####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 30 ( 246), selected 30 , name T0548TS086_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 30 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS086_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 17 - 36 4.66 13.56 LCS_AVERAGE: 55.24 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 17 - 30 1.40 15.36 LONGEST_CONTINUOUS_SEGMENT: 14 18 - 31 1.99 14.94 LCS_AVERAGE: 29.43 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 17 - 28 0.98 15.19 LCS_AVERAGE: 20.86 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 30 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 17 V 17 12 14 20 3 10 12 12 13 14 15 15 16 16 16 17 18 19 19 20 20 20 21 22 LCS_GDT T 18 T 18 12 14 20 8 10 12 12 13 14 15 15 16 16 16 17 18 19 19 20 20 20 22 23 LCS_GDT D 19 D 19 12 14 20 8 10 12 12 13 14 15 15 16 16 16 17 18 19 19 20 20 20 22 23 LCS_GDT I 20 I 20 12 14 20 8 10 12 12 13 14 15 15 16 16 16 17 18 19 19 20 20 22 24 24 LCS_GDT K 21 K 21 12 14 20 8 10 12 12 13 14 15 15 16 16 16 17 18 19 19 20 20 22 24 24 LCS_GDT D 22 D 22 12 14 20 8 10 12 12 13 14 15 15 16 16 16 17 18 19 19 21 22 24 24 24 LCS_GDT L 23 L 23 12 14 20 8 10 12 12 13 14 15 15 16 16 16 17 18 19 21 23 23 24 24 24 LCS_GDT T 24 T 24 12 14 20 8 10 12 12 13 14 15 15 16 16 16 17 18 20 21 23 23 24 24 24 LCS_GDT K 25 K 25 12 14 20 8 10 12 12 13 14 15 15 16 16 16 17 18 19 21 23 23 24 24 24 LCS_GDT L 26 L 26 12 14 20 3 5 12 12 13 14 15 15 16 16 16 17 18 20 21 23 23 24 24 24 LCS_GDT G 27 G 27 12 14 20 5 10 12 12 13 14 15 15 16 16 16 17 18 20 21 23 23 24 24 24 LCS_GDT A 28 A 28 12 14 20 3 3 9 12 13 14 15 15 16 16 16 17 18 20 20 23 23 24 24 24 LCS_GDT I 29 I 29 4 14 20 3 5 12 12 13 14 14 15 16 16 16 17 18 20 21 23 23 24 24 24 LCS_GDT Y 30 Y 30 4 14 20 3 4 4 10 13 14 15 15 16 16 16 17 18 20 21 23 23 24 24 24 LCS_GDT D 31 D 31 4 14 20 3 4 4 4 4 14 15 15 16 16 16 17 18 19 20 23 23 24 24 24 LCS_GDT K 32 K 32 4 4 20 3 4 4 5 11 14 15 15 16 16 16 17 18 20 21 23 23 24 24 24 LCS_GDT T 33 T 33 3 5 20 3 3 6 6 8 9 11 12 13 15 15 16 18 20 21 23 23 24 24 24 LCS_GDT K 34 K 34 3 6 20 3 3 3 4 8 9 11 12 13 15 16 17 18 20 21 23 23 24 24 24 LCS_GDT K 35 K 35 5 7 20 3 4 5 6 7 8 9 12 13 15 16 17 18 20 21 23 23 24 24 24 LCS_GDT Y 36 Y 36 5 7 20 3 4 5 6 7 8 11 12 13 15 15 16 18 20 21 23 23 24 24 24 LCS_GDT W 37 W 37 5 7 18 3 4 5 6 7 8 9 12 13 15 15 16 18 20 21 23 23 24 24 24 LCS_GDT V 38 V 38 5 7 18 3 4 6 6 8 9 11 12 13 15 15 16 18 20 21 23 23 24 24 24 LCS_GDT Y 39 Y 39 5 7 18 3 4 6 6 8 9 11 12 13 15 15 16 18 20 21 23 23 24 24 24 LCS_GDT Q 40 Q 40 4 7 18 3 4 6 6 8 9 11 12 13 15 15 16 18 20 21 23 23 24 24 24 LCS_GDT G 41 G 41 4 7 18 3 4 6 6 8 9 11 12 13 15 15 16 18 20 21 23 23 24 24 24 LCS_GDT K 42 K 42 4 7 18 3 4 5 5 8 9 11 12 13 15 15 16 18 20 21 23 23 24 24 24 LCS_GDT P 43 P 43 4 7 18 3 4 6 6 8 9 11 12 13 15 15 16 18 20 21 23 23 24 24 24 LCS_GDT V 44 V 44 4 7 18 3 4 4 5 6 8 11 12 13 15 15 16 18 20 21 23 23 24 24 24 LCS_GDT M 45 M 45 4 7 18 3 4 5 5 6 9 11 12 13 15 15 16 18 20 21 23 23 24 24 24 LCS_GDT P 46 P 46 4 7 18 3 4 4 5 6 7 8 9 12 15 15 15 15 15 17 21 22 23 23 24 LCS_AVERAGE LCS_A: 35.17 ( 20.86 29.43 55.24 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 10 12 12 13 14 15 15 16 16 16 17 18 20 21 23 23 24 24 24 GDT PERCENT_AT 22.86 28.57 34.29 34.29 37.14 40.00 42.86 42.86 45.71 45.71 45.71 48.57 51.43 57.14 60.00 65.71 65.71 68.57 68.57 68.57 GDT RMS_LOCAL 0.38 0.57 0.81 0.81 1.09 1.40 2.04 2.04 2.25 2.25 2.25 3.80 3.94 5.04 5.36 5.67 5.67 6.07 6.07 5.94 GDT RMS_ALL_AT 15.76 15.70 15.74 15.74 15.47 15.36 14.50 14.50 14.66 14.66 14.66 13.64 13.86 10.77 10.07 10.26 10.26 9.83 9.83 10.43 # Checking swapping # possible swapping detected: D 19 D 19 # possible swapping detected: Y 30 Y 30 # possible swapping detected: D 31 D 31 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 17 V 17 2.550 0 0.613 0.849 4.581 63.690 57.279 LGA T 18 T 18 1.487 0 0.039 0.143 2.809 81.548 73.265 LGA D 19 D 19 1.551 0 0.057 0.869 2.101 79.286 81.726 LGA I 20 I 20 1.337 0 0.067 1.317 3.054 83.690 76.845 LGA K 21 K 21 0.771 0 0.063 1.059 6.637 92.857 62.222 LGA D 22 D 22 0.692 0 0.102 0.879 2.757 90.476 79.762 LGA L 23 L 23 1.122 0 0.113 1.330 3.126 83.690 77.619 LGA T 24 T 24 1.479 0 0.082 0.230 2.379 79.286 73.061 LGA K 25 K 25 1.386 0 0.079 0.820 4.218 75.476 67.037 LGA L 26 L 26 1.723 0 0.107 0.219 3.313 72.976 67.083 LGA G 27 G 27 2.281 0 0.612 0.612 4.246 60.119 60.119 LGA A 28 A 28 2.600 0 0.123 0.118 4.403 54.048 50.667 LGA I 29 I 29 4.553 0 0.543 0.919 10.545 45.357 26.131 LGA Y 30 Y 30 2.965 0 0.222 0.289 9.279 61.190 30.833 LGA D 31 D 31 2.944 0 0.593 1.045 6.285 45.595 38.750 LGA K 32 K 32 3.274 0 0.523 0.623 6.610 39.881 40.794 LGA T 33 T 33 9.436 0 0.637 0.618 13.555 3.690 2.109 LGA K 34 K 34 11.648 0 0.215 0.627 15.372 0.119 0.053 LGA K 35 K 35 13.156 0 0.727 0.618 17.938 0.000 0.000 LGA Y 36 Y 36 13.812 0 0.095 1.154 15.616 0.000 0.000 LGA W 37 W 37 13.750 0 0.047 1.106 14.644 0.000 3.980 LGA V 38 V 38 16.103 0 0.045 0.858 17.641 0.000 0.000 LGA Y 39 Y 39 18.008 0 0.450 1.231 21.329 0.000 0.000 LGA Q 40 Q 40 23.598 0 0.404 0.759 27.723 0.000 0.000 LGA G 41 G 41 24.801 0 0.672 0.672 24.801 0.000 0.000 LGA K 42 K 42 24.190 0 0.122 1.058 32.062 0.000 0.000 LGA P 43 P 43 23.617 0 0.073 0.350 24.682 0.000 0.000 LGA V 44 V 44 25.137 0 0.059 0.945 27.503 0.000 0.000 LGA M 45 M 45 30.335 0 0.630 0.917 34.232 0.000 0.000 LGA P 46 P 46 31.571 0 0.618 0.664 33.623 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 30 120 120 100.00 246 246 100.00 35 SUMMARY(RMSD_GDC): 8.774 8.534 9.305 31.799 27.695 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 30 35 4.0 15 2.04 42.857 39.212 0.701 LGA_LOCAL RMSD: 2.040 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.501 Number of assigned atoms: 30 Std_ASGN_ATOMS RMSD: 8.774 Standard rmsd on all 30 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.941772 * X + -0.336251 * Y + 0.000131 * Z + -66.436081 Y_new = -0.298355 * X + -0.835813 * Y + -0.460870 * Z + 51.008587 Z_new = 0.155078 * X + 0.433996 * Y + -0.887468 * Z + 33.412426 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.306799 -0.155706 2.686762 [DEG: -17.5783 -8.9213 153.9401 ] ZXZ: 0.000284 2.662617 0.343186 [DEG: 0.0163 152.5567 19.6631 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS086_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS086_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 30 35 4.0 15 2.04 39.212 8.77 REMARK ---------------------------------------------------------- MOLECULE T0548TS086_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 137 N VAL 17 -37.973 -10.801 37.712 1.00 99.99 N ATOM 138 CA VAL 17 -36.823 -11.456 37.069 1.00 99.99 C ATOM 139 C VAL 17 -36.892 -11.213 35.568 1.00 99.99 C ATOM 140 O VAL 17 -37.999 -11.287 35.038 1.00 99.99 O ATOM 141 CB VAL 17 -36.730 -12.957 37.331 1.00 99.99 C ATOM 142 CG1 VAL 17 -37.894 -13.866 36.950 1.00 99.99 C ATOM 143 CG2 VAL 17 -35.477 -13.629 36.777 1.00 99.99 C ATOM 144 N THR 18 -35.760 -11.095 34.871 1.00 99.99 N ATOM 145 CA THR 18 -35.803 -10.734 33.468 1.00 99.99 C ATOM 146 C THR 18 -36.460 -11.820 32.628 1.00 99.99 C ATOM 147 O THR 18 -37.248 -11.488 31.745 1.00 99.99 O ATOM 148 CB THR 18 -34.419 -10.398 32.922 1.00 99.99 C ATOM 149 OG1 THR 18 -34.092 -9.369 33.829 1.00 99.99 O ATOM 150 CG2 THR 18 -34.470 -9.881 31.486 1.00 99.99 C ATOM 151 N ASP 19 -36.102 -13.093 32.810 1.00 99.99 N ATOM 152 CA ASP 19 -36.519 -14.205 31.980 1.00 99.99 C ATOM 153 C ASP 19 -38.000 -14.092 31.647 1.00 99.99 C ATOM 154 O ASP 19 -38.344 -13.983 30.472 1.00 99.99 O ATOM 155 CB ASP 19 -36.195 -15.501 32.716 1.00 99.99 C ATOM 156 CG ASP 19 -36.525 -16.777 31.953 1.00 99.99 C ATOM 157 OD1 ASP 19 -37.602 -17.397 32.088 1.00 99.99 O ATOM 158 OD2 ASP 19 -35.718 -17.131 31.068 1.00 99.99 O ATOM 159 N ILE 20 -38.822 -14.202 32.692 1.00 99.99 N ATOM 160 CA ILE 20 -40.260 -14.086 32.553 1.00 99.99 C ATOM 161 C ILE 20 -40.829 -12.827 31.913 1.00 99.99 C ATOM 162 O ILE 20 -41.634 -12.964 30.995 1.00 99.99 O ATOM 163 CB ILE 20 -40.979 -14.358 33.872 1.00 99.99 C ATOM 164 CG1 ILE 20 -42.395 -14.865 33.615 1.00 99.99 C ATOM 165 CG2 ILE 20 -41.035 -13.192 34.855 1.00 99.99 C ATOM 166 CD1 ILE 20 -42.582 -15.956 32.565 1.00 99.99 C ATOM 167 N LYS 21 -40.373 -11.654 32.360 1.00 99.99 N ATOM 168 CA LYS 21 -40.832 -10.405 31.788 1.00 99.99 C ATOM 169 C LYS 21 -40.490 -10.125 30.332 1.00 99.99 C ATOM 170 O LYS 21 -41.301 -9.622 29.558 1.00 99.99 O ATOM 171 CB LYS 21 -40.376 -9.297 32.734 1.00 99.99 C ATOM 172 CG LYS 21 -41.290 -9.113 33.942 1.00 99.99 C ATOM 173 CD LYS 21 -40.885 -8.060 34.969 1.00 99.99 C ATOM 174 CE LYS 21 -41.829 -7.910 36.158 1.00 99.99 C ATOM 175 NZ LYS 21 -41.530 -6.832 37.113 1.00 99.99 N ATOM 176 N ASP 22 -39.274 -10.473 29.904 1.00 99.99 N ATOM 177 CA ASP 22 -38.771 -10.444 28.546 1.00 99.99 C ATOM 178 C ASP 22 -39.546 -11.353 27.604 1.00 99.99 C ATOM 179 O ASP 22 -40.032 -10.924 26.559 1.00 99.99 O ATOM 180 CB ASP 22 -37.291 -10.813 28.501 1.00 99.99 C ATOM 181 CG ASP 22 -36.717 -10.436 27.144 1.00 99.99 C ATOM 182 OD1 ASP 22 -36.688 -9.240 26.782 1.00 99.99 O ATOM 183 OD2 ASP 22 -36.102 -11.247 26.419 1.00 99.99 O ATOM 184 N LEU 23 -39.781 -12.609 27.990 1.00 99.99 N ATOM 185 CA LEU 23 -40.674 -13.536 27.325 1.00 99.99 C ATOM 186 C LEU 23 -42.046 -12.896 27.168 1.00 99.99 C ATOM 187 O LEU 23 -42.408 -12.630 26.024 1.00 99.99 O ATOM 188 CB LEU 23 -40.670 -14.858 28.087 1.00 99.99 C ATOM 189 CG LEU 23 -41.593 -15.894 27.455 1.00 99.99 C ATOM 190 CD1 LEU 23 -41.078 -16.464 26.137 1.00 99.99 C ATOM 191 CD2 LEU 23 -41.801 -17.080 28.393 1.00 99.99 C ATOM 192 N THR 24 -42.722 -12.575 28.273 1.00 99.99 N ATOM 193 CA THR 24 -44.042 -11.981 28.206 1.00 99.99 C ATOM 194 C THR 24 -44.223 -10.665 27.463 1.00 99.99 C ATOM 195 O THR 24 -45.285 -10.417 26.897 1.00 99.99 O ATOM 196 CB THR 24 -44.709 -11.894 29.575 1.00 99.99 C ATOM 197 OG1 THR 24 -43.895 -11.335 30.581 1.00 99.99 O ATOM 198 CG2 THR 24 -45.163 -13.225 30.171 1.00 99.99 C ATOM 199 N LYS 25 -43.169 -9.845 27.496 1.00 99.99 N ATOM 200 CA LYS 25 -43.191 -8.581 26.788 1.00 99.99 C ATOM 201 C LYS 25 -43.527 -8.778 25.317 1.00 99.99 C ATOM 202 O LYS 25 -44.182 -7.868 24.812 1.00 99.99 O ATOM 203 CB LYS 25 -41.821 -7.918 26.879 1.00 99.99 C ATOM 204 CG LYS 25 -41.817 -6.778 27.893 1.00 99.99 C ATOM 205 CD LYS 25 -40.431 -6.302 28.321 1.00 99.99 C ATOM 206 CE LYS 25 -40.423 -5.142 29.312 1.00 99.99 C ATOM 207 NZ LYS 25 -39.178 -4.525 29.792 1.00 99.99 N ATOM 208 N LEU 26 -43.175 -9.912 24.708 1.00 99.99 N ATOM 209 CA LEU 26 -43.497 -10.290 23.348 1.00 99.99 C ATOM 210 C LEU 26 -44.653 -11.276 23.251 1.00 99.99 C ATOM 211 O LEU 26 -45.530 -11.148 22.400 1.00 99.99 O ATOM 212 CB LEU 26 -42.202 -10.802 22.723 1.00 99.99 C ATOM 213 CG LEU 26 -42.250 -11.521 21.379 1.00 99.99 C ATOM 214 CD1 LEU 26 -42.998 -10.621 20.400 1.00 99.99 C ATOM 215 CD2 LEU 26 -40.841 -11.975 21.005 1.00 99.99 C ATOM 216 N GLY 27 -44.593 -12.413 23.950 1.00 99.99 N ATOM 217 CA GLY 27 -45.694 -13.354 23.999 1.00 99.99 C ATOM 218 C GLY 27 -45.793 -14.446 25.055 1.00 99.99 C ATOM 219 O GLY 27 -45.295 -14.339 26.173 1.00 99.99 O ATOM 220 N ALA 28 -46.850 -15.242 24.882 1.00 99.99 N ATOM 221 CA ALA 28 -47.286 -16.142 25.931 1.00 99.99 C ATOM 222 C ALA 28 -46.390 -17.340 26.215 1.00 99.99 C ATOM 223 O ALA 28 -45.939 -18.012 25.291 1.00 99.99 O ATOM 224 CB ALA 28 -48.760 -16.515 25.804 1.00 99.99 C ATOM 225 N ILE 29 -46.123 -17.602 27.497 1.00 99.99 N ATOM 226 CA ILE 29 -45.369 -18.730 28.005 1.00 99.99 C ATOM 227 C ILE 29 -46.165 -20.002 27.751 1.00 99.99 C ATOM 228 O ILE 29 -45.774 -20.995 27.141 1.00 99.99 O ATOM 229 CB ILE 29 -44.822 -18.644 29.427 1.00 99.99 C ATOM 230 CG1 ILE 29 -44.103 -19.934 29.814 1.00 99.99 C ATOM 231 CG2 ILE 29 -45.879 -18.203 30.434 1.00 99.99 C ATOM 232 CD1 ILE 29 -43.255 -19.798 31.075 1.00 99.99 C ATOM 233 N TYR 30 -47.386 -20.008 28.289 1.00 99.99 N ATOM 234 CA TYR 30 -48.532 -20.838 27.977 1.00 99.99 C ATOM 235 C TYR 30 -49.787 -19.975 27.963 1.00 99.99 C ATOM 236 O TYR 30 -49.685 -18.773 28.197 1.00 99.99 O ATOM 237 CB TYR 30 -48.571 -21.979 28.990 1.00 99.99 C ATOM 238 CG TYR 30 -49.656 -23.025 28.905 1.00 99.99 C ATOM 239 CD1 TYR 30 -50.646 -23.161 29.887 1.00 99.99 C ATOM 240 CD2 TYR 30 -49.780 -23.779 27.731 1.00 99.99 C ATOM 241 CE1 TYR 30 -51.756 -23.993 29.700 1.00 99.99 C ATOM 242 CE2 TYR 30 -50.889 -24.609 27.525 1.00 99.99 C ATOM 243 CZ TYR 30 -51.918 -24.687 28.485 1.00 99.99 C ATOM 244 OH TYR 30 -53.047 -25.431 28.308 1.00 99.99 H ATOM 245 N ASP 31 -50.974 -20.489 27.635 1.00 99.99 N ATOM 246 CA ASP 31 -52.134 -19.653 27.390 1.00 99.99 C ATOM 247 C ASP 31 -52.470 -18.835 28.629 1.00 99.99 C ATOM 248 O ASP 31 -52.675 -17.635 28.459 1.00 99.99 O ATOM 249 CB ASP 31 -53.264 -20.580 26.953 1.00 99.99 C ATOM 250 CG ASP 31 -54.538 -19.826 26.594 1.00 99.99 C ATOM 251 OD1 ASP 31 -54.589 -19.163 25.537 1.00 99.99 O ATOM 252 OD2 ASP 31 -55.492 -19.768 27.400 1.00 99.99 O ATOM 253 N LYS 32 -52.607 -19.487 29.785 1.00 99.99 N ATOM 254 CA LYS 32 -52.935 -18.944 31.088 1.00 99.99 C ATOM 255 C LYS 32 -51.695 -18.289 31.679 1.00 99.99 C ATOM 256 O LYS 32 -51.279 -18.695 32.761 1.00 99.99 O ATOM 257 CB LYS 32 -53.450 -20.052 32.002 1.00 99.99 C ATOM 258 CG LYS 32 -54.803 -20.657 31.639 1.00 99.99 C ATOM 259 CD LYS 32 -55.942 -19.707 31.285 1.00 99.99 C ATOM 260 CE LYS 32 -57.184 -20.559 31.039 1.00 99.99 C ATOM 261 NZ LYS 32 -58.141 -19.880 30.151 1.00 99.99 N ATOM 262 N THR 33 -51.102 -17.268 31.058 1.00 99.99 N ATOM 263 CA THR 33 -50.038 -16.460 31.621 1.00 99.99 C ATOM 264 C THR 33 -50.677 -15.591 32.696 1.00 99.99 C ATOM 265 O THR 33 -51.485 -14.730 32.354 1.00 99.99 O ATOM 266 CB THR 33 -49.307 -15.650 30.555 1.00 99.99 C ATOM 267 OG1 THR 33 -48.639 -16.526 29.676 1.00 99.99 O ATOM 268 CG2 THR 33 -48.225 -14.920 31.346 1.00 99.99 C ATOM 269 N LYS 34 -50.392 -15.941 33.952 1.00 99.99 N ATOM 270 CA LYS 34 -51.065 -15.486 35.153 1.00 99.99 C ATOM 271 C LYS 34 -51.016 -13.988 35.411 1.00 99.99 C ATOM 272 O LYS 34 -52.051 -13.341 35.555 1.00 99.99 O ATOM 273 CB LYS 34 -50.529 -16.275 36.343 1.00 99.99 C ATOM 274 CG LYS 34 -50.823 -17.765 36.200 1.00 99.99 C ATOM 275 CD LYS 34 -50.303 -18.558 37.396 1.00 99.99 C ATOM 276 CE LYS 34 -50.561 -20.053 37.226 1.00 99.99 C ATOM 277 NZ LYS 34 -50.076 -20.743 38.431 1.00 99.99 N ATOM 278 N LYS 35 -49.818 -13.397 35.410 1.00 99.99 N ATOM 279 CA LYS 35 -49.499 -11.987 35.504 1.00 99.99 C ATOM 280 C LYS 35 -48.899 -11.576 34.166 1.00 99.99 C ATOM 281 O LYS 35 -48.333 -12.444 33.504 1.00 99.99 O ATOM 282 CB LYS 35 -48.538 -11.804 36.674 1.00 99.99 C ATOM 283 CG LYS 35 -49.071 -12.064 38.080 1.00 99.99 C ATOM 284 CD LYS 35 -47.911 -12.406 39.010 1.00 99.99 C ATOM 285 CE LYS 35 -48.160 -12.680 40.490 1.00 99.99 C ATOM 286 NZ LYS 35 -46.877 -12.932 41.164 1.00 99.99 N ATOM 287 N TYR 36 -49.092 -10.314 33.776 1.00 99.99 N ATOM 288 CA TYR 36 -48.623 -9.885 32.474 1.00 99.99 C ATOM 289 C TYR 36 -48.057 -8.473 32.414 1.00 99.99 C ATOM 290 O TYR 36 -48.737 -7.616 32.971 1.00 99.99 O ATOM 291 CB TYR 36 -49.807 -9.979 31.515 1.00 99.99 C ATOM 292 CG TYR 36 -49.331 -10.360 30.134 1.00 99.99 C ATOM 293 CD1 TYR 36 -48.718 -9.428 29.288 1.00 99.99 C ATOM 294 CD2 TYR 36 -49.373 -11.726 29.832 1.00 99.99 C ATOM 295 CE1 TYR 36 -48.120 -9.894 28.112 1.00 99.99 C ATOM 296 CE2 TYR 36 -48.719 -12.218 28.695 1.00 99.99 C ATOM 297 CZ TYR 36 -48.077 -11.281 27.862 1.00 99.99 C ATOM 298 OH TYR 36 -47.456 -11.730 26.735 1.00 99.99 H ATOM 299 N TRP 37 -47.015 -8.198 31.626 1.00 99.99 N ATOM 300 CA TRP 37 -46.282 -6.949 31.574 1.00 99.99 C ATOM 301 C TRP 37 -45.854 -6.573 30.162 1.00 99.99 C ATOM 302 O TRP 37 -45.457 -7.483 29.438 1.00 99.99 O ATOM 303 CB TRP 37 -45.035 -7.116 32.437 1.00 99.99 C ATOM 304 CG TRP 37 -45.189 -7.702 33.805 1.00 99.99 C ATOM 305 CD1 TRP 37 -45.430 -6.983 34.925 1.00 99.99 C ATOM 306 CD2 TRP 37 -45.253 -9.100 34.218 1.00 99.99 C ATOM 307 NE1 TRP 37 -45.478 -7.827 36.017 1.00 99.99 N ATOM 308 CE2 TRP 37 -45.343 -9.146 35.633 1.00 99.99 C ATOM 309 CE3 TRP 37 -45.162 -10.334 33.556 1.00 99.99 C ATOM 310 CZ2 TRP 37 -45.198 -10.351 36.330 1.00 99.99 C ATOM 311 CZ3 TRP 37 -45.214 -11.547 34.255 1.00 99.99 C ATOM 312 CH2 TRP 37 -45.169 -11.577 35.654 1.00 99.99 H ATOM 313 N VAL 38 -45.858 -5.302 29.751 1.00 99.99 N ATOM 314 CA VAL 38 -45.586 -4.969 28.368 1.00 99.99 C ATOM 315 C VAL 38 -45.151 -3.510 28.354 1.00 99.99 C ATOM 316 O VAL 38 -45.810 -2.661 28.949 1.00 99.99 O ATOM 317 CB VAL 38 -46.751 -5.287 27.436 1.00 99.99 C ATOM 318 CG1 VAL 38 -47.948 -4.364 27.649 1.00 99.99 C ATOM 319 CG2 VAL 38 -46.340 -5.261 25.966 1.00 99.99 C ATOM 320 N TYR 39 -44.107 -3.049 27.662 1.00 99.99 N ATOM 321 CA TYR 39 -43.541 -1.716 27.629 1.00 99.99 C ATOM 322 C TYR 39 -43.296 -1.113 29.005 1.00 99.99 C ATOM 323 O TYR 39 -42.246 -1.292 29.618 1.00 99.99 O ATOM 324 CB TYR 39 -44.252 -0.957 26.512 1.00 99.99 C ATOM 325 CG TYR 39 -44.080 0.542 26.553 1.00 99.99 C ATOM 326 CD1 TYR 39 -45.215 1.356 26.656 1.00 99.99 C ATOM 327 CD2 TYR 39 -42.805 1.021 26.231 1.00 99.99 C ATOM 328 CE1 TYR 39 -45.046 2.736 26.482 1.00 99.99 C ATOM 329 CE2 TYR 39 -42.633 2.410 26.209 1.00 99.99 C ATOM 330 CZ TYR 39 -43.746 3.262 26.339 1.00 99.99 C ATOM 331 OH TYR 39 -43.570 4.612 26.263 1.00 99.99 H ATOM 332 N GLN 40 -44.291 -0.400 29.538 1.00 99.99 N ATOM 333 CA GLN 40 -44.235 0.438 30.719 1.00 99.99 C ATOM 334 C GLN 40 -44.216 -0.425 31.972 1.00 99.99 C ATOM 335 O GLN 40 -43.455 -0.132 32.892 1.00 99.99 O ATOM 336 CB GLN 40 -45.433 1.378 30.810 1.00 99.99 C ATOM 337 CG GLN 40 -45.348 2.565 29.854 1.00 99.99 C ATOM 338 CD GLN 40 -46.367 3.655 30.152 1.00 99.99 C ATOM 339 OE1 GLN 40 -46.086 4.668 30.789 1.00 99.99 O ATOM 340 NE2 GLN 40 -47.614 3.588 29.680 1.00 99.99 N ATOM 341 N GLY 41 -45.087 -1.437 31.989 1.00 99.99 N ATOM 342 CA GLY 41 -45.350 -2.332 33.097 1.00 99.99 C ATOM 343 C GLY 41 -46.588 -3.193 32.890 1.00 99.99 C ATOM 344 O GLY 41 -46.942 -3.515 31.758 1.00 99.99 O ATOM 345 N LYS 42 -47.303 -3.445 33.989 1.00 99.99 N ATOM 346 CA LYS 42 -48.563 -4.150 33.850 1.00 99.99 C ATOM 347 C LYS 42 -49.603 -3.350 33.079 1.00 99.99 C ATOM 348 O LYS 42 -49.890 -2.240 33.523 1.00 99.99 O ATOM 349 CB LYS 42 -48.949 -4.402 35.304 1.00 99.99 C ATOM 350 CG LYS 42 -50.327 -5.000 35.577 1.00 99.99 C ATOM 351 CD LYS 42 -50.471 -5.700 36.925 1.00 99.99 C ATOM 352 CE LYS 42 -51.938 -5.834 37.323 1.00 99.99 C ATOM 353 NZ LYS 42 -52.131 -6.539 38.599 1.00 99.99 N ATOM 354 N PRO 43 -50.255 -3.884 32.044 1.00 99.99 N ATOM 355 CA PRO 43 -51.250 -3.164 31.275 1.00 99.99 C ATOM 356 C PRO 43 -52.559 -3.174 32.051 1.00 99.99 C ATOM 357 O PRO 43 -53.079 -4.159 32.570 1.00 99.99 O ATOM 358 CB PRO 43 -51.362 -3.941 29.968 1.00 99.99 C ATOM 359 CG PRO 43 -51.096 -5.362 30.455 1.00 99.99 C ATOM 360 CD PRO 43 -49.988 -5.198 31.492 1.00 99.99 C ATOM 361 N VAL 44 -53.170 -1.987 32.010 1.00 99.99 N ATOM 362 CA VAL 44 -54.539 -1.902 32.473 1.00 99.99 C ATOM 363 C VAL 44 -55.345 -0.925 31.629 1.00 99.99 C ATOM 364 O VAL 44 -54.780 0.117 31.304 1.00 99.99 O ATOM 365 CB VAL 44 -54.654 -1.568 33.959 1.00 99.99 C ATOM 366 CG1 VAL 44 -54.166 -0.181 34.364 1.00 99.99 C ATOM 367 CG2 VAL 44 -55.962 -1.933 34.656 1.00 99.99 C ATOM 368 N MET 45 -56.629 -1.240 31.445 1.00 99.99 N ATOM 369 CA MET 45 -57.527 -0.499 30.583 1.00 99.99 C ATOM 370 C MET 45 -57.566 1.021 30.535 1.00 99.99 C ATOM 371 O MET 45 -57.528 1.528 29.416 1.00 99.99 O ATOM 372 CB MET 45 -58.918 -1.125 30.624 1.00 99.99 C ATOM 373 CG MET 45 -59.700 -0.847 29.343 1.00 99.99 C ATOM 374 SD MET 45 -59.103 -1.832 27.947 1.00 99.99 S ATOM 375 CE MET 45 -59.411 -3.591 28.243 1.00 99.99 C ATOM 376 N PRO 46 -57.537 1.771 31.639 1.00 99.99 N ATOM 377 CA PRO 46 -57.078 3.143 31.714 1.00 99.99 C ATOM 378 C PRO 46 -55.998 3.584 30.737 1.00 99.99 C ATOM 379 O PRO 46 -56.055 4.716 30.261 1.00 99.99 O ATOM 380 CB PRO 46 -56.610 3.355 33.151 1.00 99.99 C ATOM 381 CG PRO 46 -57.664 2.543 33.897 1.00 99.99 C ATOM 382 CD PRO 46 -57.956 1.368 32.967 1.00 99.99 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 246 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 78.22 53.4 58 85.3 68 ARMSMC SECONDARY STRUCTURE . . 64.08 66.7 33 97.1 34 ARMSMC SURFACE . . . . . . . . 84.77 50.0 48 85.7 56 ARMSMC BURIED . . . . . . . . 31.45 70.0 10 83.3 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.43 48.1 27 84.4 32 ARMSSC1 RELIABLE SIDE CHAINS . 71.46 54.2 24 82.8 29 ARMSSC1 SECONDARY STRUCTURE . . 80.01 47.1 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 72.98 52.2 23 85.2 27 ARMSSC1 BURIED . . . . . . . . 88.20 25.0 4 80.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.26 47.6 21 84.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 76.08 47.4 19 90.5 21 ARMSSC2 SECONDARY STRUCTURE . . 73.42 53.8 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 66.29 52.6 19 86.4 22 ARMSSC2 BURIED . . . . . . . . 133.13 0.0 2 66.7 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.77 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 64.62 71.4 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 80.84 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 72.77 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 54.90 83.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 54.90 83.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 93.46 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 54.90 83.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.77 (Number of atoms: 30) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.77 30 85.7 35 CRMSCA CRN = ALL/NP . . . . . 0.2925 CRMSCA SECONDARY STRUCTURE . . 8.89 17 100.0 17 CRMSCA SURFACE . . . . . . . . 9.03 25 86.2 29 CRMSCA BURIED . . . . . . . . 7.38 5 83.3 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.74 148 85.5 173 CRMSMC SECONDARY STRUCTURE . . 8.86 85 100.0 85 CRMSMC SURFACE . . . . . . . . 8.94 123 86.0 143 CRMSMC BURIED . . . . . . . . 7.66 25 83.3 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.10 126 80.8 156 CRMSSC RELIABLE SIDE CHAINS . 9.94 114 83.8 136 CRMSSC SECONDARY STRUCTURE . . 10.01 84 100.0 84 CRMSSC SURFACE . . . . . . . . 10.45 105 82.7 127 CRMSSC BURIED . . . . . . . . 8.13 21 72.4 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.38 246 83.1 296 CRMSALL SECONDARY STRUCTURE . . 9.43 152 100.0 152 CRMSALL SURFACE . . . . . . . . 9.67 205 84.4 243 CRMSALL BURIED . . . . . . . . 7.81 41 77.4 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.026 0.855 0.866 30 85.7 35 ERRCA SECONDARY STRUCTURE . . 91.806 0.851 0.862 17 100.0 17 ERRCA SURFACE . . . . . . . . 91.815 0.851 0.863 25 86.2 29 ERRCA BURIED . . . . . . . . 93.081 0.872 0.880 5 83.3 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.061 0.855 0.866 148 85.5 173 ERRMC SECONDARY STRUCTURE . . 91.865 0.852 0.863 85 100.0 85 ERRMC SURFACE . . . . . . . . 91.906 0.853 0.864 123 86.0 143 ERRMC BURIED . . . . . . . . 92.822 0.867 0.877 25 83.3 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 90.590 0.830 0.845 126 80.8 156 ERRSC RELIABLE SIDE CHAINS . 90.762 0.833 0.847 114 83.8 136 ERRSC SECONDARY STRUCTURE . . 90.620 0.831 0.845 84 100.0 84 ERRSC SURFACE . . . . . . . . 90.263 0.825 0.840 105 82.7 127 ERRSC BURIED . . . . . . . . 92.228 0.857 0.867 21 72.4 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.385 0.844 0.857 246 83.1 296 ERRALL SECONDARY STRUCTURE . . 91.258 0.841 0.854 152 100.0 152 ERRALL SURFACE . . . . . . . . 91.139 0.840 0.853 205 84.4 243 ERRALL BURIED . . . . . . . . 92.614 0.864 0.873 41 77.4 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 4 6 23 30 35 DISTCA CA (P) 0.00 0.00 11.43 17.14 65.71 35 DISTCA CA (RMS) 0.00 0.00 2.72 3.39 6.71 DISTCA ALL (N) 0 1 13 44 171 246 296 DISTALL ALL (P) 0.00 0.34 4.39 14.86 57.77 296 DISTALL ALL (RMS) 0.00 1.75 2.66 3.83 6.92 DISTALL END of the results output