####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS047_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS047_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 12 - 46 2.89 2.89 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 12 - 33 1.99 3.74 LONGEST_CONTINUOUS_SEGMENT: 22 13 - 34 1.99 3.48 LCS_AVERAGE: 61.06 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 13 - 30 0.81 4.79 LONGEST_CONTINUOUS_SEGMENT: 18 29 - 46 0.87 5.11 LCS_AVERAGE: 51.27 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 16 22 35 0 3 6 16 20 21 22 25 31 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT F 13 F 13 18 22 35 2 13 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT H 14 H 14 18 22 35 8 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT Y 15 Y 15 18 22 35 8 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT T 16 T 16 18 22 35 7 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT V 17 V 17 18 22 35 7 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT T 18 T 18 18 22 35 7 16 19 21 21 24 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 19 D 19 18 22 35 7 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT I 20 I 20 18 22 35 7 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 21 K 21 18 22 35 7 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 22 D 22 18 22 35 7 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 23 L 23 18 22 35 8 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT T 24 T 24 18 22 35 7 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 25 K 25 18 22 35 7 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT L 26 L 26 18 22 35 8 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT G 27 G 27 18 22 35 8 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT A 28 A 28 18 22 35 8 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT I 29 I 29 18 22 35 8 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT Y 30 Y 30 18 22 35 11 15 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT D 31 D 31 18 22 35 11 15 17 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 32 K 32 18 22 35 11 15 17 20 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT T 33 T 33 18 22 35 5 15 17 20 21 24 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 34 K 34 18 22 35 8 15 17 20 21 24 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 35 K 35 18 21 35 7 15 17 20 21 24 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT Y 36 Y 36 18 21 35 11 15 17 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT W 37 W 37 18 20 35 11 15 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT V 38 V 38 18 20 35 11 15 17 20 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT Y 39 Y 39 18 20 35 8 15 17 20 21 24 30 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT Q 40 Q 40 18 20 35 5 8 17 20 21 21 26 28 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT G 41 G 41 18 20 35 4 15 17 20 21 21 26 28 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT K 42 K 42 18 20 35 11 15 17 20 21 24 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT P 43 P 43 18 20 35 11 15 17 20 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT V 44 V 44 18 20 35 11 15 17 20 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT M 45 M 45 18 20 35 11 15 17 20 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_GDT P 46 P 46 18 20 35 11 15 17 20 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 LCS_AVERAGE LCS_A: 70.78 ( 51.27 61.06 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 16 19 21 21 25 31 32 34 34 35 35 35 35 35 35 35 35 35 35 GDT PERCENT_AT 31.43 45.71 54.29 60.00 60.00 71.43 88.57 91.43 97.14 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.31 0.67 0.89 1.22 1.18 2.01 2.48 2.55 2.76 2.76 2.89 2.89 2.89 2.89 2.89 2.89 2.89 2.89 2.89 2.89 GDT RMS_ALL_AT 4.98 5.28 4.62 4.06 4.95 3.26 3.00 2.96 2.91 2.91 2.89 2.89 2.89 2.89 2.89 2.89 2.89 2.89 2.89 2.89 # Checking swapping # possible swapping detected: Y 30 Y 30 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 5.918 0 0.617 1.140 11.988 30.357 12.524 LGA F 13 F 13 2.583 0 0.075 0.462 3.420 55.357 59.351 LGA H 14 H 14 2.729 0 0.140 0.357 3.802 57.262 53.000 LGA Y 15 Y 15 1.373 0 0.148 0.650 3.952 77.143 64.921 LGA T 16 T 16 1.119 0 0.044 0.083 1.502 81.548 82.789 LGA V 17 V 17 2.827 0 0.030 0.192 4.687 59.048 50.612 LGA T 18 T 18 3.187 0 0.022 1.041 6.191 55.357 48.435 LGA D 19 D 19 1.652 0 0.049 0.878 3.405 79.405 68.452 LGA I 20 I 20 0.895 0 0.045 0.071 2.908 88.333 75.655 LGA K 21 K 21 3.012 0 0.048 0.678 7.405 57.262 36.614 LGA D 22 D 22 3.057 0 0.090 0.989 3.444 55.476 53.631 LGA L 23 L 23 1.502 0 0.050 1.395 5.127 81.548 72.560 LGA T 24 T 24 0.533 0 0.032 1.060 3.775 92.857 80.136 LGA K 25 K 25 2.523 0 0.104 0.961 7.717 59.286 43.545 LGA L 26 L 26 2.934 0 0.029 1.094 5.750 57.262 45.417 LGA G 27 G 27 1.854 0 0.065 0.065 2.023 70.833 70.833 LGA A 28 A 28 1.891 0 0.038 0.049 1.908 75.000 74.571 LGA I 29 I 29 1.841 0 0.139 1.131 4.854 70.833 63.036 LGA Y 30 Y 30 2.081 0 0.078 1.400 10.210 70.833 40.159 LGA D 31 D 31 1.377 0 0.034 0.933 4.951 75.119 64.464 LGA K 32 K 32 2.868 0 0.084 0.885 4.146 53.810 48.783 LGA T 33 T 33 3.218 0 0.127 0.505 4.651 45.476 48.503 LGA K 34 K 34 3.262 0 0.077 0.990 6.788 48.571 44.656 LGA K 35 K 35 3.694 0 0.250 1.066 12.882 53.810 29.630 LGA Y 36 Y 36 1.210 0 0.093 1.436 9.586 75.119 48.810 LGA W 37 W 37 1.780 0 0.070 0.285 3.539 75.000 59.762 LGA V 38 V 38 2.313 0 0.032 0.113 3.205 61.190 60.612 LGA Y 39 Y 39 4.090 0 0.051 1.421 12.936 37.500 18.095 LGA Q 40 Q 40 5.765 0 0.667 0.682 8.180 23.810 15.026 LGA G 41 G 41 5.456 0 0.153 0.153 5.739 27.619 27.619 LGA K 42 K 42 4.109 0 0.073 0.961 5.259 42.143 37.619 LGA P 43 P 43 2.384 0 0.025 0.254 3.371 57.262 57.279 LGA V 44 V 44 2.953 0 0.037 0.090 4.021 62.976 54.626 LGA M 45 M 45 2.731 0 0.093 0.872 4.797 55.357 48.750 LGA P 46 P 46 2.879 0 0.041 0.479 3.876 53.571 52.109 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 2.889 2.809 4.123 60.667 51.788 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 32 2.55 74.286 74.012 1.207 LGA_LOCAL RMSD: 2.550 Number of atoms: 32 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.958 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 2.889 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.321449 * X + 0.262138 * Y + -0.909920 * Z + -34.218655 Y_new = 0.550996 * X + 0.833272 * Y + 0.045405 * Z + -29.782049 Z_new = 0.770113 * X + -0.486767 * Y + -0.412291 * Z + 25.819645 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.098918 -0.879018 -2.273546 [DEG: 120.2591 -50.3640 -130.2646 ] ZXZ: -1.620655 1.995764 2.134465 [DEG: -92.8567 114.3489 122.2958 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS047_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS047_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 32 2.55 74.012 2.89 REMARK ---------------------------------------------------------- MOLECULE T0548TS047_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 87 N HIS 12 -36.440 -29.555 31.799 1.00 0.00 N ATOM 88 CA HIS 12 -35.869 -28.240 31.942 1.00 0.00 C ATOM 89 ND1 HIS 12 -32.488 -28.767 32.393 1.00 0.00 N ATOM 90 CG HIS 12 -33.430 -28.966 31.409 1.00 0.00 C ATOM 91 CB HIS 12 -34.577 -28.036 31.121 1.00 0.00 C ATOM 92 NE2 HIS 12 -31.903 -30.630 31.322 1.00 0.00 N ATOM 93 CD2 HIS 12 -33.060 -30.109 30.765 1.00 0.00 C ATOM 94 CE1 HIS 12 -31.597 -29.791 32.295 1.00 0.00 C ATOM 95 C HIS 12 -36.778 -27.166 31.442 1.00 0.00 C ATOM 96 O HIS 12 -36.343 -26.023 31.346 1.00 0.00 O ATOM 97 N PHE 13 -38.070 -27.440 31.182 1.00 0.00 N ATOM 98 CA PHE 13 -38.873 -26.328 30.752 1.00 0.00 C ATOM 99 CB PHE 13 -40.294 -26.750 30.362 1.00 0.00 C ATOM 100 CG PHE 13 -40.210 -27.719 29.229 1.00 0.00 C ATOM 101 CD1 PHE 13 -39.992 -27.270 27.949 1.00 0.00 C ATOM 102 CD2 PHE 13 -40.363 -29.073 29.427 1.00 0.00 C ATOM 103 CE1 PHE 13 -39.920 -28.147 26.896 1.00 0.00 C ATOM 104 CE2 PHE 13 -40.291 -29.952 28.369 1.00 0.00 C ATOM 105 CZ PHE 13 -40.071 -29.495 27.096 1.00 0.00 C ATOM 106 C PHE 13 -38.953 -25.454 31.965 1.00 0.00 C ATOM 107 O PHE 13 -39.332 -25.913 33.041 1.00 0.00 O ATOM 108 N HIS 14 -38.582 -24.164 31.843 1.00 0.00 N ATOM 109 CA HIS 14 -38.538 -23.411 33.060 1.00 0.00 C ATOM 110 ND1 HIS 14 -36.928 -22.227 35.771 1.00 0.00 N ATOM 111 CG HIS 14 -37.283 -23.468 35.295 1.00 0.00 C ATOM 112 CB HIS 14 -37.306 -23.850 33.859 1.00 0.00 C ATOM 113 NE2 HIS 14 -37.360 -23.502 37.539 1.00 0.00 N ATOM 114 CD2 HIS 14 -37.547 -24.233 36.385 1.00 0.00 C ATOM 115 CE1 HIS 14 -36.991 -22.303 37.121 1.00 0.00 C ATOM 116 C HIS 14 -38.357 -21.963 32.739 1.00 0.00 C ATOM 117 O HIS 14 -37.795 -21.610 31.704 1.00 0.00 O ATOM 118 N TYR 15 -38.856 -21.084 33.629 1.00 0.00 N ATOM 119 CA TYR 15 -38.684 -19.669 33.465 1.00 0.00 C ATOM 120 CB TYR 15 -39.763 -19.004 32.600 1.00 0.00 C ATOM 121 CG TYR 15 -39.597 -19.565 31.232 1.00 0.00 C ATOM 122 CD1 TYR 15 -38.608 -19.090 30.398 1.00 0.00 C ATOM 123 CD2 TYR 15 -40.421 -20.573 30.781 1.00 0.00 C ATOM 124 CE1 TYR 15 -38.445 -19.607 29.133 1.00 0.00 C ATOM 125 CE2 TYR 15 -40.263 -21.091 29.517 1.00 0.00 C ATOM 126 CZ TYR 15 -39.276 -20.607 28.690 1.00 0.00 C ATOM 127 OH TYR 15 -39.110 -21.135 27.393 1.00 0.00 O ATOM 128 C TYR 15 -38.751 -19.048 34.815 1.00 0.00 C ATOM 129 O TYR 15 -38.858 -19.736 35.829 1.00 0.00 O ATOM 130 N THR 16 -38.659 -17.705 34.839 1.00 0.00 N ATOM 131 CA THR 16 -38.728 -16.957 36.061 1.00 0.00 C ATOM 132 CB THR 16 -37.437 -16.268 36.387 1.00 0.00 C ATOM 133 OG1 THR 16 -37.097 -15.352 35.357 1.00 0.00 O ATOM 134 CG2 THR 16 -36.344 -17.340 36.515 1.00 0.00 C ATOM 135 C THR 16 -39.771 -15.906 35.863 1.00 0.00 C ATOM 136 O THR 16 -40.165 -15.614 34.736 1.00 0.00 O ATOM 137 N VAL 17 -40.254 -15.319 36.974 1.00 0.00 N ATOM 138 CA VAL 17 -41.272 -14.311 36.916 1.00 0.00 C ATOM 139 CB VAL 17 -41.634 -13.808 38.284 1.00 0.00 C ATOM 140 CG1 VAL 17 -42.672 -12.681 38.156 1.00 0.00 C ATOM 141 CG2 VAL 17 -42.106 -14.998 39.134 1.00 0.00 C ATOM 142 C VAL 17 -40.719 -13.162 36.140 1.00 0.00 C ATOM 143 O VAL 17 -41.389 -12.596 35.279 1.00 0.00 O ATOM 144 N THR 18 -39.461 -12.794 36.428 1.00 0.00 N ATOM 145 CA THR 18 -38.852 -11.679 35.773 1.00 0.00 C ATOM 146 CB THR 18 -37.472 -11.404 36.282 1.00 0.00 C ATOM 147 OG1 THR 18 -36.628 -12.515 36.013 1.00 0.00 O ATOM 148 CG2 THR 18 -37.547 -11.150 37.798 1.00 0.00 C ATOM 149 C THR 18 -38.746 -11.958 34.305 1.00 0.00 C ATOM 150 O THR 18 -39.109 -11.109 33.495 1.00 0.00 O ATOM 151 N ASP 19 -38.254 -13.154 33.916 1.00 0.00 N ATOM 152 CA ASP 19 -38.081 -13.434 32.516 1.00 0.00 C ATOM 153 CB ASP 19 -37.355 -14.759 32.216 1.00 0.00 C ATOM 154 CG ASP 19 -37.053 -14.786 30.724 1.00 0.00 C ATOM 155 OD1 ASP 19 -36.719 -13.701 30.180 1.00 0.00 O ATOM 156 OD2 ASP 19 -37.168 -15.877 30.108 1.00 0.00 O ATOM 157 C ASP 19 -39.421 -13.501 31.849 1.00 0.00 C ATOM 158 O ASP 19 -39.604 -12.980 30.749 1.00 0.00 O ATOM 159 N ILE 20 -40.397 -14.154 32.509 1.00 0.00 N ATOM 160 CA ILE 20 -41.706 -14.323 31.947 1.00 0.00 C ATOM 161 CB ILE 20 -42.595 -15.185 32.801 1.00 0.00 C ATOM 162 CG2 ILE 20 -44.014 -15.166 32.208 1.00 0.00 C ATOM 163 CG1 ILE 20 -41.995 -16.598 32.908 1.00 0.00 C ATOM 164 CD1 ILE 20 -42.668 -17.477 33.960 1.00 0.00 C ATOM 165 C ILE 20 -42.349 -12.986 31.805 1.00 0.00 C ATOM 166 O ILE 20 -42.935 -12.673 30.771 1.00 0.00 O ATOM 167 N LYS 21 -42.239 -12.144 32.845 1.00 0.00 N ATOM 168 CA LYS 21 -42.850 -10.853 32.777 1.00 0.00 C ATOM 169 CB LYS 21 -42.668 -10.019 34.056 1.00 0.00 C ATOM 170 CG LYS 21 -43.382 -8.664 34.000 1.00 0.00 C ATOM 171 CD LYS 21 -43.408 -7.926 35.338 1.00 0.00 C ATOM 172 CE LYS 21 -43.928 -6.492 35.218 1.00 0.00 C ATOM 173 NZ LYS 21 -43.660 -5.751 36.471 1.00 0.00 N ATOM 174 C LYS 21 -42.205 -10.107 31.653 1.00 0.00 C ATOM 175 O LYS 21 -42.871 -9.384 30.913 1.00 0.00 O ATOM 176 N ASP 22 -40.872 -10.263 31.509 1.00 0.00 N ATOM 177 CA ASP 22 -40.140 -9.577 30.486 1.00 0.00 C ATOM 178 CB ASP 22 -38.624 -9.847 30.527 1.00 0.00 C ATOM 179 CG ASP 22 -37.953 -8.972 29.474 1.00 0.00 C ATOM 180 OD1 ASP 22 -38.611 -8.016 28.982 1.00 0.00 O ATOM 181 OD2 ASP 22 -36.768 -9.252 29.143 1.00 0.00 O ATOM 182 C ASP 22 -40.610 -10.041 29.150 1.00 0.00 C ATOM 183 O ASP 22 -40.876 -9.226 28.272 1.00 0.00 O ATOM 184 N LEU 23 -40.750 -11.370 28.974 1.00 0.00 N ATOM 185 CA LEU 23 -41.081 -11.940 27.698 1.00 0.00 C ATOM 186 CB LEU 23 -41.042 -13.474 27.752 1.00 0.00 C ATOM 187 CG LEU 23 -41.380 -14.128 26.410 1.00 0.00 C ATOM 188 CD1 LEU 23 -40.471 -13.570 25.308 1.00 0.00 C ATOM 189 CD2 LEU 23 -41.318 -15.662 26.499 1.00 0.00 C ATOM 190 C LEU 23 -42.442 -11.492 27.265 1.00 0.00 C ATOM 191 O LEU 23 -42.667 -11.206 26.092 1.00 0.00 O ATOM 192 N THR 24 -43.392 -11.427 28.205 1.00 0.00 N ATOM 193 CA THR 24 -44.728 -11.004 27.916 1.00 0.00 C ATOM 194 CB THR 24 -45.602 -11.074 29.127 1.00 0.00 C ATOM 195 OG1 THR 24 -45.575 -12.390 29.654 1.00 0.00 O ATOM 196 CG2 THR 24 -47.038 -10.700 28.727 1.00 0.00 C ATOM 197 C THR 24 -44.670 -9.569 27.493 1.00 0.00 C ATOM 198 O THR 24 -45.416 -9.135 26.617 1.00 0.00 O ATOM 199 N LYS 25 -43.767 -8.794 28.119 1.00 0.00 N ATOM 200 CA LYS 25 -43.631 -7.394 27.835 1.00 0.00 C ATOM 201 CB LYS 25 -42.485 -6.743 28.634 1.00 0.00 C ATOM 202 CG LYS 25 -42.723 -6.736 30.144 1.00 0.00 C ATOM 203 CD LYS 25 -41.481 -6.417 30.978 1.00 0.00 C ATOM 204 CE LYS 25 -41.783 -6.296 32.472 1.00 0.00 C ATOM 205 NZ LYS 25 -40.525 -6.217 33.244 1.00 0.00 N ATOM 206 C LYS 25 -43.283 -7.268 26.387 1.00 0.00 C ATOM 207 O LYS 25 -43.763 -6.363 25.707 1.00 0.00 O ATOM 208 N LEU 26 -42.436 -8.192 25.893 1.00 0.00 N ATOM 209 CA LEU 26 -41.997 -8.234 24.527 1.00 0.00 C ATOM 210 CB LEU 26 -40.923 -9.283 24.168 1.00 0.00 C ATOM 211 CG LEU 26 -39.477 -8.966 24.599 1.00 0.00 C ATOM 212 CD1 LEU 26 -39.238 -9.238 26.084 1.00 0.00 C ATOM 213 CD2 LEU 26 -38.456 -9.705 23.727 1.00 0.00 C ATOM 214 C LEU 26 -43.141 -8.555 23.624 1.00 0.00 C ATOM 215 O LEU 26 -43.048 -8.322 22.419 1.00 0.00 O ATOM 216 N GLY 27 -44.222 -9.160 24.151 1.00 0.00 N ATOM 217 CA GLY 27 -45.314 -9.492 23.283 1.00 0.00 C ATOM 218 C GLY 27 -45.540 -10.977 23.259 1.00 0.00 C ATOM 219 O GLY 27 -46.354 -11.466 22.478 1.00 0.00 O ATOM 220 N ALA 28 -44.843 -11.746 24.118 1.00 0.00 N ATOM 221 CA ALA 28 -44.979 -13.181 24.095 1.00 0.00 C ATOM 222 CB ALA 28 -43.838 -13.921 24.805 1.00 0.00 C ATOM 223 C ALA 28 -46.264 -13.671 24.696 1.00 0.00 C ATOM 224 O ALA 28 -46.868 -13.018 25.549 1.00 0.00 O ATOM 225 N ILE 29 -46.692 -14.878 24.247 1.00 0.00 N ATOM 226 CA ILE 29 -47.906 -15.509 24.704 1.00 0.00 C ATOM 227 CB ILE 29 -48.801 -15.894 23.564 1.00 0.00 C ATOM 228 CG2 ILE 29 -50.035 -16.620 24.126 1.00 0.00 C ATOM 229 CG1 ILE 29 -49.147 -14.631 22.754 1.00 0.00 C ATOM 230 CD1 ILE 29 -49.773 -14.913 21.388 1.00 0.00 C ATOM 231 C ILE 29 -47.552 -16.752 25.482 1.00 0.00 C ATOM 232 O ILE 29 -46.959 -17.696 24.960 1.00 0.00 O ATOM 233 N TYR 30 -47.959 -16.780 26.769 1.00 0.00 N ATOM 234 CA TYR 30 -47.579 -17.808 27.702 1.00 0.00 C ATOM 235 CB TYR 30 -46.751 -17.198 28.846 1.00 0.00 C ATOM 236 CG TYR 30 -47.516 -15.978 29.233 1.00 0.00 C ATOM 237 CD1 TYR 30 -48.516 -16.030 30.172 1.00 0.00 C ATOM 238 CD2 TYR 30 -47.242 -14.774 28.629 1.00 0.00 C ATOM 239 CE1 TYR 30 -49.226 -14.901 30.508 1.00 0.00 C ATOM 240 CE2 TYR 30 -47.950 -13.645 28.963 1.00 0.00 C ATOM 241 CZ TYR 30 -48.942 -13.701 29.906 1.00 0.00 C ATOM 242 OH TYR 30 -49.664 -12.538 30.245 1.00 0.00 O ATOM 243 C TYR 30 -48.792 -18.472 28.289 1.00 0.00 C ATOM 244 O TYR 30 -49.810 -17.832 28.549 1.00 0.00 O ATOM 245 N ASP 31 -48.708 -19.801 28.525 1.00 0.00 N ATOM 246 CA ASP 31 -49.855 -20.483 29.055 1.00 0.00 C ATOM 247 CB ASP 31 -49.918 -22.003 28.753 1.00 0.00 C ATOM 248 CG ASP 31 -48.658 -22.761 29.163 1.00 0.00 C ATOM 249 OD1 ASP 31 -48.116 -22.567 30.280 1.00 0.00 O ATOM 250 OD2 ASP 31 -48.213 -23.575 28.316 1.00 0.00 O ATOM 251 C ASP 31 -50.017 -20.187 30.522 1.00 0.00 C ATOM 252 O ASP 31 -49.266 -20.630 31.387 1.00 0.00 O ATOM 253 N LYS 32 -51.063 -19.426 30.869 1.00 0.00 N ATOM 254 CA LYS 32 -51.206 -19.021 32.239 1.00 0.00 C ATOM 255 CB LYS 32 -52.456 -18.158 32.490 1.00 0.00 C ATOM 256 CG LYS 32 -52.327 -16.709 32.026 1.00 0.00 C ATOM 257 CD LYS 32 -51.232 -15.948 32.775 1.00 0.00 C ATOM 258 CE LYS 32 -51.280 -14.432 32.578 1.00 0.00 C ATOM 259 NZ LYS 32 -50.034 -13.806 33.077 1.00 0.00 N ATOM 260 C LYS 32 -51.345 -20.208 33.132 1.00 0.00 C ATOM 261 O LYS 32 -50.801 -20.234 34.236 1.00 0.00 O ATOM 262 N THR 33 -52.104 -21.220 32.691 1.00 0.00 N ATOM 263 CA THR 33 -52.348 -22.332 33.561 1.00 0.00 C ATOM 264 CB THR 33 -53.318 -23.307 32.960 1.00 0.00 C ATOM 265 OG1 THR 33 -52.808 -23.827 31.740 1.00 0.00 O ATOM 266 CG2 THR 33 -54.654 -22.582 32.724 1.00 0.00 C ATOM 267 C THR 33 -51.072 -23.061 33.872 1.00 0.00 C ATOM 268 O THR 33 -50.763 -23.318 35.036 1.00 0.00 O ATOM 269 N LYS 34 -50.310 -23.417 32.821 1.00 0.00 N ATOM 270 CA LYS 34 -49.106 -24.200 32.922 1.00 0.00 C ATOM 271 CB LYS 34 -48.741 -24.895 31.604 1.00 0.00 C ATOM 272 CG LYS 34 -49.806 -25.918 31.202 1.00 0.00 C ATOM 273 CD LYS 34 -49.603 -26.508 29.810 1.00 0.00 C ATOM 274 CE LYS 34 -48.270 -27.245 29.682 1.00 0.00 C ATOM 275 NZ LYS 34 -48.104 -28.185 30.814 1.00 0.00 N ATOM 276 C LYS 34 -47.911 -23.443 33.430 1.00 0.00 C ATOM 277 O LYS 34 -47.019 -24.053 34.017 1.00 0.00 O ATOM 278 N LYS 35 -47.834 -22.109 33.233 1.00 0.00 N ATOM 279 CA LYS 35 -46.644 -21.390 33.609 1.00 0.00 C ATOM 280 CB LYS 35 -46.207 -21.659 35.063 1.00 0.00 C ATOM 281 CG LYS 35 -46.989 -20.892 36.132 1.00 0.00 C ATOM 282 CD LYS 35 -46.603 -19.416 36.218 1.00 0.00 C ATOM 283 CE LYS 35 -45.264 -19.201 36.935 1.00 0.00 C ATOM 284 NZ LYS 35 -44.909 -17.764 36.941 1.00 0.00 N ATOM 285 C LYS 35 -45.523 -21.827 32.713 1.00 0.00 C ATOM 286 O LYS 35 -44.385 -21.982 33.150 1.00 0.00 O ATOM 287 N TYR 36 -45.830 -22.045 31.420 1.00 0.00 N ATOM 288 CA TYR 36 -44.854 -22.422 30.440 1.00 0.00 C ATOM 289 CB TYR 36 -44.909 -23.905 30.026 1.00 0.00 C ATOM 290 CG TYR 36 -44.503 -24.745 31.187 1.00 0.00 C ATOM 291 CD1 TYR 36 -45.439 -25.179 32.094 1.00 0.00 C ATOM 292 CD2 TYR 36 -43.186 -25.103 31.370 1.00 0.00 C ATOM 293 CE1 TYR 36 -45.073 -25.954 33.171 1.00 0.00 C ATOM 294 CE2 TYR 36 -42.811 -25.878 32.443 1.00 0.00 C ATOM 295 CZ TYR 36 -43.754 -26.302 33.349 1.00 0.00 C ATOM 296 OH TYR 36 -43.373 -27.095 34.453 1.00 0.00 O ATOM 297 C TYR 36 -45.148 -21.666 29.180 1.00 0.00 C ATOM 298 O TYR 36 -46.204 -21.053 29.034 1.00 0.00 O ATOM 299 N TRP 37 -44.193 -21.681 28.229 1.00 0.00 N ATOM 300 CA TRP 37 -44.401 -21.031 26.969 1.00 0.00 C ATOM 301 CB TRP 37 -43.165 -20.243 26.512 1.00 0.00 C ATOM 302 CG TRP 37 -42.909 -19.076 27.434 1.00 0.00 C ATOM 303 CD2 TRP 37 -43.563 -17.805 27.307 1.00 0.00 C ATOM 304 CD1 TRP 37 -42.122 -18.996 28.545 1.00 0.00 C ATOM 305 NE1 TRP 37 -42.258 -17.759 29.130 1.00 0.00 N ATOM 306 CE2 TRP 37 -43.139 -17.014 28.375 1.00 0.00 C ATOM 307 CE3 TRP 37 -44.449 -17.339 26.384 1.00 0.00 C ATOM 308 CZ2 TRP 37 -43.602 -15.739 28.532 1.00 0.00 C ATOM 309 CZ3 TRP 37 -44.899 -16.049 26.544 1.00 0.00 C ATOM 310 CH2 TRP 37 -44.488 -15.260 27.595 1.00 0.00 C ATOM 311 C TRP 37 -44.702 -22.103 25.974 1.00 0.00 C ATOM 312 O TRP 37 -44.033 -23.134 25.928 1.00 0.00 O ATOM 313 N VAL 38 -45.756 -21.883 25.166 1.00 0.00 N ATOM 314 CA VAL 38 -46.155 -22.880 24.208 1.00 0.00 C ATOM 315 CB VAL 38 -47.516 -23.448 24.488 1.00 0.00 C ATOM 316 CG1 VAL 38 -47.978 -24.279 23.280 1.00 0.00 C ATOM 317 CG2 VAL 38 -47.432 -24.262 25.786 1.00 0.00 C ATOM 318 C VAL 38 -46.231 -22.251 22.855 1.00 0.00 C ATOM 319 O VAL 38 -46.778 -21.162 22.692 1.00 0.00 O ATOM 320 N TYR 39 -45.668 -22.923 21.834 1.00 0.00 N ATOM 321 CA TYR 39 -45.788 -22.399 20.505 1.00 0.00 C ATOM 322 CB TYR 39 -44.482 -21.833 19.902 1.00 0.00 C ATOM 323 CG TYR 39 -43.517 -22.942 19.661 1.00 0.00 C ATOM 324 CD1 TYR 39 -42.713 -23.403 20.668 1.00 0.00 C ATOM 325 CD2 TYR 39 -43.416 -23.524 18.420 1.00 0.00 C ATOM 326 CE1 TYR 39 -41.818 -24.422 20.454 1.00 0.00 C ATOM 327 CE2 TYR 39 -42.524 -24.544 18.190 1.00 0.00 C ATOM 328 CZ TYR 39 -41.723 -24.995 19.210 1.00 0.00 C ATOM 329 OH TYR 39 -40.805 -26.042 18.987 1.00 0.00 O ATOM 330 C TYR 39 -46.239 -23.524 19.656 1.00 0.00 C ATOM 331 O TYR 39 -45.683 -24.620 19.747 1.00 0.00 O ATOM 332 N GLN 40 -47.251 -23.273 18.795 1.00 0.00 N ATOM 333 CA GLN 40 -47.766 -24.382 18.074 1.00 0.00 C ATOM 334 CB GLN 40 -46.671 -25.075 17.233 1.00 0.00 C ATOM 335 CG GLN 40 -46.061 -24.114 16.200 1.00 0.00 C ATOM 336 CD GLN 40 -44.837 -24.742 15.548 1.00 0.00 C ATOM 337 OE1 GLN 40 -44.505 -25.903 15.780 1.00 0.00 O ATOM 338 NE2 GLN 40 -44.137 -23.939 14.702 1.00 0.00 N ATOM 339 C GLN 40 -48.276 -25.226 19.192 1.00 0.00 C ATOM 340 O GLN 40 -48.787 -24.702 20.176 1.00 0.00 O ATOM 341 N GLY 41 -48.220 -26.541 19.056 1.00 0.00 N ATOM 342 CA GLY 41 -48.649 -27.438 20.085 1.00 0.00 C ATOM 343 C GLY 41 -47.676 -27.574 21.219 1.00 0.00 C ATOM 344 O GLY 41 -48.070 -28.002 22.301 1.00 0.00 O ATOM 345 N LYS 42 -46.378 -27.293 20.973 1.00 0.00 N ATOM 346 CA LYS 42 -45.324 -27.714 21.864 1.00 0.00 C ATOM 347 CB LYS 42 -44.024 -27.999 21.102 1.00 0.00 C ATOM 348 CG LYS 42 -44.224 -28.859 19.852 1.00 0.00 C ATOM 349 CD LYS 42 -44.881 -28.089 18.702 1.00 0.00 C ATOM 350 CE LYS 42 -44.930 -28.844 17.373 1.00 0.00 C ATOM 351 NZ LYS 42 -46.159 -29.665 17.303 1.00 0.00 N ATOM 352 C LYS 42 -44.941 -26.742 22.939 1.00 0.00 C ATOM 353 O LYS 42 -44.945 -25.521 22.774 1.00 0.00 O ATOM 354 N PRO 43 -44.603 -27.328 24.068 1.00 0.00 N ATOM 355 CA PRO 43 -44.046 -26.607 25.183 1.00 0.00 C ATOM 356 CD PRO 43 -45.220 -28.575 24.483 1.00 0.00 C ATOM 357 CB PRO 43 -44.252 -27.483 26.416 1.00 0.00 C ATOM 358 CG PRO 43 -44.573 -28.874 25.843 1.00 0.00 C ATOM 359 C PRO 43 -42.607 -26.318 24.868 1.00 0.00 C ATOM 360 O PRO 43 -41.915 -27.220 24.394 1.00 0.00 O ATOM 361 N VAL 44 -42.113 -25.102 25.171 1.00 0.00 N ATOM 362 CA VAL 44 -40.783 -24.725 24.768 1.00 0.00 C ATOM 363 CB VAL 44 -40.656 -23.265 24.437 1.00 0.00 C ATOM 364 CG1 VAL 44 -39.202 -22.957 24.038 1.00 0.00 C ATOM 365 CG2 VAL 44 -41.697 -22.909 23.370 1.00 0.00 C ATOM 366 C VAL 44 -39.787 -24.979 25.856 1.00 0.00 C ATOM 367 O VAL 44 -40.054 -24.698 27.025 1.00 0.00 O ATOM 368 N MET 45 -38.588 -25.481 25.480 1.00 0.00 N ATOM 369 CA MET 45 -37.533 -25.744 26.421 1.00 0.00 C ATOM 370 CB MET 45 -36.549 -26.839 25.980 1.00 0.00 C ATOM 371 CG MET 45 -37.146 -28.245 25.958 1.00 0.00 C ATOM 372 SD MET 45 -36.013 -29.554 25.408 1.00 0.00 S ATOM 373 CE MET 45 -36.145 -29.032 23.675 1.00 0.00 C ATOM 374 C MET 45 -36.725 -24.491 26.556 1.00 0.00 C ATOM 375 O MET 45 -36.472 -23.790 25.580 1.00 0.00 O ATOM 376 N PRO 46 -36.275 -24.217 27.750 1.00 0.00 N ATOM 377 CA PRO 46 -35.581 -22.986 28.040 1.00 0.00 C ATOM 378 CD PRO 46 -35.824 -25.279 28.636 1.00 0.00 C ATOM 379 CB PRO 46 -35.085 -23.126 29.469 1.00 0.00 C ATOM 380 CG PRO 46 -34.748 -24.623 29.525 1.00 0.00 C ATOM 381 C PRO 46 -34.374 -22.866 27.164 1.00 0.00 C ATOM 382 O PRO 46 -33.952 -23.838 26.561 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 36.52 86.8 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 11.94 97.1 34 100.0 34 ARMSMC SURFACE . . . . . . . . 39.15 87.5 56 100.0 56 ARMSMC BURIED . . . . . . . . 20.06 83.3 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.71 43.8 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 82.61 37.9 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 95.84 29.4 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 83.46 37.0 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 45.09 80.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.80 40.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 68.86 38.1 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 45.07 53.8 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 69.43 40.9 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 80.15 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.38 62.5 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 73.72 57.1 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 77.72 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 69.38 62.5 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.58 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 84.58 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 98.62 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 84.58 50.0 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.89 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.89 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.0825 CRMSCA SECONDARY STRUCTURE . . 2.52 17 100.0 17 CRMSCA SURFACE . . . . . . . . 3.04 29 100.0 29 CRMSCA BURIED . . . . . . . . 2.03 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.92 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 2.58 85 100.0 85 CRMSMC SURFACE . . . . . . . . 3.08 143 100.0 143 CRMSMC BURIED . . . . . . . . 1.97 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.05 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 4.86 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 5.09 84 100.0 84 CRMSSC SURFACE . . . . . . . . 5.42 127 100.0 127 CRMSSC BURIED . . . . . . . . 2.84 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.14 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 4.13 152 100.0 152 CRMSALL SURFACE . . . . . . . . 4.43 243 100.0 243 CRMSALL BURIED . . . . . . . . 2.47 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.680 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 2.325 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 2.830 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 1.955 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.702 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 2.388 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 2.870 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 1.898 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.365 1.000 0.500 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 4.220 1.000 0.500 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 4.448 1.000 0.500 84 100.0 84 ERRSC SURFACE . . . . . . . . 4.746 1.000 0.500 127 100.0 127 ERRSC BURIED . . . . . . . . 2.697 1.000 0.500 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.548 1.000 0.500 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 3.494 1.000 0.500 152 100.0 152 ERRALL SURFACE . . . . . . . . 3.816 1.000 0.500 243 100.0 243 ERRALL BURIED . . . . . . . . 2.316 1.000 0.500 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 2 11 21 34 35 35 35 DISTCA CA (P) 5.71 31.43 60.00 97.14 100.00 35 DISTCA CA (RMS) 0.62 1.55 2.10 2.79 2.89 DISTCA ALL (N) 9 55 149 249 288 296 296 DISTALL ALL (P) 3.04 18.58 50.34 84.12 97.30 296 DISTALL ALL (RMS) 0.80 1.49 2.24 2.94 3.77 DISTALL END of the results output