####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS056_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS056_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 30 - 46 4.74 13.11 LCS_AVERAGE: 46.37 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 35 - 44 1.81 15.85 LONGEST_CONTINUOUS_SEGMENT: 10 36 - 45 1.73 14.95 LCS_AVERAGE: 21.22 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 29 - 34 0.63 12.11 LONGEST_CONTINUOUS_SEGMENT: 6 35 - 40 0.85 16.05 LONGEST_CONTINUOUS_SEGMENT: 6 36 - 41 0.77 14.48 LCS_AVERAGE: 14.04 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 5 7 13 4 5 6 7 8 8 9 10 11 11 14 15 16 18 19 19 21 21 21 22 LCS_GDT F 13 F 13 5 7 13 4 5 6 7 8 8 9 10 11 11 14 15 16 18 19 19 21 21 21 23 LCS_GDT H 14 H 14 5 7 13 4 5 6 7 8 8 9 10 11 11 14 15 16 18 19 19 21 21 22 23 LCS_GDT Y 15 Y 15 5 7 16 4 5 6 7 8 9 10 11 11 12 14 15 17 18 20 22 25 27 28 28 LCS_GDT T 16 T 16 5 7 16 3 5 6 7 9 10 10 11 12 12 15 16 17 19 23 25 26 27 28 28 LCS_GDT V 17 V 17 5 7 16 3 5 5 7 7 8 12 12 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT T 18 T 18 5 7 16 4 5 6 6 8 8 9 11 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT D 19 D 19 5 5 16 4 5 6 6 7 9 10 11 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT I 20 I 20 5 5 16 4 5 6 6 7 9 10 11 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT K 21 K 21 5 5 16 4 5 6 7 8 8 9 10 11 12 14 16 20 21 24 25 26 27 28 28 LCS_GDT D 22 D 22 4 4 16 3 4 4 4 4 5 6 9 10 12 14 18 20 22 24 25 26 27 28 28 LCS_GDT L 23 L 23 4 4 16 3 4 4 6 6 9 10 11 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT T 24 T 24 3 4 16 3 3 4 4 4 6 8 11 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT K 25 K 25 3 5 16 1 3 3 4 5 6 7 9 10 12 15 18 20 22 24 25 26 27 28 28 LCS_GDT L 26 L 26 4 5 16 0 3 4 4 5 6 7 9 10 12 13 16 17 20 23 25 26 27 28 28 LCS_GDT G 27 G 27 4 5 16 3 3 4 4 5 6 7 9 10 12 15 18 20 22 24 25 26 27 28 28 LCS_GDT A 28 A 28 4 7 16 3 3 4 4 6 7 10 11 12 12 15 18 20 22 24 25 26 27 28 28 LCS_GDT I 29 I 29 6 8 16 3 6 6 7 9 10 12 12 12 13 16 18 20 22 24 25 26 27 28 28 LCS_GDT Y 30 Y 30 6 8 17 3 6 6 7 9 10 12 12 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT D 31 D 31 6 8 17 3 6 6 7 9 10 12 12 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT K 32 K 32 6 8 17 3 6 6 7 9 10 12 12 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT T 33 T 33 6 8 17 4 6 6 7 9 10 12 12 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT K 34 K 34 6 8 17 4 6 6 7 9 10 12 12 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT K 35 K 35 6 10 17 4 4 7 8 9 10 12 12 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT Y 36 Y 36 6 10 17 6 6 7 8 9 10 12 12 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT W 37 W 37 6 10 17 6 6 7 8 9 10 11 11 12 14 15 17 19 22 24 25 26 27 28 28 LCS_GDT V 38 V 38 6 10 17 6 6 7 8 9 10 11 11 12 14 15 16 19 19 21 23 26 26 28 28 LCS_GDT Y 39 Y 39 6 10 17 6 6 7 8 9 10 11 11 12 14 15 16 19 19 21 23 25 25 27 28 LCS_GDT Q 40 Q 40 6 10 17 6 6 7 8 9 10 11 11 12 14 15 16 19 19 21 22 25 25 27 28 LCS_GDT G 41 G 41 6 10 17 3 5 6 8 9 10 11 11 12 14 15 16 19 19 21 23 25 25 27 28 LCS_GDT K 42 K 42 4 10 17 3 5 7 8 9 10 11 11 12 14 15 17 19 21 24 25 26 27 28 28 LCS_GDT P 43 P 43 4 10 17 6 6 7 8 9 10 11 11 12 14 15 18 20 22 24 25 26 27 28 28 LCS_GDT V 44 V 44 4 10 17 3 4 6 7 8 10 12 12 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT M 45 M 45 3 10 17 3 4 5 8 9 10 12 12 13 14 16 18 20 22 24 25 26 27 28 28 LCS_GDT P 46 P 46 3 4 17 3 3 3 6 6 7 12 12 13 14 16 18 20 22 24 25 26 27 28 28 LCS_AVERAGE LCS_A: 27.21 ( 14.04 21.22 46.37 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 6 7 8 9 10 12 12 13 14 16 18 20 22 24 25 26 27 28 28 GDT PERCENT_AT 17.14 17.14 20.00 22.86 25.71 28.57 34.29 34.29 37.14 40.00 45.71 51.43 57.14 62.86 68.57 71.43 74.29 77.14 80.00 80.00 GDT RMS_LOCAL 0.35 0.35 0.65 0.97 1.48 1.73 2.59 2.59 3.25 3.28 3.93 4.45 4.70 5.01 5.28 5.47 5.66 5.85 6.07 6.07 GDT RMS_ALL_AT 15.63 15.63 15.45 15.93 14.96 14.95 10.87 10.87 10.13 15.31 9.79 9.87 9.82 9.64 9.74 9.59 9.63 9.60 9.54 9.54 # Checking swapping # possible swapping detected: Y 15 Y 15 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 24.964 0 0.613 0.851 27.046 0.000 0.000 LGA F 13 F 13 18.696 0 0.035 1.075 21.470 0.000 0.000 LGA H 14 H 14 15.462 0 0.098 1.277 19.123 0.000 0.000 LGA Y 15 Y 15 8.423 0 0.109 0.746 10.904 4.881 5.000 LGA T 16 T 16 5.434 0 0.135 0.235 9.940 37.619 23.673 LGA V 17 V 17 3.191 0 0.559 0.606 6.779 37.619 36.054 LGA T 18 T 18 7.860 0 0.038 0.159 11.021 7.500 7.755 LGA D 19 D 19 11.252 0 0.043 0.142 13.204 0.119 0.060 LGA I 20 I 20 10.595 0 0.700 0.681 10.950 0.000 1.429 LGA K 21 K 21 12.820 0 0.084 1.430 22.029 0.000 0.000 LGA D 22 D 22 11.648 0 0.647 1.002 13.525 0.000 0.000 LGA L 23 L 23 10.976 0 0.554 1.233 14.478 0.000 0.000 LGA T 24 T 24 8.331 0 0.622 0.963 12.133 1.548 10.000 LGA K 25 K 25 13.109 0 0.689 1.082 17.098 0.000 0.000 LGA L 26 L 26 15.462 0 0.656 1.459 21.193 0.000 0.000 LGA G 27 G 27 11.603 0 0.687 0.687 12.724 1.548 1.548 LGA A 28 A 28 7.660 0 0.119 0.154 9.298 10.833 9.619 LGA I 29 I 29 3.049 0 0.576 1.660 4.041 46.905 49.524 LGA Y 30 Y 30 2.145 0 0.056 0.222 3.341 70.952 60.595 LGA D 31 D 31 1.530 0 0.169 0.885 4.237 75.000 62.738 LGA K 32 K 32 0.902 0 0.539 1.225 6.412 79.881 63.915 LGA T 33 T 33 2.130 0 0.251 0.639 2.654 70.833 67.143 LGA K 34 K 34 2.142 0 0.685 0.961 3.721 59.405 60.688 LGA K 35 K 35 2.562 0 0.633 0.475 3.361 57.262 54.815 LGA Y 36 Y 36 2.997 0 0.107 1.363 7.006 35.833 30.794 LGA W 37 W 37 7.585 0 0.112 0.256 15.617 12.024 4.218 LGA V 38 V 38 11.719 0 0.101 1.213 15.121 0.000 0.000 LGA Y 39 Y 39 14.229 0 0.231 1.123 16.401 0.000 0.000 LGA Q 40 Q 40 19.058 0 0.366 0.323 21.260 0.000 0.000 LGA G 41 G 41 18.130 0 0.600 0.600 18.130 0.000 0.000 LGA K 42 K 42 12.877 0 0.033 0.573 14.769 0.000 0.000 LGA P 43 P 43 9.439 0 0.130 0.319 13.439 6.190 3.537 LGA V 44 V 44 2.797 0 0.276 1.137 4.817 54.524 64.014 LGA M 45 M 45 3.207 0 0.170 0.704 8.308 53.571 34.881 LGA P 46 P 46 3.246 0 0.124 0.148 4.912 45.833 49.796 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 9.237 9.126 10.394 21.997 20.051 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 12 2.59 36.429 32.286 0.446 LGA_LOCAL RMSD: 2.591 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.865 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 9.237 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.020615 * X + -0.322839 * Y + -0.946229 * Z + -48.688084 Y_new = 0.898251 * X + -0.421551 * Y + 0.124257 * Z + -22.080368 Z_new = -0.438999 * X + -0.847390 * Y + 0.298681 * Z + 12.307524 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.593742 0.454484 -1.231921 [DEG: 91.3147 26.0400 -70.5839 ] ZXZ: -1.701367 1.267486 -2.663602 [DEG: -97.4812 72.6216 -152.6131 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS056_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS056_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 12 2.59 32.286 9.24 REMARK ---------------------------------------------------------- MOLECULE T0548TS056_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 87 N HIS 12 -48.884 -6.858 26.853 1.00 0.00 N ATOM 88 CA HIS 12 -49.666 -6.599 28.027 1.00 0.00 C ATOM 89 C HIS 12 -49.281 -7.490 29.157 1.00 0.00 C ATOM 90 O HIS 12 -49.274 -7.040 30.303 1.00 0.00 O ATOM 91 CB HIS 12 -51.152 -6.825 27.741 1.00 0.00 C ATOM 92 CG HIS 12 -52.039 -6.572 28.921 1.00 0.00 C ATOM 93 ND1 HIS 12 -52.296 -5.307 29.401 1.00 0.00 N ATOM 94 CD2 HIS 12 -52.815 -7.400 29.833 1.00 0.00 C ATOM 95 CE1 HIS 12 -53.121 -5.400 30.460 1.00 0.00 C ATOM 96 NE2 HIS 12 -53.436 -6.653 30.724 1.00 0.00 N ATOM 97 N PHE 13 -48.953 -8.769 28.894 1.00 0.00 N ATOM 98 CA PHE 13 -48.711 -9.616 30.023 1.00 0.00 C ATOM 99 C PHE 13 -47.275 -9.664 30.379 1.00 0.00 C ATOM 100 O PHE 13 -46.391 -9.787 29.534 1.00 0.00 O ATOM 101 CB PHE 13 -49.165 -11.048 29.727 1.00 0.00 C ATOM 102 CG PHE 13 -50.655 -11.199 29.619 1.00 0.00 C ATOM 103 CD1 PHE 13 -51.275 -11.218 28.382 1.00 0.00 C ATOM 104 CD2 PHE 13 -51.437 -11.326 30.754 1.00 0.00 C ATOM 105 CE1 PHE 13 -52.648 -11.358 28.282 1.00 0.00 C ATOM 106 CE2 PHE 13 -52.809 -11.466 30.654 1.00 0.00 C ATOM 107 CZ PHE 13 -53.414 -11.483 29.425 1.00 0.00 C ATOM 108 N HIS 14 -47.010 -9.575 31.690 1.00 0.00 N ATOM 109 CA HIS 14 -45.654 -9.592 32.115 1.00 0.00 C ATOM 110 C HIS 14 -45.338 -11.003 32.455 1.00 0.00 C ATOM 111 O HIS 14 -46.116 -11.685 33.114 1.00 0.00 O ATOM 112 CB HIS 14 -45.465 -8.691 33.338 1.00 0.00 C ATOM 113 CG HIS 14 -45.749 -7.245 33.073 1.00 0.00 C ATOM 114 ND1 HIS 14 -44.877 -6.427 32.389 1.00 0.00 N ATOM 115 CD2 HIS 14 -46.841 -6.330 33.375 1.00 0.00 C ATOM 116 CE1 HIS 14 -45.405 -5.192 32.310 1.00 0.00 C ATOM 117 NE2 HIS 14 -46.583 -5.127 32.899 1.00 0.00 N ATOM 118 N TYR 15 -44.184 -11.491 31.976 1.00 0.00 N ATOM 119 CA TYR 15 -43.793 -12.813 32.320 1.00 0.00 C ATOM 120 C TYR 15 -42.659 -12.598 33.259 1.00 0.00 C ATOM 121 O TYR 15 -41.727 -11.858 32.947 1.00 0.00 O ATOM 122 CB TYR 15 -43.367 -13.587 31.071 1.00 0.00 C ATOM 123 CG TYR 15 -44.498 -13.862 30.105 1.00 0.00 C ATOM 124 CD1 TYR 15 -44.780 -12.979 29.070 1.00 0.00 C ATOM 125 CD2 TYR 15 -45.279 -15.004 30.231 1.00 0.00 C ATOM 126 CE1 TYR 15 -45.812 -13.221 28.183 1.00 0.00 C ATOM 127 CE2 TYR 15 -46.314 -15.263 29.353 1.00 0.00 C ATOM 128 CZ TYR 15 -46.577 -14.359 28.323 1.00 0.00 C ATOM 129 OH TYR 15 -47.604 -14.604 27.441 1.00 0.00 H ATOM 130 N THR 16 -42.720 -13.197 34.461 1.00 0.00 N ATOM 131 CA THR 16 -41.664 -12.916 35.385 1.00 0.00 C ATOM 132 C THR 16 -41.421 -14.137 36.221 1.00 0.00 C ATOM 133 O THR 16 -41.647 -15.267 35.788 1.00 0.00 O ATOM 134 CB THR 16 -42.023 -11.740 36.311 1.00 0.00 C ATOM 135 OG1 THR 16 -43.139 -12.101 37.135 1.00 0.00 O ATOM 136 CG2 THR 16 -42.391 -10.511 35.495 1.00 0.00 C ATOM 137 N VAL 17 -40.944 -13.875 37.453 1.00 0.00 N ATOM 138 CA VAL 17 -40.562 -14.701 38.563 1.00 0.00 C ATOM 139 C VAL 17 -40.405 -16.151 38.259 1.00 0.00 C ATOM 140 O VAL 17 -41.293 -16.827 37.750 1.00 0.00 O ATOM 141 CB VAL 17 -41.601 -14.637 39.698 1.00 0.00 C ATOM 142 CG1 VAL 17 -41.222 -15.589 40.822 1.00 0.00 C ATOM 143 CG2 VAL 17 -41.681 -13.229 40.268 1.00 0.00 C ATOM 144 N THR 18 -39.192 -16.640 38.580 1.00 0.00 N ATOM 145 CA THR 18 -38.740 -17.984 38.386 1.00 0.00 C ATOM 146 C THR 18 -39.344 -19.007 39.309 1.00 0.00 C ATOM 147 O THR 18 -39.826 -20.035 38.839 1.00 0.00 O ATOM 148 CB THR 18 -37.218 -18.102 38.590 1.00 0.00 C ATOM 149 OG1 THR 18 -36.539 -17.291 37.624 1.00 0.00 O ATOM 150 CG2 THR 18 -36.769 -19.546 38.423 1.00 0.00 C ATOM 151 N ASP 19 -39.329 -18.773 40.645 1.00 0.00 N ATOM 152 CA ASP 19 -39.756 -19.834 41.525 1.00 0.00 C ATOM 153 C ASP 19 -41.168 -20.171 41.233 1.00 0.00 C ATOM 154 O ASP 19 -41.476 -21.334 40.976 1.00 0.00 O ATOM 155 CB ASP 19 -39.638 -19.399 42.987 1.00 0.00 C ATOM 156 CG ASP 19 -38.199 -19.326 43.458 1.00 0.00 C ATOM 157 OD1 ASP 19 -37.312 -19.835 42.741 1.00 0.00 O ATOM 158 OD2 ASP 19 -37.957 -18.759 44.545 1.00 0.00 O ATOM 159 N ILE 20 -42.062 -19.167 41.261 1.00 0.00 N ATOM 160 CA ILE 20 -43.357 -19.467 40.753 1.00 0.00 C ATOM 161 C ILE 20 -42.959 -19.693 39.349 1.00 0.00 C ATOM 162 O ILE 20 -42.106 -18.957 38.870 1.00 0.00 O ATOM 163 CB ILE 20 -44.330 -18.293 40.960 1.00 0.00 C ATOM 164 CG1 ILE 20 -44.561 -18.047 42.453 1.00 0.00 C ATOM 165 CG2 ILE 20 -45.672 -18.591 40.308 1.00 0.00 C ATOM 166 CD1 ILE 20 -45.297 -16.760 42.754 1.00 0.00 C ATOM 167 N LYS 21 -43.503 -20.730 38.680 1.00 0.00 N ATOM 168 CA LYS 21 -42.967 -21.036 37.382 1.00 0.00 C ATOM 169 C LYS 21 -43.083 -19.849 36.501 1.00 0.00 C ATOM 170 O LYS 21 -42.085 -19.327 36.011 1.00 0.00 O ATOM 171 CB LYS 21 -43.733 -22.200 36.748 1.00 0.00 C ATOM 172 CG LYS 21 -43.644 -23.500 37.530 1.00 0.00 C ATOM 173 CD LYS 21 -44.334 -24.636 36.792 1.00 0.00 C ATOM 174 CE LYS 21 -45.838 -24.425 36.735 1.00 0.00 C ATOM 175 NZ LYS 21 -46.445 -24.390 38.094 1.00 0.00 N ATOM 176 N ASP 22 -44.291 -19.320 36.325 1.00 0.00 N ATOM 177 CA ASP 22 -44.310 -18.139 35.539 1.00 0.00 C ATOM 178 C ASP 22 -45.170 -17.214 36.318 1.00 0.00 C ATOM 179 O ASP 22 -46.348 -17.491 36.527 1.00 0.00 O ATOM 180 CB ASP 22 -44.892 -18.426 34.153 1.00 0.00 C ATOM 181 CG ASP 22 -44.768 -17.243 33.212 1.00 0.00 C ATOM 182 OD1 ASP 22 -45.218 -16.139 33.585 1.00 0.00 O ATOM 183 OD2 ASP 22 -44.222 -17.421 32.104 1.00 0.00 O ATOM 184 N LEU 23 -44.598 -16.105 36.813 1.00 0.00 N ATOM 185 CA LEU 23 -45.424 -15.213 37.569 1.00 0.00 C ATOM 186 C LEU 23 -46.019 -14.309 36.551 1.00 0.00 C ATOM 187 O LEU 23 -45.587 -13.171 36.369 1.00 0.00 O ATOM 188 CB LEU 23 -44.584 -14.437 38.586 1.00 0.00 C ATOM 189 CG LEU 23 -45.358 -13.602 39.608 1.00 0.00 C ATOM 190 CD1 LEU 23 -46.204 -14.496 40.501 1.00 0.00 C ATOM 191 CD2 LEU 23 -44.403 -12.814 40.492 1.00 0.00 C ATOM 192 N THR 24 -47.053 -14.807 35.852 1.00 0.00 N ATOM 193 CA THR 24 -47.605 -13.999 34.817 1.00 0.00 C ATOM 194 C THR 24 -49.076 -13.931 34.992 1.00 0.00 C ATOM 195 O THR 24 -49.704 -14.829 35.553 1.00 0.00 O ATOM 196 CB THR 24 -47.300 -14.579 33.424 1.00 0.00 C ATOM 197 OG1 THR 24 -45.882 -14.702 33.255 1.00 0.00 O ATOM 198 CG2 THR 24 -47.849 -13.669 32.336 1.00 0.00 C ATOM 199 N LYS 25 -49.641 -12.815 34.504 1.00 0.00 N ATOM 200 CA LYS 25 -51.055 -12.617 34.514 1.00 0.00 C ATOM 201 C LYS 25 -51.602 -13.522 33.464 1.00 0.00 C ATOM 202 O LYS 25 -50.898 -13.888 32.523 1.00 0.00 O ATOM 203 CB LYS 25 -51.393 -11.157 34.201 1.00 0.00 C ATOM 204 CG LYS 25 -50.950 -10.175 35.274 1.00 0.00 C ATOM 205 CD LYS 25 -51.299 -8.745 34.891 1.00 0.00 C ATOM 206 CE LYS 25 -50.920 -7.770 35.993 1.00 0.00 C ATOM 207 NZ LYS 25 -51.248 -6.365 35.628 1.00 0.00 N ATOM 208 N LEU 26 -52.886 -13.899 33.606 1.00 0.00 N ATOM 209 CA LEU 26 -53.450 -14.902 32.753 1.00 0.00 C ATOM 210 C LEU 26 -54.152 -14.303 31.583 1.00 0.00 C ATOM 211 O LEU 26 -54.686 -13.195 31.647 1.00 0.00 O ATOM 212 CB LEU 26 -54.467 -15.749 33.522 1.00 0.00 C ATOM 213 CG LEU 26 -53.929 -16.526 34.725 1.00 0.00 C ATOM 214 CD1 LEU 26 -55.057 -17.252 35.443 1.00 0.00 C ATOM 215 CD2 LEU 26 -52.903 -17.559 34.284 1.00 0.00 C ATOM 216 N GLY 27 -54.159 -15.069 30.470 1.00 0.00 N ATOM 217 CA GLY 27 -54.819 -14.695 29.257 1.00 0.00 C ATOM 218 C GLY 27 -53.775 -14.620 28.198 1.00 0.00 C ATOM 219 O GLY 27 -52.605 -14.911 28.439 1.00 0.00 O ATOM 220 N ALA 28 -54.185 -14.257 26.968 1.00 0.00 N ATOM 221 CA ALA 28 -53.191 -14.082 25.957 1.00 0.00 C ATOM 222 C ALA 28 -52.673 -15.427 25.561 1.00 0.00 C ATOM 223 O ALA 28 -53.216 -16.460 25.946 1.00 0.00 O ATOM 224 CB ALA 28 -52.044 -13.232 26.481 1.00 0.00 C ATOM 225 N ILE 29 -51.606 -15.428 24.740 1.00 0.00 N ATOM 226 CA ILE 29 -51.029 -16.626 24.204 1.00 0.00 C ATOM 227 C ILE 29 -50.525 -17.488 25.329 1.00 0.00 C ATOM 228 O ILE 29 -50.832 -18.678 25.360 1.00 0.00 O ATOM 229 CB ILE 29 -49.849 -16.313 23.265 1.00 0.00 C ATOM 230 CG1 ILE 29 -50.332 -15.530 22.044 1.00 0.00 C ATOM 231 CG2 ILE 29 -49.195 -17.599 22.785 1.00 0.00 C ATOM 232 CD1 ILE 29 -51.330 -16.283 21.190 1.00 0.00 C ATOM 233 N TYR 30 -49.782 -16.909 26.299 1.00 0.00 N ATOM 234 CA TYR 30 -49.277 -17.647 27.431 1.00 0.00 C ATOM 235 C TYR 30 -50.431 -18.382 28.042 1.00 0.00 C ATOM 236 O TYR 30 -51.334 -17.789 28.619 1.00 0.00 O ATOM 237 CB TYR 30 -48.660 -16.697 28.459 1.00 0.00 C ATOM 238 CG TYR 30 -48.045 -17.398 29.649 1.00 0.00 C ATOM 239 CD1 TYR 30 -46.859 -18.108 29.521 1.00 0.00 C ATOM 240 CD2 TYR 30 -48.653 -17.346 30.897 1.00 0.00 C ATOM 241 CE1 TYR 30 -46.289 -18.751 30.604 1.00 0.00 C ATOM 242 CE2 TYR 30 -48.098 -17.983 31.991 1.00 0.00 C ATOM 243 CZ TYR 30 -46.906 -18.690 31.834 1.00 0.00 C ATOM 244 OH TYR 30 -46.341 -19.329 32.914 1.00 0.00 H ATOM 245 N ASP 31 -50.434 -19.724 27.962 1.00 0.00 N ATOM 246 CA ASP 31 -51.584 -20.393 28.488 1.00 0.00 C ATOM 247 C ASP 31 -51.239 -21.012 29.795 1.00 0.00 C ATOM 248 O ASP 31 -50.183 -21.617 29.962 1.00 0.00 O ATOM 249 CB ASP 31 -52.055 -21.487 27.527 1.00 0.00 C ATOM 250 CG ASP 31 -52.565 -20.928 26.212 1.00 0.00 C ATOM 251 OD1 ASP 31 -53.409 -20.007 26.247 1.00 0.00 O ATOM 252 OD2 ASP 31 -52.121 -21.410 25.150 1.00 0.00 O ATOM 253 N LYS 32 -52.163 -20.865 30.759 1.00 0.00 N ATOM 254 CA LYS 32 -52.015 -21.336 32.100 1.00 0.00 C ATOM 255 C LYS 32 -52.119 -22.823 32.124 1.00 0.00 C ATOM 256 O LYS 32 -52.462 -23.455 31.126 1.00 0.00 O ATOM 257 CB LYS 32 -53.107 -20.749 32.997 1.00 0.00 C ATOM 258 CG LYS 32 -54.511 -21.219 32.654 1.00 0.00 C ATOM 259 CD LYS 32 -55.550 -20.534 33.526 1.00 0.00 C ATOM 260 CE LYS 32 -56.949 -21.040 33.218 1.00 0.00 C ATOM 261 NZ LYS 32 -57.972 -20.419 34.105 1.00 0.00 N ATOM 262 N THR 33 -51.771 -23.391 33.300 1.00 0.00 N ATOM 263 CA THR 33 -51.728 -24.792 33.619 1.00 0.00 C ATOM 264 C THR 33 -50.730 -25.427 32.717 1.00 0.00 C ATOM 265 O THR 33 -50.755 -26.631 32.460 1.00 0.00 O ATOM 266 CB THR 33 -53.101 -25.460 33.414 1.00 0.00 C ATOM 267 OG1 THR 33 -53.500 -25.330 32.044 1.00 0.00 O ATOM 268 CG2 THR 33 -54.150 -24.801 34.296 1.00 0.00 C ATOM 269 N LYS 34 -49.787 -24.599 32.242 1.00 0.00 N ATOM 270 CA LYS 34 -48.759 -25.061 31.374 1.00 0.00 C ATOM 271 C LYS 34 -47.521 -24.526 31.982 1.00 0.00 C ATOM 272 O LYS 34 -47.453 -23.337 32.289 1.00 0.00 O ATOM 273 CB LYS 34 -48.974 -24.526 29.956 1.00 0.00 C ATOM 274 CG LYS 34 -50.285 -24.961 29.321 1.00 0.00 C ATOM 275 CD LYS 34 -50.274 -26.445 28.991 1.00 0.00 C ATOM 276 CE LYS 34 -51.564 -26.869 28.310 1.00 0.00 C ATOM 277 NZ LYS 34 -51.607 -28.338 28.065 1.00 0.00 N ATOM 278 N LYS 35 -46.516 -25.397 32.178 1.00 0.00 N ATOM 279 CA LYS 35 -45.357 -24.980 32.900 1.00 0.00 C ATOM 280 C LYS 35 -44.413 -24.289 31.975 1.00 0.00 C ATOM 281 O LYS 35 -44.034 -24.813 30.928 1.00 0.00 O ATOM 282 CB LYS 35 -44.648 -26.186 33.520 1.00 0.00 C ATOM 283 CG LYS 35 -45.439 -26.869 34.625 1.00 0.00 C ATOM 284 CD LYS 35 -44.676 -28.054 35.195 1.00 0.00 C ATOM 285 CE LYS 35 -45.480 -28.756 36.278 1.00 0.00 C ATOM 286 NZ LYS 35 -44.748 -29.924 36.844 1.00 0.00 N ATOM 287 N TYR 36 -44.021 -23.062 32.368 1.00 0.00 N ATOM 288 CA TYR 36 -43.100 -22.288 31.605 1.00 0.00 C ATOM 289 C TYR 36 -41.863 -22.107 32.410 1.00 0.00 C ATOM 290 O TYR 36 -41.930 -21.769 33.589 1.00 0.00 O ATOM 291 CB TYR 36 -43.698 -20.920 31.270 1.00 0.00 C ATOM 292 CG TYR 36 -44.900 -20.984 30.356 1.00 0.00 C ATOM 293 CD1 TYR 36 -46.185 -21.073 30.876 1.00 0.00 C ATOM 294 CD2 TYR 36 -44.746 -20.955 28.975 1.00 0.00 C ATOM 295 CE1 TYR 36 -47.289 -21.132 30.048 1.00 0.00 C ATOM 296 CE2 TYR 36 -45.840 -21.013 28.132 1.00 0.00 C ATOM 297 CZ TYR 36 -47.118 -21.103 28.680 1.00 0.00 C ATOM 298 OH TYR 36 -48.216 -21.162 27.853 1.00 0.00 H ATOM 299 N TRP 37 -40.697 -22.333 31.779 1.00 0.00 N ATOM 300 CA TRP 37 -39.439 -22.171 32.446 1.00 0.00 C ATOM 301 C TRP 37 -38.812 -20.942 31.879 1.00 0.00 C ATOM 302 O TRP 37 -39.332 -20.340 30.941 1.00 0.00 O ATOM 303 CB TRP 37 -38.543 -23.388 32.204 1.00 0.00 C ATOM 304 CG TRP 37 -39.110 -24.666 32.742 1.00 0.00 C ATOM 305 CD1 TRP 37 -39.955 -25.522 32.098 1.00 0.00 C ATOM 306 CD2 TRP 37 -38.871 -25.233 34.036 1.00 0.00 C ATOM 307 NE1 TRP 37 -40.259 -26.589 32.910 1.00 0.00 N ATOM 308 CE2 TRP 37 -39.605 -26.433 34.107 1.00 0.00 C ATOM 309 CE3 TRP 37 -38.109 -24.843 35.142 1.00 0.00 C ATOM 310 CZ2 TRP 37 -39.599 -27.247 35.239 1.00 0.00 C ATOM 311 CZ3 TRP 37 -38.107 -25.653 36.262 1.00 0.00 C ATOM 312 CH2 TRP 37 -38.845 -26.841 36.305 1.00 0.00 H ATOM 313 N VAL 38 -37.688 -20.497 32.466 1.00 0.00 N ATOM 314 CA VAL 38 -37.080 -19.323 31.922 1.00 0.00 C ATOM 315 C VAL 38 -35.625 -19.570 31.746 1.00 0.00 C ATOM 316 O VAL 38 -35.047 -20.504 32.302 1.00 0.00 O ATOM 317 CB VAL 38 -37.267 -18.109 32.850 1.00 0.00 C ATOM 318 CG1 VAL 38 -38.744 -17.785 33.014 1.00 0.00 C ATOM 319 CG2 VAL 38 -36.682 -18.394 34.225 1.00 0.00 C ATOM 320 N TYR 39 -35.014 -18.719 30.913 1.00 0.00 N ATOM 321 CA TYR 39 -33.619 -18.750 30.626 1.00 0.00 C ATOM 322 C TYR 39 -33.236 -17.328 30.830 1.00 0.00 C ATOM 323 O TYR 39 -34.079 -16.517 31.213 1.00 0.00 O ATOM 324 CB TYR 39 -33.378 -19.229 29.194 1.00 0.00 C ATOM 325 CG TYR 39 -33.892 -20.625 28.919 1.00 0.00 C ATOM 326 CD1 TYR 39 -35.167 -20.825 28.408 1.00 0.00 C ATOM 327 CD2 TYR 39 -33.099 -21.736 29.172 1.00 0.00 C ATOM 328 CE1 TYR 39 -35.645 -22.096 28.155 1.00 0.00 C ATOM 329 CE2 TYR 39 -33.560 -23.016 28.925 1.00 0.00 C ATOM 330 CZ TYR 39 -34.844 -23.188 28.412 1.00 0.00 C ATOM 331 OH TYR 39 -35.319 -24.455 28.160 1.00 0.00 H ATOM 332 N GLN 40 -31.964 -16.985 30.587 1.00 0.00 N ATOM 333 CA GLN 40 -31.517 -15.644 30.793 1.00 0.00 C ATOM 334 C GLN 40 -32.384 -14.788 29.944 1.00 0.00 C ATOM 335 O GLN 40 -32.726 -13.662 30.297 1.00 0.00 O ATOM 336 CB GLN 40 -30.049 -15.500 30.385 1.00 0.00 C ATOM 337 CG GLN 40 -29.074 -16.198 31.318 1.00 0.00 C ATOM 338 CD GLN 40 -27.638 -16.099 30.841 1.00 0.00 C ATOM 339 OE1 GLN 40 -27.364 -15.538 29.780 1.00 0.00 O ATOM 340 NE2 GLN 40 -26.717 -16.645 31.625 1.00 0.00 N ATOM 341 N GLY 41 -32.792 -15.333 28.797 1.00 0.00 N ATOM 342 CA GLY 41 -33.580 -14.555 27.912 1.00 0.00 C ATOM 343 C GLY 41 -35.004 -14.763 28.257 1.00 0.00 C ATOM 344 O GLY 41 -35.465 -14.410 29.340 1.00 0.00 O ATOM 345 N LYS 42 -35.727 -15.335 27.291 1.00 0.00 N ATOM 346 CA LYS 42 -37.142 -15.470 27.298 1.00 0.00 C ATOM 347 C LYS 42 -37.591 -16.657 28.076 1.00 0.00 C ATOM 348 O LYS 42 -36.918 -17.674 28.215 1.00 0.00 O ATOM 349 CB LYS 42 -37.672 -15.626 25.871 1.00 0.00 C ATOM 350 CG LYS 42 -37.512 -14.385 25.010 1.00 0.00 C ATOM 351 CD LYS 42 -38.076 -14.604 23.615 1.00 0.00 C ATOM 352 CE LYS 42 -37.931 -13.357 22.759 1.00 0.00 C ATOM 353 NZ LYS 42 -38.466 -13.561 21.385 1.00 0.00 N ATOM 354 N PRO 43 -38.734 -16.465 28.657 1.00 0.00 N ATOM 355 CA PRO 43 -39.374 -17.557 29.328 1.00 0.00 C ATOM 356 C PRO 43 -40.121 -18.297 28.276 1.00 0.00 C ATOM 357 O PRO 43 -40.250 -17.764 27.177 1.00 0.00 O ATOM 358 CB PRO 43 -40.279 -16.878 30.359 1.00 0.00 C ATOM 359 CG PRO 43 -40.666 -15.586 29.724 1.00 0.00 C ATOM 360 CD PRO 43 -39.454 -15.113 28.969 1.00 0.00 C ATOM 361 N VAL 44 -40.579 -19.518 28.601 1.00 0.00 N ATOM 362 CA VAL 44 -41.352 -20.410 27.782 1.00 0.00 C ATOM 363 C VAL 44 -40.886 -21.753 28.161 1.00 0.00 C ATOM 364 O VAL 44 -40.292 -21.928 29.222 1.00 0.00 O ATOM 365 CB VAL 44 -41.118 -20.146 26.283 1.00 0.00 C ATOM 366 CG1 VAL 44 -41.553 -18.735 25.917 1.00 0.00 C ATOM 367 CG2 VAL 44 -39.644 -20.299 25.939 1.00 0.00 C ATOM 368 N MET 45 -41.216 -22.767 27.355 1.00 0.00 N ATOM 369 CA MET 45 -40.512 -23.978 27.587 1.00 0.00 C ATOM 370 C MET 45 -39.150 -23.515 27.175 1.00 0.00 C ATOM 371 O MET 45 -39.082 -22.820 26.165 1.00 0.00 O ATOM 372 CB MET 45 -41.085 -25.105 26.724 1.00 0.00 C ATOM 373 CG MET 45 -40.489 -26.473 27.015 1.00 0.00 C ATOM 374 SD MET 45 -40.902 -27.076 28.663 1.00 0.00 S ATOM 375 CE MET 45 -42.663 -27.351 28.491 1.00 0.00 C ATOM 376 N PRO 46 -38.076 -23.811 27.865 1.00 0.00 N ATOM 377 CA PRO 46 -36.780 -23.258 27.562 1.00 0.00 C ATOM 378 C PRO 46 -36.390 -23.316 26.122 1.00 0.00 C ATOM 379 O PRO 46 -36.570 -24.348 25.479 1.00 0.00 O ATOM 380 CB PRO 46 -35.813 -24.104 28.392 1.00 0.00 C ATOM 381 CG PRO 46 -36.630 -24.583 29.545 1.00 0.00 C ATOM 382 CD PRO 46 -37.999 -24.871 28.994 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 87.36 48.5 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 84.46 55.9 34 100.0 34 ARMSMC SURFACE . . . . . . . . 90.09 46.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 73.29 58.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.83 43.8 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 78.87 44.8 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 89.94 35.3 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 79.83 44.4 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 91.91 40.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.20 52.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 63.20 57.1 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 60.16 69.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 67.82 54.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 78.59 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.70 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 79.69 57.1 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 117.88 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 74.70 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 46.88 83.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 46.88 83.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 80.81 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 46.88 83.3 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.24 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.24 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2639 CRMSCA SECONDARY STRUCTURE . . 6.98 17 100.0 17 CRMSCA SURFACE . . . . . . . . 9.59 29 100.0 29 CRMSCA BURIED . . . . . . . . 7.30 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.21 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 7.15 85 100.0 85 CRMSMC SURFACE . . . . . . . . 9.50 143 100.0 143 CRMSMC BURIED . . . . . . . . 7.69 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.58 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 10.32 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 9.50 84 100.0 84 CRMSSC SURFACE . . . . . . . . 11.96 127 100.0 127 CRMSSC BURIED . . . . . . . . 9.75 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.49 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 8.49 152 100.0 152 CRMSALL SURFACE . . . . . . . . 10.82 243 100.0 243 CRMSALL BURIED . . . . . . . . 8.87 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.926 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 6.392 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 8.130 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 6.941 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.907 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 6.585 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 8.077 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 7.096 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.908 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 8.993 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 8.492 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 10.026 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 9.388 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.927 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 7.601 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 9.063 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 8.304 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 4 11 26 35 35 DISTCA CA (P) 0.00 2.86 11.43 31.43 74.29 35 DISTCA CA (RMS) 0.00 1.89 2.65 3.71 6.19 DISTCA ALL (N) 0 6 19 78 204 296 296 DISTALL ALL (P) 0.00 2.03 6.42 26.35 68.92 296 DISTALL ALL (RMS) 0.00 1.58 2.35 3.81 6.33 DISTALL END of the results output