####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS104_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS104_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 2.34 2.34 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 34 12 - 45 1.99 2.37 LCS_AVERAGE: 95.76 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 12 - 29 0.96 2.58 LCS_AVERAGE: 42.45 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 18 34 35 3 4 9 23 27 29 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT F 13 F 13 18 34 35 3 14 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT H 14 H 14 18 34 35 3 4 10 21 25 29 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT Y 15 Y 15 18 34 35 12 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT T 16 T 16 18 34 35 12 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT V 17 V 17 18 34 35 12 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT T 18 T 18 18 34 35 12 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT D 19 D 19 18 34 35 12 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT I 20 I 20 18 34 35 12 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT K 21 K 21 18 34 35 12 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT D 22 D 22 18 34 35 12 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT L 23 L 23 18 34 35 5 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT T 24 T 24 18 34 35 12 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT K 25 K 25 18 34 35 12 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT L 26 L 26 18 34 35 12 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT G 27 G 27 18 34 35 12 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT A 28 A 28 18 34 35 7 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT I 29 I 29 18 34 35 5 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT Y 30 Y 30 17 34 35 3 10 18 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT D 31 D 31 17 34 35 3 8 17 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT K 32 K 32 13 34 35 3 7 15 22 27 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT T 33 T 33 13 34 35 3 5 15 23 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT K 34 K 34 13 34 35 4 10 18 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT K 35 K 35 13 34 35 3 10 18 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT Y 36 Y 36 12 34 35 9 13 18 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT W 37 W 37 11 34 35 4 8 18 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT V 38 V 38 11 34 35 4 8 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT Y 39 Y 39 11 34 35 3 8 12 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT Q 40 Q 40 11 34 35 3 8 11 15 21 30 31 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT G 41 G 41 11 34 35 3 8 11 16 27 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT K 42 K 42 11 34 35 4 8 12 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT P 43 P 43 11 34 35 4 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT V 44 V 44 11 34 35 4 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT M 45 M 45 5 34 35 0 5 8 10 16 28 33 34 34 34 34 34 35 35 35 35 35 35 35 35 LCS_GDT P 46 P 46 5 17 35 1 3 6 8 12 15 17 18 23 27 30 34 35 35 35 35 35 35 35 35 LCS_AVERAGE LCS_A: 79.40 ( 42.45 95.76 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 16 19 25 28 30 33 34 34 34 34 34 35 35 35 35 35 35 35 35 GDT PERCENT_AT 34.29 45.71 54.29 71.43 80.00 85.71 94.29 97.14 97.14 97.14 97.14 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.31 0.58 0.87 1.28 1.47 1.65 1.91 1.99 1.99 1.99 1.99 1.99 2.34 2.34 2.34 2.34 2.34 2.34 2.34 2.34 GDT RMS_ALL_AT 2.68 2.54 2.47 2.43 2.44 2.45 2.37 2.37 2.37 2.37 2.37 2.37 2.34 2.34 2.34 2.34 2.34 2.34 2.34 2.34 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 2.579 0 0.145 1.025 4.526 51.905 49.810 LGA F 13 F 13 1.718 0 0.222 0.241 3.838 70.833 63.896 LGA H 14 H 14 3.341 0 0.204 1.518 6.642 51.905 40.857 LGA Y 15 Y 15 1.491 0 0.103 0.651 5.300 71.071 61.667 LGA T 16 T 16 1.672 0 0.024 1.123 4.013 77.143 67.959 LGA V 17 V 17 1.642 0 0.054 1.133 3.866 77.143 72.313 LGA T 18 T 18 1.081 0 0.040 0.068 1.273 85.952 84.014 LGA D 19 D 19 0.644 0 0.032 0.198 0.836 90.476 94.048 LGA I 20 I 20 1.298 0 0.037 1.126 3.147 81.429 73.393 LGA K 21 K 21 1.413 0 0.029 0.912 3.745 81.429 67.566 LGA D 22 D 22 0.802 0 0.116 0.200 1.062 88.214 89.345 LGA L 23 L 23 1.328 0 0.068 0.777 2.807 81.429 73.155 LGA T 24 T 24 1.258 0 0.034 0.081 1.639 81.429 80.204 LGA K 25 K 25 1.007 0 0.107 0.644 2.675 81.429 76.878 LGA L 26 L 26 0.919 0 0.047 0.941 3.015 90.476 84.286 LGA G 27 G 27 0.801 0 0.080 0.080 0.801 90.476 90.476 LGA A 28 A 28 0.376 0 0.032 0.034 0.587 97.619 98.095 LGA I 29 I 29 0.300 0 0.092 1.124 2.903 97.619 86.548 LGA Y 30 Y 30 1.546 0 0.174 0.367 3.997 72.976 62.659 LGA D 31 D 31 1.666 0 0.079 0.359 2.401 68.810 71.905 LGA K 32 K 32 3.311 0 0.164 0.975 6.847 53.571 40.106 LGA T 33 T 33 2.641 0 0.101 0.631 3.294 61.190 57.415 LGA K 34 K 34 2.118 0 0.181 0.644 2.496 64.762 69.365 LGA K 35 K 35 2.738 0 0.180 1.094 6.067 55.595 49.683 LGA Y 36 Y 36 2.119 0 0.145 1.315 5.261 70.952 61.032 LGA W 37 W 37 1.697 0 0.123 0.900 3.702 77.143 63.571 LGA V 38 V 38 1.172 0 0.057 0.166 1.879 77.143 78.980 LGA Y 39 Y 39 1.903 0 0.136 0.387 3.606 72.976 62.817 LGA Q 40 Q 40 3.751 0 0.052 0.880 7.447 43.452 34.815 LGA G 41 G 41 3.205 0 0.042 0.042 3.330 53.571 53.571 LGA K 42 K 42 2.276 0 0.127 0.869 9.629 68.810 45.185 LGA P 43 P 43 1.083 0 0.075 0.135 2.366 86.190 78.163 LGA V 44 V 44 1.147 0 0.103 0.160 2.733 79.762 74.558 LGA M 45 M 45 3.902 0 0.183 0.818 7.733 38.214 26.488 LGA P 46 P 46 7.807 0 0.072 0.086 8.748 9.048 9.048 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 2.344 2.349 2.949 71.490 65.539 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 34 1.99 78.571 86.094 1.624 LGA_LOCAL RMSD: 1.994 Number of atoms: 34 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.367 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 2.344 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.476809 * X + 0.469809 * Y + -0.742922 * Z + 10.295799 Y_new = -0.054962 * X + -0.859464 * Y + -0.508234 * Z + 60.808720 Z_new = -0.877287 * X + -0.201498 * Y + 0.435621 * Z + 65.454384 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.026829 1.070180 -0.433244 [DEG: -173.4245 61.3168 -24.8230 ] ZXZ: -0.970820 1.120068 -1.796564 [DEG: -55.6239 64.1752 -102.9355 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS104_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS104_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 34 1.99 86.094 2.34 REMARK ---------------------------------------------------------- MOLECULE T0548TS104_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 87 N HIS 12 -41.281 -28.804 36.503 1.00647.35 N ATOM 88 CA HIS 12 -42.403 -28.100 35.978 1.00647.35 C ATOM 89 ND1 HIS 12 -45.178 -29.882 37.078 1.00647.35 N ATOM 90 CG HIS 12 -43.996 -29.322 37.502 1.00647.35 C ATOM 91 CB HIS 12 -43.502 -27.977 37.045 1.00647.35 C ATOM 92 NE2 HIS 12 -44.241 -31.356 38.454 1.00647.35 N ATOM 93 CD2 HIS 12 -43.434 -30.237 38.342 1.00647.35 C ATOM 94 CE1 HIS 12 -45.276 -31.096 37.678 1.00647.35 C ATOM 95 C HIS 12 -41.819 -26.762 35.710 1.00647.35 C ATOM 96 O HIS 12 -41.451 -26.050 36.640 1.00647.35 O ATOM 97 N PHE 13 -41.690 -26.373 34.433 1.00946.76 N ATOM 98 CA PHE 13 -41.007 -25.139 34.211 1.00946.76 C ATOM 99 CB PHE 13 -40.600 -24.923 32.737 1.00946.76 C ATOM 100 CG PHE 13 -39.431 -25.791 32.375 1.00946.76 C ATOM 101 CD1 PHE 13 -39.525 -27.157 32.337 1.00946.76 C ATOM 102 CD2 PHE 13 -38.226 -25.242 32.015 1.00946.76 C ATOM 103 CE1 PHE 13 -38.432 -27.923 31.995 1.00946.76 C ATOM 104 CE2 PHE 13 -37.135 -25.986 31.667 1.00946.76 C ATOM 105 CZ PHE 13 -37.232 -27.345 31.667 1.00946.76 C ATOM 106 C PHE 13 -41.890 -24.003 34.597 1.00946.76 C ATOM 107 O PHE 13 -42.652 -23.498 33.772 1.00946.76 O ATOM 108 N HIS 14 -41.807 -23.564 35.873 1.00940.15 N ATOM 109 CA HIS 14 -42.496 -22.348 36.133 1.00940.15 C ATOM 110 ND1 HIS 14 -43.968 -23.992 39.079 1.00940.15 N ATOM 111 CG HIS 14 -43.001 -23.154 38.565 1.00940.15 C ATOM 112 CB HIS 14 -43.233 -22.154 37.483 1.00940.15 C ATOM 113 NE2 HIS 14 -42.102 -24.401 40.208 1.00940.15 N ATOM 114 CD2 HIS 14 -41.875 -23.419 39.259 1.00940.15 C ATOM 115 CE1 HIS 14 -43.376 -24.715 40.061 1.00940.15 C ATOM 116 C HIS 14 -41.502 -21.285 35.859 1.00940.15 C ATOM 117 O HIS 14 -40.924 -20.673 36.759 1.00940.15 O ATOM 118 N TYR 15 -41.311 -21.093 34.537 1.00944.96 N ATOM 119 CA TYR 15 -40.441 -20.167 33.887 1.00944.96 C ATOM 120 CB TYR 15 -40.939 -19.845 32.475 1.00944.96 C ATOM 121 CG TYR 15 -39.878 -20.520 31.734 1.00944.96 C ATOM 122 CD1 TYR 15 -39.558 -21.787 32.080 1.00944.96 C ATOM 123 CD2 TYR 15 -39.129 -19.860 30.807 1.00944.96 C ATOM 124 CE1 TYR 15 -38.536 -22.410 31.433 1.00944.96 C ATOM 125 CE2 TYR 15 -38.102 -20.490 30.157 1.00944.96 C ATOM 126 CZ TYR 15 -37.809 -21.786 30.467 1.00944.96 C ATOM 127 OH TYR 15 -36.758 -22.467 29.823 1.00944.96 O ATOM 128 C TYR 15 -40.394 -18.948 34.692 1.00944.96 C ATOM 129 O TYR 15 -41.423 -18.352 34.980 1.00944.96 O ATOM 130 N THR 16 -39.172 -18.512 35.026 1.00514.17 N ATOM 131 CA THR 16 -39.071 -17.469 35.988 1.00514.17 C ATOM 132 CB THR 16 -37.693 -17.413 36.582 1.00514.17 C ATOM 133 OG1 THR 16 -37.365 -18.715 37.043 1.00514.17 O ATOM 134 CG2 THR 16 -37.680 -16.484 37.805 1.00514.17 C ATOM 135 C THR 16 -39.540 -16.162 35.416 1.00514.17 C ATOM 136 O THR 16 -39.897 -16.057 34.245 1.00514.17 O ATOM 137 N VAL 17 -39.593 -15.129 36.283 1.00358.93 N ATOM 138 CA VAL 17 -40.102 -13.822 35.995 1.00358.93 C ATOM 139 CB VAL 17 -40.068 -12.875 37.160 1.00358.93 C ATOM 140 CG1 VAL 17 -41.209 -13.237 38.110 1.00358.93 C ATOM 141 CG2 VAL 17 -38.683 -12.947 37.831 1.00358.93 C ATOM 142 C VAL 17 -39.365 -13.148 34.895 1.00358.93 C ATOM 143 O VAL 17 -39.978 -12.474 34.072 1.00358.93 O ATOM 144 N THR 18 -38.034 -13.261 34.844 1.00316.93 N ATOM 145 CA THR 18 -37.348 -12.569 33.795 1.00316.93 C ATOM 146 CB THR 18 -35.863 -12.783 33.875 1.00316.93 C ATOM 147 OG1 THR 18 -35.376 -12.353 35.137 1.00316.93 O ATOM 148 CG2 THR 18 -35.173 -11.995 32.750 1.00316.93 C ATOM 149 C THR 18 -37.830 -13.166 32.517 1.00316.93 C ATOM 150 O THR 18 -38.178 -12.467 31.566 1.00316.93 O ATOM 151 N ASP 19 -37.909 -14.503 32.503 1.00509.52 N ATOM 152 CA ASP 19 -38.292 -15.234 31.335 1.00509.52 C ATOM 153 CB ASP 19 -38.270 -16.750 31.604 1.00509.52 C ATOM 154 CG ASP 19 -36.816 -17.173 31.776 1.00509.52 C ATOM 155 OD1 ASP 19 -35.996 -16.841 30.880 1.00509.52 O ATOM 156 OD2 ASP 19 -36.502 -17.821 32.811 1.00509.52 O ATOM 157 C ASP 19 -39.677 -14.836 30.926 1.00509.52 C ATOM 158 O ASP 19 -39.907 -14.504 29.765 1.00509.52 O ATOM 159 N ILE 20 -40.628 -14.799 31.880 1.00416.65 N ATOM 160 CA ILE 20 -41.990 -14.479 31.548 1.00416.65 C ATOM 161 CB ILE 20 -42.927 -14.529 32.732 1.00416.65 C ATOM 162 CG2 ILE 20 -42.463 -13.551 33.804 1.00416.65 C ATOM 163 CG1 ILE 20 -44.372 -14.252 32.311 1.00416.65 C ATOM 164 CD1 ILE 20 -45.344 -14.302 33.489 1.00416.65 C ATOM 165 C ILE 20 -42.017 -13.094 30.977 1.00416.65 C ATOM 166 O ILE 20 -42.760 -12.795 30.045 1.00416.65 O ATOM 167 N LYS 21 -41.206 -12.184 31.527 1.00345.47 N ATOM 168 CA LYS 21 -41.238 -10.847 31.015 1.00345.47 C ATOM 169 CB LYS 21 -40.268 -9.889 31.738 1.00345.47 C ATOM 170 CG LYS 21 -40.579 -9.651 33.217 1.00345.47 C ATOM 171 CD LYS 21 -39.466 -8.901 33.954 1.00345.47 C ATOM 172 CE LYS 21 -39.794 -7.432 34.216 1.00345.47 C ATOM 173 NZ LYS 21 -38.596 -6.723 34.721 1.00345.47 N ATOM 174 C LYS 21 -40.825 -10.857 29.573 1.00345.47 C ATOM 175 O LYS 21 -41.447 -10.197 28.742 1.00345.47 O ATOM 176 N ASP 22 -39.767 -11.616 29.229 1.00332.60 N ATOM 177 CA ASP 22 -39.281 -11.571 27.882 1.00332.60 C ATOM 178 CB ASP 22 -38.018 -12.422 27.650 1.00332.60 C ATOM 179 CG ASP 22 -36.824 -11.658 28.200 1.00332.60 C ATOM 180 OD1 ASP 22 -36.976 -10.435 28.462 1.00332.60 O ATOM 181 OD2 ASP 22 -35.742 -12.282 28.354 1.00332.60 O ATOM 182 C ASP 22 -40.315 -12.046 26.923 1.00332.60 C ATOM 183 O ASP 22 -40.643 -11.339 25.973 1.00332.60 O ATOM 184 N LEU 23 -40.896 -13.233 27.156 1.00490.86 N ATOM 185 CA LEU 23 -41.808 -13.722 26.172 1.00490.86 C ATOM 186 CB LEU 23 -42.213 -15.190 26.333 1.00490.86 C ATOM 187 CG LEU 23 -41.103 -16.187 25.952 1.00490.86 C ATOM 188 CD1 LEU 23 -39.953 -16.212 26.964 1.00490.86 C ATOM 189 CD2 LEU 23 -41.693 -17.574 25.689 1.00490.86 C ATOM 190 C LEU 23 -43.031 -12.866 26.084 1.00490.86 C ATOM 191 O LEU 23 -43.560 -12.683 24.990 1.00490.86 O ATOM 192 N THR 24 -43.523 -12.311 27.210 1.00406.64 N ATOM 193 CA THR 24 -44.697 -11.486 27.107 1.00406.64 C ATOM 194 CB THR 24 -45.205 -10.930 28.416 1.00406.64 C ATOM 195 OG1 THR 24 -44.193 -10.202 29.097 1.00406.64 O ATOM 196 CG2 THR 24 -45.733 -12.079 29.286 1.00406.64 C ATOM 197 C THR 24 -44.372 -10.351 26.192 1.00406.64 C ATOM 198 O THR 24 -45.212 -9.938 25.393 1.00406.64 O ATOM 199 N LYS 25 -43.137 -9.821 26.278 1.00308.26 N ATOM 200 CA LYS 25 -42.717 -8.764 25.402 1.00308.26 C ATOM 201 CB LYS 25 -41.270 -8.300 25.658 1.00308.26 C ATOM 202 CG LYS 25 -41.070 -7.556 26.980 1.00308.26 C ATOM 203 CD LYS 25 -39.618 -7.142 27.240 1.00308.26 C ATOM 204 CE LYS 25 -38.674 -8.307 27.546 1.00308.26 C ATOM 205 NZ LYS 25 -37.275 -7.829 27.605 1.00308.26 N ATOM 206 C LYS 25 -42.771 -9.315 24.011 1.00308.26 C ATOM 207 O LYS 25 -43.167 -8.624 23.074 1.00308.26 O ATOM 208 N LEU 26 -42.390 -10.601 23.874 1.00389.76 N ATOM 209 CA LEU 26 -42.344 -11.365 22.658 1.00389.76 C ATOM 210 CB LEU 26 -41.610 -12.707 22.795 1.00389.76 C ATOM 211 CG LEU 26 -40.077 -12.565 22.660 1.00389.76 C ATOM 212 CD1 LEU 26 -39.672 -12.398 21.191 1.00389.76 C ATOM 213 CD2 LEU 26 -39.523 -11.395 23.482 1.00389.76 C ATOM 214 C LEU 26 -43.722 -11.564 22.106 1.00389.76 C ATOM 215 O LEU 26 -43.873 -11.993 20.963 1.00389.76 O ATOM 216 N GLY 27 -44.773 -11.347 22.919 1.00136.13 N ATOM 217 CA GLY 27 -46.098 -11.488 22.381 1.00136.13 C ATOM 218 C GLY 27 -46.494 -12.882 22.642 1.00136.13 C ATOM 219 O GLY 27 -47.492 -13.400 22.144 1.00136.13 O ATOM 220 N ALA 28 -45.655 -13.512 23.456 1.00291.45 N ATOM 221 CA ALA 28 -45.789 -14.861 23.851 1.00291.45 C ATOM 222 CB ALA 28 -44.458 -15.333 24.432 1.00291.45 C ATOM 223 C ALA 28 -46.869 -14.934 24.881 1.00291.45 C ATOM 224 O ALA 28 -47.210 -13.943 25.528 1.00291.45 O ATOM 225 N ILE 29 -47.461 -16.129 25.028 1.00245.50 N ATOM 226 CA ILE 29 -48.495 -16.326 25.991 1.00245.50 C ATOM 227 CB ILE 29 -49.623 -17.161 25.472 1.00245.50 C ATOM 228 CG2 ILE 29 -50.531 -17.542 26.649 1.00245.50 C ATOM 229 CG1 ILE 29 -50.344 -16.426 24.337 1.00245.50 C ATOM 230 CD1 ILE 29 -51.292 -17.321 23.546 1.00245.50 C ATOM 231 C ILE 29 -47.863 -17.098 27.083 1.00245.50 C ATOM 232 O ILE 29 -47.234 -18.127 26.840 1.00245.50 O ATOM 233 N TYR 30 -47.993 -16.623 28.330 1.00858.81 N ATOM 234 CA TYR 30 -47.374 -17.438 29.308 1.00858.81 C ATOM 235 CB TYR 30 -46.949 -16.697 30.580 1.00858.81 C ATOM 236 CG TYR 30 -46.320 -17.820 31.299 1.00858.81 C ATOM 237 CD1 TYR 30 -45.154 -18.326 30.791 1.00858.81 C ATOM 238 CD2 TYR 30 -46.865 -18.378 32.428 1.00858.81 C ATOM 239 CE1 TYR 30 -44.518 -19.385 31.381 1.00858.81 C ATOM 240 CE2 TYR 30 -46.230 -19.443 33.028 1.00858.81 C ATOM 241 CZ TYR 30 -45.065 -19.951 32.500 1.00858.81 C ATOM 242 OH TYR 30 -44.417 -21.041 33.118 1.00858.81 O ATOM 243 C TYR 30 -48.426 -18.424 29.675 1.00858.81 C ATOM 244 O TYR 30 -49.159 -18.250 30.648 1.00858.81 O ATOM 245 N ASP 31 -48.507 -19.491 28.854 1.00425.34 N ATOM 246 CA ASP 31 -49.441 -20.556 29.042 1.00425.34 C ATOM 247 CB ASP 31 -49.395 -21.589 27.901 1.00425.34 C ATOM 248 CG ASP 31 -50.637 -22.460 27.982 1.00425.34 C ATOM 249 OD1 ASP 31 -51.586 -22.061 28.706 1.00425.34 O ATOM 250 OD2 ASP 31 -50.658 -23.531 27.318 1.00425.34 O ATOM 251 C ASP 31 -48.965 -21.249 30.266 1.00425.34 C ATOM 252 O ASP 31 -48.250 -22.242 30.185 1.00425.34 O ATOM 253 N LYS 32 -49.400 -20.739 31.427 1.00581.66 N ATOM 254 CA LYS 32 -49.027 -21.126 32.757 1.00581.66 C ATOM 255 CB LYS 32 -49.794 -20.282 33.784 1.00581.66 C ATOM 256 CG LYS 32 -49.334 -20.400 35.231 1.00581.66 C ATOM 257 CD LYS 32 -50.029 -19.363 36.113 1.00581.66 C ATOM 258 CE LYS 32 -49.580 -19.375 37.570 1.00581.66 C ATOM 259 NZ LYS 32 -50.335 -18.357 38.331 1.00581.66 N ATOM 260 C LYS 32 -49.455 -22.534 32.960 1.00581.66 C ATOM 261 O LYS 32 -48.942 -23.259 33.810 1.00581.66 O ATOM 262 N THR 33 -50.428 -22.939 32.145 1.00315.64 N ATOM 263 CA THR 33 -51.145 -24.159 32.285 1.00315.64 C ATOM 264 CB THR 33 -52.093 -24.319 31.139 1.00315.64 C ATOM 265 OG1 THR 33 -52.912 -23.163 31.043 1.00315.64 O ATOM 266 CG2 THR 33 -52.973 -25.553 31.387 1.00315.64 C ATOM 267 C THR 33 -50.259 -25.376 32.338 1.00315.64 C ATOM 268 O THR 33 -50.475 -26.227 33.199 1.00315.64 O ATOM 269 N LYS 34 -49.246 -25.520 31.457 1.00553.81 N ATOM 270 CA LYS 34 -48.502 -26.760 31.488 1.00553.81 C ATOM 271 CB LYS 34 -48.447 -27.455 30.122 1.00553.81 C ATOM 272 CG LYS 34 -49.768 -27.894 29.504 1.00553.81 C ATOM 273 CD LYS 34 -49.574 -28.246 28.029 1.00553.81 C ATOM 274 CE LYS 34 -50.833 -28.729 27.318 1.00553.81 C ATOM 275 NZ LYS 34 -50.560 -28.868 25.870 1.00553.81 N ATOM 276 C LYS 34 -47.041 -26.577 31.800 1.00553.81 C ATOM 277 O LYS 34 -46.245 -27.446 31.454 1.00553.81 O ATOM 278 N LYS 35 -46.626 -25.510 32.496 1.00740.78 N ATOM 279 CA LYS 35 -45.230 -25.309 32.805 1.00740.78 C ATOM 280 CB LYS 35 -44.662 -26.418 33.691 1.00740.78 C ATOM 281 CG LYS 35 -45.581 -26.663 34.890 1.00740.78 C ATOM 282 CD LYS 35 -45.959 -25.383 35.639 1.00740.78 C ATOM 283 CE LYS 35 -47.226 -25.522 36.486 1.00740.78 C ATOM 284 NZ LYS 35 -47.807 -24.185 36.755 1.00740.78 N ATOM 285 C LYS 35 -44.428 -25.176 31.547 1.00740.78 C ATOM 286 O LYS 35 -43.230 -25.467 31.502 1.00740.78 O ATOM 287 N TYR 36 -45.104 -24.711 30.486 1.00718.84 N ATOM 288 CA TYR 36 -44.497 -24.381 29.238 1.00718.84 C ATOM 289 CB TYR 36 -45.134 -25.080 28.003 1.00718.84 C ATOM 290 CG TYR 36 -44.899 -26.566 28.001 1.00718.84 C ATOM 291 CD1 TYR 36 -45.651 -27.408 28.783 1.00718.84 C ATOM 292 CD2 TYR 36 -43.945 -27.136 27.189 1.00718.84 C ATOM 293 CE1 TYR 36 -45.452 -28.770 28.787 1.00718.84 C ATOM 294 CE2 TYR 36 -43.738 -28.498 27.183 1.00718.84 C ATOM 295 CZ TYR 36 -44.487 -29.322 27.987 1.00718.84 C ATOM 296 OH TYR 36 -44.279 -30.718 27.989 1.00718.84 O ATOM 297 C TYR 36 -44.785 -22.922 29.125 1.00718.84 C ATOM 298 O TYR 36 -45.923 -22.491 29.275 1.00718.84 O ATOM 299 N TRP 37 -43.743 -22.109 28.947 1.00845.26 N ATOM 300 CA TRP 37 -43.876 -20.706 28.727 1.00845.26 C ATOM 301 CB TRP 37 -42.467 -20.092 28.827 1.00845.26 C ATOM 302 CG TRP 37 -42.296 -18.628 29.113 1.00845.26 C ATOM 303 CD2 TRP 37 -43.190 -17.591 28.717 1.00845.26 C ATOM 304 CD1 TRP 37 -41.321 -18.033 29.857 1.00845.26 C ATOM 305 NE1 TRP 37 -41.538 -16.682 29.920 1.00845.26 N ATOM 306 CE2 TRP 37 -42.692 -16.403 29.232 1.00845.26 C ATOM 307 CE3 TRP 37 -44.345 -17.625 28.003 1.00845.26 C ATOM 308 CZ2 TRP 37 -43.352 -15.235 29.037 1.00845.26 C ATOM 309 CZ3 TRP 37 -44.999 -16.434 27.788 1.00845.26 C ATOM 310 CH2 TRP 37 -44.509 -15.257 28.297 1.00845.26 C ATOM 311 C TRP 37 -44.235 -20.716 27.275 1.00845.26 C ATOM 312 O TRP 37 -43.586 -21.430 26.525 1.00845.26 O ATOM 313 N VAL 38 -45.259 -20.001 26.789 1.00392.63 N ATOM 314 CA VAL 38 -45.453 -20.112 25.365 1.00392.63 C ATOM 315 CB VAL 38 -46.888 -20.238 24.947 1.00392.63 C ATOM 316 CG1 VAL 38 -46.954 -20.191 23.417 1.00392.63 C ATOM 317 CG2 VAL 38 -47.461 -21.539 25.519 1.00392.63 C ATOM 318 C VAL 38 -44.925 -18.854 24.768 1.00392.63 C ATOM 319 O VAL 38 -45.170 -17.785 25.308 1.00392.63 O ATOM 320 N TYR 39 -44.165 -18.961 23.659 1.00760.11 N ATOM 321 CA TYR 39 -43.547 -17.868 22.954 1.00760.11 C ATOM 322 CB TYR 39 -42.052 -18.190 22.729 1.00760.11 C ATOM 323 CG TYR 39 -41.383 -17.313 21.723 1.00760.11 C ATOM 324 CD1 TYR 39 -41.134 -15.987 21.974 1.00760.11 C ATOM 325 CD2 TYR 39 -40.950 -17.847 20.528 1.00760.11 C ATOM 326 CE1 TYR 39 -40.498 -15.214 21.028 1.00760.11 C ATOM 327 CE2 TYR 39 -40.312 -17.078 19.581 1.00760.11 C ATOM 328 CZ TYR 39 -40.085 -15.748 19.830 1.00760.11 C ATOM 329 OH TYR 39 -39.432 -14.941 18.872 1.00760.11 O ATOM 330 C TYR 39 -44.228 -17.752 21.628 1.00760.11 C ATOM 331 O TYR 39 -43.947 -18.518 20.710 1.00760.11 O ATOM 332 N GLN 40 -45.141 -16.770 21.494 1.00299.20 N ATOM 333 CA GLN 40 -45.853 -16.584 20.264 1.00299.20 C ATOM 334 CB GLN 40 -44.952 -16.129 19.103 1.00299.20 C ATOM 335 CG GLN 40 -44.594 -14.645 19.148 1.00299.20 C ATOM 336 CD GLN 40 -45.706 -13.892 18.429 1.00299.20 C ATOM 337 OE1 GLN 40 -46.850 -14.342 18.376 1.00299.20 O ATOM 338 NE2 GLN 40 -45.357 -12.718 17.841 1.00299.20 N ATOM 339 C GLN 40 -46.519 -17.870 19.880 1.00299.20 C ATOM 340 O GLN 40 -46.701 -18.144 18.695 1.00299.20 O ATOM 341 N GLY 41 -46.944 -18.678 20.873 1.00290.30 N ATOM 342 CA GLY 41 -47.612 -19.912 20.561 1.00290.30 C ATOM 343 C GLY 41 -46.600 -20.995 20.341 1.00290.30 C ATOM 344 O GLY 41 -46.924 -22.070 19.835 1.00290.30 O ATOM 345 N LYS 42 -45.335 -20.734 20.722 1.00352.39 N ATOM 346 CA LYS 42 -44.273 -21.679 20.532 1.00352.39 C ATOM 347 CB LYS 42 -43.134 -21.042 19.733 1.00352.39 C ATOM 348 CG LYS 42 -43.674 -20.588 18.376 1.00352.39 C ATOM 349 CD LYS 42 -42.905 -19.447 17.716 1.00352.39 C ATOM 350 CE LYS 42 -43.665 -18.847 16.529 1.00352.39 C ATOM 351 NZ LYS 42 -43.261 -17.438 16.325 1.00352.39 N ATOM 352 C LYS 42 -43.795 -22.065 21.888 1.00352.39 C ATOM 353 O LYS 42 -43.332 -21.246 22.677 1.00352.39 O ATOM 354 N PRO 43 -43.870 -23.323 22.161 1.00370.75 N ATOM 355 CA PRO 43 -43.607 -23.818 23.476 1.00370.75 C ATOM 356 CD PRO 43 -44.552 -24.278 21.305 1.00370.75 C ATOM 357 CB PRO 43 -43.948 -25.308 23.418 1.00370.75 C ATOM 358 CG PRO 43 -44.935 -25.434 22.240 1.00370.75 C ATOM 359 C PRO 43 -42.212 -23.574 23.945 1.00370.75 C ATOM 360 O PRO 43 -41.264 -23.889 23.224 1.00370.75 O ATOM 361 N VAL 44 -42.070 -23.019 25.163 1.00283.18 N ATOM 362 CA VAL 44 -40.775 -22.932 25.745 1.00283.18 C ATOM 363 CB VAL 44 -40.627 -21.911 26.812 1.00283.18 C ATOM 364 CG1 VAL 44 -39.175 -21.982 27.311 1.00283.18 C ATOM 365 CG2 VAL 44 -41.006 -20.545 26.226 1.00283.18 C ATOM 366 C VAL 44 -40.665 -24.266 26.368 1.00283.18 C ATOM 367 O VAL 44 -41.515 -24.663 27.166 1.00283.18 O ATOM 368 N MET 45 -39.602 -24.993 26.025 1.00401.70 N ATOM 369 CA MET 45 -39.602 -26.360 26.415 1.00401.70 C ATOM 370 CB MET 45 -39.372 -27.295 25.219 1.00401.70 C ATOM 371 CG MET 45 -40.617 -27.317 24.331 1.00401.70 C ATOM 372 SD MET 45 -40.445 -28.074 22.696 1.00401.70 S ATOM 373 CE MET 45 -42.212 -28.461 22.538 1.00401.70 C ATOM 374 C MET 45 -38.591 -26.622 27.460 1.00401.70 C ATOM 375 O MET 45 -37.732 -25.814 27.816 1.00401.70 O ATOM 376 N PRO 46 -38.776 -27.802 27.960 1.00414.28 N ATOM 377 CA PRO 46 -37.919 -28.335 28.965 1.00414.28 C ATOM 378 CD PRO 46 -40.116 -28.358 28.040 1.00414.28 C ATOM 379 CB PRO 46 -38.577 -29.631 29.425 1.00414.28 C ATOM 380 CG PRO 46 -40.077 -29.353 29.212 1.00414.28 C ATOM 381 C PRO 46 -36.564 -28.484 28.374 1.00414.28 C ATOM 382 O PRO 46 -36.448 -28.515 27.151 1.00414.28 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 21.86 79.4 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 16.17 88.2 34 100.0 34 ARMSMC SURFACE . . . . . . . . 21.57 76.8 56 100.0 56 ARMSMC BURIED . . . . . . . . 23.20 91.7 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.36 50.0 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 76.86 48.3 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 74.49 52.9 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 80.78 48.1 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 45.60 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 58.89 56.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 50.09 61.9 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 49.88 69.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 56.47 63.6 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 74.28 0.0 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.52 50.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 79.07 57.1 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 106.04 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 75.52 50.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 57.45 83.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 57.45 83.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 96.80 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 57.45 83.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.34 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.34 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.0670 CRMSCA SECONDARY STRUCTURE . . 1.39 17 100.0 17 CRMSCA SURFACE . . . . . . . . 2.51 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.24 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.41 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 1.42 85 100.0 85 CRMSMC SURFACE . . . . . . . . 2.57 143 100.0 143 CRMSMC BURIED . . . . . . . . 1.46 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.42 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 3.36 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 2.38 84 100.0 84 CRMSSC SURFACE . . . . . . . . 3.58 127 100.0 127 CRMSSC BURIED . . . . . . . . 2.59 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.96 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 2.00 152 100.0 152 CRMSALL SURFACE . . . . . . . . 3.11 243 100.0 243 CRMSALL BURIED . . . . . . . . 2.14 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 487.959 0.991 0.991 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 476.463 0.994 0.994 17 100.0 17 ERRCA SURFACE . . . . . . . . 477.146 0.990 0.990 29 100.0 29 ERRCA BURIED . . . . . . . . 540.225 0.995 0.995 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 491.110 0.991 0.991 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 476.442 0.994 0.994 85 100.0 85 ERRMC SURFACE . . . . . . . . 480.845 0.990 0.990 143 100.0 143 ERRMC BURIED . . . . . . . . 540.041 0.994 0.994 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 574.208 0.988 0.988 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 579.877 0.989 0.989 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 546.559 0.992 0.992 84 100.0 84 ERRSC SURFACE . . . . . . . . 546.068 0.987 0.987 127 100.0 127 ERRSC BURIED . . . . . . . . 697.441 0.993 0.993 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 533.414 0.990 0.990 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 515.202 0.993 0.993 152 100.0 152 ERRALL SURFACE . . . . . . . . 513.179 0.989 0.989 243 100.0 243 ERRALL BURIED . . . . . . . . 626.191 0.994 0.994 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 7 22 29 34 35 35 35 DISTCA CA (P) 20.00 62.86 82.86 97.14 100.00 35 DISTCA CA (RMS) 0.74 1.26 1.65 2.02 2.34 DISTCA ALL (N) 42 145 213 273 296 296 296 DISTALL ALL (P) 14.19 48.99 71.96 92.23 100.00 296 DISTALL ALL (RMS) 0.72 1.32 1.80 2.37 2.96 DISTALL END of the results output