####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS113_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS113_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 2.32 2.32 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 34 12 - 45 1.98 2.35 LCS_AVERAGE: 95.76 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 12 - 29 0.96 2.54 LONGEST_CONTINUOUS_SEGMENT: 18 13 - 30 0.99 2.48 LCS_AVERAGE: 41.80 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 18 34 35 4 4 17 23 27 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT F 13 F 13 18 34 35 4 12 21 24 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT H 14 H 14 18 34 35 4 4 13 23 25 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT Y 15 Y 15 18 34 35 11 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT T 16 T 16 18 34 35 11 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT V 17 V 17 18 34 35 11 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT T 18 T 18 18 34 35 11 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT D 19 D 19 18 34 35 11 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT I 20 I 20 18 34 35 11 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT K 21 K 21 18 34 35 11 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT D 22 D 22 18 34 35 10 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT L 23 L 23 18 34 35 9 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT T 24 T 24 18 34 35 11 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT K 25 K 25 18 34 35 11 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT L 26 L 26 18 34 35 11 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT G 27 G 27 18 34 35 11 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT A 28 A 28 18 34 35 8 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT I 29 I 29 18 34 35 5 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT Y 30 Y 30 18 34 35 3 9 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT D 31 D 31 17 34 35 3 8 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT K 32 K 32 12 34 35 3 7 14 21 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT T 33 T 33 12 34 35 3 6 14 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT K 34 K 34 12 34 35 3 9 17 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT K 35 K 35 12 34 35 3 8 16 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT Y 36 Y 36 12 34 35 10 15 17 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT W 37 W 37 10 34 35 3 12 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT V 38 V 38 10 34 35 5 12 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT Y 39 Y 39 10 34 35 3 8 11 17 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT Q 40 Q 40 10 34 35 3 8 11 15 21 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT G 41 G 41 10 34 35 3 8 11 17 26 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT K 42 K 42 10 34 35 3 8 14 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT P 43 P 43 10 34 35 3 8 19 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT V 44 V 44 9 34 35 5 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT M 45 M 45 9 34 35 3 5 9 13 16 28 33 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT P 46 P 46 5 17 35 3 3 5 9 12 15 17 17 20 28 32 35 35 35 35 35 35 35 35 35 LCS_AVERAGE LCS_A: 79.18 ( 41.80 95.76 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 16 21 25 28 30 33 34 34 34 34 35 35 35 35 35 35 35 35 35 GDT PERCENT_AT 31.43 45.71 60.00 71.43 80.00 85.71 94.29 97.14 97.14 97.14 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.34 0.60 1.02 1.33 1.47 1.61 1.88 1.98 1.98 1.98 1.98 2.32 2.32 2.32 2.32 2.32 2.32 2.32 2.32 2.32 GDT RMS_ALL_AT 2.89 2.54 2.42 2.46 2.42 2.41 2.38 2.35 2.35 2.35 2.35 2.32 2.32 2.32 2.32 2.32 2.32 2.32 2.32 2.32 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 30 Y 30 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 2.659 0 0.088 1.007 5.199 53.571 46.143 LGA F 13 F 13 1.669 0 0.181 0.172 4.387 70.833 60.693 LGA H 14 H 14 3.115 0 0.209 1.218 6.825 51.905 38.143 LGA Y 15 Y 15 1.264 0 0.157 0.609 3.498 71.071 65.159 LGA T 16 T 16 1.211 0 0.082 1.133 2.822 81.429 75.578 LGA V 17 V 17 1.666 0 0.098 0.147 2.339 77.143 71.837 LGA T 18 T 18 1.085 0 0.102 1.043 2.973 85.952 79.320 LGA D 19 D 19 0.631 0 0.132 0.277 1.241 88.214 92.917 LGA I 20 I 20 1.451 0 0.041 1.226 3.649 79.286 73.452 LGA K 21 K 21 1.618 0 0.035 1.305 5.000 75.000 66.561 LGA D 22 D 22 0.839 0 0.062 0.303 1.040 90.476 90.536 LGA L 23 L 23 1.086 0 0.102 0.487 3.095 81.429 73.274 LGA T 24 T 24 1.449 0 0.060 0.110 1.858 81.429 78.980 LGA K 25 K 25 0.878 0 0.083 0.474 2.658 90.476 80.000 LGA L 26 L 26 1.024 0 0.124 1.378 4.154 83.690 72.857 LGA G 27 G 27 1.107 0 0.082 0.082 1.223 83.690 83.690 LGA A 28 A 28 0.457 0 0.120 0.175 0.716 97.619 98.095 LGA I 29 I 29 0.436 0 0.152 1.115 2.698 100.000 86.667 LGA Y 30 Y 30 1.376 0 0.099 1.299 9.992 79.286 46.032 LGA D 31 D 31 1.454 0 0.031 0.247 2.303 75.119 77.202 LGA K 32 K 32 3.246 0 0.201 1.134 7.002 57.262 41.376 LGA T 33 T 33 2.265 0 0.143 0.719 2.878 62.857 62.653 LGA K 34 K 34 2.200 0 0.721 1.507 3.934 64.881 61.640 LGA K 35 K 35 3.047 0 0.299 0.930 8.464 46.786 35.820 LGA Y 36 Y 36 2.445 0 0.573 1.337 4.486 55.952 61.429 LGA W 37 W 37 1.418 0 0.461 1.236 3.582 79.524 64.252 LGA V 38 V 38 0.981 0 0.082 0.191 1.290 83.690 86.599 LGA Y 39 Y 39 2.222 0 0.122 0.417 3.738 68.810 63.968 LGA Q 40 Q 40 3.630 0 0.087 0.131 4.082 43.452 43.386 LGA G 41 G 41 3.290 0 0.050 0.050 3.328 53.571 53.571 LGA K 42 K 42 2.022 0 0.225 0.429 6.079 70.952 52.963 LGA P 43 P 43 1.448 0 0.122 0.311 2.287 88.571 79.524 LGA V 44 V 44 1.119 0 0.093 0.140 3.232 81.786 71.293 LGA M 45 M 45 3.956 0 0.138 0.943 8.261 40.119 28.333 LGA P 46 P 46 7.681 0 0.057 0.106 8.429 8.452 8.435 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 2.325 2.379 3.033 71.551 64.925 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 34 1.98 78.571 86.620 1.631 LGA_LOCAL RMSD: 1.985 Number of atoms: 34 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.348 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 2.325 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.610076 * X + 0.486568 * Y + -0.625346 * Z + 10.420569 Y_new = -0.212507 * X + -0.860801 * Y + -0.462452 * Z + 67.152847 Z_new = -0.763314 * X + -0.149241 * Y + 0.628554 * Z + 43.695393 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.806407 0.868427 -0.233118 [DEG: -160.7953 49.7572 -13.3567 ] ZXZ: -0.934040 0.891104 -1.763877 [DEG: -53.5166 51.0565 -101.0627 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS113_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS113_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 34 1.98 86.620 2.32 REMARK ---------------------------------------------------------- MOLECULE T0548TS113_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 87 N HIS 12 -41.788 -28.901 36.449 1.00 0.00 N ATOM 88 CA HIS 12 -42.651 -27.972 35.839 1.00 0.00 C ATOM 89 C HIS 12 -41.821 -26.701 35.670 1.00 0.00 C ATOM 90 O HIS 12 -41.183 -26.324 36.640 1.00 0.00 O ATOM 91 CB HIS 12 -43.840 -27.726 36.696 1.00 0.00 C ATOM 92 CG HIS 12 -44.626 -28.886 37.111 1.00 0.00 C ATOM 93 ND1 HIS 12 -45.790 -29.308 36.509 1.00 0.00 N ATOM 94 CD2 HIS 12 -44.353 -29.801 38.079 1.00 0.00 C ATOM 95 CE1 HIS 12 -46.161 -30.451 37.139 1.00 0.00 C ATOM 96 NE2 HIS 12 -45.320 -30.791 38.099 1.00 0.00 N ATOM 97 N PHE 13 -41.662 -26.210 34.455 1.00 0.00 N ATOM 98 CA PHE 13 -40.815 -25.081 34.246 1.00 0.00 C ATOM 99 C PHE 13 -41.632 -23.827 34.512 1.00 0.00 C ATOM 100 O PHE 13 -42.405 -23.368 33.652 1.00 0.00 O ATOM 101 CB PHE 13 -40.324 -25.226 32.802 1.00 0.00 C ATOM 102 CG PHE 13 -39.232 -26.244 32.543 1.00 0.00 C ATOM 103 CD1 PHE 13 -39.553 -27.584 32.710 1.00 0.00 C ATOM 104 CD2 PHE 13 -37.938 -25.887 32.181 1.00 0.00 C ATOM 105 CE1 PHE 13 -38.596 -28.570 32.533 1.00 0.00 C ATOM 106 CE2 PHE 13 -36.993 -26.897 32.001 1.00 0.00 C ATOM 107 CZ PHE 13 -37.301 -28.238 32.168 1.00 0.00 C ATOM 108 N HIS 14 -41.594 -23.466 35.818 1.00 0.00 N ATOM 109 CA HIS 14 -42.204 -22.259 36.276 1.00 0.00 C ATOM 110 C HIS 14 -41.133 -21.176 35.898 1.00 0.00 C ATOM 111 O HIS 14 -40.369 -20.647 36.715 1.00 0.00 O ATOM 112 CB HIS 14 -42.230 -22.295 37.782 1.00 0.00 C ATOM 113 CG HIS 14 -42.918 -23.384 38.490 1.00 0.00 C ATOM 114 ND1 HIS 14 -42.575 -24.706 38.485 1.00 0.00 N ATOM 115 CD2 HIS 14 -43.943 -23.311 39.400 1.00 0.00 C ATOM 116 CE1 HIS 14 -43.362 -25.419 39.282 1.00 0.00 C ATOM 117 NE2 HIS 14 -44.201 -24.588 39.833 1.00 0.00 N ATOM 118 N TYR 15 -41.099 -20.941 34.566 1.00 0.00 N ATOM 119 CA TYR 15 -40.161 -20.080 33.877 1.00 0.00 C ATOM 120 C TYR 15 -40.136 -18.759 34.656 1.00 0.00 C ATOM 121 O TYR 15 -41.110 -17.996 34.634 1.00 0.00 O ATOM 122 CB TYR 15 -40.421 -19.952 32.330 1.00 0.00 C ATOM 123 CG TYR 15 -40.165 -21.263 31.632 1.00 0.00 C ATOM 124 CD1 TYR 15 -38.869 -21.818 31.532 1.00 0.00 C ATOM 125 CD2 TYR 15 -41.223 -21.923 31.032 1.00 0.00 C ATOM 126 CE1 TYR 15 -38.648 -23.010 30.836 1.00 0.00 C ATOM 127 CE2 TYR 15 -40.996 -23.100 30.357 1.00 0.00 C ATOM 128 CZ TYR 15 -39.727 -23.648 30.264 1.00 0.00 C ATOM 129 OH TYR 15 -39.619 -24.899 29.657 1.00 0.00 H ATOM 130 N THR 16 -38.888 -18.377 34.941 1.00 0.00 N ATOM 131 CA THR 16 -38.537 -17.242 35.742 1.00 0.00 C ATOM 132 C THR 16 -39.215 -15.943 35.346 1.00 0.00 C ATOM 133 O THR 16 -39.618 -15.769 34.217 1.00 0.00 O ATOM 134 CB THR 16 -36.990 -16.940 35.762 1.00 0.00 C ATOM 135 OG1 THR 16 -36.244 -18.165 36.095 1.00 0.00 O ATOM 136 CG2 THR 16 -36.521 -15.849 36.747 1.00 0.00 C ATOM 137 N VAL 17 -39.589 -15.174 36.376 1.00 0.00 N ATOM 138 CA VAL 17 -40.183 -13.843 36.182 1.00 0.00 C ATOM 139 C VAL 17 -39.494 -13.007 35.031 1.00 0.00 C ATOM 140 O VAL 17 -40.221 -12.254 34.374 1.00 0.00 O ATOM 141 CB VAL 17 -40.159 -13.065 37.500 1.00 0.00 C ATOM 142 CG1 VAL 17 -40.698 -11.612 37.278 1.00 0.00 C ATOM 143 CG2 VAL 17 -40.975 -13.783 38.560 1.00 0.00 C ATOM 144 N THR 18 -38.145 -12.977 34.901 1.00 0.00 N ATOM 145 CA THR 18 -37.451 -12.302 33.794 1.00 0.00 C ATOM 146 C THR 18 -37.807 -13.087 32.485 1.00 0.00 C ATOM 147 O THR 18 -37.793 -12.433 31.448 1.00 0.00 O ATOM 148 CB THR 18 -35.965 -12.109 34.012 1.00 0.00 C ATOM 149 OG1 THR 18 -35.125 -13.223 33.878 1.00 0.00 O ATOM 150 CG2 THR 18 -35.671 -11.116 35.141 1.00 0.00 C ATOM 151 N ASP 19 -37.818 -14.450 32.470 1.00 0.00 N ATOM 152 CA ASP 19 -38.222 -15.292 31.369 1.00 0.00 C ATOM 153 C ASP 19 -39.713 -14.895 30.987 1.00 0.00 C ATOM 154 O ASP 19 -39.955 -15.131 29.830 1.00 0.00 O ATOM 155 CB ASP 19 -38.142 -16.719 31.843 1.00 0.00 C ATOM 156 CG ASP 19 -36.738 -17.188 32.164 1.00 0.00 C ATOM 157 OD1 ASP 19 -35.818 -16.410 31.906 1.00 0.00 O ATOM 158 OD2 ASP 19 -36.656 -18.305 32.714 1.00 0.00 O ATOM 159 N ILE 20 -40.732 -14.995 31.896 1.00 0.00 N ATOM 160 CA ILE 20 -42.100 -14.592 31.510 1.00 0.00 C ATOM 161 C ILE 20 -42.098 -13.133 30.960 1.00 0.00 C ATOM 162 O ILE 20 -42.860 -12.920 30.062 1.00 0.00 O ATOM 163 CB ILE 20 -43.190 -14.896 32.584 1.00 0.00 C ATOM 164 CG1 ILE 20 -42.993 -13.993 33.809 1.00 0.00 C ATOM 165 CG2 ILE 20 -43.242 -16.391 32.907 1.00 0.00 C ATOM 166 CD1 ILE 20 -44.194 -14.023 34.811 1.00 0.00 C ATOM 167 N LYS 21 -41.666 -12.114 31.704 1.00 0.00 N ATOM 168 CA LYS 21 -41.592 -10.785 31.110 1.00 0.00 C ATOM 169 C LYS 21 -40.932 -10.890 29.680 1.00 0.00 C ATOM 170 O LYS 21 -41.539 -10.369 28.748 1.00 0.00 O ATOM 171 CB LYS 21 -40.888 -9.825 32.093 1.00 0.00 C ATOM 172 CG LYS 21 -40.734 -8.398 31.564 1.00 0.00 C ATOM 173 CD LYS 21 -40.090 -7.517 32.639 1.00 0.00 C ATOM 174 CE LYS 21 -38.754 -8.066 33.162 1.00 0.00 C ATOM 175 NZ LYS 21 -38.982 -9.163 34.135 1.00 0.00 N ATOM 176 N ASP 22 -39.745 -11.557 29.543 1.00 0.00 N ATOM 177 CA ASP 22 -39.128 -11.779 28.232 1.00 0.00 C ATOM 178 C ASP 22 -40.157 -12.509 27.340 1.00 0.00 C ATOM 179 O ASP 22 -40.229 -12.114 26.157 1.00 0.00 O ATOM 180 CB ASP 22 -37.788 -12.481 28.283 1.00 0.00 C ATOM 181 CG ASP 22 -36.683 -11.657 28.843 1.00 0.00 C ATOM 182 OD1 ASP 22 -36.951 -10.702 29.603 1.00 0.00 O ATOM 183 OD2 ASP 22 -35.522 -11.974 28.508 1.00 0.00 O ATOM 184 N LEU 23 -40.641 -13.662 27.789 1.00 0.00 N ATOM 185 CA LEU 23 -41.620 -14.272 27.066 1.00 0.00 C ATOM 186 C LEU 23 -42.878 -13.428 26.565 1.00 0.00 C ATOM 187 O LEU 23 -42.981 -13.259 25.348 1.00 0.00 O ATOM 188 CB LEU 23 -41.635 -15.666 27.095 1.00 0.00 C ATOM 189 CG LEU 23 -41.126 -16.555 26.263 1.00 0.00 C ATOM 190 CD1 LEU 23 -41.915 -17.832 26.357 1.00 0.00 C ATOM 191 CD2 LEU 23 -41.353 -15.912 24.916 1.00 0.00 C ATOM 192 N THR 24 -43.510 -12.569 27.376 1.00 0.00 N ATOM 193 CA THR 24 -44.632 -11.683 27.018 1.00 0.00 C ATOM 194 C THR 24 -44.234 -10.479 26.061 1.00 0.00 C ATOM 195 O THR 24 -45.078 -10.152 25.222 1.00 0.00 O ATOM 196 CB THR 24 -45.242 -11.110 28.337 1.00 0.00 C ATOM 197 OG1 THR 24 -44.415 -10.110 29.024 1.00 0.00 O ATOM 198 CG2 THR 24 -45.964 -12.162 29.154 1.00 0.00 C ATOM 199 N LYS 25 -43.122 -9.763 26.331 1.00 0.00 N ATOM 200 CA LYS 25 -42.618 -8.697 25.459 1.00 0.00 C ATOM 201 C LYS 25 -42.396 -9.125 23.969 1.00 0.00 C ATOM 202 O LYS 25 -42.638 -8.271 23.109 1.00 0.00 O ATOM 203 CB LYS 25 -41.308 -8.083 25.975 1.00 0.00 C ATOM 204 CG LYS 25 -41.432 -7.590 27.420 1.00 0.00 C ATOM 205 CD LYS 25 -40.144 -7.634 28.249 1.00 0.00 C ATOM 206 CE LYS 25 -38.874 -7.214 27.505 1.00 0.00 C ATOM 207 NZ LYS 25 -37.707 -7.294 28.416 1.00 0.00 N ATOM 208 N LEU 26 -42.302 -10.400 23.668 1.00 0.00 N ATOM 209 CA LEU 26 -42.148 -10.976 22.316 1.00 0.00 C ATOM 210 C LEU 26 -43.494 -11.513 21.771 1.00 0.00 C ATOM 211 O LEU 26 -43.470 -12.062 20.674 1.00 0.00 O ATOM 212 CB LEU 26 -41.042 -12.038 22.342 1.00 0.00 C ATOM 213 CG LEU 26 -39.663 -11.468 22.554 1.00 0.00 C ATOM 214 CD1 LEU 26 -38.565 -12.535 22.428 1.00 0.00 C ATOM 215 CD2 LEU 26 -39.413 -10.237 21.667 1.00 0.00 C ATOM 216 N GLY 27 -44.663 -11.089 22.327 1.00 0.00 N ATOM 217 CA GLY 27 -45.992 -11.554 21.995 1.00 0.00 C ATOM 218 C GLY 27 -46.252 -13.065 22.279 1.00 0.00 C ATOM 219 O GLY 27 -46.994 -13.676 21.513 1.00 0.00 O ATOM 220 N ALA 28 -45.685 -13.654 23.347 1.00 0.00 N ATOM 221 CA ALA 28 -45.891 -14.990 23.795 1.00 0.00 C ATOM 222 C ALA 28 -46.963 -15.048 24.881 1.00 0.00 C ATOM 223 O ALA 28 -46.958 -14.287 25.873 1.00 0.00 O ATOM 224 CB ALA 28 -44.555 -15.414 24.373 1.00 0.00 C ATOM 225 N ILE 29 -47.712 -16.110 24.794 1.00 0.00 N ATOM 226 CA ILE 29 -48.710 -16.418 25.763 1.00 0.00 C ATOM 227 C ILE 29 -48.023 -17.358 26.836 1.00 0.00 C ATOM 228 O ILE 29 -47.616 -18.488 26.495 1.00 0.00 O ATOM 229 CB ILE 29 -49.927 -17.143 25.125 1.00 0.00 C ATOM 230 CG1 ILE 29 -50.557 -16.345 23.993 1.00 0.00 C ATOM 231 CG2 ILE 29 -50.900 -17.611 26.235 1.00 0.00 C ATOM 232 CD1 ILE 29 -51.514 -17.204 23.141 1.00 0.00 C ATOM 233 N TYR 30 -47.989 -16.857 28.074 1.00 0.00 N ATOM 234 CA TYR 30 -47.472 -17.642 29.192 1.00 0.00 C ATOM 235 C TYR 30 -48.572 -18.631 29.593 1.00 0.00 C ATOM 236 O TYR 30 -49.585 -18.313 30.245 1.00 0.00 O ATOM 237 CB TYR 30 -47.166 -16.697 30.371 1.00 0.00 C ATOM 238 CG TYR 30 -48.216 -15.640 30.678 1.00 0.00 C ATOM 239 CD1 TYR 30 -49.359 -15.936 31.374 1.00 0.00 C ATOM 240 CD2 TYR 30 -48.046 -14.377 30.162 1.00 0.00 C ATOM 241 CE1 TYR 30 -50.338 -14.985 31.543 1.00 0.00 C ATOM 242 CE2 TYR 30 -49.021 -13.417 30.322 1.00 0.00 C ATOM 243 CZ TYR 30 -50.167 -13.729 31.018 1.00 0.00 C ATOM 244 OH TYR 30 -51.160 -12.774 31.141 1.00 0.00 H ATOM 245 N ASP 31 -48.634 -19.663 28.763 1.00 0.00 N ATOM 246 CA ASP 31 -49.661 -20.651 28.973 1.00 0.00 C ATOM 247 C ASP 31 -49.201 -21.477 30.188 1.00 0.00 C ATOM 248 O ASP 31 -48.411 -22.419 30.058 1.00 0.00 O ATOM 249 CB ASP 31 -49.889 -21.491 27.705 1.00 0.00 C ATOM 250 CG ASP 31 -50.831 -22.675 27.925 1.00 0.00 C ATOM 251 OD1 ASP 31 -51.534 -22.776 28.955 1.00 0.00 O ATOM 252 OD2 ASP 31 -50.886 -23.485 26.946 1.00 0.00 O ATOM 253 N LYS 32 -49.322 -20.775 31.349 1.00 0.00 N ATOM 254 CA LYS 32 -49.079 -21.257 32.704 1.00 0.00 C ATOM 255 C LYS 32 -49.801 -22.599 33.024 1.00 0.00 C ATOM 256 O LYS 32 -49.378 -23.220 34.011 1.00 0.00 O ATOM 257 CB LYS 32 -49.703 -20.193 33.657 1.00 0.00 C ATOM 258 CG LYS 32 -49.546 -20.607 35.154 1.00 0.00 C ATOM 259 CD LYS 32 -50.016 -19.507 36.103 1.00 0.00 C ATOM 260 CE LYS 32 -50.020 -19.914 37.577 1.00 0.00 C ATOM 261 NZ LYS 32 -50.482 -18.779 38.404 1.00 0.00 N ATOM 262 N THR 33 -50.851 -23.024 32.281 1.00 0.00 N ATOM 263 CA THR 33 -51.489 -24.261 32.551 1.00 0.00 C ATOM 264 C THR 33 -50.380 -25.347 32.682 1.00 0.00 C ATOM 265 O THR 33 -50.439 -26.055 33.708 1.00 0.00 O ATOM 266 CB THR 33 -52.568 -24.537 31.457 1.00 0.00 C ATOM 267 OG1 THR 33 -53.652 -23.544 31.495 1.00 0.00 O ATOM 268 CG2 THR 33 -53.248 -25.958 31.744 1.00 0.00 C ATOM 269 N LYS 34 -49.567 -25.613 31.667 1.00 0.00 N ATOM 270 CA LYS 34 -48.467 -26.525 31.723 1.00 0.00 C ATOM 271 C LYS 34 -47.206 -25.618 31.876 1.00 0.00 C ATOM 272 O LYS 34 -47.237 -24.388 31.556 1.00 0.00 O ATOM 273 CB LYS 34 -48.398 -27.401 30.508 1.00 0.00 C ATOM 274 CG LYS 34 -49.598 -28.275 30.310 1.00 0.00 C ATOM 275 CD LYS 34 -49.842 -28.704 28.867 1.00 0.00 C ATOM 276 CE LYS 34 -50.160 -27.508 27.969 1.00 0.00 C ATOM 277 NZ LYS 34 -51.135 -26.620 28.644 1.00 0.00 N ATOM 278 N LYS 35 -46.117 -26.143 32.400 1.00 0.00 N ATOM 279 CA LYS 35 -44.975 -25.301 32.495 1.00 0.00 C ATOM 280 C LYS 35 -44.257 -25.325 31.090 1.00 0.00 C ATOM 281 O LYS 35 -43.036 -25.531 30.978 1.00 0.00 O ATOM 282 CB LYS 35 -44.134 -25.814 33.613 1.00 0.00 C ATOM 283 CG LYS 35 -44.517 -25.483 35.003 1.00 0.00 C ATOM 284 CD LYS 35 -44.946 -24.029 35.085 1.00 0.00 C ATOM 285 CE LYS 35 -45.241 -23.530 36.492 1.00 0.00 C ATOM 286 NZ LYS 35 -45.733 -22.116 36.434 1.00 0.00 N ATOM 287 N TYR 36 -45.027 -24.733 30.162 1.00 0.00 N ATOM 288 CA TYR 36 -44.722 -24.581 28.753 1.00 0.00 C ATOM 289 C TYR 36 -44.132 -23.176 28.382 1.00 0.00 C ATOM 290 O TYR 36 -43.178 -23.176 27.673 1.00 0.00 O ATOM 291 CB TYR 36 -46.019 -24.948 28.022 1.00 0.00 C ATOM 292 CG TYR 36 -46.112 -26.373 27.590 1.00 0.00 C ATOM 293 CD1 TYR 36 -46.117 -27.333 28.604 1.00 0.00 C ATOM 294 CD2 TYR 36 -46.206 -26.782 26.255 1.00 0.00 C ATOM 295 CE1 TYR 36 -46.208 -28.680 28.273 1.00 0.00 C ATOM 296 CE2 TYR 36 -46.519 -28.097 25.920 1.00 0.00 C ATOM 297 CZ TYR 36 -46.447 -29.036 26.952 1.00 0.00 C ATOM 298 OH TYR 36 -46.558 -30.361 26.703 1.00 0.00 H ATOM 299 N TRP 37 -44.675 -22.067 28.908 1.00 0.00 N ATOM 300 CA TRP 37 -44.160 -20.756 28.601 1.00 0.00 C ATOM 301 C TRP 37 -44.065 -20.577 27.074 1.00 0.00 C ATOM 302 O TRP 37 -43.096 -20.147 26.544 1.00 0.00 O ATOM 303 CB TRP 37 -42.781 -20.552 29.145 1.00 0.00 C ATOM 304 CG TRP 37 -42.445 -19.061 29.319 1.00 0.00 C ATOM 305 CD1 TRP 37 -41.397 -18.537 30.008 1.00 0.00 C ATOM 306 CD2 TRP 37 -43.267 -17.942 28.924 1.00 0.00 C ATOM 307 NE1 TRP 37 -41.514 -17.176 30.064 1.00 0.00 N ATOM 308 CE2 TRP 37 -42.658 -16.793 29.411 1.00 0.00 C ATOM 309 CE3 TRP 37 -44.455 -17.861 28.251 1.00 0.00 C ATOM 310 CZ2 TRP 37 -43.222 -15.565 29.241 1.00 0.00 C ATOM 311 CZ3 TRP 37 -44.990 -16.609 28.037 1.00 0.00 C ATOM 312 CH2 TRP 37 -44.389 -15.473 28.525 1.00 0.00 H ATOM 313 N VAL 38 -45.251 -20.507 26.511 1.00 0.00 N ATOM 314 CA VAL 38 -45.310 -20.422 25.108 1.00 0.00 C ATOM 315 C VAL 38 -44.995 -19.036 24.542 1.00 0.00 C ATOM 316 O VAL 38 -45.595 -18.027 24.923 1.00 0.00 O ATOM 317 CB VAL 38 -46.792 -20.753 24.677 1.00 0.00 C ATOM 318 CG1 VAL 38 -46.888 -20.719 23.098 1.00 0.00 C ATOM 319 CG2 VAL 38 -47.222 -22.138 25.081 1.00 0.00 C ATOM 320 N TYR 39 -43.809 -18.963 23.928 1.00 0.00 N ATOM 321 CA TYR 39 -43.313 -17.836 23.193 1.00 0.00 C ATOM 322 C TYR 39 -44.092 -17.804 21.817 1.00 0.00 C ATOM 323 O TYR 39 -43.791 -18.616 20.975 1.00 0.00 O ATOM 324 CB TYR 39 -41.864 -18.016 22.857 1.00 0.00 C ATOM 325 CG TYR 39 -41.296 -17.118 21.831 1.00 0.00 C ATOM 326 CD1 TYR 39 -40.820 -15.869 22.149 1.00 0.00 C ATOM 327 CD2 TYR 39 -41.243 -17.541 20.521 1.00 0.00 C ATOM 328 CE1 TYR 39 -40.308 -15.049 21.171 1.00 0.00 C ATOM 329 CE2 TYR 39 -40.732 -16.724 19.542 1.00 0.00 C ATOM 330 CZ TYR 39 -40.263 -15.475 19.866 1.00 0.00 C ATOM 331 OH TYR 39 -39.734 -14.634 18.863 1.00 0.00 H ATOM 332 N GLN 40 -44.861 -16.750 21.507 1.00 0.00 N ATOM 333 CA GLN 40 -45.555 -16.615 20.199 1.00 0.00 C ATOM 334 C GLN 40 -46.306 -17.932 19.761 1.00 0.00 C ATOM 335 O GLN 40 -46.469 -18.135 18.546 1.00 0.00 O ATOM 336 CB GLN 40 -44.586 -16.151 19.133 1.00 0.00 C ATOM 337 CG GLN 40 -43.959 -14.813 19.275 1.00 0.00 C ATOM 338 CD GLN 40 -43.047 -14.572 18.076 1.00 0.00 C ATOM 339 OE1 GLN 40 -42.788 -15.484 17.291 1.00 0.00 O ATOM 340 NE2 GLN 40 -42.540 -13.319 17.927 1.00 0.00 N ATOM 341 N GLY 41 -47.134 -18.518 20.629 1.00 0.00 N ATOM 342 CA GLY 41 -47.869 -19.760 20.397 1.00 0.00 C ATOM 343 C GLY 41 -46.915 -20.990 20.281 1.00 0.00 C ATOM 344 O GLY 41 -47.386 -22.010 19.742 1.00 0.00 O ATOM 345 N LYS 42 -45.629 -20.878 20.660 1.00 0.00 N ATOM 346 CA LYS 42 -44.737 -22.001 20.601 1.00 0.00 C ATOM 347 C LYS 42 -44.073 -22.182 22.023 1.00 0.00 C ATOM 348 O LYS 42 -43.114 -21.437 22.285 1.00 0.00 O ATOM 349 CB LYS 42 -43.667 -21.454 19.671 1.00 0.00 C ATOM 350 CG LYS 42 -44.105 -21.172 18.237 1.00 0.00 C ATOM 351 CD LYS 42 -45.006 -22.275 17.649 1.00 0.00 C ATOM 352 CE LYS 42 -45.593 -21.847 16.307 1.00 0.00 C ATOM 353 NZ LYS 42 -46.348 -22.935 15.710 1.00 0.00 N ATOM 354 N PRO 43 -44.502 -23.065 23.004 1.00 0.00 N ATOM 355 CA PRO 43 -43.936 -23.010 24.291 1.00 0.00 C ATOM 356 C PRO 43 -42.368 -23.192 24.429 1.00 0.00 C ATOM 357 O PRO 43 -41.706 -23.684 23.517 1.00 0.00 O ATOM 358 CB PRO 43 -44.592 -24.068 25.232 1.00 0.00 C ATOM 359 CG PRO 43 -44.901 -25.134 24.124 1.00 0.00 C ATOM 360 CD PRO 43 -45.302 -24.298 22.903 1.00 0.00 C ATOM 361 N VAL 44 -41.850 -22.540 25.513 1.00 0.00 N ATOM 362 CA VAL 44 -40.441 -22.663 25.976 1.00 0.00 C ATOM 363 C VAL 44 -40.353 -24.134 26.334 1.00 0.00 C ATOM 364 O VAL 44 -40.971 -24.546 27.339 1.00 0.00 O ATOM 365 CB VAL 44 -40.257 -21.848 27.312 1.00 0.00 C ATOM 366 CG1 VAL 44 -38.961 -22.081 28.015 1.00 0.00 C ATOM 367 CG2 VAL 44 -40.494 -20.309 26.975 1.00 0.00 C ATOM 368 N MET 45 -39.530 -24.895 25.677 1.00 0.00 N ATOM 369 CA MET 45 -39.592 -26.360 25.943 1.00 0.00 C ATOM 370 C MET 45 -38.691 -26.842 27.094 1.00 0.00 C ATOM 371 O MET 45 -37.678 -26.139 27.326 1.00 0.00 O ATOM 372 CB MET 45 -39.176 -27.075 24.660 1.00 0.00 C ATOM 373 CG MET 45 -40.187 -27.114 23.542 1.00 0.00 C ATOM 374 SD MET 45 -41.681 -28.082 23.902 1.00 0.00 S ATOM 375 CE MET 45 -42.238 -28.141 22.174 1.00 0.00 C ATOM 376 N PRO 46 -39.059 -27.797 28.068 1.00 0.00 N ATOM 377 CA PRO 46 -38.077 -28.176 28.993 1.00 0.00 C ATOM 378 C PRO 46 -36.707 -28.460 28.334 1.00 0.00 C ATOM 379 O PRO 46 -36.689 -28.833 27.182 1.00 0.00 O ATOM 380 CB PRO 46 -38.618 -29.346 29.811 1.00 0.00 C ATOM 381 CG PRO 46 -40.152 -29.228 29.626 1.00 0.00 C ATOM 382 CD PRO 46 -40.215 -28.818 28.120 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 47.52 66.2 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 44.76 70.6 34 100.0 34 ARMSMC SURFACE . . . . . . . . 46.52 67.9 56 100.0 56 ARMSMC BURIED . . . . . . . . 51.93 58.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.95 50.0 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 80.69 44.8 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 81.43 52.9 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 82.02 44.4 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 39.55 80.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.16 44.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 56.34 52.4 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 51.74 53.8 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 70.12 50.0 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 70.41 0.0 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.76 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 73.47 57.1 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 82.54 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 68.76 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.46 66.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 78.46 66.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 92.73 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 78.46 66.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.32 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.32 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.0664 CRMSCA SECONDARY STRUCTURE . . 1.42 17 100.0 17 CRMSCA SURFACE . . . . . . . . 2.51 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.05 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.42 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 1.52 85 100.0 85 CRMSMC SURFACE . . . . . . . . 2.59 143 100.0 143 CRMSMC BURIED . . . . . . . . 1.39 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.53 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 3.50 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 2.84 84 100.0 84 CRMSSC SURFACE . . . . . . . . 3.75 127 100.0 127 CRMSSC BURIED . . . . . . . . 2.35 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.04 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 2.34 152 100.0 152 CRMSALL SURFACE . . . . . . . . 3.23 243 100.0 243 CRMSALL BURIED . . . . . . . . 1.95 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.934 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 1.311 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 2.126 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 1.005 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.001 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 1.371 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 2.157 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 1.256 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.031 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 2.966 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 2.353 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 3.215 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 2.227 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.525 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 1.903 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 2.693 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 1.756 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 6 22 28 34 35 35 35 DISTCA CA (P) 17.14 62.86 80.00 97.14 100.00 35 DISTCA CA (RMS) 0.68 1.23 1.57 2.01 2.32 DISTCA ALL (N) 41 134 212 272 295 296 296 DISTALL ALL (P) 13.85 45.27 71.62 91.89 99.66 296 DISTALL ALL (RMS) 0.72 1.30 1.83 2.41 2.99 DISTALL END of the results output