####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS088_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS088_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 1.40 1.40 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 1.40 1.40 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 14 - 39 0.98 1.54 LCS_AVERAGE: 65.96 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 19 35 35 3 13 21 27 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT F 13 F 13 22 35 35 3 13 25 30 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT H 14 H 14 26 35 35 3 13 24 30 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Y 15 Y 15 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT T 16 T 16 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT V 17 V 17 26 35 35 10 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT T 18 T 18 26 35 35 9 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 19 D 19 26 35 35 9 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT I 20 I 20 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 21 K 21 26 35 35 10 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 22 D 22 26 35 35 9 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 23 L 23 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT T 24 T 24 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 25 K 25 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 26 L 26 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT G 27 G 27 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT A 28 A 28 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT I 29 I 29 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Y 30 Y 30 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 31 D 31 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 32 K 32 26 35 35 8 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT T 33 T 33 26 35 35 4 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 34 K 34 26 35 35 6 20 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 35 K 35 26 35 35 5 20 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Y 36 Y 36 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT W 37 W 37 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT V 38 V 38 26 35 35 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Y 39 Y 39 26 35 35 6 14 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT Q 40 Q 40 13 35 35 5 6 17 26 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT G 41 G 41 13 35 35 5 9 22 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 42 K 42 13 35 35 10 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT P 43 P 43 13 35 35 9 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT V 44 V 44 13 35 35 4 20 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT M 45 M 45 13 35 35 6 17 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_GDT P 46 P 46 13 35 35 6 13 21 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 LCS_AVERAGE LCS_A: 88.65 ( 65.96 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 24 28 31 34 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 GDT PERCENT_AT 42.86 68.57 80.00 88.57 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.31 0.60 0.78 1.03 1.29 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 GDT RMS_ALL_AT 1.72 1.65 1.58 1.51 1.42 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 1.40 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 3.186 0 0.691 1.496 8.809 55.476 29.952 LGA F 13 F 13 1.876 0 0.117 0.514 2.451 70.833 72.208 LGA H 14 H 14 2.019 0 0.125 1.262 7.086 75.119 48.190 LGA Y 15 Y 15 0.617 0 0.209 0.703 2.025 90.476 85.437 LGA T 16 T 16 0.795 0 0.061 0.102 1.079 92.857 89.252 LGA V 17 V 17 1.248 0 0.076 0.131 2.254 81.429 75.442 LGA T 18 T 18 1.354 0 0.027 0.968 4.321 81.429 73.878 LGA D 19 D 19 0.853 0 0.036 0.075 1.566 90.476 86.012 LGA I 20 I 20 0.354 0 0.025 0.066 0.814 100.000 95.238 LGA K 21 K 21 0.617 0 0.032 1.129 6.133 90.476 66.190 LGA D 22 D 22 0.833 0 0.066 0.129 1.504 88.214 83.750 LGA L 23 L 23 0.912 0 0.131 0.167 1.321 88.214 88.214 LGA T 24 T 24 1.040 0 0.036 1.108 2.680 83.690 79.320 LGA K 25 K 25 1.449 0 0.103 0.920 1.979 81.429 78.571 LGA L 26 L 26 1.717 0 0.183 1.444 4.937 72.857 62.857 LGA G 27 G 27 1.437 0 0.055 0.055 1.482 81.429 81.429 LGA A 28 A 28 0.926 0 0.102 0.128 1.131 85.952 86.857 LGA I 29 I 29 0.429 0 0.131 1.097 3.721 95.357 80.833 LGA Y 30 Y 30 0.411 0 0.067 0.184 1.880 95.238 84.643 LGA D 31 D 31 0.793 0 0.044 0.117 0.981 90.476 90.476 LGA K 32 K 32 1.311 0 0.151 0.687 3.347 77.381 70.529 LGA T 33 T 33 1.856 0 0.106 0.669 4.022 77.143 67.891 LGA K 34 K 34 0.798 0 0.037 0.585 3.183 83.810 75.238 LGA K 35 K 35 1.927 0 0.210 0.196 7.055 79.286 52.011 LGA Y 36 Y 36 0.836 0 0.122 1.452 9.691 92.976 51.944 LGA W 37 W 37 0.205 0 0.118 0.122 0.563 97.619 99.320 LGA V 38 V 38 0.542 0 0.029 1.231 3.742 90.595 81.224 LGA Y 39 Y 39 1.426 0 0.097 0.231 3.730 79.405 66.111 LGA Q 40 Q 40 3.055 0 0.049 0.173 5.533 57.262 42.593 LGA G 41 G 41 2.273 0 0.103 0.103 2.480 73.095 73.095 LGA K 42 K 42 0.306 0 0.219 0.683 4.222 95.238 78.095 LGA P 43 P 43 0.408 0 0.070 0.153 1.036 97.619 93.265 LGA V 44 V 44 0.895 0 0.045 0.103 1.699 83.810 81.565 LGA M 45 M 45 1.152 0 0.057 0.622 3.018 83.690 73.512 LGA P 46 P 46 2.031 0 0.098 0.277 3.015 70.833 66.122 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 1.399 1.328 2.423 83.748 74.608 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 35 1.40 89.286 95.038 2.334 LGA_LOCAL RMSD: 1.399 Number of atoms: 35 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.399 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 1.399 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.259514 * X + -0.040759 * Y + 0.964879 * Z + -34.652206 Y_new = -0.881837 * X + 0.397324 * Y + 0.253963 * Z + -21.049994 Z_new = -0.393721 * X + -0.916773 * Y + 0.067169 * Z + 27.390934 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.284588 0.404676 -1.497661 [DEG: -73.6015 23.1862 -85.8096 ] ZXZ: 1.828166 1.503577 -2.735947 [DEG: 104.7462 86.1486 -156.7582 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS088_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS088_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 35 1.40 95.038 1.40 REMARK ---------------------------------------------------------- MOLECULE T0548TS088_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 87 N HIS 12 -39.720 -29.335 32.421 1.00 0.00 N ATOM 88 CA HIS 12 -38.343 -29.030 32.875 1.00 0.00 C ATOM 89 C HIS 12 -37.921 -27.524 32.686 1.00 0.00 C ATOM 90 O HIS 12 -36.816 -27.191 33.153 1.00 0.00 O ATOM 91 CB HIS 12 -37.415 -30.008 32.162 1.00 0.00 C ATOM 92 CG HIS 12 -37.639 -31.428 32.407 1.00 0.00 C ATOM 93 ND1 HIS 12 -38.465 -32.178 31.595 1.00 0.00 N ATOM 94 CD2 HIS 12 -37.192 -32.267 33.368 1.00 0.00 C ATOM 95 CE1 HIS 12 -38.513 -33.419 32.050 1.00 0.00 C ATOM 96 NE2 HIS 12 -37.749 -33.499 33.124 1.00 0.00 N ATOM 97 N PHE 13 -38.824 -26.570 32.331 1.00 0.00 N ATOM 98 CA PHE 13 -38.558 -25.125 32.149 1.00 0.00 C ATOM 99 C PHE 13 -38.631 -24.389 33.492 1.00 0.00 C ATOM 100 O PHE 13 -39.695 -24.325 34.137 1.00 0.00 O ATOM 101 CB PHE 13 -39.539 -24.570 31.124 1.00 0.00 C ATOM 102 CG PHE 13 -39.331 -25.034 29.733 1.00 0.00 C ATOM 103 CD1 PHE 13 -38.304 -25.916 29.436 1.00 0.00 C ATOM 104 CD2 PHE 13 -40.163 -24.614 28.708 1.00 0.00 C ATOM 105 CE1 PHE 13 -38.111 -26.365 28.142 1.00 0.00 C ATOM 106 CE2 PHE 13 -39.975 -25.062 27.414 1.00 0.00 C ATOM 107 CZ PHE 13 -38.946 -25.938 27.132 1.00 0.00 C ATOM 108 N HIS 14 -37.536 -23.663 33.767 1.00 0.00 N ATOM 109 CA HIS 14 -37.431 -22.879 35.020 1.00 0.00 C ATOM 110 C HIS 14 -37.923 -21.461 34.697 1.00 0.00 C ATOM 111 O HIS 14 -37.148 -20.609 34.228 1.00 0.00 O ATOM 112 CB HIS 14 -36.018 -22.869 35.615 1.00 0.00 C ATOM 113 CG HIS 14 -35.600 -24.195 36.128 1.00 0.00 C ATOM 114 ND1 HIS 14 -35.183 -25.228 35.317 1.00 0.00 N ATOM 115 CD2 HIS 14 -35.519 -24.657 37.399 1.00 0.00 C ATOM 116 CE1 HIS 14 -34.865 -26.269 36.064 1.00 0.00 C ATOM 117 NE2 HIS 14 -35.059 -25.949 37.329 1.00 0.00 N ATOM 118 N TYR 15 -39.166 -21.203 35.090 1.00 0.00 N ATOM 119 CA TYR 15 -39.810 -19.920 34.805 1.00 0.00 C ATOM 120 C TYR 15 -39.557 -18.926 35.965 1.00 0.00 C ATOM 121 O TYR 15 -40.216 -18.971 37.011 1.00 0.00 O ATOM 122 CB TYR 15 -41.309 -20.075 34.515 1.00 0.00 C ATOM 123 CG TYR 15 -41.608 -20.796 33.242 1.00 0.00 C ATOM 124 CD1 TYR 15 -41.825 -22.166 33.222 1.00 0.00 C ATOM 125 CD2 TYR 15 -41.690 -20.101 32.045 1.00 0.00 C ATOM 126 CE1 TYR 15 -42.113 -22.827 32.042 1.00 0.00 C ATOM 127 CE2 TYR 15 -41.977 -20.751 30.861 1.00 0.00 C ATOM 128 CZ TYR 15 -42.188 -22.114 30.862 1.00 0.00 C ATOM 129 OH TYR 15 -42.474 -22.766 29.685 1.00 0.00 H ATOM 130 N THR 16 -38.614 -18.012 35.706 1.00 0.00 N ATOM 131 CA THR 16 -38.230 -17.012 36.662 1.00 0.00 C ATOM 132 C THR 16 -38.863 -15.616 36.289 1.00 0.00 C ATOM 133 O THR 16 -39.360 -15.365 35.161 1.00 0.00 O ATOM 134 CB THR 16 -36.663 -16.940 36.781 1.00 0.00 C ATOM 135 OG1 THR 16 -36.086 -16.226 35.596 1.00 0.00 O ATOM 136 CG2 THR 16 -35.901 -18.266 36.916 1.00 0.00 C ATOM 137 N VAL 17 -39.165 -14.871 37.370 1.00 0.00 N ATOM 138 CA VAL 17 -39.719 -13.516 37.200 1.00 0.00 C ATOM 139 C VAL 17 -39.049 -12.687 36.049 1.00 0.00 C ATOM 140 O VAL 17 -39.814 -12.000 35.358 1.00 0.00 O ATOM 141 CB VAL 17 -39.925 -12.759 38.467 1.00 0.00 C ATOM 142 CG1 VAL 17 -40.383 -11.364 38.295 1.00 0.00 C ATOM 143 CG2 VAL 17 -40.771 -13.525 39.524 1.00 0.00 C ATOM 144 N THR 18 -37.713 -12.517 36.055 1.00 0.00 N ATOM 145 CA THR 18 -36.945 -11.859 35.001 1.00 0.00 C ATOM 146 C THR 18 -37.269 -12.559 33.637 1.00 0.00 C ATOM 147 O THR 18 -37.472 -11.832 32.665 1.00 0.00 O ATOM 148 CB THR 18 -35.430 -11.767 35.377 1.00 0.00 C ATOM 149 OG1 THR 18 -34.825 -13.017 35.746 1.00 0.00 O ATOM 150 CG2 THR 18 -35.336 -10.824 36.697 1.00 0.00 C ATOM 151 N ASP 19 -37.185 -13.903 33.559 1.00 0.00 N ATOM 152 CA ASP 19 -37.550 -14.703 32.397 1.00 0.00 C ATOM 153 C ASP 19 -38.937 -14.273 31.845 1.00 0.00 C ATOM 154 O ASP 19 -38.993 -13.922 30.664 1.00 0.00 O ATOM 155 CB ASP 19 -37.520 -16.217 32.655 1.00 0.00 C ATOM 156 CG ASP 19 -36.131 -16.778 32.836 1.00 0.00 C ATOM 157 OD1 ASP 19 -35.192 -16.146 32.411 1.00 0.00 O ATOM 158 OD2 ASP 19 -35.997 -17.767 33.515 1.00 0.00 O ATOM 159 N ILE 20 -39.994 -14.284 32.672 1.00 0.00 N ATOM 160 CA ILE 20 -41.319 -13.823 32.350 1.00 0.00 C ATOM 161 C ILE 20 -41.283 -12.347 31.829 1.00 0.00 C ATOM 162 O ILE 20 -42.036 -12.067 30.877 1.00 0.00 O ATOM 163 CB ILE 20 -42.316 -14.013 33.503 1.00 0.00 C ATOM 164 CG1 ILE 20 -42.548 -15.457 33.806 1.00 0.00 C ATOM 165 CG2 ILE 20 -43.615 -13.271 33.187 1.00 0.00 C ATOM 166 CD1 ILE 20 -43.225 -15.702 35.135 1.00 0.00 C ATOM 167 N LYS 21 -40.673 -11.353 32.538 1.00 0.00 N ATOM 168 CA LYS 21 -40.527 -9.966 32.079 1.00 0.00 C ATOM 169 C LYS 21 -39.972 -9.910 30.614 1.00 0.00 C ATOM 170 O LYS 21 -40.522 -9.096 29.820 1.00 0.00 O ATOM 171 CB LYS 21 -39.637 -9.146 33.019 1.00 0.00 C ATOM 172 CG LYS 21 -40.259 -8.839 34.335 1.00 0.00 C ATOM 173 CD LYS 21 -39.591 -7.982 35.290 1.00 0.00 C ATOM 174 CE LYS 21 -38.489 -8.646 36.046 1.00 0.00 C ATOM 175 NZ LYS 21 -37.993 -7.624 37.014 1.00 0.00 N ATOM 176 N ASP 22 -38.941 -10.692 30.222 1.00 0.00 N ATOM 177 CA ASP 22 -38.390 -10.794 28.871 1.00 0.00 C ATOM 178 C ASP 22 -39.372 -11.573 27.948 1.00 0.00 C ATOM 179 O ASP 22 -39.235 -11.389 26.721 1.00 0.00 O ATOM 180 CB ASP 22 -36.985 -11.415 28.940 1.00 0.00 C ATOM 181 CG ASP 22 -35.922 -10.548 29.501 1.00 0.00 C ATOM 182 OD1 ASP 22 -36.156 -9.375 29.660 1.00 0.00 O ATOM 183 OD2 ASP 22 -34.925 -11.078 29.935 1.00 0.00 O ATOM 184 N LEU 23 -39.908 -12.750 28.379 1.00 0.00 N ATOM 185 CA LEU 23 -40.897 -13.467 27.629 1.00 0.00 C ATOM 186 C LEU 23 -41.966 -12.469 27.081 1.00 0.00 C ATOM 187 O LEU 23 -42.590 -12.838 26.093 1.00 0.00 O ATOM 188 CB LEU 23 -41.523 -14.550 28.550 1.00 0.00 C ATOM 189 CG LEU 23 -40.664 -15.758 28.804 1.00 0.00 C ATOM 190 CD1 LEU 23 -41.330 -16.652 29.841 1.00 0.00 C ATOM 191 CD2 LEU 23 -40.420 -16.521 27.511 1.00 0.00 C ATOM 192 N THR 24 -42.502 -11.540 27.903 1.00 0.00 N ATOM 193 CA THR 24 -43.454 -10.535 27.519 1.00 0.00 C ATOM 194 C THR 24 -42.803 -9.676 26.363 1.00 0.00 C ATOM 195 O THR 24 -43.565 -9.343 25.460 1.00 0.00 O ATOM 196 CB THR 24 -44.093 -9.840 28.778 1.00 0.00 C ATOM 197 OG1 THR 24 -44.590 -10.827 29.789 1.00 0.00 O ATOM 198 CG2 THR 24 -45.114 -8.824 28.560 1.00 0.00 C ATOM 199 N LYS 25 -41.511 -9.277 26.452 1.00 0.00 N ATOM 200 CA LYS 25 -40.882 -8.576 25.320 1.00 0.00 C ATOM 201 C LYS 25 -40.937 -9.592 24.107 1.00 0.00 C ATOM 202 O LYS 25 -41.185 -9.118 22.995 1.00 0.00 O ATOM 203 CB LYS 25 -39.471 -8.143 25.612 1.00 0.00 C ATOM 204 CG LYS 25 -39.381 -7.047 26.656 1.00 0.00 C ATOM 205 CD LYS 25 -37.935 -6.665 26.930 1.00 0.00 C ATOM 206 CE LYS 25 -37.840 -5.585 27.998 1.00 0.00 C ATOM 207 NZ LYS 25 -36.429 -5.215 28.294 1.00 0.00 N ATOM 208 N LEU 26 -40.399 -10.825 24.273 1.00 0.00 N ATOM 209 CA LEU 26 -40.472 -11.871 23.279 1.00 0.00 C ATOM 210 C LEU 26 -41.882 -11.947 22.604 1.00 0.00 C ATOM 211 O LEU 26 -41.906 -11.849 21.373 1.00 0.00 O ATOM 212 CB LEU 26 -40.076 -13.193 23.935 1.00 0.00 C ATOM 213 CG LEU 26 -38.651 -13.314 24.419 1.00 0.00 C ATOM 214 CD1 LEU 26 -38.434 -14.651 25.116 1.00 0.00 C ATOM 215 CD2 LEU 26 -37.692 -13.159 23.246 1.00 0.00 C ATOM 216 N GLY 27 -42.991 -11.752 23.331 1.00 0.00 N ATOM 217 CA GLY 27 -44.357 -11.895 22.813 1.00 0.00 C ATOM 218 C GLY 27 -45.014 -13.302 23.055 1.00 0.00 C ATOM 219 O GLY 27 -46.052 -13.531 22.420 1.00 0.00 O ATOM 220 N ALA 28 -44.506 -14.181 23.966 1.00 0.00 N ATOM 221 CA ALA 28 -45.056 -15.468 24.331 1.00 0.00 C ATOM 222 C ALA 28 -46.283 -15.309 25.248 1.00 0.00 C ATOM 223 O ALA 28 -46.273 -14.520 26.205 1.00 0.00 O ATOM 224 CB ALA 28 -43.915 -16.256 24.976 1.00 0.00 C ATOM 225 N ILE 29 -47.267 -16.196 25.018 1.00 0.00 N ATOM 226 CA ILE 29 -48.496 -16.158 25.825 1.00 0.00 C ATOM 227 C ILE 29 -48.574 -17.361 26.807 1.00 0.00 C ATOM 228 O ILE 29 -48.512 -18.517 26.392 1.00 0.00 O ATOM 229 CB ILE 29 -49.713 -16.206 24.875 1.00 0.00 C ATOM 230 CG1 ILE 29 -49.645 -15.083 23.851 1.00 0.00 C ATOM 231 CG2 ILE 29 -51.007 -16.076 25.710 1.00 0.00 C ATOM 232 CD1 ILE 29 -50.646 -15.218 22.725 1.00 0.00 C ATOM 233 N TYR 30 -48.715 -17.029 28.082 1.00 0.00 N ATOM 234 CA TYR 30 -48.899 -17.967 29.188 1.00 0.00 C ATOM 235 C TYR 30 -50.242 -18.728 28.945 1.00 0.00 C ATOM 236 O TYR 30 -51.330 -18.151 29.046 1.00 0.00 O ATOM 237 CB TYR 30 -48.952 -17.159 30.489 1.00 0.00 C ATOM 238 CG TYR 30 -49.125 -18.076 31.713 1.00 0.00 C ATOM 239 CD1 TYR 30 -48.101 -18.915 32.129 1.00 0.00 C ATOM 240 CD2 TYR 30 -50.303 -18.069 32.444 1.00 0.00 C ATOM 241 CE1 TYR 30 -48.247 -19.728 33.237 1.00 0.00 C ATOM 242 CE2 TYR 30 -50.460 -18.876 33.552 1.00 0.00 C ATOM 243 CZ TYR 30 -49.430 -19.704 33.947 1.00 0.00 C ATOM 244 OH TYR 30 -49.582 -20.510 35.050 1.00 0.00 H ATOM 245 N ASP 31 -50.118 -20.060 29.035 1.00 0.00 N ATOM 246 CA ASP 31 -51.225 -20.986 28.824 1.00 0.00 C ATOM 247 C ASP 31 -51.630 -21.643 30.214 1.00 0.00 C ATOM 248 O ASP 31 -50.878 -22.466 30.760 1.00 0.00 O ATOM 249 CB ASP 31 -50.837 -22.022 27.713 1.00 0.00 C ATOM 250 CG ASP 31 -51.990 -22.995 27.442 1.00 0.00 C ATOM 251 OD1 ASP 31 -53.030 -22.898 28.051 1.00 0.00 O ATOM 252 OD2 ASP 31 -51.864 -23.714 26.479 1.00 0.00 O ATOM 253 N LYS 32 -52.707 -21.147 30.801 1.00 0.00 N ATOM 254 CA LYS 32 -53.294 -21.633 32.063 1.00 0.00 C ATOM 255 C LYS 32 -53.596 -23.182 32.077 1.00 0.00 C ATOM 256 O LYS 32 -53.562 -23.737 33.180 1.00 0.00 O ATOM 257 CB LYS 32 -54.610 -20.854 32.289 1.00 0.00 C ATOM 258 CG LYS 32 -54.427 -19.378 32.580 1.00 0.00 C ATOM 259 CD LYS 32 -55.765 -18.677 32.758 1.00 0.00 C ATOM 260 CE LYS 32 -55.578 -17.197 33.059 1.00 0.00 C ATOM 261 NZ LYS 32 -56.879 -16.494 33.216 1.00 0.00 N ATOM 262 N THR 33 -53.966 -23.834 30.944 1.00 0.00 N ATOM 263 CA THR 33 -54.223 -25.284 30.878 1.00 0.00 C ATOM 264 C THR 33 -52.990 -26.113 31.408 1.00 0.00 C ATOM 265 O THR 33 -53.247 -27.031 32.198 1.00 0.00 O ATOM 266 CB THR 33 -54.573 -25.450 29.348 1.00 0.00 C ATOM 267 OG1 THR 33 -55.725 -24.581 28.877 1.00 0.00 O ATOM 268 CG2 THR 33 -54.996 -26.875 28.934 1.00 0.00 C ATOM 269 N LYS 34 -51.751 -25.930 30.911 1.00 0.00 N ATOM 270 CA LYS 34 -50.580 -26.624 31.455 1.00 0.00 C ATOM 271 C LYS 34 -49.660 -25.739 32.382 1.00 0.00 C ATOM 272 O LYS 34 -48.833 -26.355 33.052 1.00 0.00 O ATOM 273 CB LYS 34 -49.767 -27.161 30.276 1.00 0.00 C ATOM 274 CG LYS 34 -50.480 -28.164 29.394 1.00 0.00 C ATOM 275 CD LYS 34 -49.585 -28.670 28.273 1.00 0.00 C ATOM 276 CE LYS 34 -50.332 -29.634 27.361 1.00 0.00 C ATOM 277 NZ LYS 34 -49.482 -30.110 26.238 1.00 0.00 N ATOM 278 N LYS 35 -50.057 -24.492 32.761 1.00 0.00 N ATOM 279 CA LYS 35 -49.264 -23.540 33.589 1.00 0.00 C ATOM 280 C LYS 35 -47.803 -23.387 33.063 1.00 0.00 C ATOM 281 O LYS 35 -46.873 -23.179 33.860 1.00 0.00 O ATOM 282 CB LYS 35 -49.272 -24.006 35.048 1.00 0.00 C ATOM 283 CG LYS 35 -50.642 -24.125 35.670 1.00 0.00 C ATOM 284 CD LYS 35 -50.550 -24.433 37.157 1.00 0.00 C ATOM 285 CE LYS 35 -51.930 -24.646 37.765 1.00 0.00 C ATOM 286 NZ LYS 35 -51.860 -24.885 39.232 1.00 0.00 N ATOM 287 N TYR 36 -47.647 -23.139 31.741 1.00 0.00 N ATOM 288 CA TYR 36 -46.380 -23.061 31.030 1.00 0.00 C ATOM 289 C TYR 36 -46.541 -22.164 29.763 1.00 0.00 C ATOM 290 O TYR 36 -47.431 -22.426 28.950 1.00 0.00 O ATOM 291 CB TYR 36 -45.831 -24.454 30.651 1.00 0.00 C ATOM 292 CG TYR 36 -45.548 -25.316 31.841 1.00 0.00 C ATOM 293 CD1 TYR 36 -46.283 -26.467 32.083 1.00 0.00 C ATOM 294 CD2 TYR 36 -44.524 -24.995 32.719 1.00 0.00 C ATOM 295 CE1 TYR 36 -46.009 -27.275 33.169 1.00 0.00 C ATOM 296 CE2 TYR 36 -44.239 -25.795 33.808 1.00 0.00 C ATOM 297 CZ TYR 36 -44.985 -26.934 34.032 1.00 0.00 C ATOM 298 OH TYR 36 -44.707 -27.736 35.114 1.00 0.00 H ATOM 299 N TRP 37 -45.554 -21.320 29.472 1.00 0.00 N ATOM 300 CA TRP 37 -45.532 -20.355 28.340 1.00 0.00 C ATOM 301 C TRP 37 -45.210 -21.057 26.981 1.00 0.00 C ATOM 302 O TRP 37 -44.195 -21.757 26.860 1.00 0.00 O ATOM 303 CB TRP 37 -44.415 -19.355 28.691 1.00 0.00 C ATOM 304 CG TRP 37 -44.773 -18.403 29.783 1.00 0.00 C ATOM 305 CD1 TRP 37 -44.750 -18.697 31.113 1.00 0.00 C ATOM 306 CD2 TRP 37 -45.198 -17.039 29.680 1.00 0.00 C ATOM 307 NE1 TRP 37 -45.137 -17.602 31.847 1.00 0.00 N ATOM 308 CE2 TRP 37 -45.415 -16.569 30.988 1.00 0.00 C ATOM 309 CE3 TRP 37 -45.415 -16.166 28.606 1.00 0.00 C ATOM 310 CZ2 TRP 37 -45.839 -15.277 31.253 1.00 0.00 C ATOM 311 CZ3 TRP 37 -45.839 -14.871 28.872 1.00 0.00 C ATOM 312 CH2 TRP 37 -46.043 -14.438 30.159 1.00 0.00 H ATOM 313 N VAL 38 -45.917 -20.593 25.950 1.00 0.00 N ATOM 314 CA VAL 38 -45.789 -21.055 24.584 1.00 0.00 C ATOM 315 C VAL 38 -46.231 -19.911 23.603 1.00 0.00 C ATOM 316 O VAL 38 -47.236 -19.207 23.828 1.00 0.00 O ATOM 317 CB VAL 38 -46.775 -22.242 24.439 1.00 0.00 C ATOM 318 CG1 VAL 38 -46.338 -23.408 25.292 1.00 0.00 C ATOM 319 CG2 VAL 38 -48.203 -21.871 24.657 1.00 0.00 C ATOM 320 N TYR 39 -45.616 -19.915 22.417 1.00 0.00 N ATOM 321 CA TYR 39 -45.940 -18.996 21.343 1.00 0.00 C ATOM 322 C TYR 39 -46.221 -19.783 20.063 1.00 0.00 C ATOM 323 O TYR 39 -45.330 -20.419 19.476 1.00 0.00 O ATOM 324 CB TYR 39 -44.803 -17.952 21.201 1.00 0.00 C ATOM 325 CG TYR 39 -45.113 -16.941 20.099 1.00 0.00 C ATOM 326 CD1 TYR 39 -45.904 -15.837 20.375 1.00 0.00 C ATOM 327 CD2 TYR 39 -44.593 -17.071 18.820 1.00 0.00 C ATOM 328 CE1 TYR 39 -46.173 -14.889 19.408 1.00 0.00 C ATOM 329 CE2 TYR 39 -44.856 -16.130 17.843 1.00 0.00 C ATOM 330 CZ TYR 39 -45.646 -15.040 18.140 1.00 0.00 C ATOM 331 OH TYR 39 -45.908 -14.098 17.172 1.00 0.00 H ATOM 332 N GLN 40 -47.379 -19.456 19.513 1.00 0.00 N ATOM 333 CA GLN 40 -47.910 -20.151 18.328 1.00 0.00 C ATOM 334 C GLN 40 -47.877 -21.727 18.535 1.00 0.00 C ATOM 335 O GLN 40 -47.656 -22.429 17.543 1.00 0.00 O ATOM 336 CB GLN 40 -47.196 -19.711 17.034 1.00 0.00 C ATOM 337 CG GLN 40 -47.325 -18.268 16.722 1.00 0.00 C ATOM 338 CD GLN 40 -46.653 -17.918 15.407 1.00 0.00 C ATOM 339 OE1 GLN 40 -46.196 -18.797 14.673 1.00 0.00 O ATOM 340 NE2 GLN 40 -46.585 -16.626 15.106 1.00 0.00 N ATOM 341 N GLY 41 -48.374 -22.296 19.653 1.00 0.00 N ATOM 342 CA GLY 41 -48.333 -23.717 20.003 1.00 0.00 C ATOM 343 C GLY 41 -46.889 -24.319 20.178 1.00 0.00 C ATOM 344 O GLY 41 -46.756 -25.526 19.923 1.00 0.00 O ATOM 345 N LYS 42 -45.802 -23.526 20.319 1.00 0.00 N ATOM 346 CA LYS 42 -44.459 -24.070 20.549 1.00 0.00 C ATOM 347 C LYS 42 -43.926 -23.734 21.944 1.00 0.00 C ATOM 348 O LYS 42 -43.497 -22.596 22.015 1.00 0.00 O ATOM 349 CB LYS 42 -43.573 -23.464 19.467 1.00 0.00 C ATOM 350 CG LYS 42 -43.908 -23.836 18.040 1.00 0.00 C ATOM 351 CD LYS 42 -42.922 -23.245 17.044 1.00 0.00 C ATOM 352 CE LYS 42 -43.308 -23.590 15.612 1.00 0.00 C ATOM 353 NZ LYS 42 -42.333 -23.046 14.627 1.00 0.00 N ATOM 354 N PRO 43 -43.947 -24.578 23.078 1.00 0.00 N ATOM 355 CA PRO 43 -43.452 -24.029 24.306 1.00 0.00 C ATOM 356 C PRO 43 -42.082 -23.305 24.135 1.00 0.00 C ATOM 357 O PRO 43 -41.224 -23.684 23.333 1.00 0.00 O ATOM 358 CB PRO 43 -43.408 -25.123 25.362 1.00 0.00 C ATOM 359 CG PRO 43 -44.423 -26.113 24.764 1.00 0.00 C ATOM 360 CD PRO 43 -44.189 -26.062 23.280 1.00 0.00 C ATOM 361 N VAL 44 -42.010 -22.137 24.778 1.00 0.00 N ATOM 362 CA VAL 44 -40.894 -21.207 24.799 1.00 0.00 C ATOM 363 C VAL 44 -40.026 -21.400 26.072 1.00 0.00 C ATOM 364 O VAL 44 -40.551 -21.262 27.190 1.00 0.00 O ATOM 365 CB VAL 44 -41.497 -19.807 24.811 1.00 0.00 C ATOM 366 CG1 VAL 44 -40.320 -18.759 24.754 1.00 0.00 C ATOM 367 CG2 VAL 44 -42.405 -19.558 23.632 1.00 0.00 C ATOM 368 N MET 45 -38.766 -21.794 25.912 1.00 0.00 N ATOM 369 CA MET 45 -37.880 -21.978 27.052 1.00 0.00 C ATOM 370 C MET 45 -37.565 -20.609 27.625 1.00 0.00 C ATOM 371 O MET 45 -36.797 -19.897 26.929 1.00 0.00 O ATOM 372 CB MET 45 -36.688 -22.767 26.532 1.00 0.00 C ATOM 373 CG MET 45 -35.845 -22.028 25.498 1.00 0.00 C ATOM 374 SD MET 45 -34.530 -23.058 24.820 1.00 0.00 S ATOM 375 CE MET 45 -35.408 -23.913 23.514 1.00 0.00 C ATOM 376 N PRO 46 -37.771 -20.247 28.930 1.00 0.00 N ATOM 377 CA PRO 46 -37.421 -18.888 29.347 1.00 0.00 C ATOM 378 C PRO 46 -35.940 -18.483 29.070 1.00 0.00 C ATOM 379 O PRO 46 -35.098 -19.338 29.235 1.00 0.00 O ATOM 380 CB PRO 46 -37.868 -18.646 30.805 1.00 0.00 C ATOM 381 CG PRO 46 -38.165 -20.061 31.272 1.00 0.00 C ATOM 382 CD PRO 46 -38.357 -20.956 30.095 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 25.54 88.2 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 17.12 91.2 34 100.0 34 ARMSMC SURFACE . . . . . . . . 26.59 87.5 56 100.0 56 ARMSMC BURIED . . . . . . . . 19.92 91.7 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.45 56.2 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 67.57 55.2 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 75.48 52.9 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 70.05 51.9 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 59.03 80.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 57.88 60.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 38.63 66.7 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 38.27 84.6 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 58.80 59.1 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 50.59 66.7 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.61 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 82.52 57.1 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 114.72 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 77.61 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 53.36 83.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 53.36 83.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 92.18 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 53.36 83.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.40 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.40 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.0400 CRMSCA SECONDARY STRUCTURE . . 0.98 17 100.0 17 CRMSCA SURFACE . . . . . . . . 1.50 29 100.0 29 CRMSCA BURIED . . . . . . . . 0.73 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.46 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 1.04 85 100.0 85 CRMSMC SURFACE . . . . . . . . 1.55 143 100.0 143 CRMSMC BURIED . . . . . . . . 0.92 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.15 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 2.77 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 2.71 84 100.0 84 CRMSSC SURFACE . . . . . . . . 3.44 127 100.0 127 CRMSSC BURIED . . . . . . . . 1.20 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.46 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 2.12 152 100.0 152 CRMSALL SURFACE . . . . . . . . 2.67 243 100.0 243 CRMSALL BURIED . . . . . . . . 1.06 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.197 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 0.883 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 1.303 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 0.683 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.242 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 0.949 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 1.323 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 0.856 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.460 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 2.184 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 2.037 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 2.808 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 0.939 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.846 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 1.532 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 2.056 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 0.882 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 18 30 33 35 35 35 35 DISTCA CA (P) 51.43 85.71 94.29 100.00 100.00 35 DISTCA CA (RMS) 0.68 1.09 1.22 1.40 1.40 DISTCA ALL (N) 99 213 246 274 296 296 296 DISTALL ALL (P) 33.45 71.96 83.11 92.57 100.00 296 DISTALL ALL (RMS) 0.68 1.16 1.40 1.76 2.46 DISTALL END of the results output