####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS077_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS077_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 12 - 33 4.81 10.26 LCS_AVERAGE: 60.73 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 34 - 46 1.73 13.77 LCS_AVERAGE: 24.08 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 26 - 31 1.00 14.26 LONGEST_CONTINUOUS_SEGMENT: 6 35 - 40 0.80 14.73 LONGEST_CONTINUOUS_SEGMENT: 6 41 - 46 0.56 14.68 LCS_AVERAGE: 14.29 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 5 5 22 4 4 4 5 6 7 8 9 13 14 17 20 21 21 22 22 23 25 27 30 LCS_GDT F 13 F 13 5 5 22 4 4 4 5 6 7 8 10 13 14 17 20 21 22 26 28 30 31 31 31 LCS_GDT H 14 H 14 5 5 22 4 4 4 5 6 7 8 10 13 14 17 20 21 25 26 28 30 31 31 31 LCS_GDT Y 15 Y 15 5 5 22 4 4 4 5 6 6 7 8 12 14 17 21 23 25 26 28 30 31 31 31 LCS_GDT T 16 T 16 5 5 22 3 3 4 5 6 7 8 10 13 14 17 21 23 25 26 28 30 31 31 31 LCS_GDT V 17 V 17 4 5 22 3 3 4 4 5 7 8 10 13 14 17 21 23 25 26 28 30 31 31 31 LCS_GDT T 18 T 18 4 5 22 3 3 5 6 9 10 10 11 13 14 17 21 23 25 26 28 30 31 31 31 LCS_GDT D 19 D 19 3 5 22 3 3 3 4 5 8 10 12 13 14 17 21 23 25 26 28 30 31 31 31 LCS_GDT I 20 I 20 3 5 22 3 3 3 4 5 8 10 12 13 14 17 21 23 25 26 28 30 31 31 31 LCS_GDT K 21 K 21 3 5 22 3 3 3 4 5 8 10 12 13 14 17 21 23 25 26 28 30 31 31 31 LCS_GDT D 22 D 22 3 4 22 3 3 3 4 4 6 11 11 12 14 17 20 21 22 26 28 30 31 31 31 LCS_GDT L 23 L 23 4 6 22 3 3 4 4 5 6 11 11 13 14 17 20 21 22 24 26 30 31 31 31 LCS_GDT T 24 T 24 4 6 22 3 3 4 4 5 6 7 7 11 12 16 18 21 22 24 26 30 31 31 31 LCS_GDT K 25 K 25 4 7 22 3 3 4 5 5 8 11 12 13 14 17 20 23 25 26 28 30 31 31 31 LCS_GDT L 26 L 26 6 7 22 3 5 6 6 7 8 11 12 13 14 17 21 23 25 26 28 30 31 31 31 LCS_GDT G 27 G 27 6 7 22 3 5 6 6 7 8 11 12 13 14 17 21 23 25 26 28 30 31 31 31 LCS_GDT A 28 A 28 6 7 22 3 5 6 6 7 8 11 12 13 14 17 21 23 25 26 28 30 31 31 31 LCS_GDT I 29 I 29 6 7 22 3 5 6 6 7 8 11 12 13 14 17 21 23 25 26 28 30 31 31 31 LCS_GDT Y 30 Y 30 6 7 22 3 5 6 6 7 8 11 12 15 17 17 21 23 25 26 28 30 31 31 31 LCS_GDT D 31 D 31 6 7 22 3 3 6 7 9 11 14 15 16 17 17 20 21 25 26 28 30 31 31 31 LCS_GDT K 32 K 32 3 7 22 3 3 4 4 7 11 14 15 16 17 17 20 21 25 26 28 30 31 31 31 LCS_GDT T 33 T 33 3 4 22 3 3 4 4 7 8 14 15 16 17 17 20 23 25 26 28 30 31 31 31 LCS_GDT K 34 K 34 4 13 20 3 4 6 7 9 13 14 15 16 17 17 21 23 25 26 28 30 31 31 31 LCS_GDT K 35 K 35 6 13 20 5 8 10 11 12 13 14 15 16 17 17 21 23 25 26 28 30 31 31 31 LCS_GDT Y 36 Y 36 6 13 20 5 8 10 11 12 13 14 15 16 17 17 21 23 25 26 28 30 31 31 31 LCS_GDT W 37 W 37 6 13 20 5 8 10 11 12 13 14 15 16 17 17 21 23 25 26 28 30 31 31 31 LCS_GDT V 38 V 38 6 13 20 5 8 10 11 12 13 14 15 16 17 17 21 23 25 26 28 30 31 31 31 LCS_GDT Y 39 Y 39 6 13 20 3 8 10 11 12 13 13 15 16 17 17 19 23 25 26 27 29 31 31 31 LCS_GDT Q 40 Q 40 6 13 20 3 5 6 10 12 13 13 13 16 17 17 21 23 25 26 28 30 31 31 31 LCS_GDT G 41 G 41 6 13 20 4 8 10 11 12 13 14 15 16 17 17 21 23 25 26 28 30 31 31 31 LCS_GDT K 42 K 42 6 13 20 4 8 10 11 12 13 14 15 16 17 17 21 23 25 26 28 30 31 31 31 LCS_GDT P 43 P 43 6 13 20 4 8 10 11 12 13 14 15 16 17 17 21 23 25 26 28 30 31 31 31 LCS_GDT V 44 V 44 6 13 20 5 8 10 11 12 13 14 15 16 17 17 18 20 21 24 27 27 28 30 31 LCS_GDT M 45 M 45 6 13 20 3 6 9 11 12 13 14 15 16 17 17 18 18 20 21 23 25 26 28 29 LCS_GDT P 46 P 46 6 13 20 3 8 10 11 12 13 14 15 16 17 17 18 18 20 20 23 24 25 27 29 LCS_AVERAGE LCS_A: 33.03 ( 14.29 24.08 60.73 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 8 10 11 12 13 14 15 16 17 17 21 23 25 26 28 30 31 31 31 GDT PERCENT_AT 14.29 22.86 28.57 31.43 34.29 37.14 40.00 42.86 45.71 48.57 48.57 60.00 65.71 71.43 74.29 80.00 85.71 88.57 88.57 88.57 GDT RMS_LOCAL 0.38 0.63 0.85 0.98 1.31 1.73 2.39 2.44 2.66 2.98 2.98 5.04 5.15 5.36 5.45 5.96 6.20 6.28 6.28 6.28 GDT RMS_ALL_AT 13.93 13.18 13.33 13.33 13.09 13.77 14.80 14.54 14.28 13.65 13.65 7.74 7.78 7.71 7.70 7.62 7.68 7.65 7.65 7.65 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: D 19 D 19 # possible swapping detected: D 31 D 31 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 25.446 0 0.549 0.752 29.853 0.000 0.000 LGA F 13 F 13 19.318 0 0.058 1.416 21.069 0.000 0.000 LGA H 14 H 14 17.390 0 0.036 1.240 21.952 0.000 0.000 LGA Y 15 Y 15 11.529 0 0.557 0.816 13.260 0.000 2.937 LGA T 16 T 16 13.075 0 0.026 0.132 13.870 0.000 0.000 LGA V 17 V 17 14.997 0 0.617 0.669 17.864 0.000 0.000 LGA T 18 T 18 17.403 0 0.399 1.067 20.711 0.000 0.000 LGA D 19 D 19 19.990 0 0.065 1.339 25.392 0.000 0.000 LGA I 20 I 20 18.150 0 0.610 1.540 18.485 0.000 0.000 LGA K 21 K 21 20.971 0 0.499 1.269 26.350 0.000 0.000 LGA D 22 D 22 25.885 0 0.617 0.603 29.318 0.000 0.000 LGA L 23 L 23 24.875 0 0.597 1.331 25.091 0.000 0.000 LGA T 24 T 24 25.635 0 0.030 1.197 28.801 0.000 0.000 LGA K 25 K 25 26.985 0 0.673 1.213 33.671 0.000 0.000 LGA L 26 L 26 24.248 0 0.655 1.120 27.709 0.000 0.000 LGA G 27 G 27 18.298 0 0.510 0.510 20.376 0.000 0.000 LGA A 28 A 28 15.384 0 0.034 0.039 16.305 0.000 0.000 LGA I 29 I 29 9.118 0 0.098 0.142 11.652 1.905 1.429 LGA Y 30 Y 30 6.620 0 0.095 1.158 16.123 31.190 10.635 LGA D 31 D 31 3.792 0 0.419 1.201 8.653 38.810 26.845 LGA K 32 K 32 3.489 0 0.583 1.151 5.057 43.690 44.762 LGA T 33 T 33 4.079 0 0.683 0.604 6.862 39.167 30.408 LGA K 34 K 34 3.606 0 0.206 0.733 14.403 52.143 26.349 LGA K 35 K 35 2.828 0 0.225 1.271 5.142 60.952 49.630 LGA Y 36 Y 36 1.761 0 0.077 1.353 8.222 70.833 50.000 LGA W 37 W 37 1.698 0 0.085 0.187 5.677 81.548 52.857 LGA V 38 V 38 1.719 0 0.141 1.198 4.379 68.810 64.286 LGA Y 39 Y 39 2.890 0 0.177 0.172 5.327 46.310 42.897 LGA Q 40 Q 40 5.340 0 0.371 1.090 8.767 30.476 18.360 LGA G 41 G 41 0.480 0 0.617 0.617 2.022 82.024 82.024 LGA K 42 K 42 0.566 0 0.049 0.899 3.473 90.476 81.058 LGA P 43 P 43 0.991 0 0.067 0.187 1.595 90.476 85.374 LGA V 44 V 44 0.480 0 0.049 0.991 2.461 86.190 80.680 LGA M 45 M 45 1.945 0 0.170 0.811 4.495 75.000 60.298 LGA P 46 P 46 1.537 0 0.056 0.272 2.043 70.833 71.701 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 7.572 7.505 8.764 30.310 25.215 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 15 2.44 44.286 38.815 0.590 LGA_LOCAL RMSD: 2.441 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.543 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 7.572 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.299086 * X + 0.177885 * Y + 0.937499 * Z + 31.549431 Y_new = -0.949781 * X + 0.150215 * Y + 0.274502 * Z + -70.098457 Z_new = -0.091997 * X + -0.972519 * Y + 0.213879 * Z + 54.038582 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.265727 0.092127 -1.354320 [DEG: -72.5208 5.2785 -77.5968 ] ZXZ: 1.855636 1.355253 -3.047276 [DEG: 106.3201 77.6503 -174.5961 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS077_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS077_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 15 2.44 38.815 7.57 REMARK ---------------------------------------------------------- MOLECULE T0548TS077_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3l2tA ATOM 87 N HIS 12 -48.449 -8.813 21.080 1.00 92.56 N ATOM 88 CA HIS 12 -49.754 -9.325 20.774 1.00 92.56 C ATOM 89 ND1 HIS 12 -48.957 -9.124 17.240 1.00 92.56 N ATOM 90 CG HIS 12 -49.814 -9.676 18.168 1.00 92.56 C ATOM 91 CB HIS 12 -50.326 -8.948 19.381 1.00 92.56 C ATOM 92 NE2 HIS 12 -49.468 -11.162 16.507 1.00 92.56 N ATOM 93 CD2 HIS 12 -50.112 -10.921 17.707 1.00 92.56 C ATOM 94 CE1 HIS 12 -48.787 -10.056 16.267 1.00 92.56 C ATOM 95 C HIS 12 -49.854 -10.799 21.011 1.00 92.56 C ATOM 96 O HIS 12 -50.676 -11.483 20.402 1.00 92.56 O ATOM 97 N PHE 13 -49.016 -11.328 21.923 1.00191.46 N ATOM 98 CA PHE 13 -49.255 -12.651 22.417 1.00191.46 C ATOM 99 CB PHE 13 -48.525 -13.817 21.710 1.00191.46 1 ATOM 100 CG PHE 13 -47.042 -13.676 21.663 1.00191.46 1 ATOM 101 CD1 PHE 13 -46.263 -13.941 22.765 1.00191.46 1 ATOM 102 CD2 PHE 13 -46.431 -13.283 20.494 1.00191.46 1 ATOM 103 CE1 PHE 13 -44.895 -13.814 22.699 1.00191.46 1 ATOM 104 CE2 PHE 13 -45.064 -13.158 20.424 1.00191.46 1 ATOM 105 CZ PHE 13 -44.290 -13.424 21.528 1.00191.46 1 ATOM 106 C PHE 13 -48.940 -12.625 23.880 1.00191.46 1 ATOM 107 O PHE 13 -47.862 -12.191 24.283 1.00191.46 1 ATOM 108 N HIS 14 -49.888 -13.079 24.727 1.00106.52 1 ATOM 109 CA HIS 14 -49.651 -13.008 26.142 1.00106.52 1 ATOM 110 ND1 HIS 14 -51.329 -10.120 26.055 1.00106.52 1 ATOM 111 CG HIS 14 -50.859 -10.950 27.049 1.00106.52 1 ATOM 112 CB HIS 14 -50.825 -12.448 26.973 1.00106.52 1 ATOM 113 NE2 HIS 14 -50.652 -8.803 27.716 1.00106.52 1 ATOM 114 CD2 HIS 14 -50.451 -10.129 28.054 1.00106.52 1 ATOM 115 CE1 HIS 14 -51.182 -8.849 26.506 1.00106.52 1 ATOM 116 C HIS 14 -49.377 -14.366 26.676 1.00106.52 1 ATOM 117 O HIS 14 -50.168 -15.293 26.511 1.00106.52 1 ATOM 118 N TYR 15 -48.200 -14.520 27.306 1.00166.79 1 ATOM 119 CA TYR 15 -47.882 -15.757 27.941 1.00166.79 1 ATOM 120 CB TYR 15 -46.469 -15.787 28.547 1.00166.79 1 ATOM 121 CG TYR 15 -45.466 -15.630 27.463 1.00166.79 1 ATOM 122 CD1 TYR 15 -45.013 -16.718 26.754 1.00166.79 1 ATOM 123 CD2 TYR 15 -44.979 -14.382 27.161 1.00166.79 1 ATOM 124 CE1 TYR 15 -44.081 -16.557 25.757 1.00166.79 1 ATOM 125 CE2 TYR 15 -44.049 -14.216 26.165 1.00166.79 1 ATOM 126 CZ TYR 15 -43.599 -15.305 25.461 1.00166.79 1 ATOM 127 OH TYR 15 -42.644 -15.134 24.440 1.00166.79 1 ATOM 128 C TYR 15 -48.796 -15.888 29.116 1.00166.79 1 ATOM 129 O TYR 15 -49.414 -16.927 29.336 1.00166.79 1 ATOM 130 N THR 16 -48.922 -14.793 29.888 1.00233.83 1 ATOM 131 CA THR 16 -49.616 -14.850 31.139 1.00233.83 1 ATOM 132 CB THR 16 -49.026 -13.938 32.176 1.00233.83 1 ATOM 133 OG1 THR 16 -49.090 -12.590 31.733 1.00233.83 1 ATOM 134 CG2 THR 16 -47.567 -14.344 32.430 1.00233.83 1 ATOM 135 C THR 16 -51.049 -14.467 31.005 1.00233.83 1 ATOM 136 O THR 16 -51.521 -14.030 29.957 1.00233.83 1 ATOM 137 N VAL 17 -51.779 -14.681 32.119 1.00 63.53 1 ATOM 138 CA VAL 17 -53.142 -14.283 32.271 1.00 63.53 1 ATOM 139 CB VAL 17 -54.060 -15.415 32.627 1.00 63.53 1 ATOM 140 CG1 VAL 17 -55.454 -14.848 32.941 1.00 63.53 1 ATOM 141 CG2 VAL 17 -54.055 -16.418 31.459 1.00 63.53 1 ATOM 142 C VAL 17 -53.118 -13.319 33.411 1.00 63.53 1 ATOM 143 O VAL 17 -52.460 -13.558 34.423 1.00 63.53 1 ATOM 144 N THR 18 -53.829 -12.190 33.263 1.00184.29 1 ATOM 145 CA THR 18 -53.766 -11.160 34.255 1.00184.29 1 ATOM 146 CB THR 18 -53.595 -9.789 33.637 1.00184.29 1 ATOM 147 OG1 THR 18 -53.383 -8.796 34.632 1.00184.29 1 ATOM 148 CG2 THR 18 -54.799 -9.459 32.743 1.00184.29 1 ATOM 149 C THR 18 -54.978 -11.221 35.141 1.00184.29 1 ATOM 150 O THR 18 -55.361 -12.284 35.628 1.00184.29 1 ATOM 151 N ASP 19 -55.596 -10.050 35.376 1.00 84.26 1 ATOM 152 CA ASP 19 -56.691 -9.819 36.266 1.00 84.26 1 ATOM 153 CB ASP 19 -57.112 -8.337 36.252 1.00 84.26 1 ATOM 154 CG ASP 19 -57.981 -8.038 37.464 1.00 84.26 1 ATOM 155 OD1 ASP 19 -58.258 -8.981 38.252 1.00 84.26 1 ATOM 156 OD2 ASP 19 -58.388 -6.854 37.611 1.00 84.26 1 ATOM 157 C ASP 19 -57.882 -10.628 35.862 1.00 84.26 1 ATOM 158 O ASP 19 -58.592 -11.153 36.719 1.00 84.26 1 ATOM 159 N ILE 20 -58.139 -10.768 34.548 1.00118.31 1 ATOM 160 CA ILE 20 -59.342 -11.449 34.174 1.00118.31 1 ATOM 161 CB ILE 20 -59.755 -11.256 32.741 1.00118.31 1 ATOM 162 CG2 ILE 20 -59.983 -9.753 32.515 1.00118.31 1 ATOM 163 CG1 ILE 20 -58.730 -11.876 31.775 1.00118.31 1 ATOM 164 CD1 ILE 20 -59.245 -11.985 30.339 1.00118.31 1 ATOM 165 C ILE 20 -59.193 -12.916 34.399 1.00118.31 1 ATOM 166 O ILE 20 -58.210 -13.537 33.995 1.00118.31 1 ATOM 167 N LYS 21 -60.201 -13.493 35.079 1.00149.72 1 ATOM 168 CA LYS 21 -60.288 -14.903 35.305 1.00149.72 1 ATOM 169 CB LYS 21 -60.606 -15.319 36.755 1.00149.72 1 ATOM 170 CG LYS 21 -59.438 -15.141 37.730 1.00149.72 1 ATOM 171 CD LYS 21 -59.830 -15.317 39.200 1.00149.72 1 ATOM 172 CE LYS 21 -60.802 -14.251 39.707 1.00149.72 1 ATOM 173 NZ LYS 21 -61.092 -14.465 41.144 1.00149.72 1 ATOM 174 C LYS 21 -61.442 -15.344 34.473 1.00149.72 1 ATOM 175 O LYS 21 -61.680 -14.797 33.397 1.00149.72 1 ATOM 176 N ASP 22 -62.183 -16.364 34.941 1.00179.95 1 ATOM 177 CA ASP 22 -63.270 -16.852 34.149 1.00179.95 1 ATOM 178 CB ASP 22 -63.766 -18.235 34.592 1.00179.95 1 ATOM 179 CG ASP 22 -62.615 -19.228 34.457 1.00179.95 1 ATOM 180 OD1 ASP 22 -61.465 -18.780 34.197 1.00179.95 1 ATOM 181 OD2 ASP 22 -62.878 -20.450 34.617 1.00179.95 1 ATOM 182 C ASP 22 -64.430 -15.913 34.274 1.00179.95 1 ATOM 183 O ASP 22 -65.009 -15.758 35.349 1.00179.95 1 ATOM 184 N LEU 23 -64.796 -15.263 33.151 1.00245.18 1 ATOM 185 CA LEU 23 -65.937 -14.394 33.135 1.00245.18 1 ATOM 186 CB LEU 23 -65.658 -12.969 32.620 1.00245.18 1 ATOM 187 CG LEU 23 -64.812 -12.125 33.589 1.00245.18 1 ATOM 188 CD1 LEU 23 -65.521 -11.989 34.945 1.00245.18 1 ATOM 189 CD2 LEU 23 -63.369 -12.641 33.705 1.00245.18 1 ATOM 190 C LEU 23 -66.958 -15.015 32.238 1.00245.18 1 ATOM 191 O LEU 23 -66.627 -15.804 31.356 1.00245.18 1 ATOM 192 N THR 24 -68.241 -14.674 32.469 1.00128.98 1 ATOM 193 CA THR 24 -69.333 -15.221 31.720 1.00128.98 1 ATOM 194 CB THR 24 -70.677 -14.799 32.243 1.00128.98 1 ATOM 195 OG1 THR 24 -71.698 -15.584 31.649 1.00128.98 1 ATOM 196 CG2 THR 24 -70.898 -13.309 31.931 1.00128.98 1 ATOM 197 C THR 24 -69.201 -14.770 30.301 1.00128.98 1 ATOM 198 O THR 24 -69.541 -15.504 29.374 1.00128.98 1 ATOM 199 N LYS 25 -68.717 -13.532 30.095 1.00231.71 2 ATOM 200 CA LYS 25 -68.520 -13.028 28.768 1.00231.71 2 ATOM 201 CB LYS 25 -68.266 -11.511 28.701 1.00231.71 2 ATOM 202 CG LYS 25 -69.386 -10.682 29.336 1.00231.71 2 ATOM 203 CD LYS 25 -70.775 -11.017 28.791 1.00231.71 2 ATOM 204 CE LYS 25 -71.076 -10.393 27.429 1.00231.71 2 ATOM 205 NZ LYS 25 -70.076 -10.838 26.435 1.00231.71 2 ATOM 206 C LYS 25 -67.297 -13.702 28.246 1.00231.71 2 ATOM 207 O LYS 25 -66.716 -14.544 28.931 1.00231.71 2 ATOM 208 N LEU 26 -66.897 -13.379 27.000 1.00236.78 2 ATOM 209 CA LEU 26 -65.724 -14.010 26.476 1.00236.78 2 ATOM 210 CB LEU 26 -65.279 -13.494 25.098 1.00236.78 2 ATOM 211 CG LEU 26 -66.198 -13.900 23.940 1.00236.78 2 ATOM 212 CD1 LEU 26 -66.116 -15.411 23.678 1.00236.78 2 ATOM 213 CD2 LEU 26 -67.634 -13.408 24.173 1.00236.78 2 ATOM 214 C LEU 26 -64.606 -13.690 27.401 1.00236.78 2 ATOM 215 O LEU 26 -64.388 -12.536 27.768 1.00236.78 2 ATOM 216 N GLY 27 -63.870 -14.732 27.815 1.00133.49 2 ATOM 217 CA GLY 27 -62.746 -14.529 28.670 1.00133.49 2 ATOM 218 C GLY 27 -62.149 -15.874 28.857 1.00133.49 2 ATOM 219 O GLY 27 -62.782 -16.773 29.405 1.00133.49 2 ATOM 220 N ALA 28 -60.893 -16.043 28.418 1.00233.31 2 ATOM 221 CA ALA 28 -60.331 -17.347 28.549 1.00233.31 2 ATOM 222 CB ALA 28 -60.448 -18.192 27.267 1.00233.31 2 ATOM 223 C ALA 28 -58.882 -17.202 28.851 1.00233.31 2 ATOM 224 O ALA 28 -58.279 -16.155 28.614 1.00233.31 2 ATOM 225 N ILE 29 -58.293 -18.277 29.404 1.00156.20 2 ATOM 226 CA ILE 29 -56.892 -18.290 29.686 1.00156.20 2 ATOM 227 CB ILE 29 -56.542 -19.203 30.829 1.00156.20 2 ATOM 228 CG2 ILE 29 -57.173 -18.630 32.110 1.00156.20 2 ATOM 229 CG1 ILE 29 -56.961 -20.649 30.518 1.00156.20 2 ATOM 230 CD1 ILE 29 -56.494 -21.658 31.565 1.00156.20 2 ATOM 231 C ILE 29 -56.247 -18.777 28.433 1.00156.20 2 ATOM 232 O ILE 29 -56.604 -19.830 27.907 1.00156.20 2 ATOM 233 N TYR 30 -55.288 -17.990 27.906 1.00336.92 2 ATOM 234 CA TYR 30 -54.703 -18.310 26.637 1.00336.92 2 ATOM 235 CB TYR 30 -55.091 -17.250 25.586 1.00336.92 2 ATOM 236 CG TYR 30 -54.794 -17.684 24.190 1.00336.92 2 ATOM 237 CD1 TYR 30 -53.538 -17.554 23.646 1.00336.92 2 ATOM 238 CD2 TYR 30 -55.803 -18.202 23.407 1.00336.92 2 ATOM 239 CE1 TYR 30 -53.294 -17.948 22.348 1.00336.92 2 ATOM 240 CE2 TYR 30 -55.564 -18.598 22.111 1.00336.92 2 ATOM 241 CZ TYR 30 -54.305 -18.471 21.578 1.00336.92 2 ATOM 242 OH TYR 30 -54.051 -18.873 20.248 1.00336.92 2 ATOM 243 C TYR 30 -53.214 -18.303 26.806 1.00336.92 2 ATOM 244 O TYR 30 -52.662 -17.482 27.536 1.00336.92 2 ATOM 245 N ASP 31 -52.531 -19.244 26.125 1.00169.32 2 ATOM 246 CA ASP 31 -51.105 -19.389 26.184 1.00169.32 2 ATOM 247 CB ASP 31 -50.336 -18.111 25.812 1.00169.32 2 ATOM 248 CG ASP 31 -50.524 -17.851 24.327 1.00169.32 2 ATOM 249 OD1 ASP 31 -51.005 -18.773 23.619 1.00169.32 2 ATOM 250 OD2 ASP 31 -50.203 -16.718 23.884 1.00169.32 2 ATOM 251 C ASP 31 -50.716 -19.732 27.580 1.00169.32 2 ATOM 252 O ASP 31 -49.541 -19.645 27.937 1.00169.32 2 ATOM 253 N LYS 32 -51.673 -20.178 28.407 1.00152.87 2 ATOM 254 CA LYS 32 -51.309 -20.504 29.753 1.00152.87 2 ATOM 255 CB LYS 32 -52.261 -19.927 30.811 1.00152.87 2 ATOM 256 CG LYS 32 -51.960 -20.379 32.245 1.00152.87 2 ATOM 257 CD LYS 32 -50.750 -19.716 32.902 1.00152.87 2 ATOM 258 CE LYS 32 -50.533 -20.175 34.345 1.00152.87 2 ATOM 259 NZ LYS 32 -51.792 -20.033 35.111 1.00152.87 2 ATOM 260 C LYS 32 -51.393 -21.979 29.900 1.00152.87 2 ATOM 261 O LYS 32 -52.444 -22.582 29.683 1.00152.87 2 ATOM 262 N THR 33 -50.259 -22.603 30.254 1.00 44.74 2 ATOM 263 CA THR 33 -50.262 -24.005 30.519 1.00 44.74 2 ATOM 264 CB THR 33 -49.617 -24.815 29.440 1.00 44.74 2 ATOM 265 OG1 THR 33 -50.265 -24.568 28.201 1.00 44.74 2 ATOM 266 CG2 THR 33 -49.750 -26.299 29.811 1.00 44.74 2 ATOM 267 C THR 33 -49.460 -24.151 31.771 1.00 44.74 2 ATOM 268 O THR 33 -48.431 -23.498 31.934 1.00 44.74 2 ATOM 269 N LYS 34 -49.908 -25.012 32.704 1.00160.47 2 ATOM 270 CA LYS 34 -49.215 -25.104 33.957 1.00160.47 2 ATOM 271 CB LYS 34 -49.857 -26.098 34.934 1.00160.47 2 ATOM 272 CG LYS 34 -49.100 -26.232 36.258 1.00160.47 2 ATOM 273 CD LYS 34 -49.145 -24.981 37.136 1.00160.47 2 ATOM 274 CE LYS 34 -48.815 -25.264 38.603 1.00160.47 2 ATOM 275 NZ LYS 34 -49.925 -26.023 39.221 1.00160.47 2 ATOM 276 C LYS 34 -47.817 -25.573 33.758 1.00160.47 2 ATOM 277 O LYS 34 -46.876 -24.951 34.249 1.00160.47 2 ATOM 278 N LYS 35 -47.626 -26.684 33.033 1.00237.91 2 ATOM 279 CA LYS 35 -46.279 -27.152 32.944 1.00237.91 2 ATOM 280 CB LYS 35 -46.146 -28.548 32.315 1.00237.91 2 ATOM 281 CG LYS 35 -46.461 -29.669 33.309 1.00237.91 2 ATOM 282 CD LYS 35 -45.512 -29.691 34.513 1.00237.91 2 ATOM 283 CE LYS 35 -44.038 -29.888 34.132 1.00237.91 2 ATOM 284 NZ LYS 35 -43.188 -29.863 35.342 1.00237.91 2 ATOM 285 C LYS 35 -45.447 -26.188 32.173 1.00237.91 2 ATOM 286 O LYS 35 -44.366 -25.806 32.619 1.00237.91 2 ATOM 287 N TYR 36 -45.933 -25.729 31.009 1.00127.38 2 ATOM 288 CA TYR 36 -45.077 -24.862 30.260 1.00127.38 2 ATOM 289 CB TYR 36 -44.585 -25.471 28.930 1.00127.38 2 ATOM 290 CG TYR 36 -43.652 -26.601 29.222 1.00127.38 2 ATOM 291 CD1 TYR 36 -44.130 -27.836 29.601 1.00127.38 2 ATOM 292 CD2 TYR 36 -42.289 -26.435 29.094 1.00127.38 2 ATOM 293 CE1 TYR 36 -43.270 -28.876 29.867 1.00127.38 2 ATOM 294 CE2 TYR 36 -41.423 -27.471 29.358 1.00127.38 2 ATOM 295 CZ TYR 36 -41.911 -28.696 29.744 1.00127.38 2 ATOM 296 OH TYR 36 -41.023 -29.759 30.014 1.00127.38 2 ATOM 297 C TYR 36 -45.819 -23.619 29.907 1.00127.38 2 ATOM 298 O TYR 36 -47.015 -23.648 29.616 1.00127.38 2 ATOM 299 N TRP 37 -45.123 -22.470 29.961 1.00 81.87 3 ATOM 300 CA TRP 37 -45.758 -21.274 29.514 1.00 81.87 3 ATOM 301 CB TRP 37 -45.088 -20.010 30.069 1.00 81.87 3 ATOM 302 CG TRP 37 -45.248 -19.952 31.572 1.00 81.87 3 ATOM 303 CD2 TRP 37 -46.250 -19.188 32.263 1.00 81.87 3 ATOM 304 CD1 TRP 37 -44.529 -20.601 32.534 1.00 81.87 3 ATOM 305 NE1 TRP 37 -45.025 -20.298 33.777 1.00 81.87 3 ATOM 306 CE2 TRP 37 -46.083 -19.429 33.626 1.00 81.87 3 ATOM 307 CE3 TRP 37 -47.230 -18.360 31.799 1.00 81.87 3 ATOM 308 CZ2 TRP 37 -46.897 -18.840 34.551 1.00 81.87 3 ATOM 309 CZ3 TRP 37 -48.049 -17.764 32.733 1.00 81.87 3 ATOM 310 CH2 TRP 37 -47.885 -18.001 34.082 1.00 81.87 3 ATOM 311 C TRP 37 -45.641 -21.348 28.031 1.00 81.87 3 ATOM 312 O TRP 37 -44.587 -21.695 27.498 1.00 81.87 3 ATOM 313 N VAL 38 -46.723 -21.034 27.305 1.00117.31 3 ATOM 314 CA VAL 38 -46.636 -21.291 25.903 1.00117.31 3 ATOM 315 CB VAL 38 -47.547 -22.386 25.425 1.00117.31 3 ATOM 316 CG1 VAL 38 -47.101 -23.717 26.050 1.00117.31 3 ATOM 317 CG2 VAL 38 -48.992 -21.990 25.765 1.00117.31 3 ATOM 318 C VAL 38 -46.980 -20.090 25.106 1.00117.31 3 ATOM 319 O VAL 38 -47.311 -19.019 25.616 1.00117.31 3 ATOM 320 N TYR 39 -46.861 -20.295 23.786 1.00178.14 3 ATOM 321 CA TYR 39 -47.107 -19.358 22.742 1.00178.14 3 ATOM 322 CB TYR 39 -45.840 -19.128 21.890 1.00178.14 3 ATOM 323 CG TYR 39 -46.097 -18.295 20.677 1.00178.14 3 ATOM 324 CD1 TYR 39 -46.370 -16.950 20.772 1.00178.14 3 ATOM 325 CD2 TYR 39 -46.027 -18.868 19.427 1.00178.14 3 ATOM 326 CE1 TYR 39 -46.592 -16.197 19.641 1.00178.14 3 ATOM 327 CE2 TYR 39 -46.246 -18.123 18.294 1.00178.14 3 ATOM 328 CZ TYR 39 -46.532 -16.782 18.399 1.00178.14 3 ATOM 329 OH TYR 39 -46.758 -16.014 17.236 1.00178.14 3 ATOM 330 C TYR 39 -48.146 -20.021 21.907 1.00178.14 3 ATOM 331 O TYR 39 -48.443 -21.201 22.095 1.00178.14 3 ATOM 332 N GLN 40 -48.731 -19.272 20.962 1.00158.36 3 ATOM 333 CA GLN 40 -49.798 -19.779 20.163 1.00158.36 3 ATOM 334 CB GLN 40 -50.243 -18.765 19.098 1.00158.36 3 ATOM 335 CG GLN 40 -49.163 -18.473 18.060 1.00158.36 3 ATOM 336 CD GLN 40 -49.517 -17.155 17.395 1.00158.36 3 ATOM 337 OE1 GLN 40 -49.268 -16.090 17.959 1.00158.36 3 ATOM 338 NE2 GLN 40 -50.111 -17.220 16.176 1.00158.36 3 ATOM 339 C GLN 40 -49.290 -21.008 19.491 1.00158.36 3 ATOM 340 O GLN 40 -50.030 -21.970 19.301 1.00158.36 3 ATOM 341 N GLY 41 -47.994 -21.008 19.131 1.00143.68 3 ATOM 342 CA GLY 41 -47.403 -22.152 18.512 1.00143.68 3 ATOM 343 C GLY 41 -46.780 -22.966 19.603 1.00143.68 3 ATOM 344 O GLY 41 -47.457 -23.439 20.513 1.00143.68 3 ATOM 345 N LYS 42 -45.456 -23.163 19.516 1.00125.81 3 ATOM 346 CA LYS 42 -44.722 -23.976 20.442 1.00125.81 3 ATOM 347 CB LYS 42 -43.299 -24.278 19.960 1.00125.81 3 ATOM 348 CG LYS 42 -43.274 -25.264 18.798 1.00125.81 3 ATOM 349 CD LYS 42 -43.999 -24.766 17.546 1.00125.81 3 ATOM 350 CE LYS 42 -43.994 -25.786 16.404 1.00125.81 3 ATOM 351 NZ LYS 42 -44.670 -25.216 15.216 1.00125.81 3 ATOM 352 C LYS 42 -44.594 -23.300 21.765 1.00125.81 3 ATOM 353 O LYS 42 -44.814 -22.096 21.920 1.00125.81 3 ATOM 354 N PRO 43 -44.302 -24.122 22.737 1.00139.16 3 ATOM 355 CA PRO 43 -44.096 -23.624 24.071 1.00139.16 3 ATOM 356 CD PRO 43 -44.928 -25.438 22.747 1.00139.16 3 ATOM 357 CB PRO 43 -44.331 -24.806 25.006 1.00139.16 3 ATOM 358 CG PRO 43 -45.281 -25.720 24.214 1.00139.16 3 ATOM 359 C PRO 43 -42.745 -23.007 24.240 1.00139.16 3 ATOM 360 O PRO 43 -41.838 -23.322 23.468 1.00139.16 3 ATOM 361 N VAL 44 -42.594 -22.114 25.241 1.00103.23 3 ATOM 362 CA VAL 44 -41.313 -21.520 25.478 1.00103.23 3 ATOM 363 CB VAL 44 -41.316 -20.019 25.565 1.00103.23 3 ATOM 364 CG1 VAL 44 -42.091 -19.572 26.818 1.00103.23 3 ATOM 365 CG2 VAL 44 -39.855 -19.538 25.546 1.00103.23 3 ATOM 366 C VAL 44 -40.815 -22.041 26.783 1.00103.23 3 ATOM 367 O VAL 44 -41.527 -22.069 27.785 1.00103.23 3 ATOM 368 N MET 45 -39.559 -22.504 26.798 1.00112.87 3 ATOM 369 CA MET 45 -38.999 -23.012 28.010 1.00112.87 3 ATOM 370 CB MET 45 -38.050 -24.198 27.763 1.00112.87 3 ATOM 371 CG MET 45 -38.807 -25.471 27.361 1.00112.87 3 ATOM 372 SD MET 45 -37.806 -26.748 26.537 1.00112.87 3 ATOM 373 CE MET 45 -38.753 -28.172 27.155 1.00112.87 3 ATOM 374 C MET 45 -38.278 -21.892 28.687 1.00112.87 3 ATOM 375 O MET 45 -37.943 -20.875 28.080 1.00112.87 3 ATOM 376 N PRO 46 -38.060 -22.054 29.958 1.00 80.54 3 ATOM 377 CA PRO 46 -37.366 -21.051 30.712 1.00 80.54 3 ATOM 378 CD PRO 46 -38.968 -22.818 30.794 1.00 80.54 3 ATOM 379 CB PRO 46 -37.622 -21.367 32.189 1.00 80.54 3 ATOM 380 CG PRO 46 -38.317 -22.744 32.183 1.00 80.54 3 ATOM 381 C PRO 46 -35.931 -21.052 30.309 1.00 80.54 3 ATOM 382 O PRO 46 -35.464 -22.033 29.735 1.00 80.54 3 TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 81.38 47.1 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 80.51 52.9 34 100.0 34 ARMSMC SURFACE . . . . . . . . 83.43 46.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 71.03 50.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.68 40.6 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 78.58 41.4 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 86.16 41.2 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 81.42 37.0 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 76.57 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.30 56.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 61.07 66.7 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 62.77 69.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 75.09 59.1 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 91.86 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 101.99 37.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 102.92 42.9 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 135.07 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 101.99 37.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 100.06 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 100.06 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 124.22 0.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 100.06 33.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.57 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.57 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2163 CRMSCA SECONDARY STRUCTURE . . 6.42 17 100.0 17 CRMSCA SURFACE . . . . . . . . 7.64 29 100.0 29 CRMSCA BURIED . . . . . . . . 7.24 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.73 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 6.49 85 100.0 85 CRMSMC SURFACE . . . . . . . . 7.83 143 100.0 143 CRMSMC BURIED . . . . . . . . 7.22 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.81 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 9.27 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 9.19 84 100.0 84 CRMSSC SURFACE . . . . . . . . 10.11 127 100.0 127 CRMSSC BURIED . . . . . . . . 8.32 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.80 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 8.00 152 100.0 152 CRMSALL SURFACE . . . . . . . . 9.00 243 100.0 243 CRMSALL BURIED . . . . . . . . 7.80 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 147.521 0.897 0.904 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 157.950 0.917 0.921 17 100.0 17 ERRCA SURFACE . . . . . . . . 146.800 0.895 0.903 29 100.0 29 ERRCA BURIED . . . . . . . . 151.003 0.903 0.908 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 147.643 0.896 0.903 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 157.941 0.917 0.921 85 100.0 85 ERRMC SURFACE . . . . . . . . 146.937 0.895 0.902 143 100.0 143 ERRMC BURIED . . . . . . . . 151.004 0.902 0.908 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 148.917 0.873 0.883 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 153.087 0.882 0.890 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 159.182 0.886 0.893 84 100.0 84 ERRSC SURFACE . . . . . . . . 153.007 0.872 0.882 127 100.0 127 ERRSC BURIED . . . . . . . . 131.005 0.876 0.885 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 148.326 0.885 0.894 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 158.744 0.902 0.907 152 100.0 152 ERRALL SURFACE . . . . . . . . 150.124 0.885 0.893 243 100.0 243 ERRALL BURIED . . . . . . . . 140.080 0.888 0.895 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 7 31 35 35 DISTCA CA (P) 0.00 0.00 0.00 20.00 88.57 35 DISTCA CA (RMS) 0.00 0.00 0.00 4.38 6.34 DISTCA ALL (N) 0 0 6 50 227 296 296 DISTALL ALL (P) 0.00 0.00 2.03 16.89 76.69 296 DISTALL ALL (RMS) 0.00 0.00 2.73 4.09 6.58 DISTALL END of the results output