####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS060_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS060_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 2.32 2.32 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 34 12 - 45 1.97 2.34 LCS_AVERAGE: 95.76 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 12 - 29 0.98 2.54 LONGEST_CONTINUOUS_SEGMENT: 18 13 - 30 0.99 2.49 LCS_AVERAGE: 42.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 18 34 35 5 8 13 23 27 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT F 13 F 13 18 34 35 5 12 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT H 14 H 14 18 34 35 3 4 13 23 26 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT Y 15 Y 15 18 34 35 12 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT T 16 T 16 18 34 35 12 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT V 17 V 17 18 34 35 12 16 20 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT T 18 T 18 18 34 35 12 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT D 19 D 19 18 34 35 12 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT I 20 I 20 18 34 35 12 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT K 21 K 21 18 34 35 12 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT D 22 D 22 18 34 35 12 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT L 23 L 23 18 34 35 4 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT T 24 T 24 18 34 35 12 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT K 25 K 25 18 34 35 12 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT L 26 L 26 18 34 35 12 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT G 27 G 27 18 34 35 12 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT A 28 A 28 18 34 35 5 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT I 29 I 29 18 34 35 5 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT Y 30 Y 30 18 34 35 3 9 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT D 31 D 31 17 34 35 3 8 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT K 32 K 32 11 34 35 3 7 16 20 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT T 33 T 33 11 34 35 3 5 16 22 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT K 34 K 34 11 34 35 3 9 17 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT K 35 K 35 11 34 35 3 9 17 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT Y 36 Y 36 11 34 35 11 14 20 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT W 37 W 37 11 34 35 3 9 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT V 38 V 38 11 34 35 4 9 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT Y 39 Y 39 11 34 35 4 8 11 24 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT Q 40 Q 40 11 34 35 4 8 11 15 25 29 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT G 41 G 41 11 34 35 4 8 11 16 25 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT K 42 K 42 11 34 35 4 8 14 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT P 43 P 43 11 34 35 4 9 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT V 44 V 44 11 34 35 3 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT M 45 M 45 9 34 35 3 5 9 11 16 28 34 34 34 34 34 35 35 35 35 35 35 35 35 35 LCS_GDT P 46 P 46 5 17 35 2 3 6 9 12 15 17 19 20 28 33 35 35 35 35 35 35 35 35 35 LCS_AVERAGE LCS_A: 79.29 ( 42.12 95.76 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 16 21 25 28 30 34 34 34 34 34 35 35 35 35 35 35 35 35 35 GDT PERCENT_AT 34.29 45.71 60.00 71.43 80.00 85.71 97.14 97.14 97.14 97.14 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.24 0.57 1.05 1.30 1.45 1.60 1.97 1.97 1.97 1.97 1.97 2.32 2.32 2.32 2.32 2.32 2.32 2.32 2.32 2.32 GDT RMS_ALL_AT 2.82 2.55 2.38 2.45 2.42 2.40 2.34 2.34 2.34 2.34 2.34 2.32 2.32 2.32 2.32 2.32 2.32 2.32 2.32 2.32 # Checking swapping # possible swapping detected: F 13 F 13 # possible swapping detected: Y 30 Y 30 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 2.736 0 0.166 0.984 4.777 51.905 47.810 LGA F 13 F 13 1.602 0 0.213 0.218 4.057 70.833 63.550 LGA H 14 H 14 3.098 0 0.421 1.078 7.455 50.357 37.000 LGA Y 15 Y 15 1.263 0 0.119 0.584 3.551 73.214 65.317 LGA T 16 T 16 1.305 0 0.042 1.121 2.960 81.429 75.578 LGA V 17 V 17 1.754 0 0.063 0.156 2.426 77.143 71.837 LGA T 18 T 18 1.314 0 0.049 1.063 2.950 83.690 75.782 LGA D 19 D 19 0.850 0 0.039 0.261 1.079 88.214 88.214 LGA I 20 I 20 1.453 0 0.042 1.331 3.225 81.429 73.274 LGA K 21 K 21 1.531 0 0.031 1.297 5.330 79.286 68.783 LGA D 22 D 22 0.730 0 0.069 0.353 1.506 90.595 88.333 LGA L 23 L 23 1.407 0 0.075 0.364 2.803 81.429 73.155 LGA T 24 T 24 1.393 0 0.034 0.077 1.858 81.429 77.755 LGA K 25 K 25 0.971 0 0.117 0.528 2.782 85.952 76.085 LGA L 26 L 26 0.695 0 0.143 1.378 3.119 88.214 77.917 LGA G 27 G 27 0.833 0 0.059 0.059 0.833 90.476 90.476 LGA A 28 A 28 0.388 0 0.073 0.095 1.125 90.595 92.476 LGA I 29 I 29 0.366 0 0.108 1.091 2.761 100.000 86.667 LGA Y 30 Y 30 1.323 0 0.188 0.552 4.596 81.548 62.937 LGA D 31 D 31 1.431 0 0.068 0.338 2.574 71.190 75.238 LGA K 32 K 32 3.435 0 0.203 1.132 7.877 53.571 36.614 LGA T 33 T 33 2.482 0 0.050 0.643 3.027 66.905 61.701 LGA K 34 K 34 2.247 0 0.772 1.522 3.958 66.786 62.434 LGA K 35 K 35 2.910 0 0.418 0.872 8.524 51.905 38.571 LGA Y 36 Y 36 2.136 0 0.652 1.276 4.243 57.857 66.627 LGA W 37 W 37 1.497 0 0.352 1.183 3.874 79.524 64.320 LGA V 38 V 38 0.931 0 0.243 0.284 1.113 88.333 86.667 LGA Y 39 Y 39 2.101 0 0.066 0.356 3.494 68.810 65.198 LGA Q 40 Q 40 3.478 0 0.079 0.136 4.040 46.905 51.005 LGA G 41 G 41 3.299 0 0.065 0.065 3.342 53.571 53.571 LGA K 42 K 42 2.090 0 0.139 0.949 8.887 68.810 47.619 LGA P 43 P 43 1.010 0 0.075 0.314 1.954 90.714 83.061 LGA V 44 V 44 1.052 0 0.093 0.084 3.092 79.762 72.381 LGA M 45 M 45 3.910 0 0.159 0.962 8.420 38.214 26.190 LGA P 46 P 46 7.770 0 0.076 0.083 8.693 9.048 9.048 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 2.320 2.383 2.950 71.990 65.520 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 34 1.97 78.571 86.783 1.643 LGA_LOCAL RMSD: 1.970 Number of atoms: 34 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.344 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 2.320 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.617228 * X + 0.480154 * Y + -0.623283 * Z + 11.071454 Y_new = -0.209224 * X + -0.863834 * Y + -0.458274 * Z + 66.868523 Z_new = -0.758456 * X + -0.152454 * Y + 0.633643 * Z + 43.275890 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.814774 0.860940 -0.236111 [DEG: -161.2747 49.3282 -13.5282 ] ZXZ: -0.936797 0.884544 -1.769158 [DEG: -53.6745 50.6806 -101.3653 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS060_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS060_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 34 1.97 86.783 2.32 REMARK ---------------------------------------------------------- MOLECULE T0548TS060_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT 3l2t_A 3l2q_A 1k6y_A 2d1h_A 3f9k_A ATOM 87 N HIS 12 -41.601 -28.682 36.337 1.00 0.00 N ATOM 88 CA HIS 12 -42.613 -27.806 35.848 1.00 0.00 C ATOM 89 ND1 HIS 12 -45.620 -29.150 36.959 1.00 0.00 N ATOM 90 CG HIS 12 -44.386 -28.724 37.397 1.00 0.00 C ATOM 91 CB HIS 12 -43.687 -27.496 36.901 1.00 0.00 C ATOM 92 NE2 HIS 12 -44.927 -30.636 38.463 1.00 0.00 N ATOM 93 CD2 HIS 12 -43.978 -29.641 38.314 1.00 0.00 C ATOM 94 CE1 HIS 12 -45.894 -30.297 37.629 1.00 0.00 C ATOM 95 C HIS 12 -41.855 -26.542 35.630 1.00 0.00 C ATOM 96 O HIS 12 -41.499 -25.864 36.589 1.00 0.00 O ATOM 97 N PHE 13 -41.551 -26.213 34.363 1.00 0.00 N ATOM 98 CA PHE 13 -40.843 -25.007 34.073 1.00 0.00 C ATOM 99 CB PHE 13 -40.439 -24.896 32.588 1.00 0.00 C ATOM 100 CG PHE 13 -39.348 -25.885 32.354 1.00 0.00 C ATOM 101 CD1 PHE 13 -39.601 -27.235 32.427 1.00 0.00 C ATOM 102 CD2 PHE 13 -38.078 -25.467 32.035 1.00 0.00 C ATOM 103 CE1 PHE 13 -38.592 -28.146 32.216 1.00 0.00 C ATOM 104 CE2 PHE 13 -37.065 -26.373 31.820 1.00 0.00 C ATOM 105 CZ PHE 13 -37.320 -27.720 31.914 1.00 0.00 C ATOM 106 C PHE 13 -41.743 -23.867 34.408 1.00 0.00 C ATOM 107 O PHE 13 -42.541 -23.395 33.600 1.00 0.00 O ATOM 108 N HIS 14 -41.578 -23.415 35.659 1.00 0.00 N ATOM 109 CA HIS 14 -42.193 -22.320 36.336 1.00 0.00 C ATOM 110 ND1 HIS 14 -44.285 -23.465 38.564 1.00 0.00 N ATOM 111 CG HIS 14 -42.913 -23.508 38.437 1.00 0.00 C ATOM 112 CB HIS 14 -42.087 -22.391 37.869 1.00 0.00 C ATOM 113 NE2 HIS 14 -43.636 -25.450 39.328 1.00 0.00 N ATOM 114 CD2 HIS 14 -42.535 -24.726 38.909 1.00 0.00 C ATOM 115 CE1 HIS 14 -44.665 -24.652 39.102 1.00 0.00 C ATOM 116 C HIS 14 -41.512 -21.090 35.856 1.00 0.00 C ATOM 117 O HIS 14 -41.400 -20.152 36.640 1.00 0.00 O ATOM 118 N TYR 15 -40.873 -21.195 34.657 1.00 0.00 N ATOM 119 CA TYR 15 -40.115 -20.204 33.924 1.00 0.00 C ATOM 120 CB TYR 15 -40.581 -19.942 32.479 1.00 0.00 C ATOM 121 CG TYR 15 -40.231 -21.139 31.670 1.00 0.00 C ATOM 122 CD1 TYR 15 -38.915 -21.483 31.498 1.00 0.00 C ATOM 123 CD2 TYR 15 -41.198 -21.893 31.056 1.00 0.00 C ATOM 124 CE1 TYR 15 -38.567 -22.581 30.752 1.00 0.00 C ATOM 125 CE2 TYR 15 -40.858 -22.995 30.305 1.00 0.00 C ATOM 126 CZ TYR 15 -39.539 -23.343 30.154 1.00 0.00 C ATOM 127 OH TYR 15 -39.181 -24.473 29.388 1.00 0.00 H ATOM 128 C TYR 15 -40.121 -18.904 34.639 1.00 0.00 C ATOM 129 O TYR 15 -41.170 -18.302 34.861 1.00 0.00 O ATOM 130 N THR 16 -38.901 -18.451 34.967 1.00 0.00 N ATOM 131 CA THR 16 -38.631 -17.355 35.841 1.00 0.00 C ATOM 132 CB THR 16 -37.155 -17.053 35.874 1.00 0.00 C ATOM 133 OG1 THR 16 -36.440 -18.220 36.241 1.00 0.00 O ATOM 134 CG2 THR 16 -36.850 -15.942 36.888 1.00 0.00 C ATOM 135 C THR 16 -39.355 -16.134 35.382 1.00 0.00 C ATOM 136 O THR 16 -39.780 -16.022 34.234 1.00 0.00 O ATOM 137 N VAL 17 -39.497 -15.176 36.318 1.00 0.00 N ATOM 138 CA VAL 17 -40.201 -13.948 36.116 1.00 0.00 C ATOM 139 CB VAL 17 -40.144 -13.039 37.304 1.00 0.00 C ATOM 140 CG1 VAL 17 -40.753 -11.685 36.906 1.00 0.00 C ATOM 141 CG2 VAL 17 -40.873 -13.718 38.472 1.00 0.00 C ATOM 142 C VAL 17 -39.554 -13.231 34.978 1.00 0.00 C ATOM 143 O VAL 17 -40.231 -12.576 34.189 1.00 0.00 O ATOM 144 N THR 18 -38.216 -13.305 34.871 1.00 0.00 N ATOM 145 CA THR 18 -37.572 -12.641 33.778 1.00 0.00 C ATOM 146 CB THR 18 -36.076 -12.696 33.831 1.00 0.00 C ATOM 147 OG1 THR 18 -35.629 -14.034 33.701 1.00 0.00 O ATOM 148 CG2 THR 18 -35.603 -12.106 35.170 1.00 0.00 C ATOM 149 C THR 18 -37.997 -13.312 32.512 1.00 0.00 C ATOM 150 O THR 18 -38.225 -12.649 31.502 1.00 0.00 O ATOM 151 N ASP 19 -38.111 -14.655 32.537 1.00 0.00 N ATOM 152 CA ASP 19 -38.476 -15.376 31.354 1.00 0.00 C ATOM 153 CB ASP 19 -38.606 -16.891 31.598 1.00 0.00 C ATOM 154 CG ASP 19 -37.237 -17.462 31.923 1.00 0.00 C ATOM 155 OD1 ASP 19 -36.238 -16.696 31.865 1.00 0.00 O ATOM 156 OD2 ASP 19 -37.177 -18.681 32.236 1.00 0.00 O ATOM 157 C ASP 19 -39.829 -14.910 30.921 1.00 0.00 C ATOM 158 O ASP 19 -40.019 -14.552 29.760 1.00 0.00 O ATOM 159 N ILE 20 -40.803 -14.870 31.856 1.00 0.00 N ATOM 160 CA ILE 20 -42.169 -14.557 31.523 1.00 0.00 C ATOM 161 CB ILE 20 -43.119 -14.597 32.693 1.00 0.00 C ATOM 162 CG2 ILE 20 -42.953 -15.960 33.377 1.00 0.00 C ATOM 163 CG1 ILE 20 -42.864 -13.441 33.663 1.00 0.00 C ATOM 164 CD1 ILE 20 -43.980 -13.253 34.692 1.00 0.00 C ATOM 165 C ILE 20 -42.202 -13.163 30.976 1.00 0.00 C ATOM 166 O ILE 20 -42.961 -12.838 30.068 1.00 0.00 O ATOM 167 N LYS 21 -41.392 -12.273 31.555 1.00 0.00 N ATOM 168 CA LYS 21 -41.383 -10.918 31.109 1.00 0.00 C ATOM 169 CB LYS 21 -40.384 -10.111 31.948 1.00 0.00 C ATOM 170 CG LYS 21 -40.240 -8.633 31.616 1.00 0.00 C ATOM 171 CD LYS 21 -39.345 -7.910 32.627 1.00 0.00 C ATOM 172 CE LYS 21 -37.982 -8.587 32.833 1.00 0.00 C ATOM 173 NZ LYS 21 -38.111 -9.766 33.724 1.00 0.00 N ATOM 174 C LYS 21 -40.938 -10.877 29.678 1.00 0.00 C ATOM 175 O LYS 21 -41.548 -10.205 28.849 1.00 0.00 O ATOM 176 N ASP 22 -39.867 -11.624 29.348 1.00 0.00 N ATOM 177 CA ASP 22 -39.281 -11.529 28.043 1.00 0.00 C ATOM 178 CB ASP 22 -37.930 -12.249 27.944 1.00 0.00 C ATOM 179 CG ASP 22 -36.954 -11.448 28.793 1.00 0.00 C ATOM 180 OD1 ASP 22 -37.409 -10.816 29.784 1.00 0.00 O ATOM 181 OD2 ASP 22 -35.743 -11.440 28.448 1.00 0.00 O ATOM 182 C ASP 22 -40.174 -12.048 26.964 1.00 0.00 C ATOM 183 O ASP 22 -40.319 -11.404 25.929 1.00 0.00 O ATOM 184 N LEU 23 -40.784 -13.230 27.150 1.00 0.00 N ATOM 185 CA LEU 23 -41.613 -13.756 26.106 1.00 0.00 C ATOM 186 CB LEU 23 -41.987 -15.233 26.286 1.00 0.00 C ATOM 187 CG LEU 23 -40.765 -16.153 26.444 1.00 0.00 C ATOM 188 CD1 LEU 23 -41.188 -17.611 26.589 1.00 0.00 C ATOM 189 CD2 LEU 23 -39.759 -15.965 25.311 1.00 0.00 C ATOM 190 C LEU 23 -42.863 -12.931 25.984 1.00 0.00 C ATOM 191 O LEU 23 -43.371 -12.755 24.880 1.00 0.00 O ATOM 192 N THR 24 -43.398 -12.396 27.105 1.00 0.00 N ATOM 193 CA THR 24 -44.612 -11.623 27.031 1.00 0.00 C ATOM 194 CB THR 24 -45.110 -11.147 28.372 1.00 0.00 C ATOM 195 OG1 THR 24 -44.109 -10.403 29.047 1.00 0.00 O ATOM 196 CG2 THR 24 -45.529 -12.363 29.213 1.00 0.00 C ATOM 197 C THR 24 -44.372 -10.443 26.141 1.00 0.00 C ATOM 198 O THR 24 -45.222 -10.085 25.327 1.00 0.00 O ATOM 199 N LYS 25 -43.189 -9.819 26.270 1.00 0.00 N ATOM 200 CA LYS 25 -42.760 -8.712 25.465 1.00 0.00 C ATOM 201 CB LYS 25 -41.332 -8.314 25.872 1.00 0.00 C ATOM 202 CG LYS 25 -41.258 -7.861 27.334 1.00 0.00 C ATOM 203 CD LYS 25 -39.901 -8.080 28.015 1.00 0.00 C ATOM 204 CE LYS 25 -38.679 -7.738 27.159 1.00 0.00 C ATOM 205 NZ LYS 25 -37.439 -7.986 27.931 1.00 0.00 N ATOM 206 C LYS 25 -42.716 -9.229 24.059 1.00 0.00 C ATOM 207 O LYS 25 -43.102 -8.558 23.105 1.00 0.00 O ATOM 208 N LEU 26 -42.270 -10.489 23.945 1.00 0.00 N ATOM 209 CA LEU 26 -42.098 -11.288 22.768 1.00 0.00 C ATOM 210 CB LEU 26 -41.270 -12.558 23.017 1.00 0.00 C ATOM 211 CG LEU 26 -39.808 -12.218 23.361 1.00 0.00 C ATOM 212 CD1 LEU 26 -38.958 -13.485 23.543 1.00 0.00 C ATOM 213 CD2 LEU 26 -39.212 -11.232 22.344 1.00 0.00 C ATOM 214 C LEU 26 -43.433 -11.643 22.175 1.00 0.00 C ATOM 215 O LEU 26 -43.495 -12.436 21.237 1.00 0.00 O ATOM 216 N GLY 27 -44.544 -11.227 22.817 1.00 0.00 N ATOM 217 CA GLY 27 -45.833 -11.441 22.216 1.00 0.00 C ATOM 218 C GLY 27 -46.230 -12.850 22.469 1.00 0.00 C ATOM 219 O GLY 27 -47.036 -13.431 21.743 1.00 0.00 O ATOM 220 N ALA 28 -45.645 -13.432 23.524 1.00 0.00 N ATOM 221 CA ALA 28 -45.895 -14.790 23.871 1.00 0.00 C ATOM 222 CB ALA 28 -44.744 -15.438 24.656 1.00 0.00 C ATOM 223 C ALA 28 -47.116 -14.892 24.718 1.00 0.00 C ATOM 224 O ALA 28 -47.754 -13.903 25.077 1.00 0.00 O ATOM 225 N ILE 29 -47.503 -16.149 24.987 1.00 0.00 N ATOM 226 CA ILE 29 -48.582 -16.428 25.877 1.00 0.00 C ATOM 227 CB ILE 29 -49.659 -17.267 25.252 1.00 0.00 C ATOM 228 CG2 ILE 29 -50.675 -17.632 26.345 1.00 0.00 C ATOM 229 CG1 ILE 29 -50.276 -16.533 24.049 1.00 0.00 C ATOM 230 CD1 ILE 29 -51.146 -17.431 23.171 1.00 0.00 C ATOM 231 C ILE 29 -47.974 -17.242 26.967 1.00 0.00 C ATOM 232 O ILE 29 -47.362 -18.276 26.704 1.00 0.00 O ATOM 233 N TYR 30 -48.117 -16.805 28.231 1.00 0.00 N ATOM 234 CA TYR 30 -47.537 -17.615 29.252 1.00 0.00 C ATOM 235 CB TYR 30 -47.150 -16.854 30.538 1.00 0.00 C ATOM 236 CG TYR 30 -46.263 -17.755 31.332 1.00 0.00 C ATOM 237 CD1 TYR 30 -46.783 -18.729 32.151 1.00 0.00 C ATOM 238 CD2 TYR 30 -44.895 -17.639 31.235 1.00 0.00 C ATOM 239 CE1 TYR 30 -45.953 -19.561 32.871 1.00 0.00 C ATOM 240 CE2 TYR 30 -44.060 -18.466 31.952 1.00 0.00 C ATOM 241 CZ TYR 30 -44.590 -19.429 32.773 1.00 0.00 C ATOM 242 OH TYR 30 -43.740 -20.281 33.508 1.00 0.00 H ATOM 243 C TYR 30 -48.620 -18.561 29.615 1.00 0.00 C ATOM 244 O TYR 30 -49.334 -18.372 30.601 1.00 0.00 O ATOM 245 N ASP 31 -48.784 -19.582 28.750 1.00 0.00 N ATOM 246 CA ASP 31 -49.659 -20.675 29.017 1.00 0.00 C ATOM 247 CB ASP 31 -49.679 -21.694 27.864 1.00 0.00 C ATOM 248 CG ASP 31 -50.520 -22.897 28.263 1.00 0.00 C ATOM 249 OD1 ASP 31 -51.227 -22.810 29.301 1.00 0.00 O ATOM 250 OD2 ASP 31 -50.451 -23.926 27.540 1.00 0.00 O ATOM 251 C ASP 31 -48.998 -21.338 30.177 1.00 0.00 C ATOM 252 O ASP 31 -48.152 -22.212 30.014 1.00 0.00 O ATOM 253 N LYS 32 -49.368 -20.885 31.379 1.00 0.00 N ATOM 254 CA LYS 32 -48.887 -21.321 32.656 1.00 0.00 C ATOM 255 CB LYS 32 -49.410 -20.424 33.783 1.00 0.00 C ATOM 256 CG LYS 32 -49.007 -20.885 35.177 1.00 0.00 C ATOM 257 CD LYS 32 -49.410 -19.890 36.264 1.00 0.00 C ATOM 258 CE LYS 32 -49.152 -20.385 37.687 1.00 0.00 C ATOM 259 NZ LYS 32 -49.568 -19.348 38.656 1.00 0.00 N ATOM 260 C LYS 32 -49.420 -22.693 32.928 1.00 0.00 C ATOM 261 O LYS 32 -48.949 -23.394 33.824 1.00 0.00 O ATOM 262 N THR 33 -50.443 -23.079 32.149 1.00 0.00 N ATOM 263 CA THR 33 -51.281 -24.227 32.367 1.00 0.00 C ATOM 264 CB THR 33 -52.259 -24.433 31.254 1.00 0.00 C ATOM 265 OG1 THR 33 -53.043 -23.262 31.080 1.00 0.00 O ATOM 266 CG2 THR 33 -53.160 -25.626 31.612 1.00 0.00 C ATOM 267 C THR 33 -50.477 -25.473 32.485 1.00 0.00 C ATOM 268 O THR 33 -50.833 -26.368 33.246 1.00 0.00 O ATOM 269 N LYS 34 -49.436 -25.594 31.660 1.00 0.00 N ATOM 270 CA LYS 34 -48.436 -26.606 31.741 1.00 0.00 C ATOM 271 CB LYS 34 -48.292 -27.373 30.428 1.00 0.00 C ATOM 272 CG LYS 34 -49.532 -28.214 30.136 1.00 0.00 C ATOM 273 CD LYS 34 -49.721 -28.533 28.656 1.00 0.00 C ATOM 274 CE LYS 34 -49.972 -27.268 27.834 1.00 0.00 C ATOM 275 NZ LYS 34 -50.957 -26.406 28.529 1.00 0.00 N ATOM 276 C LYS 34 -47.237 -25.735 31.937 1.00 0.00 C ATOM 277 O LYS 34 -47.329 -24.543 31.656 1.00 0.00 O ATOM 278 N LYS 35 -46.097 -26.237 32.442 1.00 0.00 N ATOM 279 CA LYS 35 -45.070 -25.256 32.668 1.00 0.00 C ATOM 280 CB LYS 35 -44.247 -25.553 33.921 1.00 0.00 C ATOM 281 CG LYS 35 -45.026 -25.205 35.186 1.00 0.00 C ATOM 282 CD LYS 35 -45.353 -23.714 35.266 1.00 0.00 C ATOM 283 CE LYS 35 -46.244 -23.346 36.447 1.00 0.00 C ATOM 284 NZ LYS 35 -46.436 -21.882 36.483 1.00 0.00 N ATOM 285 C LYS 35 -44.200 -25.153 31.447 1.00 0.00 C ATOM 286 O LYS 35 -43.068 -25.629 31.396 1.00 0.00 O ATOM 287 N TYR 36 -44.872 -24.636 30.405 1.00 0.00 N ATOM 288 CA TYR 36 -44.653 -24.298 29.020 1.00 0.00 C ATOM 289 CB TYR 36 -45.940 -24.520 28.213 1.00 0.00 C ATOM 290 CG TYR 36 -45.931 -25.886 27.624 1.00 0.00 C ATOM 291 CD1 TYR 36 -45.660 -27.018 28.355 1.00 0.00 C ATOM 292 CD2 TYR 36 -46.249 -26.017 26.295 1.00 0.00 C ATOM 293 CE1 TYR 36 -45.672 -28.255 27.750 1.00 0.00 C ATOM 294 CE2 TYR 36 -46.265 -27.245 25.684 1.00 0.00 C ATOM 295 CZ TYR 36 -45.969 -28.368 26.414 1.00 0.00 C ATOM 296 OH TYR 36 -45.981 -29.633 25.790 1.00 0.00 H ATOM 297 C TYR 36 -44.100 -22.984 28.525 1.00 0.00 C ATOM 298 O TYR 36 -43.477 -22.994 27.474 1.00 0.00 O ATOM 299 N TRP 37 -44.425 -21.823 29.127 1.00 0.00 N ATOM 300 CA TRP 37 -44.023 -20.502 28.668 1.00 0.00 C ATOM 301 CB TRP 37 -42.601 -20.114 29.043 1.00 0.00 C ATOM 302 CG TRP 37 -42.383 -18.626 29.085 1.00 0.00 C ATOM 303 CD2 TRP 37 -43.319 -17.600 28.688 1.00 0.00 C ATOM 304 CD1 TRP 37 -41.321 -17.978 29.635 1.00 0.00 C ATOM 305 NE1 TRP 37 -41.537 -16.629 29.603 1.00 0.00 N ATOM 306 CE2 TRP 37 -42.760 -16.378 29.033 1.00 0.00 C ATOM 307 CE3 TRP 37 -44.563 -17.655 28.124 1.00 0.00 C ATOM 308 CZ2 TRP 37 -43.427 -15.209 28.829 1.00 0.00 C ATOM 309 CZ3 TRP 37 -45.209 -16.464 27.871 1.00 0.00 C ATOM 310 CH2 TRP 37 -44.656 -15.255 28.219 1.00 0.00 H ATOM 311 C TRP 37 -44.106 -20.379 27.156 1.00 0.00 C ATOM 312 O TRP 37 -43.082 -20.359 26.473 1.00 0.00 O ATOM 313 N VAL 38 -45.321 -20.247 26.583 1.00 0.00 N ATOM 314 CA VAL 38 -45.454 -20.343 25.152 1.00 0.00 C ATOM 315 CB VAL 38 -46.810 -20.875 24.789 1.00 0.00 C ATOM 316 CG1 VAL 38 -46.948 -20.898 23.265 1.00 0.00 C ATOM 317 CG2 VAL 38 -46.982 -22.249 25.458 1.00 0.00 C ATOM 318 C VAL 38 -45.230 -19.048 24.404 1.00 0.00 C ATOM 319 O VAL 38 -46.157 -18.278 24.163 1.00 0.00 O ATOM 320 N TYR 39 -43.985 -18.852 23.919 1.00 0.00 N ATOM 321 CA TYR 39 -43.519 -17.741 23.130 1.00 0.00 C ATOM 322 CB TYR 39 -41.988 -17.851 22.998 1.00 0.00 C ATOM 323 CG TYR 39 -41.406 -16.977 21.947 1.00 0.00 C ATOM 324 CD1 TYR 39 -41.108 -15.660 22.201 1.00 0.00 C ATOM 325 CD2 TYR 39 -41.131 -17.498 20.703 1.00 0.00 C ATOM 326 CE1 TYR 39 -40.552 -14.871 21.221 1.00 0.00 C ATOM 327 CE2 TYR 39 -40.576 -16.713 19.722 1.00 0.00 C ATOM 328 CZ TYR 39 -40.285 -15.396 19.980 1.00 0.00 C ATOM 329 OH TYR 39 -39.711 -14.587 18.976 1.00 0.00 H ATOM 330 C TYR 39 -44.141 -17.829 21.768 1.00 0.00 C ATOM 331 O TYR 39 -43.911 -18.789 21.036 1.00 0.00 O ATOM 332 N GLN 40 -44.950 -16.812 21.396 1.00 0.00 N ATOM 333 CA GLN 40 -45.571 -16.737 20.099 1.00 0.00 C ATOM 334 CB GLN 40 -44.557 -16.613 18.947 1.00 0.00 C ATOM 335 CG GLN 40 -43.744 -15.316 18.942 1.00 0.00 C ATOM 336 CD GLN 40 -42.798 -15.372 17.746 1.00 0.00 C ATOM 337 OE1 GLN 40 -42.648 -16.417 17.114 1.00 0.00 O ATOM 338 NE2 GLN 40 -42.137 -14.227 17.427 1.00 0.00 N ATOM 339 C GLN 40 -46.387 -17.965 19.829 1.00 0.00 C ATOM 340 O GLN 40 -46.609 -18.306 18.667 1.00 0.00 O ATOM 341 N GLY 41 -46.905 -18.650 20.868 1.00 0.00 N ATOM 342 CA GLY 41 -47.688 -19.826 20.581 1.00 0.00 C ATOM 343 C GLY 41 -46.763 -20.979 20.334 1.00 0.00 C ATOM 344 O GLY 41 -47.149 -21.991 19.750 1.00 0.00 O ATOM 345 N LYS 42 -45.504 -20.847 20.787 1.00 0.00 N ATOM 346 CA LYS 42 -44.532 -21.887 20.623 1.00 0.00 C ATOM 347 CB LYS 42 -43.454 -21.432 19.634 1.00 0.00 C ATOM 348 CG LYS 42 -44.140 -21.098 18.306 1.00 0.00 C ATOM 349 CD LYS 42 -43.368 -20.167 17.382 1.00 0.00 C ATOM 350 CE LYS 42 -44.140 -19.784 16.120 1.00 0.00 C ATOM 351 NZ LYS 42 -45.096 -18.703 16.440 1.00 0.00 N ATOM 352 C LYS 42 -43.976 -22.119 21.992 1.00 0.00 C ATOM 353 O LYS 42 -43.349 -21.242 22.587 1.00 0.00 O ATOM 354 N PRO 43 -44.220 -23.282 22.530 1.00 0.00 N ATOM 355 CA PRO 43 -43.869 -23.579 23.887 1.00 0.00 C ATOM 356 CD PRO 43 -44.514 -24.481 21.758 1.00 0.00 C ATOM 357 CB PRO 43 -44.339 -25.015 24.120 1.00 0.00 C ATOM 358 CG PRO 43 -44.226 -25.650 22.721 1.00 0.00 C ATOM 359 C PRO 43 -42.414 -23.439 24.195 1.00 0.00 C ATOM 360 O PRO 43 -41.586 -23.955 23.444 1.00 0.00 O ATOM 361 N VAL 44 -42.081 -22.732 25.294 1.00 0.00 N ATOM 362 CA VAL 44 -40.737 -22.810 25.779 1.00 0.00 C ATOM 363 CB VAL 44 -40.386 -21.857 26.888 1.00 0.00 C ATOM 364 CG1 VAL 44 -39.020 -22.275 27.458 1.00 0.00 C ATOM 365 CG2 VAL 44 -40.358 -20.428 26.330 1.00 0.00 C ATOM 366 C VAL 44 -40.675 -24.189 26.344 1.00 0.00 C ATOM 367 O VAL 44 -41.546 -24.586 27.116 1.00 0.00 O ATOM 368 N MET 45 -39.630 -24.958 25.992 1.00 0.00 N ATOM 369 CA MET 45 -39.647 -26.337 26.370 1.00 0.00 C ATOM 370 CB MET 45 -39.327 -27.292 25.208 1.00 0.00 C ATOM 371 CG MET 45 -40.462 -27.451 24.196 1.00 0.00 C ATOM 372 SD MET 45 -41.879 -28.386 24.840 1.00 0.00 S ATOM 373 CE MET 45 -42.609 -28.693 23.206 1.00 0.00 C ATOM 374 C MET 45 -38.645 -26.626 27.435 1.00 0.00 C ATOM 375 O MET 45 -37.712 -25.868 27.701 1.00 0.00 O ATOM 376 N PRO 46 -38.867 -27.772 28.026 1.00 0.00 N ATOM 377 CA PRO 46 -38.006 -28.286 29.047 1.00 0.00 C ATOM 378 CD PRO 46 -40.208 -28.326 28.108 1.00 0.00 C ATOM 379 CB PRO 46 -38.679 -29.565 29.539 1.00 0.00 C ATOM 380 CG PRO 46 -40.177 -29.297 29.303 1.00 0.00 C ATOM 381 C PRO 46 -36.670 -28.492 28.413 1.00 0.00 C ATOM 382 O PRO 46 -36.591 -28.581 27.191 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 49.81 70.6 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 43.45 76.5 34 100.0 34 ARMSMC SURFACE . . . . . . . . 48.75 73.2 56 100.0 56 ARMSMC BURIED . . . . . . . . 54.47 58.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.64 53.1 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 76.22 48.3 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 74.29 58.8 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 77.22 48.1 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 39.65 80.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.46 52.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 56.35 52.4 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 51.42 61.5 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 60.90 54.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 65.46 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.92 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 73.66 57.1 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 84.04 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 68.92 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.51 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 87.51 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 92.75 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 87.51 50.0 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.32 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.32 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.0663 CRMSCA SECONDARY STRUCTURE . . 1.40 17 100.0 17 CRMSCA SURFACE . . . . . . . . 2.50 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.11 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.42 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 1.50 85 100.0 85 CRMSMC SURFACE . . . . . . . . 2.59 143 100.0 143 CRMSMC BURIED . . . . . . . . 1.38 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.39 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 3.35 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 2.31 84 100.0 84 CRMSSC SURFACE . . . . . . . . 3.59 127 100.0 127 CRMSSC BURIED . . . . . . . . 2.35 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.96 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 1.99 152 100.0 152 CRMSALL SURFACE . . . . . . . . 3.14 243 100.0 243 CRMSALL BURIED . . . . . . . . 1.95 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.919 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 1.311 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 2.098 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 1.057 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.993 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 1.362 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 2.148 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 1.258 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.919 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 2.857 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 2.119 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 3.078 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 2.222 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.466 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 1.774 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 2.621 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 1.758 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 7 22 28 34 35 35 35 DISTCA CA (P) 20.00 62.86 80.00 97.14 100.00 35 DISTCA CA (RMS) 0.70 1.21 1.56 2.00 2.32 DISTCA ALL (N) 38 142 217 274 296 296 296 DISTALL ALL (P) 12.84 47.97 73.31 92.57 100.00 296 DISTALL ALL (RMS) 0.70 1.34 1.85 2.36 2.96 DISTALL END of the results output