####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS103_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS103_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 12 - 30 4.44 11.08 LONGEST_CONTINUOUS_SEGMENT: 19 17 - 35 4.97 12.07 LONGEST_CONTINUOUS_SEGMENT: 19 18 - 36 4.94 11.79 LCS_AVERAGE: 50.12 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 12 - 27 1.92 11.64 LCS_AVERAGE: 32.08 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 15 - 27 0.89 12.38 LCS_AVERAGE: 20.33 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 3 16 19 3 3 3 3 4 4 14 16 16 18 20 20 21 21 22 23 23 25 25 25 LCS_GDT F 13 F 13 4 16 19 3 4 4 11 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 25 LCS_GDT H 14 H 14 4 16 19 3 4 4 4 5 11 15 16 16 18 20 20 21 21 22 23 24 25 25 25 LCS_GDT Y 15 Y 15 13 16 19 5 8 10 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 25 LCS_GDT T 16 T 16 13 16 19 7 12 12 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 25 LCS_GDT V 17 V 17 13 16 19 8 12 12 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 25 LCS_GDT T 18 T 18 13 16 19 8 12 12 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 26 LCS_GDT D 19 D 19 13 16 19 8 12 12 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 26 LCS_GDT I 20 I 20 13 16 19 8 12 12 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 26 LCS_GDT K 21 K 21 13 16 19 8 12 12 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 26 LCS_GDT D 22 D 22 13 16 19 8 12 12 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 26 LCS_GDT L 23 L 23 13 16 19 8 12 12 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 26 LCS_GDT T 24 T 24 13 16 19 7 12 12 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 26 LCS_GDT K 25 K 25 13 16 19 8 12 12 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 26 LCS_GDT L 26 L 26 13 16 19 8 12 12 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 26 LCS_GDT G 27 G 27 13 16 19 5 12 12 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 26 LCS_GDT A 28 A 28 3 5 19 3 3 3 4 6 7 12 13 15 17 20 20 21 21 22 23 24 25 25 26 LCS_GDT I 29 I 29 3 5 19 3 3 4 4 6 7 8 10 11 14 16 17 18 19 21 22 24 24 24 26 LCS_GDT Y 30 Y 30 3 5 19 3 3 3 4 6 7 8 8 10 13 14 15 17 19 20 21 24 24 24 26 LCS_GDT D 31 D 31 3 5 19 3 3 3 4 6 7 8 8 10 13 14 15 17 18 19 21 24 24 24 26 LCS_GDT K 32 K 32 3 5 19 3 3 3 3 4 5 8 8 10 11 14 14 16 18 19 21 24 24 24 26 LCS_GDT T 33 T 33 4 6 19 3 4 4 5 5 7 11 11 12 13 14 15 17 19 20 21 24 24 24 26 LCS_GDT K 34 K 34 4 6 19 3 4 4 5 7 8 11 11 12 13 14 17 17 19 20 21 24 24 24 26 LCS_GDT K 35 K 35 4 10 19 3 4 6 8 9 10 11 11 12 13 14 17 17 19 20 21 24 24 24 26 LCS_GDT Y 36 Y 36 4 10 19 4 4 6 8 9 10 11 11 13 15 17 17 19 20 22 23 24 25 25 26 LCS_GDT W 37 W 37 4 10 14 4 4 5 5 9 10 11 12 12 16 20 20 21 21 22 23 23 25 25 26 LCS_GDT V 38 V 38 4 10 14 4 4 5 8 9 10 11 11 14 18 20 20 21 21 22 23 23 25 25 26 LCS_GDT Y 39 Y 39 5 10 14 4 4 5 8 9 10 11 11 12 12 12 13 14 18 19 20 23 24 24 26 LCS_GDT Q 40 Q 40 5 10 14 4 5 6 8 9 10 11 11 12 12 12 13 14 18 19 20 23 24 24 26 LCS_GDT G 41 G 41 5 10 14 4 5 6 8 9 10 11 11 12 12 12 13 14 18 19 20 23 25 25 26 LCS_GDT K 42 K 42 5 10 14 4 5 6 8 9 10 11 11 12 12 12 13 14 18 19 20 23 25 25 26 LCS_GDT P 43 P 43 5 10 14 4 5 6 8 9 10 11 11 12 12 13 20 21 21 22 23 23 25 25 26 LCS_GDT V 44 V 44 5 10 14 4 5 6 8 9 10 11 11 14 18 20 20 21 21 22 23 23 25 25 26 LCS_GDT M 45 M 45 0 0 14 0 0 0 0 1 1 6 6 7 10 13 13 16 18 22 23 23 25 25 25 LCS_GDT P 46 P 46 0 0 13 0 0 0 0 0 0 2 5 5 8 9 10 12 14 16 16 18 18 19 20 LCS_AVERAGE LCS_A: 34.18 ( 20.33 32.08 50.12 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 12 12 12 13 14 15 16 16 18 20 20 21 21 22 23 24 25 25 26 GDT PERCENT_AT 22.86 34.29 34.29 34.29 37.14 40.00 42.86 45.71 45.71 51.43 57.14 57.14 60.00 60.00 62.86 65.71 68.57 71.43 71.43 74.29 GDT RMS_LOCAL 0.26 0.61 0.61 0.61 0.89 1.24 1.62 1.92 1.92 2.97 3.49 3.49 3.85 3.85 4.25 4.63 5.78 5.26 5.26 6.88 GDT RMS_ALL_AT 12.40 11.90 11.90 11.90 12.38 11.99 11.85 11.64 11.64 11.29 10.88 10.88 10.79 10.79 10.53 10.44 11.50 10.92 10.92 11.88 # Checking swapping # possible swapping detected: Y 15 Y 15 # possible swapping detected: Y 30 Y 30 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 4.081 0 0.583 1.570 6.781 39.405 36.524 LGA F 13 F 13 2.607 0 0.633 0.639 4.995 47.143 53.160 LGA H 14 H 14 3.979 0 0.145 1.244 10.181 60.238 28.000 LGA Y 15 Y 15 2.933 0 0.652 0.818 8.516 57.262 26.667 LGA T 16 T 16 1.136 0 0.041 1.044 3.645 81.429 74.762 LGA V 17 V 17 1.323 0 0.103 0.148 2.419 81.429 76.599 LGA T 18 T 18 1.056 0 0.047 1.012 3.357 85.952 78.299 LGA D 19 D 19 0.652 0 0.064 0.144 1.104 88.214 88.214 LGA I 20 I 20 1.105 0 0.012 0.062 1.371 83.690 82.560 LGA K 21 K 21 1.198 0 0.052 1.107 5.639 81.429 61.111 LGA D 22 D 22 0.893 0 0.047 0.107 1.026 90.476 89.345 LGA L 23 L 23 0.794 0 0.049 1.366 3.900 90.476 77.202 LGA T 24 T 24 0.569 0 0.009 1.127 2.495 90.476 83.129 LGA K 25 K 25 1.023 0 0.130 0.948 3.027 88.214 74.550 LGA L 26 L 26 0.747 0 0.102 1.422 3.690 92.857 82.381 LGA G 27 G 27 0.732 0 0.181 0.181 3.652 70.357 70.357 LGA A 28 A 28 7.590 0 0.675 0.619 9.631 10.476 8.667 LGA I 29 I 29 11.512 0 0.111 1.165 15.467 0.357 0.179 LGA Y 30 Y 30 16.315 0 0.178 1.403 19.721 0.000 0.000 LGA D 31 D 31 20.750 0 0.567 0.787 24.690 0.000 0.000 LGA K 32 K 32 21.422 0 0.157 0.743 23.184 0.000 0.000 LGA T 33 T 33 21.780 0 0.349 0.729 25.098 0.000 0.000 LGA K 34 K 34 16.872 0 0.663 0.637 18.388 0.000 0.000 LGA K 35 K 35 16.221 0 0.596 0.447 26.452 0.000 0.000 LGA Y 36 Y 36 10.721 0 0.039 1.381 16.081 0.476 0.159 LGA W 37 W 37 8.082 0 0.077 1.370 13.397 6.190 1.769 LGA V 38 V 38 8.769 0 0.136 1.230 10.965 2.500 2.041 LGA Y 39 Y 39 15.108 0 0.651 1.128 21.751 0.000 0.000 LGA Q 40 Q 40 19.571 0 0.150 1.044 25.205 0.000 0.000 LGA G 41 G 41 17.633 0 0.022 0.022 18.465 0.000 0.000 LGA K 42 K 42 16.815 0 0.104 0.617 27.232 0.000 0.000 LGA P 43 P 43 13.248 0 0.049 0.071 17.264 0.000 0.000 LGA V 44 V 44 9.464 0 0.043 0.060 10.355 0.595 3.197 LGA M 45 M 45 13.977 0 0.058 0.851 15.774 0.000 0.000 LGA P 46 P 46 19.909 0 0.042 0.341 22.120 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 9.958 9.899 11.104 35.704 31.396 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 16 1.92 45.000 41.955 0.792 LGA_LOCAL RMSD: 1.920 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.645 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 9.958 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.136603 * X + 0.932314 * Y + -0.334857 * Z + -40.256611 Y_new = 0.373240 * X + 0.264677 * Y + 0.889178 * Z + -20.356403 Z_new = 0.917623 * X + -0.246446 * Y + -0.311822 * Z + 21.260580 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.219947 -1.162057 -2.472767 [DEG: 69.8978 -66.5810 -141.6791 ] ZXZ: -2.781427 1.887906 1.833175 [DEG: -159.3640 108.1691 105.0332 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS103_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS103_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 16 1.92 41.955 9.96 REMARK ---------------------------------------------------------- MOLECULE T0548TS103_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 87 N HIS 12 -42.292 -24.127 35.216 1.00999.00 N ATOM 88 CA HIS 12 -42.028 -25.367 34.525 1.00999.00 C ATOM 89 CB HIS 12 -43.330 -25.956 33.979 1.00999.00 C ATOM 90 CG HIS 12 -44.247 -26.480 35.039 1.00999.00 C ATOM 91 CD2 HIS 12 -44.173 -26.660 36.482 1.00999.00 C ATOM 92 ND1 HIS 12 -45.514 -26.950 34.762 1.00999.00 N ATOM 93 CE1 HIS 12 -46.094 -27.349 35.908 1.00999.00 C ATOM 94 NE2 HIS 12 -45.294 -27.177 36.945 1.00999.00 N ATOM 95 O HIS 12 -40.070 -25.921 33.256 1.00999.00 O ATOM 96 C HIS 12 -41.018 -25.148 33.406 1.00999.00 C ATOM 97 N PHE 13 -41.220 -24.095 32.620 1.00999.00 N ATOM 98 CA PHE 13 -40.315 -23.790 31.519 1.00999.00 C ATOM 99 CB PHE 13 -40.979 -23.590 30.259 1.00999.00 C ATOM 100 CG PHE 13 -41.477 -24.899 29.711 1.00999.00 C ATOM 101 CD1 PHE 13 -40.565 -25.850 29.280 1.00999.00 C ATOM 102 CD2 PHE 13 -42.785 -25.215 29.689 1.00999.00 C ATOM 103 CE1 PHE 13 -41.000 -27.058 28.825 1.00999.00 C ATOM 104 CE2 PHE 13 -43.216 -26.431 29.200 1.00999.00 C ATOM 105 CZ PHE 13 -42.322 -27.339 28.781 1.00999.00 C ATOM 106 O PHE 13 -38.357 -22.418 31.499 1.00999.00 O ATOM 107 C PHE 13 -39.507 -22.531 31.901 1.00999.00 C ATOM 108 N HIS 14 -40.140 -21.537 32.568 1.00999.00 N ATOM 109 CA HIS 14 -39.432 -20.332 32.955 1.00999.00 C ATOM 110 CB HIS 14 -40.400 -19.231 33.354 1.00999.00 C ATOM 111 CG HIS 14 -41.271 -18.768 32.231 1.00999.00 C ATOM 112 CD2 HIS 14 -42.377 -19.315 31.676 1.00999.00 C ATOM 113 ND1 HIS 14 -41.055 -17.578 31.567 1.00999.00 N ATOM 114 CE1 HIS 14 -41.986 -17.421 30.642 1.00999.00 C ATOM 115 NE2 HIS 14 -42.796 -18.462 30.682 1.00999.00 N ATOM 116 O HIS 14 -39.204 -21.535 35.018 1.00999.00 O ATOM 117 C HIS 14 -38.703 -20.725 34.235 1.00999.00 C ATOM 118 N TYR 15 -37.509 -20.178 34.432 1.00999.00 N ATOM 119 CA TYR 15 -36.714 -20.509 35.600 1.00999.00 C ATOM 120 CB TYR 15 -35.247 -20.740 35.237 1.00999.00 C ATOM 121 CG TYR 15 -35.016 -21.942 34.349 1.00999.00 C ATOM 122 CD1 TYR 15 -34.673 -21.787 33.013 1.00999.00 C ATOM 123 CD2 TYR 15 -35.143 -23.232 34.852 1.00999.00 C ATOM 124 CE1 TYR 15 -34.461 -22.880 32.194 1.00999.00 C ATOM 125 CE2 TYR 15 -34.934 -24.336 34.050 1.00999.00 C ATOM 126 CZ TYR 15 -34.591 -24.152 32.710 1.00999.00 C ATOM 127 OH TYR 15 -34.380 -25.242 31.899 1.00999.00 H ATOM 128 O TYR 15 -36.481 -19.677 37.817 1.00999.00 O ATOM 129 C TYR 15 -36.764 -19.433 36.643 1.00999.00 C ATOM 130 N THR 16 -37.156 -18.233 36.232 1.00999.00 N ATOM 131 CA THR 16 -37.280 -17.116 37.162 1.00999.00 C ATOM 132 CB THR 16 -35.926 -16.441 37.449 1.00999.00 C ATOM 133 CG2 THR 16 -35.478 -15.617 36.252 1.00999.00 C ATOM 134 OG1 THR 16 -36.049 -15.575 38.582 1.00999.00 O ATOM 135 O THR 16 -38.893 -16.272 35.571 1.00999.00 O ATOM 136 C THR 16 -38.287 -16.087 36.636 1.00999.00 C ATOM 137 N VAL 17 -38.592 -15.010 37.367 1.00999.00 N ATOM 138 CA VAL 17 -39.562 -13.964 36.950 1.00999.00 C ATOM 139 CB VAL 17 -39.808 -12.941 38.075 1.00999.00 C ATOM 140 CG1 VAL 17 -40.656 -11.784 37.569 1.00999.00 C ATOM 141 CG2 VAL 17 -40.470 -13.610 39.269 1.00999.00 C ATOM 142 O VAL 17 -39.885 -12.737 34.914 1.00999.00 O ATOM 143 C VAL 17 -39.079 -13.222 35.708 1.00999.00 C ATOM 144 N THR 18 -37.763 -13.138 35.541 1.00999.00 N ATOM 145 CA THR 18 -37.177 -12.447 34.375 1.00999.00 C ATOM 146 CB THR 18 -35.658 -12.235 34.505 1.00999.00 C ATOM 147 CG2 THR 18 -35.336 -11.448 35.765 1.00999.00 C ATOM 148 OG1 THR 18 -34.999 -13.505 34.577 1.00999.00 O ATOM 149 O THR 18 -37.840 -12.557 32.099 1.00999.00 O ATOM 150 C THR 18 -37.549 -13.170 33.127 1.00999.00 C ATOM 151 N ASP 19 -37.542 -14.498 33.199 1.00999.00 N ATOM 152 CA ASP 19 -37.890 -15.317 32.043 1.00999.00 C ATOM 153 CB ASP 19 -37.730 -16.800 32.387 1.00999.00 C ATOM 154 CG ASP 19 -36.278 -17.216 32.512 1.00999.00 C ATOM 155 OD1 ASP 19 -35.399 -16.445 32.067 1.00999.00 O ATOM 156 OD2 ASP 19 -36.017 -18.313 33.050 1.00999.00 O ATOM 157 O ASP 19 -39.540 -14.991 30.368 1.00999.00 O ATOM 158 C ASP 19 -39.318 -15.026 31.590 1.00999.00 C ATOM 159 N ILE 20 -40.105 -14.905 32.643 1.00999.00 N ATOM 160 CA ILE 20 -41.508 -14.613 32.309 1.00999.00 C ATOM 161 CB ILE 20 -42.405 -14.655 33.559 1.00999.00 C ATOM 162 CG1 ILE 20 -42.513 -16.085 34.092 1.00999.00 C ATOM 163 CG2 ILE 20 -43.770 -14.059 33.254 1.00999.00 C ATOM 164 CD1 ILE 20 -43.137 -16.180 35.468 1.00999.00 C ATOM 165 O ILE 20 -42.372 -13.121 30.641 1.00999.00 O ATOM 166 C ILE 20 -41.634 -13.256 31.617 1.00999.00 C ATOM 167 N LYS 21 -40.912 -12.240 32.103 1.00999.00 N ATOM 168 CA LYS 21 -40.977 -10.920 31.486 1.00999.00 C ATOM 169 CB LYS 21 -40.181 -9.897 32.296 1.00999.00 C ATOM 170 CG LYS 21 -40.785 -9.576 33.654 1.00999.00 C ATOM 171 CD LYS 21 -39.948 -8.551 34.403 1.00999.00 C ATOM 172 CE LYS 21 -40.565 -8.213 35.750 1.00999.00 C ATOM 173 NZ LYS 21 -39.729 -7.247 36.516 1.00999.00 N ATOM 174 O LYS 21 -41.020 -10.245 29.192 1.00999.00 O ATOM 175 C LYS 21 -40.485 -10.944 30.052 1.00999.00 C ATOM 176 N ASP 22 -39.462 -11.752 29.793 1.00999.00 N ATOM 177 CA ASP 22 -38.907 -11.860 28.448 1.00999.00 C ATOM 178 CB ASP 22 -37.673 -12.764 28.510 1.00999.00 C ATOM 179 CG ASP 22 -36.499 -12.101 29.201 1.00999.00 C ATOM 180 OD1 ASP 22 -36.539 -10.867 29.390 1.00999.00 O ATOM 181 OD2 ASP 22 -35.536 -12.815 29.552 1.00999.00 O ATOM 182 O ASP 22 -40.071 -11.981 26.363 1.00999.00 O ATOM 183 C ASP 22 -39.951 -12.442 27.493 1.00999.00 C ATOM 184 N LEU 23 -40.668 -13.448 27.993 1.00999.00 N ATOM 185 CA LEU 23 -41.798 -14.003 27.161 1.00999.00 C ATOM 186 CB LEU 23 -42.338 -15.294 27.780 1.00999.00 C ATOM 187 CG LEU 23 -43.476 -15.983 27.026 1.00999.00 C ATOM 188 CD1 LEU 23 -43.034 -16.374 25.624 1.00999.00 C ATOM 189 CD2 LEU 23 -43.962 -17.207 27.788 1.00999.00 C ATOM 190 O LEU 23 -43.420 -12.815 25.951 1.00999.00 O ATOM 191 C LEU 23 -42.873 -12.944 27.000 1.00999.00 C ATOM 192 N THR 24 -43.152 -12.144 28.066 1.00999.00 N ATOM 193 CA THR 24 -44.072 -11.030 27.874 1.00999.00 C ATOM 194 CB THR 24 -44.319 -10.332 29.223 1.00999.00 C ATOM 195 CG2 THR 24 -45.254 -9.145 29.045 1.00999.00 C ATOM 196 OG1 THR 24 -44.921 -11.255 30.139 1.00999.00 O ATOM 197 O THR 24 -44.278 -9.550 26.004 1.00999.00 O ATOM 198 C THR 24 -43.526 -10.073 26.824 1.00999.00 C ATOM 199 N LYS 25 -42.178 -9.900 26.813 1.00999.00 N ATOM 200 CA LYS 25 -41.555 -9.054 25.792 1.00999.00 C ATOM 201 CB LYS 25 -40.050 -8.945 26.039 1.00999.00 C ATOM 202 CG LYS 25 -39.683 -8.194 27.308 1.00999.00 C ATOM 203 CD LYS 25 -38.175 -8.134 27.499 1.00999.00 C ATOM 204 CE LYS 25 -37.808 -7.379 28.766 1.00999.00 C ATOM 205 NZ LYS 25 -36.337 -7.352 28.988 1.00999.00 N ATOM 206 O LYS 25 -42.258 -9.018 23.514 1.00999.00 O ATOM 207 C LYS 25 -41.896 -9.668 24.488 1.00999.00 C ATOM 208 N LEU 26 -41.748 -10.978 24.476 1.00999.00 N ATOM 209 CA LEU 26 -42.067 -11.619 23.232 1.00999.00 C ATOM 210 CB LEU 26 -41.734 -13.112 23.271 1.00999.00 C ATOM 211 CG LEU 26 -40.254 -13.473 23.421 1.00999.00 C ATOM 212 CD1 LEU 26 -40.084 -14.971 23.621 1.00999.00 C ATOM 213 CD2 LEU 26 -39.461 -13.007 22.210 1.00999.00 C ATOM 214 O LEU 26 -43.872 -11.172 21.717 1.00999.00 O ATOM 215 C LEU 26 -43.537 -11.409 22.881 1.00999.00 C ATOM 216 N GLY 27 -44.370 -11.477 23.914 1.00999.00 N ATOM 217 CA GLY 27 -45.782 -11.199 23.728 1.00999.00 C ATOM 218 O GLY 27 -47.129 -9.517 22.634 1.00999.00 O ATOM 219 C GLY 27 -46.028 -9.794 23.139 1.00999.00 C ATOM 220 N ALA 28 -45.078 -8.864 23.416 1.00999.00 N ATOM 221 CA ALA 28 -45.192 -7.423 23.004 1.00999.00 C ATOM 222 CB ALA 28 -44.419 -6.533 23.965 1.00999.00 C ATOM 223 O ALA 28 -44.727 -6.145 21.041 1.00999.00 O ATOM 224 C ALA 28 -44.693 -7.249 21.579 1.00999.00 C ATOM 225 N ILE 29 -44.260 -8.371 20.907 1.00999.00 N ATOM 226 CA ILE 29 -43.759 -8.269 19.541 1.00999.00 C ATOM 227 CB ILE 29 -42.320 -8.809 19.435 1.00999.00 C ATOM 228 CG1 ILE 29 -41.376 -7.989 20.314 1.00999.00 C ATOM 229 CG2 ILE 29 -41.867 -8.834 17.985 1.00999.00 C ATOM 230 CD1 ILE 29 -39.997 -8.593 20.463 1.00999.00 C ATOM 231 O ILE 29 -44.752 -10.231 18.677 1.00999.00 O ATOM 232 C ILE 29 -44.494 -9.045 18.498 1.00999.00 C ATOM 233 N TYR 30 -44.762 -8.416 17.360 1.00999.00 N ATOM 234 CA TYR 30 -45.496 -9.094 16.283 1.00999.00 C ATOM 235 CB TYR 30 -47.005 -8.759 16.327 1.00999.00 C ATOM 236 CG TYR 30 -47.611 -9.164 17.639 1.00999.00 C ATOM 237 CD1 TYR 30 -47.525 -8.345 18.755 1.00999.00 C ATOM 238 CD2 TYR 30 -48.176 -10.424 17.792 1.00999.00 C ATOM 239 CE1 TYR 30 -48.075 -8.744 19.993 1.00999.00 C ATOM 240 CE2 TYR 30 -48.693 -10.841 19.010 1.00999.00 C ATOM 241 CZ TYR 30 -48.629 -10.013 20.104 1.00999.00 C ATOM 242 OH TYR 30 -49.166 -10.479 21.291 1.00999.00 H ATOM 243 O TYR 30 -44.159 -7.812 14.737 1.00999.00 O ATOM 244 C TYR 30 -44.989 -8.707 14.890 1.00999.00 C ATOM 245 N ASP 31 -46.340 -8.221 14.990 1.00999.00 N ATOM 246 CA ASP 31 -46.224 -8.732 13.612 1.00999.00 C ATOM 247 CB ASP 31 -45.075 -8.062 12.872 1.00999.00 C ATOM 248 CG ASP 31 -45.358 -6.599 12.559 1.00999.00 C ATOM 249 OD1 ASP 31 -46.527 -6.172 12.676 1.00999.00 O ATOM 250 OD2 ASP 31 -44.413 -5.873 12.186 1.00999.00 O ATOM 251 O ASP 31 -46.411 -10.947 12.715 1.00999.00 O ATOM 252 C ASP 31 -46.073 -10.249 13.675 1.00999.00 C ATOM 253 N LYS 32 -45.542 -10.772 14.782 1.00999.00 N ATOM 254 CA LYS 32 -45.388 -12.214 14.938 1.00999.00 C ATOM 255 CB LYS 32 -44.658 -12.603 16.225 1.00999.00 C ATOM 256 CG LYS 32 -43.288 -11.965 16.379 1.00999.00 C ATOM 257 CD LYS 32 -42.337 -12.424 15.287 1.00999.00 C ATOM 258 CE LYS 32 -40.935 -11.883 15.512 1.00999.00 C ATOM 259 NZ LYS 32 -40.003 -12.282 14.421 1.00999.00 N ATOM 260 O LYS 32 -46.805 -14.112 14.564 1.00999.00 O ATOM 261 C LYS 32 -46.734 -12.930 14.897 1.00999.00 C ATOM 262 N THR 33 -47.800 -12.211 15.236 1.00999.00 N ATOM 263 CA THR 33 -49.151 -12.795 15.231 1.00999.00 C ATOM 264 CB THR 33 -49.723 -13.102 13.835 1.00999.00 C ATOM 265 CG2 THR 33 -49.666 -11.865 12.952 1.00999.00 C ATOM 266 OG1 THR 33 -48.954 -14.142 13.218 1.00999.00 O ATOM 267 O THR 33 -49.796 -15.048 15.743 1.00999.00 O ATOM 268 C THR 33 -49.209 -14.032 16.120 1.00999.00 C ATOM 269 N LYS 34 -48.601 -13.947 17.299 1.00999.00 N ATOM 270 CA LYS 34 -48.592 -15.087 18.252 1.00999.00 C ATOM 271 CB LYS 34 -47.477 -14.790 19.244 1.00999.00 C ATOM 272 CG LYS 34 -47.331 -15.815 20.356 1.00999.00 C ATOM 273 CD LYS 34 -46.154 -15.447 21.248 1.00999.00 C ATOM 274 CE LYS 34 -45.997 -16.423 22.398 1.00999.00 C ATOM 275 NZ LYS 34 -44.829 -16.060 23.247 1.00999.00 N ATOM 276 O LYS 34 -50.513 -14.197 19.391 1.00999.00 O ATOM 277 C LYS 34 -49.937 -15.203 18.973 1.00999.00 C ATOM 278 N LYS 35 -50.430 -16.429 19.118 1.00999.00 N ATOM 279 CA LYS 35 -51.704 -16.656 19.791 1.00999.00 C ATOM 280 CB LYS 35 -52.625 -17.427 18.846 1.00999.00 C ATOM 281 CG LYS 35 -53.018 -16.656 17.595 1.00999.00 C ATOM 282 CD LYS 35 -53.931 -17.478 16.703 1.00999.00 C ATOM 283 CE LYS 35 -54.302 -16.716 15.440 1.00999.00 C ATOM 284 NZ LYS 35 -55.208 -17.506 14.561 1.00999.00 N ATOM 285 O LYS 35 -51.096 -18.567 21.039 1.00999.00 O ATOM 286 C LYS 35 -51.525 -17.422 21.077 1.00999.00 C ATOM 287 N TYR 36 -51.558 -16.707 22.184 1.00999.00 N ATOM 288 CA TYR 36 -51.143 -17.305 23.448 1.00999.00 C ATOM 289 CB TYR 36 -49.694 -16.942 23.749 1.00999.00 C ATOM 290 CG TYR 36 -49.433 -15.449 23.868 1.00999.00 C ATOM 291 CD1 TYR 36 -49.729 -14.752 25.044 1.00999.00 C ATOM 292 CD2 TYR 36 -48.865 -14.743 22.810 1.00999.00 C ATOM 293 CE1 TYR 36 -49.453 -13.376 25.162 1.00999.00 C ATOM 294 CE2 TYR 36 -48.589 -13.370 22.916 1.00999.00 C ATOM 295 CZ TYR 36 -48.882 -12.698 24.093 1.00999.00 C ATOM 296 OH TYR 36 -48.574 -11.355 24.208 1.00999.00 H ATOM 297 O TYR 36 -52.702 -15.741 24.520 1.00999.00 O ATOM 298 C TYR 36 -52.026 -16.777 24.603 1.00999.00 C ATOM 299 N TRP 37 -52.019 -17.549 25.638 1.00999.00 N ATOM 300 CA TRP 37 -52.808 -17.257 26.851 1.00999.00 C ATOM 301 CB TRP 37 -54.298 -17.554 26.616 1.00999.00 C ATOM 302 CG TRP 37 -54.626 -19.012 26.376 1.00999.00 C ATOM 303 CD1 TRP 37 -55.178 -19.885 27.272 1.00999.00 C ATOM 304 CD2 TRP 37 -54.407 -19.760 25.171 1.00999.00 C ATOM 305 CE2 TRP 37 -54.851 -21.082 25.414 1.00999.00 C ATOM 306 CE3 TRP 37 -53.880 -19.446 23.911 1.00999.00 C ATOM 307 NE1 TRP 37 -55.317 -21.128 26.701 1.00999.00 N ATOM 308 CZ2 TRP 37 -54.782 -22.089 24.443 1.00999.00 C ATOM 309 CZ3 TRP 37 -53.809 -20.446 22.945 1.00999.00 C ATOM 310 CH2 TRP 37 -54.260 -21.754 23.220 1.00999.00 H ATOM 311 O TRP 37 -51.418 -18.962 27.789 1.00999.00 O ATOM 312 C TRP 37 -52.240 -18.076 28.004 1.00999.00 C ATOM 313 N VAL 38 -52.641 -17.776 29.233 1.00999.00 N ATOM 314 CA VAL 38 -52.167 -18.528 30.373 1.00999.00 C ATOM 315 CB VAL 38 -51.123 -17.751 31.199 1.00999.00 C ATOM 316 CG1 VAL 38 -49.898 -17.443 30.355 1.00999.00 C ATOM 317 CG2 VAL 38 -51.729 -16.471 31.755 1.00999.00 C ATOM 318 O VAL 38 -54.500 -18.390 30.932 1.00999.00 O ATOM 319 C VAL 38 -53.401 -18.879 31.197 1.00999.00 C ATOM 320 N TYR 39 -53.213 -19.888 32.053 1.00999.00 N ATOM 321 CA TYR 39 -54.263 -20.237 33.031 1.00999.00 C ATOM 322 CB TYR 39 -53.779 -21.290 34.034 1.00999.00 C ATOM 323 CG TYR 39 -53.786 -22.689 33.443 1.00999.00 C ATOM 324 CD1 TYR 39 -54.935 -23.238 32.922 1.00999.00 C ATOM 325 CD2 TYR 39 -52.618 -23.447 33.433 1.00999.00 C ATOM 326 CE1 TYR 39 -54.947 -24.518 32.372 1.00999.00 C ATOM 327 CE2 TYR 39 -52.626 -24.723 32.889 1.00999.00 C ATOM 328 CZ TYR 39 -53.780 -25.236 32.369 1.00999.00 C ATOM 329 OH TYR 39 -53.777 -26.493 31.802 1.00999.00 H ATOM 330 O TYR 39 -55.923 -18.998 34.229 1.00999.00 O ATOM 331 C TYR 39 -54.746 -19.045 33.850 1.00999.00 C ATOM 332 N GLN 40 -53.859 -18.100 34.125 1.00999.00 N ATOM 333 CA GLN 40 -54.236 -16.951 34.940 1.00999.00 C ATOM 334 CB GLN 40 -52.705 -16.464 35.555 1.00999.00 C ATOM 335 CG GLN 40 -51.869 -17.211 36.568 1.00999.00 C ATOM 336 CD GLN 40 -52.041 -16.650 37.968 1.00999.00 C ATOM 337 OE1 GLN 40 -52.999 -16.991 38.669 1.00999.00 O ATOM 338 NE2 GLN 40 -51.151 -15.737 38.362 1.00999.00 N ATOM 339 O GLN 40 -55.085 -14.735 34.615 1.00999.00 O ATOM 340 C GLN 40 -54.898 -15.857 34.118 1.00999.00 C ATOM 341 N GLY 41 -55.281 -16.175 32.886 1.00999.00 N ATOM 342 CA GLY 41 -55.940 -15.197 32.050 1.00999.00 C ATOM 343 O GLY 41 -55.431 -13.291 30.702 1.00999.00 O ATOM 344 C GLY 41 -54.992 -14.240 31.353 1.00999.00 C ATOM 345 N LYS 42 -53.692 -14.470 31.504 1.00999.00 N ATOM 346 CA LYS 42 -52.698 -13.625 30.851 1.00999.00 C ATOM 347 CB LYS 42 -51.574 -13.107 31.735 1.00999.00 C ATOM 348 CG LYS 42 -51.751 -12.953 33.228 1.00999.00 C ATOM 349 CD LYS 42 -52.777 -11.897 33.631 1.00999.00 C ATOM 350 CE LYS 42 -53.165 -11.971 35.104 1.00999.00 C ATOM 351 NZ LYS 42 -52.090 -11.361 35.952 1.00999.00 N ATOM 352 O LYS 42 -51.567 -15.429 29.760 1.00999.00 O ATOM 353 C LYS 42 -52.051 -14.306 29.656 1.00999.00 C ATOM 354 N PRO 43 -52.075 -13.620 28.511 1.00999.00 N ATOM 355 CA PRO 43 -51.498 -14.198 27.295 1.00999.00 C ATOM 356 CB PRO 43 -51.737 -13.107 26.252 1.00999.00 C ATOM 357 CG PRO 43 -52.935 -12.379 26.779 1.00999.00 C ATOM 358 CD PRO 43 -52.639 -12.291 28.251 1.00999.00 C ATOM 359 O PRO 43 -49.299 -13.548 28.006 1.00999.00 O ATOM 360 C PRO 43 -50.006 -14.439 27.529 1.00999.00 C ATOM 361 N VAL 44 -49.531 -15.632 27.194 1.00999.00 N ATOM 362 CA VAL 44 -48.123 -15.971 27.374 1.00999.00 C ATOM 363 CB VAL 44 -47.917 -16.927 28.571 1.00999.00 C ATOM 364 CG1 VAL 44 -46.449 -17.307 28.682 1.00999.00 C ATOM 365 CG2 VAL 44 -48.397 -16.268 29.862 1.00999.00 C ATOM 366 O VAL 44 -48.272 -17.498 25.556 1.00999.00 O ATOM 367 C VAL 44 -47.585 -16.656 26.123 1.00999.00 C ATOM 368 N MET 45 -47.593 -20.523 17.714 1.00999.00 N ATOM 369 CA MET 45 -46.893 -19.592 16.817 1.00999.00 C ATOM 370 CB MET 45 -45.328 -19.486 16.951 1.00999.00 C ATOM 371 CG MET 45 -44.916 -18.842 18.266 1.00999.00 C ATOM 372 SD MET 45 -43.127 -18.756 18.591 1.00999.00 S ATOM 373 CE MET 45 -42.858 -20.501 18.973 1.00999.00 C ATOM 374 O MET 45 -46.942 -21.175 15.004 1.00999.00 O ATOM 375 C MET 45 -47.066 -20.004 15.346 1.00999.00 C ATOM 376 N PRO 46 -47.459 -19.055 14.472 1.00999.00 N ATOM 377 CA PRO 46 -47.647 -19.362 13.082 1.00999.00 C ATOM 378 CB PRO 46 -48.248 -18.081 12.499 1.00999.00 C ATOM 379 CG PRO 46 -47.763 -16.997 13.400 1.00999.00 C ATOM 380 CD PRO 46 -47.691 -17.597 14.776 1.00999.00 C ATOM 381 O PRO 46 -45.254 -19.565 12.980 1.00999.00 O ATOM 382 C PRO 46 -46.338 -19.823 12.481 1.00999.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 74.53 63.2 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 55.16 79.4 34 100.0 34 ARMSMC SURFACE . . . . . . . . 72.70 64.3 56 100.0 56 ARMSMC BURIED . . . . . . . . 82.52 58.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.13 37.5 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 83.56 34.5 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 94.27 29.4 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 80.13 37.0 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 97.78 40.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 57.01 60.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 50.94 61.9 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 49.78 76.9 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 53.90 63.6 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 76.04 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 53.95 75.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 43.99 85.7 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 81.54 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 53.95 75.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.99 66.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 64.99 66.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 88.56 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 64.99 66.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.96 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.96 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2845 CRMSCA SECONDARY STRUCTURE . . 7.51 17 100.0 17 CRMSCA SURFACE . . . . . . . . 10.57 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.17 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.00 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 7.90 85 100.0 85 CRMSMC SURFACE . . . . . . . . 10.57 143 100.0 143 CRMSMC BURIED . . . . . . . . 6.61 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.21 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 12.49 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 10.66 84 100.0 84 CRMSSC SURFACE . . . . . . . . 12.54 127 100.0 127 CRMSSC BURIED . . . . . . . . 10.63 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.18 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 9.50 152 100.0 152 CRMSALL SURFACE . . . . . . . . 11.61 243 100.0 243 CRMSALL BURIED . . . . . . . . 8.95 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 990.623 0.983 0.984 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 992.981 0.988 0.988 17 100.0 17 ERRCA SURFACE . . . . . . . . 990.073 0.982 0.983 29 100.0 29 ERRCA BURIED . . . . . . . . 993.280 0.989 0.989 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 990.614 0.983 0.984 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 992.747 0.988 0.988 85 100.0 85 ERRMC SURFACE . . . . . . . . 990.115 0.982 0.983 143 100.0 143 ERRMC BURIED . . . . . . . . 992.995 0.988 0.988 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 988.541 0.979 0.980 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 988.159 0.979 0.979 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 990.136 0.982 0.983 84 100.0 84 ERRSC SURFACE . . . . . . . . 988.422 0.979 0.979 127 100.0 127 ERRSC BURIED . . . . . . . . 989.062 0.980 0.981 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 989.565 0.981 0.982 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 991.341 0.985 0.985 152 100.0 152 ERRALL SURFACE . . . . . . . . 989.259 0.981 0.981 243 100.0 243 ERRALL BURIED . . . . . . . . 990.965 0.984 0.984 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 5 13 24 35 35 DISTCA CA (P) 0.00 0.00 14.29 37.14 68.57 35 DISTCA CA (RMS) 0.00 0.00 2.55 3.47 5.59 DISTCA ALL (N) 0 2 32 91 179 296 296 DISTALL ALL (P) 0.00 0.68 10.81 30.74 60.47 296 DISTALL ALL (RMS) 0.00 1.70 2.49 3.53 5.71 DISTALL END of the results output