 N ATOM 94 CD2 HIS 12 -26.955 -14.494 45.563 1.00 59.28 C ATOM 95 CE1 HIS 12 -25.600 -13.577 44.184 1.00 66.90 C ATOM 96 NE2 HIS 12 -25.621 -14.189 45.355 1.00 65.02 N ATOM 97 N PHE 13 -31.768 -12.672 43.102 1.00 34.96 N ATOM 98 CA PHE 13 -33.144 -12.769 42.710 1.00 32.37 C ATOM 99 C PHE 13 -33.213 -13.751 41.589 1.00 28.05 C ATOM 100 O PHE 13 -32.209 -14.027 40.933 1.00 28.69 O ATOM 101 CB PHE 13 -33.729 -11.453 42.163 1.00 36.42 C ATOM 102 CG PHE 13 -33.777 -10.450 43.265 1.00 47.15 C ATOM 103 CD1 PHE 13 -34.829 -10.437 44.153 1.00 73.17 C ATOM 104 CD2 PHE 13 -32.775 -9.517 43.404 1.00 91.32 C ATOM 105 CE1 PHE 13 -34.879 -9.511 45.167 1.00 73.58 C ATOM 106 CE2 PHE 13 -32.822 -8.589 44.417 1.00 94.73 C ATOM 107 CZ PHE 13 -33.872 -8.584 45.302 1.00 72.50 C ATOM 108 N HIS 14 -34.407 -14.333 41.358 1.00 26.23 N ATOM 109 CA HIS 14 -34.512 -15.267 40.279 1.00 24.73 C ATOM 110 C HIS 14 -34.451 -14.477 39.016 1.00 24.38 C ATOM 111 O HIS 14 -35.288 -13.612 38.760 1.00 26.80 O ATOM 112 CB HIS 14 -35.813 -16.084 40.308 1.00 30.12 C ATOM 113 CG HIS 14 -35.896 -16.956 41.530 1.00 36.55 C ATOM 114 ND1 HIS 14 -36.363 -16.528 42.751 1.00 67.85 N ATOM 115 CD2 HIS 14 -35.543 -18.260 41.704 1.00 37.38 C ATOM 116 CE1 HIS 14 -36.272 -17.586 43.600 1.00 66.43 C ATOM 117 NE2 HIS 14 -35.779 -18.659 43.007 1.00 40.26 N ATOM 118 N TYR 15 -33.420 -14.761 38.199 1.00 25.22 N ATOM 119 CA TYR 15 -33.205 -14.072 36.964 1.00 27.03 C ATOM 120 C TYR 15 -34.317 -14.432 36.035 1.00 25.65 C ATOM 121 O TYR 15 -34.884 -13.571 35.363 1.00 26.63 O ATOM 122 CB TYR 15 -31.888 -14.488 36.285 1.00 29.55 C ATOM 123 CG TYR 15 -31.638 -13.570 35.137 1.00 32.72 C ATOM 124 CD1 TYR 15 -30.992 -12.373 35.347 1.00 41.39 C ATOM 125 CD2 TYR 15 -32.043 -13.893 33.861 1.00 31.61 C ATOM 126 CE1 TYR 15 -30.750 -11.511 34.305 1.00 47.78 C ATOM 127 CE2 TYR 15 -31.803 -13.033 32.814 1.00 38.58 C ATOM 128 CZ TYR 15 -31.156 -11.841 33.036 1.00 46.17 C ATOM 129 OH TYR 15 -30.909 -10.957 31.964 1.00 54.35 H ATOM 130 N THR 16 -34.679 -15.730 36.000 1.00 23.64 N ATOM 131 CA THR 16 -35.657 -16.175 35.052 1.00 22.30 C ATOM 132 C THR 16 -36.956 -16.455 35.734 1.00 22.04 C ATOM 133 O THR 16 -37.010 -17.067 36.800 1.00 21.85 O ATOM 134 CB THR 16 -35.259 -17.434 34.339 1.00 22.84 C ATOM 135 OG1 THR 16 -35.104 -18.494 35.272 1.00 25.26 O ATOM 136 CG2 THR 16 -33.936 -17.186 33.594 1.00 23.26 C ATOM 137 N VAL 17 -38.037 -15.956 35.103 1.00 22.16 N ATOM 138 CA VAL 17 -39.410 -16.106 35.495 1.00 22.06 C ATOM 139 C VAL 17 -39.853 -17.518 35.245 1.00 21.62 C ATOM 140 O VAL 17 -40.713 -18.042 35.951 1.00 21.60 O ATOM 141 CB VAL 17 -40.330 -15.210 34.718 1.00 22.92 C ATOM 142 CG1 VAL 17 -39.951 -13.747 35.006 1.00 85.94 C ATOM 143 CG2 VAL 17 -40.253 -15.598 33.231 1.00 84.00 C ATOM 144 N THR 18 -39.251 -18.173 34.234 1.00 21.41 N ATOM 145 CA THR 18 -39.668 -19.462 33.753 1.00 21.18 C ATOM 146 C THR 18 -39.653 -20.465 34.860 1.00 21.01 C ATOM 147 O THR 18 -40.512 -21.343 34.912 1.00 21.12 O ATOM 148 CB THR 18 -38.785 -19.982 32.655 1.00 21.17 C ATOM 149 OG1 THR 18 -37.461 -20.166 33.134 1.00 23.82 O ATOM 150 CG2 THR 18 -38.794 -18.968 31.497 1.00 24.37 C ATOM 151 N ASP 19 -38.690 -20.358 35.788 1.00 20.95 N ATOM 152 CA ASP 19 -38.594 -21.318 36.847 1.00 20.93 C ATOM 153 C ASP 19 -39.895 -21.313 37.588 1.00 21.22 C ATOM 154 O ASP 19 -40.360 -22.352 38.052 1.00 21.23 O ATOM 155 CB ASP 19 -37.486 -20.963 37.854 1.00 21.41 C ATOM 156 CG ASP 19 -37.335 -22.115 38.835 1.00 22.22 C ATOM 157 OD1 ASP 19 -38.022 -23.153 38.644 1.00 24.22 O ATOM 158 OD2 ASP 19 -36.533 -21.968 39.795 1.00 27.72 O ATOM 159 N ILE 20 -40.531 -20.133 37.696 1.00 21.72 N ATOM 160 CA ILE 20 -41.751 -19.983 38.438 1.00 22.19 C ATOM 161 C ILE 20 -42.824 -20.851 37.849 1.00 21.96 C ATOM 162 O ILE 20 -43.602 -21.458 38.582 1.00 22.00 O ATOM 163 CB ILE 20 -42.265 -18.574 38.438 1.00 23.51 C ATOM 164 CG1 ILE 20 -41.241 -17.632 39.092 1.00 25.37 C ATOM 165 CG2 ILE 20 -43.635 -18.565 39.139 1.00 23.25 C ATOM 166 CD1 ILE 20 -41.564 -16.151 38.901 1.00 32.82 C ATOM 167 N LYS 21 -42.891 -20.951 36.507 1.00 21.95 N ATOM 168 CA LYS 21 -43.959 -21.672 35.870 1.00 22.06 C ATOM 169 C LYS 21 -43.980 -23.090 36.349 1.00 22.01 C ATOM 170 O LYS 21 -45.051 -23.650 36.578 1.00 22.84 O ATOM 171 CB LYS 21 -43.837 -21.707 34.338 1.00 26.49 C ATOM 172 CG LYS 21 -44.036 -20.343 33.676 1.00 60.76 C ATOM 173 CD LYS 21 -43.664 -20.329 32.191 1.00 44.22 C ATOM 174 CE LYS 21 -42.173 -20.554 31.930 1.00 36.83 C ATOM 175 NZ LYS 21 -41.916 -20.618 30.474 1.00 29.33 N ATOM 176 N ASP 22 -42.802 -23.711 36.529 1.00 21.45 N ATOM 177 CA ASP 22 -42.751 -25.079 36.960 1.00 21.81 C ATOM 178 C ASP 22 -43.410 -25.143 38.300 1.00 22.23 C ATOM 179 O ASP 22 -44.077 -26.119 38.639 1.00 23.11 O ATOM 180 CB ASP 22 -41.312 -25.599 37.124 1.00 21.60 C ATOM 181 CG ASP 22 -40.699 -25.746 35.737 1.00 22.35 C ATOM 182 OD1 ASP 22 -41.472 -25.735 34.741 1.00 22.94 O ATOM 183 OD2 ASP 22 -39.449 -25.877 35.656 1.00 25.85 O ATOM 184 N LEU 23 -43.249 -24.065 39.085 1.00 21.96 N ATOM 185 CA LEU 23 -43.791 -23.940 40.404 1.00 22.67 C ATOM 186 C LEU 23 -45.276 -24.003 40.279 1.00 23.08 C ATOM 187 O LEU 23 -45.972 -24.394 41.214 1.00 23.74 O ATOM 188 CB LEU 23 -43.406 -22.613 41.081 1.00 23.22 C ATOM 189 CG LEU 23 -41.892 -22.497 41.353 1.00 24.66 C ATOM 190 CD1 LEU 23 -41.540 -21.160 42.027 1.00 30.94 C ATOM 191 CD2 LEU 23 -41.373 -23.714 42.138 1.00 28.81 C ATOM 192 N THR 24 -45.787 -23.626 39.091 1.00 22.83 N ATOM 193 CA THR 24 -47.192 -23.588 38.819 1.00 23.37 C ATOM 194 C THR 24 -47.733 -22.362 39.482 1.00 23.50 C ATOM 195 O THR 24 -48.931 -22.231 39.732 1.00 23.89 O ATOM 196 CB THR 24 -47.905 -24.820 39.320 1.00 24.33 C ATOM 197 OG1 THR 24 -47.291 -25.978 38.774 1.00 25.11 O ATOM 198 CG2 THR 24 -49.380 -24.787 38.877 1.00 26.25 C ATOM 199 N LYS 25 -46.836 -21.404 39.776 1.00 23.27 N ATOM 200 CA LYS 25 -47.299 -20.142 40.266 1.00 23.56 C ATOM 201 C LYS 25 -47.796 -19.427 39.053 1.00 23.45 C ATOM 202 O LYS 25 -47.313 -19.660 37.946 1.00 23.03 O ATOM 203 CB LYS 25 -46.206 -19.275 40.912 1.00 24.04 C ATOM 204 CG LYS 25 -45.701 -19.814 42.252 1.00 27.66 C ATOM 205 CD LYS 25 -44.435 -19.112 42.745 1.00 36.57 C ATOM 206 CE LYS 25 -43.995 -19.536 44.147 1.00 81.05 C ATOM 207 NZ LYS 25 -42.770 -18.798 44.529 1.00 91.05 N ATOM 208 N LEU 26 -48.796 -18.546 39.229 1.00 23.94 N ATOM 209 CA LEU 26 -49.382 -17.870 38.107 1.00 24.03 C ATOM 210 C LEU 26 -48.443 -16.826 37.606 1.00 23.69 C ATOM 211 O LEU 26 -47.660 -16.251 38.359 1.00 23.79 O ATOM 212 CB LEU 26 -50.701 -17.161 38.456 1.00 25.06 C ATOM 213 CG LEU 26 -51.828 -18.120 38.879 1.00 26.81 C ATOM 214 CD1 LEU 26 -53.120 -17.356 39.212 1.00 32.19 C ATOM 215 CD2 LEU 26 -52.047 -19.214 37.823 1.00 30.14 C ATOM 216 N GLY 27 -48.502 -16.579 36.283 1.00 23.47 N ATOM 217 CA GLY 27 -47.727 -15.554 35.648 1.00 23.31 C ATOM 218 C GLY 27 -48.682 -14.862 34.732 1.00 23.52 C ATOM 219 O GLY 27 -49.555 -15.496 34.142 1.00 23.53 O ATOM 220 N ALA 28 -48.538 -13.533 34.585 1.00 23.78 N ATOM 221 CA ALA 28 -49.470 -12.804 33.778 1.00 24.06 C ATOM 222 C ALA 28 -49.381 -13.270 32.358 1.00 23.63 C ATOM 223 O ALA 28 -50.399 -13.511 31.711 1.00 23.77 O ATOM 224 CB ALA 28 -49.201 -11.290 33.785 1.00 24.46 C ATOM 225 N ILE 29 -48.150 -13.429 31.842 1.00 23.18 N ATOM 226 CA ILE 29 -47.979 -13.792 30.466 1.00 22.79 C ATOM 227 C ILE 29 -48.496 -15.171 30.212 1.00 22.57 C ATOM 228 O ILE 29 -49.212 -15.396 29.237 1.00 22.54 O ATOM 229 CB ILE 29 -46.544 -13.766 30.028 1.00 22.69 C ATOM 230 CG1 ILE 29 -45.974 -12.344 30.148 1.00 23.80 C ATOM 231 CG2 ILE 29 -46.473 -14.337 28.603 1.00 23.09 C ATOM 232 CD1 ILE 29 -44.456 -12.285 29.996 1.00 73.46 C ATOM 233 N TYR 30 -48.166 -16.132 31.093 1.00 22.51 N ATOM 234 CA TYR 30 -48.539 -17.495 30.844 1.00 22.40 C ATOM 235 C TYR 30 -49.956 -17.702 31.270 1.00 22.95 C ATOM 236 O TYR 30 -50.353 -17.307 32.366 1.00 23.37 O ATOM 237 CB TYR 30 -47.676 -18.507 31.618 1.00 22.63 C ATOM 238 CG TYR 30 -46.266 -18.351 31.158 1.00 23.67 C ATOM 239 CD1 TYR 30 -45.813 -19.006 30.036 1.00 24.01 C ATOM 240 CD2 TYR 30 -45.395 -17.542 31.852 1.00 26.73 C ATOM 241 CE1 TYR 30 -44.513 -18.856 29.617 1.00 26.93 C ATOM 242 CE2 TYR 30 -44.093 -17.389 31.439 1.00 29.47 C ATOM 243 CZ TYR 30 -43.649 -18.048 30.318 1.00 29.39 C ATOM 244 OH TYR 30 -42.314 -17.895 29.889 1.00 33.29 H ATOM 245 N ASP 31 -50.763 -18.326 30.388 1.00 23.16 N ATOM 246 CA ASP 31 -52.135 -18.585 30.703 1.00 23.89 C ATOM 247 C ASP 31 -52.187 -19.792 31.581 1.00 23.76 C ATOM 248 O ASP 31 -51.235 -20.568 31.661 1.00 23.32 O ATOM 249 CB ASP 31 -53.019 -18.880 29.478 1.00 24.88 C ATOM 250 CG ASP 31 -53.140 -17.610 28.648 1.00 26.52 C ATOM 251 OD1 ASP 31 -52.312 -16.684 28.852 1.00 27.09 O ATOM 252 OD2 ASP 31 -54.067 -17.550 27.797 1.00 29.17 O ATOM 253 N LYS 32 -53.326 -19.965 32.276 1.00 24.46 N ATOM 254 CA LYS 32 -53.531 -21.075 33.156 1.00 24.82 C ATOM 255 C LYS 32 -54.163 -22.169 32.352 1.00 25.00 C ATOM 256 O LYS 32 -54.376 -22.020 31.151 1.00 25.33 O ATOM 257 CB LYS 32 -54.447 -20.738 34.351 1.00 26.41 C ATOM 258 CG LYS 32 -54.519 -21.834 35.418 1.00 42.34 C ATOM 259 CD LYS 32 -53.203 -22.069 36.169 1.00 51.41 C ATOM 260 CE LYS 32 -53.289 -23.181 37.217 1.00 75.83 C ATOM 261 NZ LYS 32 -51.955 -23.425 37.805 1.00 86.12 N ATOM 262 N THR 33 -54.420 -23.314 33.016 1.00 25.20 N ATOM 263 CA THR 33 -55.027 -24.498 32.476 1.00 25.68 C ATOM 264 C THR 33 -54.163 -25.040 31.387 1.00 25.32 C ATOM 265 O THR 33 -54.622 -25.782 30.521 1.00 26.17 O ATOM 266 CB THR 33 -56.429 -24.318 31.953 1.00 27.02 C ATOM 267 OG1 THR 33 -56.449 -23.494 30.798 1.00 28.33 O ATOM 268 CG2 THR 33 -57.277 -23.684 33.066 1.00 28.96 C ATOM 269 N LYS 34 -52.868 -24.682 31.420 1.00 24.42 N ATOM 270 CA LYS 34 -51.934 -25.243 30.496 1.00 24.27 C ATOM 271 C LYS 34 -50.852 -25.793 31.359 1.00 23.72 C ATOM 272 O LYS 34 -50.286 -25.075 32.181 1.00 23.68 O ATOM 273 CB LYS 34 -51.284 -24.213 29.553 1.00 24.72 C ATOM 274 CG LYS 34 -52.239 -23.625 28.511 1.00 29.35 C ATOM 275 CD LYS 34 -51.659 -22.411 27.778 1.00 30.98 C ATOM 276 CE LYS 34 -52.567 -21.855 26.678 1.00 40.75 C ATOM 277 NZ LYS 34 -51.927 -20.685 26.036 1.00 54.26 N ATOM 278 N LYS 35 -50.545 -27.094 31.219 1.00 23.81 N ATOM 279 CA LYS 35 -49.527 -27.632 32.066 1.00 23.57 C ATOM 280 C LYS 35 -48.201 -27.276 31.490 1.00 22.83 C ATOM 281 O LYS 35 -48.000 -27.328 30.278 1.00 22.84 O ATOM 282 CB LYS 35 -49.593 -29.161 32.224 1.00 25.06 C ATOM 283 CG LYS 35 -49.451 -29.928 30.910 1.00 78.32 C ATOM 284 CD LYS 35 -49.189 -31.421 31.112 1.00 96.22 C ATOM 285 CE LYS 35 -50.294 -32.131 31.898 1.00 99.54 C ATOM 286 NZ LYS 35 -51.484 -32.328 31.040 1.00 99.93 N ATOM 287 N TYR 36 -47.262 -26.874 32.367 1.00 22.45 N ATOM 288 CA TYR 36 -45.939 -26.564 31.920 1.00 21.97 C ATOM 289 C TYR 36 -45.035 -27.497 32.654 1.00 21.81 C ATOM 290 O TYR 36 -45.030 -27.535 33.883 1.00 22.04 O ATOM 291 CB TYR 36 -45.484 -25.136 32.272 1.00 22.47 C ATOM 292 CG TYR 36 -46.336 -24.175 31.517 1.00 24.36 C ATOM 293 CD1 TYR 36 -46.055 -23.868 30.206 1.00 25.33 C ATOM 294 CD2 TYR 36 -47.415 -23.577 32.126 1.00 26.52 C ATOM 295 CE1 TYR 36 -46.839 -22.978 29.510 1.00 28.03 C ATOM 296 CE2 TYR 36 -48.204 -22.686 31.436 1.00 29.03 C ATOM 297 CZ TYR 36 -47.916 -22.387 30.126 1.00 29.69 C ATOM 298 OH TYR 36 -48.723 -21.473 29.417 1.00 32.87 H ATOM 299 N TRP 37 -44.255 -28.294 31.905 1.00 21.77 N ATOM 300 CA TRP 37 -43.367 -29.221 32.538 1.00 22.10 C ATOM 301 C TRP 37 -42.147 -29.266 31.682 1.00 21.56 C ATOM 302 O TRP 37 -42.165 -28.796 30.545 1.00 21.25 O ATOM 303 CB TRP 37 -43.953 -30.642 32.604 1.00 24.03 C ATOM 304 CG TRP 37 -43.122 -31.654 33.356 1.00 26.01 C ATOM 305 CD1 TRP 37 -42.154 -32.498 32.898 1.00 26.35 C ATOM 306 CD2 TRP 37 -43.257 -31.915 34.762 1.00 31.07 C ATOM 307 NE1 TRP 37 -41.678 -33.272 33.930 1.00 29.66 N ATOM 308 CE2 TRP 37 -42.350 -32.923 35.083 1.00 33.34 C ATOM 309 CE3 TRP 37 -44.076 -31.363 35.705 1.00 35.20 C ATOM 310 CZ2 TRP 37 -42.246 -33.396 36.361 1.00 39.80 C ATOM 311 CZ3 TRP 37 -43.965 -31.841 36.994 1.00 42.08 C ATOM 312 CH2 TRP 37 -43.068 -32.837 37.315 1.00 44.29 H ATOM 313 N VAL 38 -41.037 -29.811 32.211 1.00 21.74 N ATOM 314 CA VAL 38 -39.867 -29.866 31.390 1.00 21.65 C ATOM 315 C VAL 38 -39.853 -31.208 30.737 1.00 22.04 C ATOM 316 O VAL 38 -39.430 -32.198 31.332 1.00 22.64 O ATOM 317 CB VAL 38 -38.591 -29.734 32.169 1.00 22.18 C ATOM 318 CG1 VAL 38 -37.404 -29.919 31.210 1.00 22.67 C ATOM 319 CG2 VAL 38 -38.598 -28.380 32.901 1.00 22.39 C ATOM 320 N TYR 39 -40.338 -31.268 29.483 1.00 21.93 N ATOM 321 CA TYR 39 -40.349 -32.496 28.750 1.00 22.63 C ATOM 322 C TYR 39 -40.259 -32.154 27.299 1.00 22.14 C ATOM 323 O TYR 39 -40.245 -30.981 26.928 1.00 21.55 O ATOM 324 CB TYR 39 -41.606 -33.353 28.992 1.00 23.96 C ATOM 325 CG TYR 39 -42.819 -32.579 28.604 1.00 24.40 C ATOM 326 CD1 TYR 39 -43.287 -31.564 29.407 1.00 25.70 C ATOM 327 CD2 TYR 39 -43.504 -32.887 27.454 1.00 25.86 C ATOM 328 CE1 TYR 39 -44.411 -30.853 29.059 1.00 27.53 C ATOM 329 CE2 TYR 39 -44.630 -32.181 27.099 1.00 27.43 C ATOM 330 CZ TYR 39 -45.083 -31.160 27.902 1.00 27.83 C ATOM 331 OH TYR 39 -46.238 -30.436 27.540 1.00 30.38 H ATOM 332 N GLN 40 -40.173 -33.185 26.438 1.00 22.79 N ATOM 333 CA GLN 40 -40.081 -32.965 25.025 1.00 23.01 C ATOM 334 C GLN 40 -41.346 -32.284 24.618 1.00 22.25 C ATOM 335 O GLN 40 -42.439 -32.751 24.929 1.00 22.76 O ATOM 336 CB GLN 40 -40.020 -34.287 24.234 1.00 25.10 C ATOM 337 CG GLN 40 -39.840 -34.145 22.720 1.00 36.84 C ATOM 338 CD GLN 40 -38.404 -34.517 22.372 1.00 76.77 C ATOM 339 OE1 GLN 40 -37.460 -33.763 22.601 1.00 92.89 O ATOM 340 NE2 GLN 40 -38.234 -35.739 21.798 1.00 89.28 N ATOM 341 N GLY 41 -41.227 -31.152 23.899 1.00 21.63 N ATOM 342 CA GLY 41 -42.403 -30.444 23.491 1.00 21.27 C ATOM 343 C GLY 41 -41.953 -29.114 22.997 1.00 20.78 C ATOM 344 O GLY 41 -40.758 -28.884 22.822 1.00 20.97 O ATOM 345 N LYS 42 -42.910 -28.200 22.744 1.00 20.53 N ATOM 346 CA LYS 42 -42.529 -26.902 22.281 1.00 20.26 C ATOM 347 C LYS 42 -41.866 -26.205 23.420 1.00 20.19 C ATOM 348 O LYS 42 -42.358 -26.196 24.548 1.00 20.33 O ATOM 349 CB LYS 42 -43.716 -26.045 21.808 1.00 20.91 C ATOM 350 CG LYS 42 -44.285 -26.501 20.462 1.00 26.60 C ATOM 351 CD LYS 42 -45.599 -25.820 20.074 1.00 30.78 C ATOM 352 CE LYS 42 -46.073 -26.185 18.666 1.00 61.84 C ATOM 353 NZ LYS 42 -47.353 -25.506 18.360 1.00 70.29 N ATOM 354 N PRO 43 -40.724 -25.647 23.135 1.00 20.24 N ATOM 355 CA PRO 43 -39.997 -24.981 24.177 1.00 20.32 C ATOM 356 C PRO 43 -40.518 -23.609 24.431 1.00 20.12 C ATOM 357 O PRO 43 -41.084 -22.999 23.525 1.00 20.00 O ATOM 358 CB PRO 43 -38.535 -24.968 23.738 1.00 20.82 C ATOM 359 CG PRO 43 -38.424 -26.173 22.791 1.00 25.12 C ATOM 360 CD PRO 43 -39.831 -26.297 22.188 1.00 20.78 C ATOM 361 N VAL 44 -40.345 -23.116 25.671 1.00 20.28 N ATOM 362 CA VAL 44 -40.667 -21.756 25.966 1.00 20.31 C ATOM 363 C VAL 44 -39.333 -21.145 26.229 1.00 20.57 C ATOM 364 O VAL 44 -38.668 -21.490 27.205 1.00 20.70 O ATOM 365 CB VAL 44 -41.483 -21.593 27.216 1.00 20.61 C ATOM 366 CG1 VAL 44 -41.688 -20.093 27.486 1.00 21.07 C ATOM 367 CG2 VAL 44 -42.793 -22.381 27.049 1.00 20.65 C ATOM 368 N MET 45 -38.894 -20.223 25.355 1.00 20.71 N ATOM 369 CA MET 45 -37.593 -19.659 25.549 1.00 21.04 C ATOM 370 C MET 45 -37.645 -18.660 26.646 1.00 21.24 C ATOM 371 O MET 45 -38.695 -18.153 27.039 1.00 21.20 O ATOM 372 CB MET 45 -36.998 -18.949 24.322 1.00 21.38 C ATOM 373 CG MET 45 -36.323 -19.891 23.325 1.00 21.69 C ATOM 374 SD MET 45 -34.810 -20.673 23.966 1.00 23.92 S ATOM 375 CE MET 45 -34.005 -20.913 22.354 1.00 24.59 C ATOM 376 N PRO 46 -36.475 -18.412 27.155 1.00 21.52 N ATOM 377 CA PRO 46 -36.334 -17.434 28.188 1.00 21.76 C ATOM 378 C PRO 46 -36.547 -16.102 27.555 1.00 22.02 C ATOM 379 O PRO 46 -36.460 -16.002 26.332 1.00 22.04 O ATOM 380 CB PRO 46 -34.947 -17.650 28.786 1.00 22.10 C ATOM 381 CG PRO 46 -34.684 -19.147 28.544 1.00 21.98 C ATOM 382 CD PRO 46 -35.488 -19.475 27.275 1.00 21.64 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 76.00 50.0 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 61.12 64.7 34 100.0 34 ARMSMC SURFACE . . . . . . . . 76.76 50.0 56 100.0 56 ARMSMC BURIED . . . . . . . . 72.33 50.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 90.32 31.2 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 91.39 27.6 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 98.74 23.5 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 93.75 25.9 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 68.95 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.81 40.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 57.95 42.9 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 62.52 53.8 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 66.73 40.9 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 107.33 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.12 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 84.89 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 117.46 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 82.12 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.55 66.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 65.55 66.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 87.36 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 65.55 66.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.26 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.26 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2645 CRMSCA SECONDARY STRUCTURE . . 9.22 17 100.0 17 CRMSCA SURFACE . . . . . . . . 9.53 29 100.0 29 CRMSCA BURIED . . . . . . . . 7.80 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.36 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 9.41 85 100.0 85 CRMSMC SURFACE . . . . . . . . 9.60 143 100.0 143 CRMSMC BURIED . . . . . . . . 8.11 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.77 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 11.77 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 11.59 84 100.0 84 CRMSSC SURFACE . . . . . . . . 11.93 127 100.0 127 CRMSSC BURIED . . . . . . . . 11.06 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.63 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 10.62 152 100.0 152 CRMSALL SURFACE . . . . . . . . 10.81 243 100.0 243 CRMSALL BURIED . . . . . . . . 9.79 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.931 0.480 0.581 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 13.606 0.447 0.549 17 100.0 17 ERRCA SURFACE . . . . . . . . 14.804 0.471 0.575 29 100.0 29 ERRCA BURIED . . . . . . . . 15.543 0.521 0.611 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 15.007 0.480 0.579 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 13.629 0.445 0.548 85 100.0 85 ERRMC SURFACE . . . . . . . . 14.923 0.473 0.574 143 100.0 143 ERRMC BURIED . . . . . . . . 15.410 0.514 0.602 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 26.941 0.522 0.607 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 24.883 0.504 0.593 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 19.996 0.458 0.553 84 100.0 84 ERRSC SURFACE . . . . . . . . 28.297 0.526 0.608 127 100.0 127 ERRSC BURIED . . . . . . . . 20.999 0.503 0.604 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 21.254 0.504 0.595 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 17.116 0.453 0.552 152 100.0 152 ERRALL SURFACE . . . . . . . . 21.871 0.503 0.594 243 100.0 243 ERRALL BURIED . . . . . . . . 18.425 0.510 0.603 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 4 22 35 35 DISTCA CA (P) 0.00 0.00 0.00 11.43 62.86 35 DISTCA CA (RMS) 0.00 0.00 0.00 4.16 6.73 DISTCA ALL (N) 0 2 11 37 153 296 296 DISTALL ALL (P) 0.00 0.68 3.72 12.50 51.69 296 DISTALL ALL (RMS) 0.00 1.39 2.52 3.71 6.78 DISTALL END of the results output